BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein
FliP [Candidatus Liberibacter asiaticus str. psy62]
(246 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|222530123|ref|YP_002574005.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor bescii
DSM 6725]
gi|222456970|gb|ACM61232.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor bescii
DSM 6725]
Length = 252
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 101/231 (43%), Positives = 159/231 (68%), Gaps = 4/231 (1%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
E+ FA +SL+ + + + + ++ TIL++AP +LIM+T F R +IV +R
Sbjct: 25 EIAFAAASLNINLGNSQNPNDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGFIRN 84
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G +PPN ++I LALF+TF+VM+P D+ QP +N +IT A++R EP
Sbjct: 85 ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYIQAYQPYINGRITSQEALKRAEEPLKE 144
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM NTR+KDL LF+ +++ + T + R+++P+F+ISEL+ +FE+GFLI +P
Sbjct: 145 FMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISELKSAFEMGFLIYVP 200
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L++E+LV+SF
Sbjct: 201 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVIESLVRSF 251
>gi|312621584|ref|YP_004023197.1| flagellar biosynthetic protein flip [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202051|gb|ADQ45378.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
kronotskyensis 2002]
Length = 252
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 103/231 (44%), Positives = 160/231 (69%), Gaps = 4/231 (1%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
E+ FA +SL+ + P + + + ++ TIL++AP +LIM+T F R +IV +R
Sbjct: 25 EIAFATASLNINLGNPQNPNDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGFIRN 84
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G +PPN ++I LALF+TF+VM+P D+ QP +N +IT A++R EP
Sbjct: 85 ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEEPLKE 144
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM NTR+KDL LF+ +++ + T + R+++P+F+ISEL+ +FE+GFLI +P
Sbjct: 145 FMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISELKSAFEMGFLIYVP 200
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+SF
Sbjct: 201 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 251
>gi|238924154|ref|YP_002937670.1| flagellar biosynthetic protein FliP [Eubacterium rectale ATCC
33656]
gi|238875829|gb|ACR75536.1| flagellar biosynthetic protein FliP [Eubacterium rectale ATCC
33656]
gi|291524887|emb|CBK90474.1| flagellar biosynthetic protein FliP [Eubacterium rectale DSM 17629]
gi|291529028|emb|CBK94614.1| flagellar biosynthetic protein FliP [Eubacterium rectale M104/1]
Length = 299
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 97/231 (41%), Positives = 150/231 (64%), Gaps = 5/231 (2%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
+ S+ + + + VR F + T+LS+AP +LIM+T F R IIV +RT
Sbjct: 73 ADATSDSTNGLNIYYNNESGSLSTPVRMFLVLTVLSLAPSILIMLTSFTRIIIVLHFVRT 132
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G + PPN V++ LALF+T ++M PT + E I+PL +IT+ AI+ PF
Sbjct: 133 AIGTQTAPPNQVLVGLALFLTLFIMWPTFSQVNEKAIKPLDEGKITQQEAIKEAEGPFRE 192
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM T+ KD+ LF+D++ + D + + L+P+F++SELR +F +GFLI +P
Sbjct: 193 FMYGQTQTKDIKLFVDISG-----DEYDDYDDVPFTTLVPAFILSELRTAFILGFLIYIP 247
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
F++IDM+V++++M+MGMMMLPPT+IS+PFKV+ F+L DGW L++ NLVK+F
Sbjct: 248 FIVIDMVVSSVLMSMGMMMLPPTTISMPFKVLLFILADGWDLVIGNLVKTF 298
>gi|312876513|ref|ZP_07736496.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796724|gb|EFR13070.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
lactoaceticus 6A]
Length = 252
Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats.
Identities = 102/244 (41%), Positives = 160/244 (65%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ E+ FA +S++ + P + + ++ TIL++AP +LIM+T
Sbjct: 12 TLFLILITTCAKKEIAFASASININLGSPQNPKDVSSALQLIIFLTILTLAPSILIMMTS 71
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R +IV +R +G +PPN ++I LALF+TF+VM+P D+ QP +N +IT
Sbjct: 72 FTRILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITS 131
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A++R EP FM NTR+KDL LF+ +++ + T + R+++P+F+ISEL
Sbjct: 132 QEALKRAEEPLKEFMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISEL 187
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +FE+GFLI +PFLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+L
Sbjct: 188 KSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESL 247
Query: 242 VKSF 245
V+SF
Sbjct: 248 VRSF 251
>gi|312126835|ref|YP_003991709.1| flagellar biosynthetic protein flip [Caldicellulosiruptor
hydrothermalis 108]
gi|311776854|gb|ADQ06340.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
hydrothermalis 108]
Length = 253
Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats.
Identities = 103/231 (44%), Positives = 159/231 (68%), Gaps = 4/231 (1%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
E+ FA +SL+ + P + + ++ TIL++AP +LIM+T F R +IV +R
Sbjct: 26 EIAFATASLNINLGSPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGFVRN 85
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G +PPN ++I LALF+TF+VM+P D+ QP +N +IT A++R EP
Sbjct: 86 ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEEPLKE 145
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM NTR+KDL LF+ +++ + T + R+++P+F+ISEL+ +FE+GFLI +P
Sbjct: 146 FMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISELKSAFEMGFLIYVP 201
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+SF
Sbjct: 202 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252
>gi|302384102|ref|YP_003819925.1| flagellar biosynthetic protein FliP [Brevundimonas subvibrioides
ATCC 15264]
gi|302194730|gb|ADL02302.1| flagellar biosynthetic protein FliP [Brevundimonas subvibrioides
ATCC 15264]
Length = 325
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 97/221 (43%), Positives = 149/221 (67%), Gaps = 4/221 (1%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
+++ ++ +V+ G+ T+LS+AP ++IM T F R I+V S+LRT +GM PPN
Sbjct: 102 INLDLGTGAGLTERVVQLVGLMTVLSLAPSIVIMTTSFVRIIVVLSLLRTALGMQQSPPN 161
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
V++SLALF++ VM+PT + + GI+PLM+ Q+ A +EP FM + D
Sbjct: 162 AVLVSLALFLSAIVMAPTWQDAYDSGIRPLMDQQMELPQAFDLASEPVKTFMLAQVDQGD 221
Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
L+LF ++ + + R++ P+FMISEL+++FEIGFL+ +PFL+ID++VA+
Sbjct: 222 LALFTRLSRIEAPTQTV----DLPLRVVTPAFMISELKKAFEIGFLLFVPFLVIDLVVAS 277
Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++M+MGMMMLPP ISLPFK+IFFVL+DGW L+ +LV+SF
Sbjct: 278 VLMSMGMMMLPPVVISLPFKLIFFVLVDGWRLVAGSLVESF 318
>gi|269976283|ref|ZP_06183279.1| flagellar biosynthesis protein FliP [Mobiluncus mulieris 28-1]
gi|269935612|gb|EEZ92150.1| flagellar biosynthesis protein FliP [Mobiluncus mulieris 28-1]
Length = 528
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 81/210 (38%), Positives = 133/210 (63%), Gaps = 4/210 (1%)
Query: 36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95
T V F + T+LS+AP LL+M+T F + IV ++ R +G+ +PP V+ LA+F++
Sbjct: 322 PTTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLS 381
Query: 96 FYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
++M+PT++ +QPL + +I + +PF FM TRE+D++L A+
Sbjct: 382 LFIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIALMTRAANRP 441
Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
+ D + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLP
Sbjct: 442 NP----ESLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLP 497
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
P +SLPFKV+ FV++DGW +L + L+ ++
Sbjct: 498 PVMVSLPFKVLLFVMVDGWGMLTQTLIGTY 527
>gi|302872555|ref|YP_003841191.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
obsidiansis OB47]
gi|302575414|gb|ADL43205.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
obsidiansis OB47]
Length = 253
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 100/229 (43%), Positives = 154/229 (67%), Gaps = 4/229 (1%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
FA +S ++ P + + ++ TIL++AP +LIM+T F R +IV +R +
Sbjct: 28 AFASASFSINLDNPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGFVRNAL 87
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G +PPN ++I LALF+TF+VM+P D+ QP + QIT A++R +P FM
Sbjct: 88 GTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYIKGQITSQEALKRAEQPLKEFM 147
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
NTR+KDL LF+ + + + T + R+++P+F+ISEL+ +FE+GFLI +PFL
Sbjct: 148 LKNTRKKDLDLFVKLGNIN----PNTNVKDLPIRVVVPAFIISELKSAFEMGFLIYVPFL 203
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+SF
Sbjct: 204 IIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252
>gi|227876756|ref|ZP_03994865.1| possible flagellar biosynthesis protein FliP [Mobiluncus mulieris
ATCC 35243]
gi|227842653|gb|EEJ52853.1| possible flagellar biosynthesis protein FliP [Mobiluncus mulieris
ATCC 35243]
Length = 502
Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats.
Identities = 81/210 (38%), Positives = 133/210 (63%), Gaps = 4/210 (1%)
Query: 36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95
T V F + T+LS+AP LL+M+T F + IV ++ R +G+ +PP V+ LA+F++
Sbjct: 296 PTTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLS 355
Query: 96 FYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
++M+PT++ +QPL + +I + +PF FM TRE+D++L A+
Sbjct: 356 LFIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIALMTRAANRP 415
Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
+ D + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLP
Sbjct: 416 NP----ESLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLP 471
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
P +SLPFKV+ FV++DGW +L + L+ ++
Sbjct: 472 PVMVSLPFKVLLFVMVDGWGMLTQTLIGTY 501
>gi|219681460|ref|YP_002467845.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|257471135|ref|ZP_05635134.1| type III secretion system protein [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|219624303|gb|ACL30458.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
Length = 379
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 96/243 (39%), Positives = 140/243 (57%), Gaps = 4/243 (1%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
R F L A + + V+T T L+ P L+M+T F
Sbjct: 139 RIIPFVFLLSLCPSAHADMPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSF 198
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R +IVF +LR +G PPN +++ LALF+TF++MSPT ++ + P ++
Sbjct: 199 TRIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFEKIYKDAYVPFSQEKMNME 258
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
AI + + P FM N R DL LF +AH S + I RIL+PSF+ SEL+
Sbjct: 259 DAILKGSMPLKKFMLNQIRTPDLELFSKLAHISSYK----NKNDIPMRILLPSFITSELK 314
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+F+IGF I +PFLIID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LL+ +L
Sbjct: 315 TAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLA 374
Query: 243 KSF 245
SF
Sbjct: 375 HSF 377
>gi|219682016|ref|YP_002468400.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219621749|gb|ACL29905.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|311085824|gb|ADP65906.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
[Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
gi|311086397|gb|ADP66478.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
[Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
gi|311087553|gb|ADP67632.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
[Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)]
Length = 379
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 96/243 (39%), Positives = 140/243 (57%), Gaps = 4/243 (1%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
R F L A + + V+T T L+ P L+M+T F
Sbjct: 139 RIIPFVFLLSLCPSAHADMPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSF 198
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R +IVF +LR +G PPN +++ LALF+TF++MSPT ++ + P ++
Sbjct: 199 TRIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFEKIYKDAYVPFSQEKMNME 258
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
AI + + P FM N R DL LF +AH S + I RIL+PSF+ SEL+
Sbjct: 259 DAILKGSMPLKKFMLNQIRTPDLELFSKLAHISSYK----NKNDIPMRILLPSFITSELK 314
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+F+IGF I +PFLIID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LL+ +L
Sbjct: 315 TAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLA 374
Query: 243 KSF 245
SF
Sbjct: 375 HSF 377
>gi|15616704|ref|NP_239916.1| type III secretion system protein [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|12644517|sp|P57184|FLIP_BUCAI RecName: Full=Flagellar biosynthetic protein fliP
gi|25403546|pir||B84939 flagellar biosynthetic protein fliP [imported] - Buchnera sp.
(strain APS)
gi|10038767|dbj|BAB12802.1| flagellar biosynthetic protein fliP [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 379
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 96/243 (39%), Positives = 140/243 (57%), Gaps = 4/243 (1%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
R F L A + + V+T T L+ P L+M+T F
Sbjct: 139 RIIPFVFLLSLCPSAHADMPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSF 198
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R +IVF +LR +G PPN +++ LALF+TF++MSPT ++ + P ++
Sbjct: 199 TRIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFEKIYKDAYVPFSQEKMNME 258
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
AI + + P FM N R DL LF +AH S + I RIL+PSF+ SEL+
Sbjct: 259 DAILKGSMPLKKFMLNQIRTPDLELFSKLAHISSYK----NKNDIPMRILLPSFITSELK 314
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+F+IGF I +PFLIID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LL+ +L
Sbjct: 315 TAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLA 374
Query: 243 KSF 245
SF
Sbjct: 375 HSF 377
>gi|312792663|ref|YP_004025586.1| flagellar biosynthetic protein flip [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179803|gb|ADQ39973.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 253
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 103/231 (44%), Positives = 159/231 (68%), Gaps = 4/231 (1%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
E+ FA +SL+ + P + + ++ TIL++AP +LIM+T F R +IV +R
Sbjct: 26 EIAFASASLNINLGSPQNPKDVSSALQLLIFLTILTLAPSILIMMTSFTRILIVLGFVRN 85
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G +PPN ++I LALF+TF+VM+P D+ QP +N +IT A++R EP
Sbjct: 86 ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEEPLKE 145
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM NTR+KDL LF+ +++ + T + R+++P+F+ISEL+ +FE+GFLI +P
Sbjct: 146 FMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISELKSAFEMGFLIYVP 201
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+SF
Sbjct: 202 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252
>gi|311086976|gb|ADP67056.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
[Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
Length = 379
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 96/243 (39%), Positives = 140/243 (57%), Gaps = 4/243 (1%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
R F L A + + V+T T L+ P L+M+T F
Sbjct: 139 RIIPFVFLLSLCPSAHADMPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSF 198
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R +IVF +LR +G PPN +++ LALF+TF++MSPT ++ + P ++
Sbjct: 199 TRIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFEKIYKDAYVPFSQEKMNME 258
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
AI + + P FM N R DL LF +AH S + I RIL+PSF+ SEL+
Sbjct: 259 DAILKGSMPLKKFMLNQIRTPDLELFSKLAHISSYK----NKNDIPMRILLPSFITSELK 314
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+F+IGF I +PFLIID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LL+ +L
Sbjct: 315 TAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLA 374
Query: 243 KSF 245
SF
Sbjct: 375 HSF 377
>gi|300722650|ref|YP_003711940.1| flagellar biosynthesis protein [Xenorhabdus nematophila ATCC 19061]
gi|297629157|emb|CBJ89753.1| flagellar biosynthesis [Xenorhabdus nematophila ATCC 19061]
Length = 272
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 143/245 (58%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I + A+ +P + V+T T L P L+M+T
Sbjct: 30 VITLLMVLFLPLFSMNAAAELPGIISQPLPNGGQSWSLPVQTLIFITALGFIPAALLMMT 89
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +LR +G S PPN V++ LALFMTF++M+P D+ + P ++IT
Sbjct: 90 SFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFMTFFIMAPVFDKVYQDAYLPYNEDKIT 149
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ + ++P FM TRE DL+LF +A D + R+L+P+F+ SE
Sbjct: 150 LEAALDKGSKPLRQFMLRQTRENDLALFARLADQE----AFETADSVPLRVLVPAFITSE 205
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +
Sbjct: 206 LKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGS 265
Query: 241 LVKSF 245
L +SF
Sbjct: 266 LAQSF 270
>gi|27904581|ref|NP_777707.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
[Buchnera aphidicola str. Bp (Baizongia pistaciae)]
gi|46395829|sp|Q89AZ2|FLIP_BUCBP RecName: Full=Flagellar biosynthetic protein fliP
gi|27903978|gb|AAO26812.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 360
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 92/240 (38%), Positives = 148/240 (61%), Gaps = 4/240 (1%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
L P +A I + ++T T L+ P +L+M+T F R
Sbjct: 123 LCVFLLFCPSYAYAGIPDVISHTSSDGGQIWSIPIQTLVFITSLTFIPTVLLMMTSFSRI 182
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+IVFS+LR+ +G PPN +++ L+L +TF++M+P D+ + P ++I+ TAI
Sbjct: 183 VIVFSLLRSALGTPYSPPNQILVGLSLILTFFIMAPIFDKIYQDSYLPFSEDKISIDTAI 242
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
R A+P FM N TR+ DL F +A+ + ++ + I R+L+PSF+ SEL+ +F
Sbjct: 243 VRGAKPLHKFMVNQTRQVDLEFFSKLANI----STFSRKEEIPMRVLLPSFITSELKTAF 298
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+IGF I +PFLIID++V++++M++GMMM+PP++ISLPFK++ FVL+DGW LL+ +L SF
Sbjct: 299 QIGFTIFIPFLIIDLVVSSVLMSLGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLTHSF 358
>gi|312135838|ref|YP_004003176.1| flagellar biosynthetic protein flip [Caldicellulosiruptor
owensensis OL]
gi|311775889|gb|ADQ05376.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
owensensis OL]
Length = 253
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 100/244 (40%), Positives = 155/244 (63%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
EL FA ++++ + P + + ++ TIL++ P +LIM+T
Sbjct: 13 TLLSILITVCFKKELAFATANININLGNPQNPDDISSALQLIIFLTILTLVPSILIMMTS 72
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R +IV +R +G +PPN ++I LALF+TF+VM+P D+ QP +N +IT
Sbjct: 73 FTRILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGEITS 132
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A++R P FM NTR+KDL LF+ + + + T + R+++P+F+ISEL
Sbjct: 133 QEALKRAEVPLKEFMLKNTRKKDLDLFVKLGNVN----PNTNIRDLPLRVVVPAFIISEL 188
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +FE+GFLI +PFLIIDM VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+L
Sbjct: 189 KSAFEMGFLIYVPFLIIDMTVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESL 248
Query: 242 VKSF 245
V+SF
Sbjct: 249 VRSF 252
>gi|21672367|ref|NP_660434.1| type III secretion system protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008468|sp|Q8KA37|FLIP_BUCAP RecName: Full=Flagellar biosynthetic protein fliP
gi|21622972|gb|AAM67645.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 379
Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 103/243 (42%), Positives = 144/243 (59%), Gaps = 4/243 (1%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
R + LV+A + + V+T T L+ P L+M+T F
Sbjct: 139 RIIPLFFLFLFCPLVYADIPGPTSHILRDGSQTWSLPVQTLIFLTSLTFLPAFLLMMTSF 198
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R IIVF +LR +G PPN +++ LALF+TF++MSPT D+ + P +I
Sbjct: 199 TRIIIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFDQVYKEAYLPFSQEKINMD 258
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
AI + A P FM N TR DL LF +AH S D I RIL+PSF+ SEL+
Sbjct: 259 EAIIKGAVPLKKFMLNQTRNSDLELFSKLAHISSYK----NKDEIPMRILLPSFITSELK 314
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+F+IGF I +PFLIID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LLV +L
Sbjct: 315 TAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLVTSLS 374
Query: 243 KSF 245
+SF
Sbjct: 375 QSF 377
>gi|329298603|ref|ZP_08255939.1| flagellar biosynthesis protein FliP [Plautia stali symbiont]
Length = 341
Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats.
Identities = 95/228 (41%), Positives = 145/228 (63%), Gaps = 4/228 (1%)
Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
A+ + + V+T T L+ P +L+M+T F R IIVF +LR +G
Sbjct: 116 HAQLPGLISQPLANGGQSWSLPVQTLVFITSLTFIPAVLLMITSFTRIIIVFGLLRNALG 175
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
S PPN V++ LALF+ F++M+PT D+ P ++I+ AI + A+P FM
Sbjct: 176 TPSAPPNQVMLGLALFLNFFIMAPTFDKIYTDAYLPFSQDKISMDVAIDKGAQPLREFML 235
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
TRE DL+LF +A+S+ I + + RIL+P+++ SEL+ +F+IGF + +PFLI
Sbjct: 236 RQTRETDLALFARLANSA----PIQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLI 291
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
ID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LLV +L +SF
Sbjct: 292 IDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLVGSLAQSF 339
>gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040049|gb|ACT56845.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats.
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT
Sbjct: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT
Sbjct: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE
Sbjct: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN
Sbjct: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
Query: 241 LVKSFI 246
LVKSFI
Sbjct: 241 LVKSFI 246
>gi|186477688|ref|YP_001859158.1| flagellar biosynthesis protein FliP [Burkholderia phymatum STM815]
gi|184194147|gb|ACC72112.1| flagellar biosynthetic protein FliP [Burkholderia phymatum STM815]
Length = 281
Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats.
Identities = 100/242 (41%), Positives = 153/242 (63%), Gaps = 7/242 (2%)
Query: 8 ALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
AL L P L A+++ N P + + V+T + T+LS P +++M+T F R
Sbjct: 44 ALMLAAPTLSHAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTR 103
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G + PPN V++ LALF+T +VMSP LD++ G +P I A
Sbjct: 104 IIIVLSLLRQAIGAPTTPPNQVLVGLALFLTLFVMSPVLDKAYNDGYKPFSEGTIQMDEA 163
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
++R PF FM TRE DL+LF ++H+ + + + +L+PSF+ SEL+
Sbjct: 164 VKRGVAPFKAFMLKQTRESDLALFARISHAP----PMQGPEDVPLSLLVPSFVTSELKTG 219
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF + +PF+IIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW L+V +L +S
Sbjct: 220 FQIGFTVFIPFVIIDMVVASVLMSMGMMMISPATISLPFKLMLFVLVDGWQLIVGSLAQS 279
Query: 245 FI 246
F+
Sbjct: 280 FV 281
>gi|94314220|ref|YP_587429.1| flagellar biosynthesis protein FliP [Cupriavidus metallidurans
CH34]
gi|93358072|gb|ABF12160.1| flagellar biosynthesis protein FliP [Cupriavidus metallidurans
CH34]
Length = 264
Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 102/234 (43%), Positives = 150/234 (64%), Gaps = 5/234 (2%)
Query: 14 PELVFAKSSLHDVMNI-PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
PE A+S P + ++T + T LS P ++M+T F R IIV +L
Sbjct: 34 PESALAQSLPGVTSRPGPGGGQTWSLSIQTLVLLTSLSFLPAAMLMMTGFTRIIIVLGLL 93
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R +G S PPN V++ L+LF+TF+VMSP D+ QPL N+I+ TA QR A P
Sbjct: 94 RNALGTASSPPNQVLVGLSLFLTFFVMSPVFDKVYTDAYQPLSENKISLETAAQRAAVPL 153
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
FM TREKDL++F MA + ++ + + + +L+P+F+ SEL+ +F+IGF I
Sbjct: 154 RAFMLRQTREKDLAMFAQMAKTP----ELQGPEDVPFTVLVPAFVTSELKTAFQIGFTIF 209
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+PFLIID++VA+++MAMGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 210 IPFLIIDLVVASVLMAMGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 263
>gi|291519582|emb|CBK74803.1| flagellar biosynthetic protein FliP [Butyrivibrio fibrisolvens
16/4]
Length = 284
Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats.
Identities = 93/221 (42%), Positives = 143/221 (64%), Gaps = 5/221 (2%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
+ + + +R + TIL+++P +LIM+T F R +IV +R +G + PPN
Sbjct: 68 FTLTFNGEDGNFSSTLRMLLVLTILTLSPSILIMLTSFTRCVIVLHFVRAAIGTNTAPPN 127
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
V+I LALF+T ++MSP L I P +IT+ AI P FM T+ KD
Sbjct: 128 QVLIGLALFLTLFIMSPVLTTIKTEAIDPFDAGEITQQEAIDAAIAPVREFMYGQTQTKD 187
Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
L+LF D+A ++ + D + + +++P+F++SELR +F IGFLI +PF++IDM+VA+
Sbjct: 188 LNLFCDIAGITY-----EEYDEVPFTVVVPAFILSELRTAFIIGFLIYVPFIVIDMVVAS 242
Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++M+MGMMMLPPT+ISLPFK++ FVL+DGW L++ LVK+F
Sbjct: 243 VLMSMGMMMLPPTTISLPFKILLFVLVDGWDLVIGGLVKTF 283
>gi|227355990|ref|ZP_03840382.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
gi|227163978|gb|EEI48880.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
Length = 256
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 94/242 (38%), Positives = 147/242 (60%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ + + P FA+ +P + V+T T L P +L+M+T F
Sbjct: 17 FASVLILSLLPSHAFAQFPSVISHPLPGGGQNWSLPVQTLIFITALGFIPAVLLMMTSFT 76
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R IIV +LR +G S PPN V++ LALFMTF++M+P D+ + P ++IT
Sbjct: 77 RIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYLPFSEDKITFEQ 136
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A+ ++P FM TRE DL+LF +A + D + RIL+P+++ SEL+
Sbjct: 137 ALDNGSQPLRQFMMQQTRETDLALFARLADAP----AFETRDSVPMRILVPAYITSELKT 192
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L++ +L +
Sbjct: 193 AFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLILGSLAQ 252
Query: 244 SF 245
SF
Sbjct: 253 SF 254
>gi|28211318|ref|NP_782262.1| flagellar biosynthesis protein FliP [Clostridium tetani E88]
gi|28203758|gb|AAO36199.1| flagellar biosynthetic protein fliP [Clostridium tetani E88]
Length = 261
Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 91/251 (36%), Positives = 149/251 (59%), Gaps = 10/251 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSS------LHDVMNIPADLSISTWIVRTFGIFTILSIAPI 54
+I F L + A ++ D ++ F + T LSI P
Sbjct: 14 VIGIVFLLTLLCFQQKALAAPGQIPIPRINISPGDGGDPKTYVDNLKLFLMITALSILPS 73
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
++M+T F R +VF LR MG PPN V++ LALF+T ++M+P + IQP
Sbjct: 74 FIVMMTSFVRISVVFGFLRNAMGTQQSPPNQVLVGLALFLTIFIMTPVYQIINKEAIQPF 133
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ ++I + A + ++P FM TREKDL LF+++++ T +++ +++P
Sbjct: 134 VKSEINQEQAFETGSKPLREFMLKQTREKDLKLFVEISNIDKNITK----ENVPLYVVVP 189
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
SF+ISEL+ +F+IGFL+ +PFL+ID++VA+++M+MGM MLPP +SLPFK++ FV++DGW
Sbjct: 190 SFIISELKTAFQIGFLLYIPFLVIDLVVASVLMSMGMFMLPPVMVSLPFKLLLFVMVDGW 249
Query: 235 SLLVENLVKSF 245
LL+++L+ SF
Sbjct: 250 HLLIKSLIMSF 260
>gi|197285499|ref|YP_002151371.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
gi|194682986|emb|CAR43419.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
Length = 256
Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats.
Identities = 94/242 (38%), Positives = 147/242 (60%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ + + P FA+ +P + V+T T L P +L+M+T F
Sbjct: 17 FASVLILSLLPSHAFAQFPSVISHPLPGGGQSWSLPVQTLIFITALGFIPAVLLMMTSFT 76
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R IIV +LR +G S PPN V++ LALFMTF++M+P D+ + P ++IT
Sbjct: 77 RIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYLPFSEDKITFEQ 136
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A+ ++P FM TRE DL+LF +A + D + RIL+P+++ SEL+
Sbjct: 137 ALDNGSQPLRQFMMQQTRETDLALFARLADAP----AFETRDSVPMRILVPAYITSELKT 192
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L++ +L +
Sbjct: 193 AFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLILGSLAQ 252
Query: 244 SF 245
SF
Sbjct: 253 SF 254
>gi|209884533|ref|YP_002288390.1| flagellar biosynthetic protein FliP [Oligotropha carboxidovorans
OM5]
gi|209872729|gb|ACI92525.1| flagellar biosynthetic protein FliP [Oligotropha carboxidovorans
OM5]
Length = 253
Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats.
Identities = 104/244 (42%), Positives = 161/244 (65%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + + T A + + ++ ++ + T+LSIAP +L+M+T
Sbjct: 10 VLFLSVLIAAATLATAAAAQDISINFGGQGNGGVTERAIQLIALLTVLSIAPSILVMMTS 69
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R ++V S+LRT +G + PPN V+I+LALF+T +VM P L +S + G++P++ N+++
Sbjct: 70 FTRIVVVLSLLRTALGTATAPPNSVMIALALFLTGFVMGPVLQKSYDEGVKPVIANELSV 129
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
+R P FM+ N REKDL LFMD++ T + + RILIP+FMISEL
Sbjct: 130 EQGFERAVGPLRGFMQKNVREKDLKLFMDLSGEPPPAT----PEEMSLRILIPAFMISEL 185
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+R+FEIGFL+ LPFLIID++V++++M+MGMMMLPP +SLPFK+IFFVL+DGW+L+ +L
Sbjct: 186 KRAFEIGFLLFLPFLIIDLVVSSVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWALVAGSL 245
Query: 242 VKSF 245
V+S+
Sbjct: 246 VQSY 249
>gi|91776320|ref|YP_546076.1| flagellar biosynthesis protein FliP [Methylobacillus flagellatus
KT]
gi|91710307|gb|ABE50235.1| flagellar biosynthetic protein FliP [Methylobacillus flagellatus
KT]
Length = 250
Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats.
Identities = 96/231 (41%), Positives = 142/231 (61%), Gaps = 7/231 (3%)
Query: 18 FAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
A+ ++N P + ++T + T L+ P L+M+T F R IIV S+LR
Sbjct: 23 AAEPGGLGLINSQPAPGGGQNYSLSIQTLILLTSLTFLPAALLMMTGFTRIIIVLSLLRQ 82
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G S PPN V++ LALF+TF+VM P +R QP +IT A+ R + P
Sbjct: 83 ALGTQSSPPNQVLVGLALFLTFFVMGPVFERIYTEAYQPFDEERITMQEAMVRGSIPLKE 142
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM TRE DL+LF M+ R + + + R+L+P+F+ SEL+ +F+IGF I +P
Sbjct: 143 FMLKQTRESDLALFFKMS----RADAVATPEEVPLRVLVPAFVTSELKTAFQIGFAIFIP 198
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FLIIDM+VA+I+M+MGMMM+ P ++LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 FLIIDMVVASILMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLLGSLAQSF 249
>gi|206889470|ref|YP_002249866.1| flagellar biosynthetic protein FliP [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741408|gb|ACI20465.1| flagellar biosynthetic protein FliP [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 335
Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 101/241 (41%), Positives = 147/241 (60%), Gaps = 8/241 (3%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
F L +++P L FA + L + + T+LS P +LIM+T F R
Sbjct: 102 LFSCLLILSPTLCFAAPQ-----SAQGGLFGFSSAIDILVFITLLSFLPAVLIMMTSFTR 156
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
+IV S+LR +G SVPPN VII LALF+T ++MSPT+DR PL +I A
Sbjct: 157 IVIVLSLLRQALGTPSVPPNQVIIGLALFLTLFIMSPTVDRVYNEAYLPLSKKEINMEEA 216
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
I + + PF FM TREKDL+LF ++ + + +I++P+F + EL+R+
Sbjct: 217 ISKASVPFKEFMLKQTREKDLALFFKLSKT---EVKPATPMDLPMKIVVPAFALGELKRA 273
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
FEIGFLI LPFL+ID++VA+I+++MGM M+PP IS+PFK++ FVL+DGW L++ +L
Sbjct: 274 FEIGFLIFLPFLVIDIVVASILLSMGMFMVPPVMISMPFKLLLFVLVDGWQLIIGSLAGG 333
Query: 245 F 245
F
Sbjct: 334 F 334
>gi|167645329|ref|YP_001682992.1| flagellar biosynthesis protein FliP [Caulobacter sp. K31]
gi|167347759|gb|ABZ70494.1| flagellar biosynthetic protein FliP [Caulobacter sp. K31]
Length = 266
Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 104/245 (42%), Positives = 164/245 (66%), Gaps = 6/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I + ++ P + A+S+++ +++ +S +V+ G+ T+LS+AP ++IM T
Sbjct: 21 IISVLAGLITVLGPAVAVAQSAIN--VDLGTGAGLSERVVQMVGLLTVLSLAPSIVIMTT 78
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R ++V +LRT +G+ PPN VIISLALF+T VM PT ++S + GI+PL++ QI
Sbjct: 79 SFVRIVVVLGLLRTAIGVQQSPPNPVIISLALFLTAIVMGPTFEKSYDDGIKPLLDKQIE 138
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A A P VFM + DL+LF+ ++ T + +++ P+FMISE
Sbjct: 139 MPEAFDAAAAPVKVFMLRQVDQDDLALFIRLSKIEKPKTAV----DTPLKVVTPAFMISE 194
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+R+FEIGFL+ +PFL+ID++VA+++M+MGMMMLPP ++SLPFK+IFFVL+DGW L+ +
Sbjct: 195 LKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPATVSLPFKLIFFVLVDGWRLVAGS 254
Query: 241 LVKSF 245
LV+SF
Sbjct: 255 LVESF 259
>gi|134294170|ref|YP_001117905.1| flagellar biosynthesis protein FliP [Burkholderia vietnamiensis G4]
gi|134137327|gb|ABO53070.1| flagellar biosynthetic protein FliP [Burkholderia vietnamiensis G4]
Length = 253
Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 97/246 (39%), Positives = 154/246 (62%), Gaps = 7/246 (2%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMV 59
R+ + + P L A+++ N P + + V+T + T+LS P +L+M+
Sbjct: 11 RFAPVLILGLFPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIV S+LR +G + PPN V++ LA+F+TF+VMSP LD++ G +P + +
Sbjct: 71 TSFTRIIIVLSLLRQALGTATTPPNQVLLGLAMFLTFFVMSPVLDKAYNDGYKPFSDGSL 130
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
A+QR PF FM TRE DL+LF ++ + + + +L+P+F+ S
Sbjct: 131 PMEQAVQRGVAPFKGFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTS 186
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ F+IGF I +PFLIID++VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+
Sbjct: 187 ELKTGFQIGFTIFIPFLIIDLVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246
Query: 240 NLVKSF 245
+L +SF
Sbjct: 247 SLAQSF 252
>gi|307701549|ref|ZP_07638566.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris FB024-16]
gi|307613228|gb|EFN92480.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris FB024-16]
Length = 462
Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats.
Identities = 81/210 (38%), Positives = 133/210 (63%), Gaps = 4/210 (1%)
Query: 36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95
T V F + T+LS+AP LL+M+T F + IV ++ R +G+ +PP V+ LA+F++
Sbjct: 256 PTTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLS 315
Query: 96 FYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
++M+PT++ +QPL + +I + +PF FM TRE+D++L A+
Sbjct: 316 LFIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIALMTRAANRP 375
Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
+ D + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLP
Sbjct: 376 NP----ESLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLP 431
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
P +SLPFKV+ FV++DGW +L + L+ ++
Sbjct: 432 PVMVSLPFKVLLFVMVDGWGMLTQTLIGTY 461
>gi|115523568|ref|YP_780479.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
BisA53]
gi|115517515|gb|ABJ05499.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
BisA53]
Length = 254
Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats.
Identities = 111/245 (45%), Positives = 162/245 (66%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+ L + A + + ++ ++ + T+LSIAP +LIM+T
Sbjct: 10 VFSLLLLILTAAGSLIDPASAQDISINLGGNTGGVTERAIQLIALLTVLSIAPSILIMMT 69
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R ++V S+LRT +G + PPN VI++LALF+T +VM P L +S + GI+PL+ NQIT
Sbjct: 70 SFTRIVVVLSLLRTALGTATAPPNAVILALALFLTGFVMGPVLQKSYDDGIKPLVANQIT 129
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A +R +P FM+ N REKDL LF+D++ T D + RIL+P+FMISE
Sbjct: 130 VEQAFERAVDPLRGFMQKNVREKDLKLFLDLSGEPPPAT----PDAMSLRILVPAFMISE 185
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+R+FEIGFL+ LPFL+ID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ +
Sbjct: 186 LKRAFEIGFLLFLPFLVIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGS 245
Query: 241 LVKSF 245
LV+S+
Sbjct: 246 LVQSY 250
>gi|271500076|ref|YP_003333101.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech586]
gi|270343631|gb|ACZ76396.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech586]
Length = 258
Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats.
Identities = 97/245 (39%), Positives = 155/245 (63%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++RY ++ L+ A+ +P + V+T T LS P +L+M+T
Sbjct: 16 LLRYPAASMLLLIAPHALAQLPSIISHPLPNGGQSWSLPVQTLIFITALSFIPAVLLMMT 75
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CF R IIV S+LR +G + PPN V++ L+LF+TF+VMSP L+R + +P ++I+
Sbjct: 76 CFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSEDKIS 135
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
AI + ++P FM TRE DL+LF +A + + + R+L+P+++ SE
Sbjct: 136 MEVAIDKGSKPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYVTSE 191
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF I +PFL+ID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +
Sbjct: 192 LKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGS 251
Query: 241 LVKSF 245
L +SF
Sbjct: 252 LAQSF 256
>gi|295690701|ref|YP_003594394.1| flagellar biosynthetic protein FliP [Caulobacter segnis ATCC 21756]
gi|295432604|gb|ADG11776.1| flagellar biosynthetic protein FliP [Caulobacter segnis ATCC 21756]
Length = 265
Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats.
Identities = 105/245 (42%), Positives = 160/245 (65%), Gaps = 6/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I V P A+S+++ +N+ ++ +V+ + T+LS+AP ++IM T
Sbjct: 21 IISVLAAIACAVMPAAAMAQSAVN--INLGTGAGLTDRVVQLVALMTVLSLAPSIVIMTT 78
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R ++V +LRT +G+ S PPN VIISLALF+T VM PT +RS + GI+PL++ QI
Sbjct: 79 SFVRIVVVLGLLRTAIGVQSSPPNPVIISLALFLTAIVMGPTFERSYDAGIKPLLDKQIE 138
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A + P FM + DL+LF+ ++ T + +++ P+FMISE
Sbjct: 139 LPEAFDAASGPVKQFMLSQVDRDDLALFVRLSKIPQPKT----AEDTPIKVVTPAFMISE 194
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+R+FEIGFL+ +PFL+ID++VA+++M+MGMMMLPP +ISLPFK+IFFVL+DGW L+ +
Sbjct: 195 LKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPATISLPFKLIFFVLVDGWRLVAGS 254
Query: 241 LVKSF 245
LV+SF
Sbjct: 255 LVESF 259
>gi|302670736|ref|YP_003830696.1| flagellar biosynthetic protein FliP [Butyrivibrio proteoclasticus
B316]
gi|302395209|gb|ADL34114.1| flagellar biosynthetic protein FliP [Butyrivibrio proteoclasticus
B316]
Length = 314
Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats.
Identities = 94/220 (42%), Positives = 138/220 (62%), Gaps = 4/220 (1%)
Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
+ +R T++S+AP LL+M+T F R I+ RT +G + PPNL
Sbjct: 98 TVTYDNGNGSLNGALRILITLTLISLAPTLLVMMTSFTRIIVALHFTRTAIGTQTSPPNL 157
Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
V++ +ALFMT ++M PTL + P N ++ + + +PF FM T++KD+
Sbjct: 158 VMLGIALFMTLFIMQPTLTTVYNEAVIPFENGEMDQQEFFEEAMDPFRQFMYGQTQKKDV 217
Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
LFM++ D I +LIPSF++SELR +F IGF+I +PF++IDM+VA++
Sbjct: 218 ILFMNIDGIEWDGE----LDSIPNVVLIPSFIVSELRTAFIIGFMIYIPFIVIDMVVASV 273
Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+M+MGMMMLPPT+ISLPFK++ FVL DGWSL++ NLVKSF
Sbjct: 274 LMSMGMMMLPPTTISLPFKILLFVLADGWSLIIGNLVKSF 313
>gi|253682024|ref|ZP_04862821.1| flagellar biosynthetic protein FliP [Clostridium botulinum D str.
1873]
gi|253561736|gb|EES91188.1| flagellar biosynthetic protein FliP [Clostridium botulinum D str.
1873]
Length = 257
Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats.
Identities = 93/251 (37%), Positives = 151/251 (60%), Gaps = 9/251 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDV------MNIPADLSISTWIVRTFGIFTILSIAPI 54
+ FAL ++ +A V ++ + ++ + T+LS+ P
Sbjct: 8 LFILVIFALVILGATKAYAAPDTIPVPKVNISVDKATNPKDYVDNIKLLVMLTVLSLLPS 67
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
L+M+T F R IIV +R +G PPN ++I +ALF+T ++M+PT + I+P
Sbjct: 68 FLVMMTSFTRIIIVLGFMRNALGTQQAPPNQILIGIALFLTIFIMAPTYKTINKEAIKPF 127
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ N+IT AI ++P FM TR+KDL LF+D++ + D++ ++IP
Sbjct: 128 IENKITGQQAIDNASKPMREFMLKQTRDKDLELFLDISKTDKAKI---TKDNVPMYVVIP 184
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
SF+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW
Sbjct: 185 SFIISELKTAFKIGFLLYIPFLIIDIVVASVLMSMGMFMLPPVMISLPFKILLFVMVDGW 244
Query: 235 SLLVENLVKSF 245
LLV++L+ +
Sbjct: 245 YLLVKSLIMGY 255
>gi|226327730|ref|ZP_03803248.1| hypothetical protein PROPEN_01603 [Proteus penneri ATCC 35198]
gi|225203434|gb|EEG85788.1| hypothetical protein PROPEN_01603 [Proteus penneri ATCC 35198]
Length = 256
Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats.
Identities = 95/242 (39%), Positives = 149/242 (61%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ + L+ P FA+ +P + V+T T L P +L+M+T F
Sbjct: 17 FASVLVLLLLPTSAFAQFPGIITQPLPGGGQSWSLPVQTLIFITALGFIPAVLLMMTSFT 76
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R IIV +LR +G S PPN V++ LALFMTF++M+P D+ + P +QIT
Sbjct: 77 RIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYMPFTEDQITFEQ 136
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A++ ++P FM TRE DL+LF +A + + + RIL+P+++ SEL+
Sbjct: 137 ALENGSKPLRQFMMQQTRETDLALFARLADAP----AFETRESVPMRILVPAYITSELKT 192
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L++ +L +
Sbjct: 193 AFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLILGSLAQ 252
Query: 244 SF 245
SF
Sbjct: 253 SF 254
>gi|147678411|ref|YP_001212626.1| flagellar biosynthesis protein FliP [Pelotomaculum
thermopropionicum SI]
gi|146274508|dbj|BAF60257.1| flagellar biosynthesis pathway, component FliP [Pelotomaculum
thermopropionicum SI]
Length = 257
Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats.
Identities = 98/231 (42%), Positives = 146/231 (63%), Gaps = 4/231 (1%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
++ + V+ + T+LS+AP L+M+T F R IIV S+LRT
Sbjct: 30 APAAPLPAVDLSIRPADSPDQVVDSVKLLVLLTLLSLAPAFLVMMTSFTRIIIVLSLLRT 89
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G+ P N ++I LALF+T ++M+P + IQP + NQI++ A +R +P
Sbjct: 90 ALGVHQAPANQIVIGLALFLTVFIMAPVYREINDNSIQPYLQNQISQEEAQERGVKPLRD 149
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM TREKDL LF+ +A K + + ++IPSF+ISEL+ +FEIGFL+ +P
Sbjct: 150 FMLRQTREKDLGLFISLAKMEKP----EKPEDVPLHVVIPSFIISELKTAFEIGFLLFVP 205
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FL+IDM+VA+I+M+MGM MLPP ISLPFK++ FV++DGW L+V++LV+SF
Sbjct: 206 FLVIDMVVASILMSMGMFMLPPVMISLPFKILLFVMVDGWYLVVKSLVESF 256
>gi|225375339|ref|ZP_03752560.1| hypothetical protein ROSEINA2194_00964 [Roseburia inulinivorans DSM
16841]
gi|225212828|gb|EEG95182.1| hypothetical protein ROSEINA2194_00964 [Roseburia inulinivorans DSM
16841]
Length = 273
Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats.
Identities = 100/231 (43%), Positives = 147/231 (63%), Gaps = 5/231 (2%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
S+ ++ D + V+ + TILS+AP +LIM+T + R IIV LRT
Sbjct: 47 TRAAEDSTNGLTISYNNDGGSLSAPVKMLLVLTILSLAPSILIMLTSYTRIIIVLHFLRT 106
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G + PPN V+I+LALF+TF++M PT + IQPL +IT A P
Sbjct: 107 AIGTQTAPPNQVLIALALFLTFFIMWPTFQQINTEAIQPLDKGEITTEEAFTVAQGPIRE 166
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM T+EKDL LF+D++ ++ D + LIP+F++SELR +F IGF+I +P
Sbjct: 167 FMYGQTQEKDLKLFVDISDETY-----DSYDDVPMTTLIPAFILSELRAAFIIGFVIYIP 221
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
F++IDM+VA+++M+MGMMMLPPT+ISLPFK++ F+L DGW L++ +LVK+F
Sbjct: 222 FIVIDMVVASVLMSMGMMMLPPTTISLPFKILLFILADGWDLVIGSLVKTF 272
>gi|118589975|ref|ZP_01547379.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614]
gi|118437472|gb|EAV44109.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614]
Length = 247
Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats.
Identities = 133/247 (53%), Positives = 173/247 (70%), Gaps = 1/247 (0%)
Query: 1 MIRYCFFALFLVT-PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
M R L LV A+ + + S S I++ + T+LS+AP +LIMV
Sbjct: 1 MSRLLVAGLVLVAMTGAAAAQVPDLSALLPAGEGSASGRIIQMIALLTVLSLAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F RF+I FS LR+G+G+ + P NL++ISLALFMTFYVM+PT D++ E G+QPLMNN+I
Sbjct: 61 TSFTRFVIAFSFLRSGIGLQTTPGNLILISLALFMTFYVMAPTFDKAWEQGVQPLMNNEI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
+E A R+ PF FM + RE+DL LF D+A + + + ++ R+LIP+FMIS
Sbjct: 121 SEEEAYVRITTPFRDFMLSQVREEDLVLFDDLAAGRVTDNEAASAEEVDLRVLIPAFMIS 180
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
ELRR FEIGFLI LPFL+IDMIVATI M+MGMMMLPPT ISLPFK +FFVLIDGW+LLV
Sbjct: 181 ELRRGFEIGFLIALPFLVIDMIVATITMSMGMMMLPPTVISLPFKALFFVLIDGWNLLVG 240
Query: 240 NLVKSFI 246
+LV+SF+
Sbjct: 241 SLVRSFL 247
>gi|229827384|ref|ZP_04453453.1| hypothetical protein GCWU000182_02772 [Abiotrophia defectiva ATCC
49176]
gi|229788322|gb|EEP24436.1| hypothetical protein GCWU000182_02772 [Abiotrophia defectiva ATCC
49176]
Length = 283
Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats.
Identities = 87/225 (38%), Positives = 142/225 (63%), Gaps = 4/225 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
++ + D +R T+L +AP +LI++T F R I+V +R+ + +
Sbjct: 62 NIGINLTTNGDQGGLAATLRIVLALTVLGLAPSILILLTSFTRIIVVLHFVRSALTTQTT 121
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN V++ LALF+T+++M+P + ++PL + +I A + +P FM T
Sbjct: 122 PPNQVLVGLALFLTWFIMAPIFMQINTEALKPLTDGKINFEQAYEVGIKPLRTFMYKQTN 181
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KD+ LF+D+A ++ + I +LIP+F+ISELR +F IGF I +PFL+IDM+
Sbjct: 182 TKDIRLFLDIAGI----DEVKDMEEIPTNVLIPAFIISELRAAFIIGFCIYIPFLVIDMV 237
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
V++ +M+MGMMMLPPT+IS+PFK++ F+++DGW L++ NLVKSF+
Sbjct: 238 VSSTLMSMGMMMLPPTTISMPFKILLFIMVDGWDLVIGNLVKSFV 282
>gi|299131778|ref|ZP_07024973.1| flagellar biosynthetic protein FliP [Afipia sp. 1NLS2]
gi|298591915|gb|EFI52115.1| flagellar biosynthetic protein FliP [Afipia sp. 1NLS2]
Length = 252
Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats.
Identities = 107/244 (43%), Positives = 160/244 (65%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + + FA+ + ++ ++ + T+LS+AP +L+M+T
Sbjct: 10 VLFLSVLIAATLATPAFAQDISINFGQGADGGGVTARAIQLIALLTVLSVAPSILVMMTS 69
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R ++V S+LRT MG + PPN V+I+LALF+T +VM P L +S + G++P++ NQ+T
Sbjct: 70 FTRIVVVLSLLRTAMGTATAPPNSVMIALALFLTGFVMGPVLQKSYDDGVKPVIANQLTV 129
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
+ P FM+ N REKDL LFMD++ T D + RILIP+FMISEL
Sbjct: 130 EQGLPLAIAPLRGFMQKNVREKDLKLFMDLSREPPPAT----PDEMSLRILIPAFMISEL 185
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+R+FEIGFL+ LPFLIID++V++++M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ +L
Sbjct: 186 KRAFEIGFLLFLPFLIIDLVVSSVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSL 245
Query: 242 VKSF 245
V+S+
Sbjct: 246 VQSY 249
>gi|78064698|ref|YP_367467.1| flagellar biosynthesis protein FliP [Burkholderia sp. 383]
gi|77965443|gb|ABB06823.1| Flagellar transport protein FliP [Burkholderia sp. 383]
Length = 253
Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats.
Identities = 99/246 (40%), Positives = 155/246 (63%), Gaps = 7/246 (2%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIMV 59
R+ + + P L FA+++ N P + + V+T + T+LS P +L+M+
Sbjct: 11 RFAPVLILCLAPALAFAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + +
Sbjct: 71 TSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSM 130
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
A+QR PF FM TRE DL+LF ++ + + + +L+P+F+ S
Sbjct: 131 PMEQAVQRGVAPFKTFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTS 186
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ F+IGF + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+
Sbjct: 187 ELKTGFQIGFTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246
Query: 240 NLVKSF 245
+L +SF
Sbjct: 247 SLAQSF 252
>gi|187935306|ref|YP_001885056.1| flagellar biosynthetic protein FliP [Clostridium botulinum B str.
Eklund 17B]
gi|187723459|gb|ACD24680.1| flagellar biosynthetic protein FliP [Clostridium botulinum B str.
Eklund 17B]
Length = 259
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 93/251 (37%), Positives = 151/251 (60%), Gaps = 10/251 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDV-------MNIPADLSISTWIVRTFGIFTILSIAPI 54
+ FA+ +A D+ + + + ++ FTIL++ P
Sbjct: 11 VLILAFAIITFCGIKAYAVPEGIDLPQVNVAIGDGESSPNDYVNNIKILIFFTILAVLPS 70
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
++IM+T F R +IVFS +++ MG+ PN ++ LALF+T ++MSP + QP
Sbjct: 71 IVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIMSPVYNEVNTKAFQPY 130
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ IT+ AI+ ++P FM TREKDL LF+++ + + + + + LIP
Sbjct: 131 VEQSITQEEAIEIGSKPIKDFMLKQTREKDLELFVEINNVNKEE---LTRESVPFTTLIP 187
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
+F ISEL+ +F++GFLI LPF++IDM+VA+++M+MGMMMLPP +SLPFK++ FV++DGW
Sbjct: 188 AFAISELKTAFQMGFLIYLPFIVIDMVVASVLMSMGMMMLPPAMVSLPFKLLLFVMVDGW 247
Query: 235 SLLVENLVKSF 245
LLV++L+ SF
Sbjct: 248 YLLVKSLIMSF 258
>gi|188589499|ref|YP_001920217.1| flagellar biosynthetic protein FliP [Clostridium botulinum E3 str.
Alaska E43]
gi|251778351|ref|ZP_04821271.1| flagellar biosynthetic protein FliP [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|188499780|gb|ACD52916.1| flagellar biosynthetic protein FliP [Clostridium botulinum E3 str.
Alaska E43]
gi|243082666|gb|EES48556.1| flagellar biosynthetic protein FliP [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 259
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 95/251 (37%), Positives = 151/251 (60%), Gaps = 10/251 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDV-------MNIPADLSISTWIVRTFGIFTILSIAPI 54
+ FA+ +A D+ + + + ++ FTIL++ P
Sbjct: 11 VLVLAFAIITFCGIKAYAVPEGIDLPQVNVAIGDGESSPNDYVNNIKILIFFTILAVLPS 70
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
++IM+T F R +IVFS +++ MG+ PN ++ LALF+T ++MSP + QP
Sbjct: 71 IVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIMSPVYNEVNTKAFQPY 130
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ IT+ AI+ ++P FM TREKDL LF+++ + ++I + LIP
Sbjct: 131 IEQSITQEEAIEIGSKPIKDFMLKQTREKDLELFVEINNVDKEE---LTRENIPFTTLIP 187
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
+F ISEL+ +F+IGFLI LPF++IDM+VA+++M+MGMMMLPP +SLPFK++ FV++DGW
Sbjct: 188 AFAISELKTAFQIGFLIYLPFIVIDMVVASVLMSMGMMMLPPAMVSLPFKLLLFVMVDGW 247
Query: 235 SLLVENLVKSF 245
LLV++L+ SF
Sbjct: 248 YLLVKSLIMSF 258
>gi|331269328|ref|YP_004395820.1| flagellar biosynthetic protein FliP [Clostridium botulinum
BKT015925]
gi|329125878|gb|AEB75823.1| flagellar biosynthetic protein FliP [Clostridium botulinum
BKT015925]
Length = 257
Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 92/251 (36%), Positives = 151/251 (60%), Gaps = 9/251 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDV------MNIPADLSISTWIVRTFGIFTILSIAPI 54
+ FAL ++ +A V ++ + ++ + T+LS+ P
Sbjct: 8 LFILIVFALVILGATKAYAAPDTIPVPKVNISVDKATNPKDYVDNIKLLVMLTVLSLLPS 67
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
L+M+T F R IIV +R +G PPN ++I +ALF+T ++M+PT + I+P
Sbjct: 68 FLVMMTSFTRIIIVLGFMRNALGTQQAPPNQILIGIALFLTIFIMAPTYKTINKEAIKPF 127
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ N+IT A+ ++P FM TR+KDL LF+D++ + D++ ++IP
Sbjct: 128 LENKITGQQAMDNASKPMREFMLKQTRDKDLELFLDVSKTDKTKI---TKDNVPMYVVIP 184
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
SF+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW
Sbjct: 185 SFIISELKTAFKIGFLLYIPFLIIDIVVASVLMSMGMFMLPPVMISLPFKILLFVMVDGW 244
Query: 235 SLLVENLVKSF 245
LLV++L+ +
Sbjct: 245 YLLVKSLIMGY 255
>gi|92116943|ref|YP_576672.1| flagellar biosynthesis protein FliP [Nitrobacter hamburgensis X14]
gi|91799837|gb|ABE62212.1| flagellar biosynthetic protein FliP [Nitrobacter hamburgensis X14]
Length = 251
Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 112/245 (45%), Positives = 166/245 (67%), Gaps = 5/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + FA+ + + + ++ ++ + T+LSIAP +LIM+T
Sbjct: 10 VLFVLVLIAAGSLADPAFAQD-ISINLGGAGNGGVTERAIQLIALLTVLSIAPSILIMMT 68
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R ++V S+LRT +G + PPN VII+LA+F+T +VM PTL +S + GI+PL+ NQIT
Sbjct: 69 SFTRIVVVLSLLRTALGTATAPPNSVIIALAMFLTAFVMGPTLQKSYDDGIKPLVANQIT 128
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+QR + P FM+ N RE+DL LF+D++ T + RIL+P+FMISE
Sbjct: 129 VEEALQRASVPLRGFMQKNVREQDLKLFIDLSGEPPPATPA----DLSLRILMPAFMISE 184
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ +
Sbjct: 185 LKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGS 244
Query: 241 LVKSF 245
LV+S+
Sbjct: 245 LVQSY 249
>gi|206561840|ref|YP_002232605.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia
J2315]
gi|198037882|emb|CAR53826.1| flagellar biosynthetic protein FliP precursor [Burkholderia
cenocepacia J2315]
Length = 253
Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 99/246 (40%), Positives = 154/246 (62%), Gaps = 7/246 (2%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIMV 59
R + + P L +A+++ N P + + V+T + T+LS P +L+M+
Sbjct: 11 RVAPVLILCLAPALAYAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + +
Sbjct: 71 TSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSM 130
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
A+QR PF FM TRE DL+LF ++ + D + +L+P+F+ S
Sbjct: 131 PMEQAVQRGVAPFKTFMLKQTRETDLALFAKISK----AAPMQGPDDVPLSLLVPAFVTS 186
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ F+IGF + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+
Sbjct: 187 ELKTGFQIGFTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246
Query: 240 NLVKSF 245
+L +SF
Sbjct: 247 SLAQSF 252
>gi|107021595|ref|YP_619922.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia AU
1054]
gi|116688061|ref|YP_833684.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia
HI2424]
gi|170731411|ref|YP_001763358.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia
MC0-3]
gi|254246638|ref|ZP_04939959.1| Flagellar biosynthesis pathway, component FliP [Burkholderia
cenocepacia PC184]
gi|105891784|gb|ABF74949.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia AU
1054]
gi|116646150|gb|ABK06791.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia
HI2424]
gi|124871414|gb|EAY63130.1| Flagellar biosynthesis pathway, component FliP [Burkholderia
cenocepacia PC184]
gi|169814653|gb|ACA89236.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia
MC0-3]
Length = 253
Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 98/246 (39%), Positives = 154/246 (62%), Gaps = 7/246 (2%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIMV 59
R + + P L +A+++ N P + + V+T + T+LS P +L+M+
Sbjct: 11 RVAPVLILCLAPALAYAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + +
Sbjct: 71 TSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSM 130
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
A+QR PF FM TRE DL+LF ++ + + + +L+P+F+ S
Sbjct: 131 PMEQAVQRGVAPFKTFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTS 186
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ F+IGF + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+
Sbjct: 187 ELKTGFQIGFTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246
Query: 240 NLVKSF 245
+L +SF
Sbjct: 247 SLAQSF 252
>gi|307131599|ref|YP_003883615.1| flagellar biosynthesis protein fliP [Dickeya dadantii 3937]
gi|306529128|gb|ADM99058.1| Flagellar biosynthesis protein fliP [Dickeya dadantii 3937]
Length = 258
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 95/245 (38%), Positives = 155/245 (63%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++RY ++ L+ A+ + + ++T T LS P +L+M+T
Sbjct: 16 LLRYPAASILLLIAPHALAQLPGIISQPLANGGQSWSLPIQTLVFITSLSFIPAVLLMMT 75
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CF R IIV S+LR +G + PPN V++ L+LF+TF+VMSP L+R + +P ++I+
Sbjct: 76 CFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSEDKIS 135
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
AI++ ++P FM TRE DL+LF +A + + + R+L+P+++ SE
Sbjct: 136 MEVAIEKGSQPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYVTSE 191
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF I +PFL+ID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +
Sbjct: 192 LKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGS 251
Query: 241 LVKSF 245
L +SF
Sbjct: 252 LAQSF 256
>gi|27380927|ref|NP_772456.1| flagellar biosynthesis protein FliP [Bradyrhizobium japonicum USDA
110]
gi|27354093|dbj|BAC51081.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110]
Length = 250
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 118/244 (48%), Positives = 167/244 (68%), Gaps = 5/244 (2%)
Query: 3 RYCFFALFLVTPELV-FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
R F ++ + L A + + ++ ++ + T+LSIAP +LIM+T
Sbjct: 9 RVLFLSVLIGAASLAGLAHAQDISINLGGQGGGVTERAIQLIALLTVLSIAPSILIMMTS 68
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R ++V S+LRT MG + PPN VII+LA+F+TF+VM P L +S + GI+PL+ NQI
Sbjct: 69 FTRIVVVLSLLRTAMGTATAPPNSVIIALAMFLTFFVMGPVLQKSYDEGIRPLVANQIGV 128
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+QR + P FM+ N REKDL LF+D++ T D + RILIP+FMISEL
Sbjct: 129 EDALQRASVPLRGFMQKNVREKDLKLFLDLSGEPPPAT----PDELALRILIPAFMISEL 184
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP +ISLPFK+IFFVL+DGWSL+ +L
Sbjct: 185 KRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPATISLPFKLIFFVLVDGWSLVAGSL 244
Query: 242 VKSF 245
V+S+
Sbjct: 245 VQSY 248
>gi|73539701|ref|YP_300068.1| flagellar biosynthesis protein FliP [Ralstonia eutropha JMP134]
gi|72123038|gb|AAZ65224.1| Flagellar transport protein FliP [Ralstonia eutropha JMP134]
Length = 265
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 99/218 (45%), Positives = 147/218 (67%), Gaps = 4/218 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
P I + ++T + T LS P ++M+T F R +IV +LR +G S PPN V++
Sbjct: 51 GPGGGQIWSLSIQTLVLLTSLSFLPAAVLMMTGFTRIVIVLGLLRNALGTASSPPNQVLV 110
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
L+LF+TF+VMSP LDR +PL N+I+ TA+ + AEP FM TREKDL++F
Sbjct: 111 GLSLFLTFFVMSPVLDRVYNDAYKPLSENRISLETAMAKAAEPLKGFMLKQTREKDLAMF 170
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
MA + ++ + + IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+++MA
Sbjct: 171 AQMAKAP----EMQGPEEVPMSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMA 226
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 227 MGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 264
>gi|170698077|ref|ZP_02889158.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria
IOP40-10]
gi|170137038|gb|EDT05285.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria
IOP40-10]
Length = 253
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 98/246 (39%), Positives = 154/246 (62%), Gaps = 7/246 (2%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMV 59
R+ + + P L A+++ N P + + V+T + T+LS P +L+M+
Sbjct: 11 RFAPVLILGLVPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + +
Sbjct: 71 TSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPFSDGSM 130
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
A++R PF FM TRE DL+LF ++ + + + +L+P+F+ S
Sbjct: 131 PMEQAVRRGVAPFKTFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTS 186
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+
Sbjct: 187 ELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246
Query: 240 NLVKSF 245
+L +SF
Sbjct: 247 SLAQSF 252
>gi|254470348|ref|ZP_05083752.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062]
gi|211960659|gb|EEA95855.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062]
Length = 248
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 113/244 (46%), Positives = 163/244 (66%), Gaps = 5/244 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I FALFL A+S D S++ V+ + T+LS+AP +LIMVT
Sbjct: 8 IGLLVFALFLFWFGPAAAQSISID-FGGGEGDSVTERAVQLVMLLTVLSLAPSILIMVTS 66
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R ++V S+LR+ +G+ + PPN V++SLALF+T +VM P + + ++G +P++ I
Sbjct: 67 FTRIVVVLSLLRSAIGLQTAPPNAVMLSLALFLTAFVMMPAFETAWDLGAKPMIEGTIEP 126
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A +R +EPF FMR RE DL LF ++A + T + + R+L+P+FMISEL
Sbjct: 127 QEAFERASEPFHQFMRQQVRESDLLLFQELAKAPTPET----PEDLSLRVLVPAFMISEL 182
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
RR+FEIGFL+ LPFLIID+++A+++M+MGMMMLPP ISLPFK+IFFVL+DGW L+ +L
Sbjct: 183 RRAFEIGFLLYLPFLIIDLVIASVLMSMGMMMLPPIVISLPFKLIFFVLVDGWQLIAGSL 242
Query: 242 VKSF 245
V+SF
Sbjct: 243 VRSF 246
>gi|302037618|ref|YP_003797940.1| flagellar biosynthetic protein FliP [Candidatus Nitrospira
defluvii]
gi|300605682|emb|CBK42015.1| Flagellar biosynthetic protein FliP, export component [Candidatus
Nitrospira defluvii]
Length = 266
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 102/239 (42%), Positives = 149/239 (62%), Gaps = 4/239 (1%)
Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
L +A + + +++ +FT+LS+AP L IMVT F R +
Sbjct: 31 IFACLFVATSAYADGPSLTIDLGQGGSKQTAVVLQILALFTVLSLAPALFIMVTSFTRMV 90
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IV S LR MG VPPN V+ISLALF+T +VM+P + +QPL+ QI A
Sbjct: 91 IVLSFLRQAMGTQQVPPNQVLISLALFLTMFVMAPVGQAVYKDALQPLLAEQIGYEDAWN 150
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
R +P FM R+KDL LFM+++H+ T+ + + ++IP+F++SELR +F+
Sbjct: 151 RGIQPIRAFMLKQMRDKDLELFMELSHAPK----ATQVEQVPIHVIIPAFVLSELRIAFQ 206
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGFL+ +PFLI+DM+VA+++M+MGMM+LPP ISLPFK+I FVL DGW L+V ++V+SF
Sbjct: 207 IGFLLYIPFLIVDMVVASVLMSMGMMLLPPVMISLPFKLILFVLADGWYLVVGSMVRSF 265
>gi|83589638|ref|YP_429647.1| flagellar biosynthesis protein FliP [Moorella thermoacetica ATCC
39073]
gi|83572552|gb|ABC19104.1| flagellar biosynthetic protein FliP [Moorella thermoacetica ATCC
39073]
Length = 317
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 94/234 (40%), Positives = 148/234 (63%), Gaps = 8/234 (3%)
Query: 16 LVFAKSSLHDVMNI----PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
A+ +N+ D VR + T+L++AP L++++T F R I+V S
Sbjct: 88 PALAQPVPVPQVNLNLAQTTDPRQVVDTVRLLILLTVLALAPALVLLMTSFTRIIVVLSF 147
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
+R+ + PPN ++I LALF+TF++M+P ++ I P + +IT+ A+ A P
Sbjct: 148 VRSALATQQTPPNQILIGLALFLTFFIMAPVYNQVKTQAIDPYLAGRITQEQALAAGARP 207
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
FM TREKDL+LF+ M+ + T D + +LIP+F+ISEL+ +F++GFLI
Sbjct: 208 VREFMYRQTREKDLALFVHMSGMAQPRT----RDDVPLHVLIPAFIISELKTAFQMGFLI 263
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIID+++A+ +MAMGM M+PP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 264 YIPFLIIDLVIASTLMAMGMFMVPPVMISLPFKLMLFVLVDGWYLVVKSLLESF 317
>gi|315121841|ref|YP_004062330.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495243|gb|ADR51842.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 246
Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats.
Identities = 211/246 (85%), Positives = 232/246 (94%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
MIRY FF F V PE VFA+SSLHD+M IP +LS+STWIVRTFG+FTILSI PILLIMVT
Sbjct: 1 MIRYLFFGFFFVVPESVFAQSSLHDIMEIPPNLSVSTWIVRTFGLFTILSIVPILLIMVT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CFPRFIIVFSILRTGMGMGS+PPNLVIISLALFMTFYVMSPTLDRSIEMG+QPL++N+IT
Sbjct: 61 CFPRFIIVFSILRTGMGMGSIPPNLVIISLALFMTFYVMSPTLDRSIEMGVQPLISNKIT 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
ET AI+R+AEPFW+FM+NNTREKDL LFM+MA S+H+NTDI K+DHIEYRILIPSFMISE
Sbjct: 121 ETVAIKRIAEPFWIFMKNNTREKDLFLFMEMAKSTHKNTDIKKDDHIEYRILIPSFMISE 180
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK+IFFVLIDGW LLVEN
Sbjct: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKIIFFVLIDGWGLLVEN 240
Query: 241 LVKSFI 246
LV+SF+
Sbjct: 241 LVRSFV 246
>gi|92114088|ref|YP_574016.1| flagellar biosynthesis protein FliP [Chromohalobacter salexigens
DSM 3043]
gi|91797178|gb|ABE59317.1| flagellar biosynthetic protein FliP [Chromohalobacter salexigens
DSM 3043]
Length = 249
Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats.
Identities = 104/246 (42%), Positives = 153/246 (62%), Gaps = 5/246 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI-PADLSISTWIVRTFGIFTILSIAPILLIMV 59
M+R L L P + + V + ++T + L+ P LL+ +
Sbjct: 6 MLRCGLAVLLLAWPAFGWGQEISGIVSEPTGDGGQQWSLSLQTLLFLSSLAFLPALLLGM 65
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
TCF R IIV S+LRT +G S PPN V++ LALFMTF++MSP LDR E P +I
Sbjct: 66 TCFTRIIIVLSLLRTAIGTQSTPPNQVLLGLALFMTFFIMSPVLDRVHEQAWVPFSEERI 125
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
+ A+++ ++PF FM TRE DL+LF MA ++ + + R+LIP+F+ S
Sbjct: 126 SLEQALEQGSQPFREFMFGQTRETDLALFARMA----DADEMQGPEDVPMRLLIPAFLTS 181
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+
Sbjct: 182 ELKTAFQIGFSIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLIG 241
Query: 240 NLVKSF 245
+L +SF
Sbjct: 242 SLAESF 247
>gi|86356318|ref|YP_468210.1| flagellar biosynthesis protein FliP [Rhizobium etli CFN 42]
gi|86280420|gb|ABC89483.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CFN
42]
Length = 245
Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats.
Identities = 154/246 (62%), Positives = 200/246 (81%), Gaps = 3/246 (1%)
Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
MIR+ F A + PEL A+ D++N+P D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1 MIRFIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61 TSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
ET A+QR+AEPF FM NTR+KDL+LF+D+A R +I D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLARE--RGQNIQTTDPIDYRVLIPAFMIS 178
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238
Query: 240 NLVKSF 245
+LV+SF
Sbjct: 239 SLVRSF 244
>gi|254504560|ref|ZP_05116711.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11]
gi|222440631|gb|EEE47310.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11]
Length = 255
Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats.
Identities = 108/243 (44%), Positives = 163/243 (67%), Gaps = 7/243 (2%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
F + A+ + D +++ V+ + T+LS+AP +L+MVT F
Sbjct: 17 SIAFAMGAIALTLPAHAQE---ISVGFGDDANLTERAVQLVILLTVLSLAPSILVMVTSF 73
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R ++V S+LR+ +G+ + PPN+V++SLALF++ ++M PTL + + G+QPL++ I
Sbjct: 74 TRIVVVLSLLRSAIGLQTAPPNMVMVSLALFLSAFIMMPTLQAAYDAGVQPLIDGDIEID 133
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
A +R +EPF FM + REKDL LF +++ T + +E +LIP+FMISELR
Sbjct: 134 QAYERASEPFRDFMLSQVREKDLMLFQELSGRDAPET----PEDLEMAVLIPAFMISELR 189
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
R+FEIGFL+ LPFLIID+++A+++M+MGMMMLPP ISLPFK+IFFVL+DGW+L+ +LV
Sbjct: 190 RAFEIGFLLYLPFLIIDLVIASVLMSMGMMMLPPVVISLPFKLIFFVLVDGWNLVAGSLV 249
Query: 243 KSF 245
KSF
Sbjct: 250 KSF 252
>gi|190890369|ref|YP_001976911.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
652]
gi|190695648|gb|ACE89733.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
652]
gi|327193042|gb|EGE59954.1| flagellar biosynthesis transmembrane protein [Rhizobium etli
CNPAF512]
Length = 245
Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats.
Identities = 154/246 (62%), Positives = 200/246 (81%), Gaps = 3/246 (1%)
Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
MIR+ F A + PEL A+ D++N+P D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1 MIRFIIFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61 TSFPRFVIAFSILRSGMGISSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
ET A+QR+AEPF FM NTR+KDL+LF+D+A R +I D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLARE--RGQNIQTTDPIDYRVLIPAFMIS 178
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238
Query: 240 NLVKSF 245
+LV+SF
Sbjct: 239 SLVRSF 244
>gi|187778762|ref|ZP_02995235.1| hypothetical protein CLOSPO_02357 [Clostridium sporogenes ATCC
15579]
gi|187772387|gb|EDU36189.1| hypothetical protein CLOSPO_02357 [Clostridium sporogenes ATCC
15579]
Length = 258
Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats.
Identities = 96/244 (39%), Positives = 151/244 (61%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I + + P+ ++ ++ + + ++ + T+L++ P ++M+T
Sbjct: 18 IVFFYSVKAYAAPQNTLPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTS 77
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VF LR MG PPN V+I LALF+T ++M P IQP M N+IT+
Sbjct: 78 FVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMRPVYTEINTKAIQPYMKNKITQ 137
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A++ A+P FM TR+KDL LF+D+ + + T D+ I++P+F+ISEL
Sbjct: 138 EQAVEIGAKPLRQFMLKQTRQKDLKLFVDLGKPNFKVTK----DNAPLDIVVPAFIISEL 193
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LLV++L
Sbjct: 194 KTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSL 253
Query: 242 VKSF 245
V SF
Sbjct: 254 VMSF 257
>gi|296445179|ref|ZP_06887139.1| flagellar biosynthetic protein FliP [Methylosinus trichosporium
OB3b]
gi|296257353|gb|EFH04420.1| flagellar biosynthetic protein FliP [Methylosinus trichosporium
OB3b]
Length = 243
Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats.
Identities = 123/245 (50%), Positives = 168/245 (68%), Gaps = 3/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M R ++ P A+ + + + S IV+ + T+LSIAP LLIMVT
Sbjct: 1 MKRLALLLTLVLLPGCALAEGFDLNALLPAGGGAASGKIVQLLAVLTVLSIAPGLLIMVT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F RF I S LR+G+G+ S P NLV+ISLALFMTFYVM+PT + + + G++PLM+ +IT
Sbjct: 61 SFTRFAIALSFLRSGLGLQSTPANLVLISLALFMTFYVMAPTFEAAWQDGLKPLMDQKIT 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
E A +++++PF FM N REKD+ LF ++ D D + ++L P+FMISE
Sbjct: 121 EVEAFEKISQPFRKFMIANVREKDIKLFDSLSREPRPAGDY---DKLGLQVLAPAFMISE 177
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LRR FEIGFLI+LPFL+IDMIVA + M+MGMMMLPPT+ISLP KV+FF+LIDGW+LLV +
Sbjct: 178 LRRGFEIGFLIVLPFLVIDMIVAVVTMSMGMMMLPPTAISLPVKVLFFILIDGWNLLVGS 237
Query: 241 LVKSF 245
L++S+
Sbjct: 238 LIRSY 242
>gi|307731352|ref|YP_003908576.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1003]
gi|307585887|gb|ADN59285.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1003]
Length = 277
Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats.
Identities = 103/242 (42%), Positives = 153/242 (63%), Gaps = 7/242 (2%)
Query: 8 ALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
AL L P L FA+++ N P + + V+T + T+LS P +++M+T F R
Sbjct: 40 ALMLALPTLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTR 99
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G + PPN V++ LALF+T +VMSP LD++ G +P + TA
Sbjct: 100 IIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGTVPMETA 159
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+ R PF FM TRE DL+LF ++H + + + +L+PSF+ SEL+
Sbjct: 160 VSRGLAPFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTG 215
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +S
Sbjct: 216 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQS 275
Query: 245 FI 246
F+
Sbjct: 276 FV 277
>gi|258514015|ref|YP_003190237.1| flagellar biosynthesis protein FliP [Desulfotomaculum acetoxidans
DSM 771]
gi|257777720|gb|ACV61614.1| flagellar biosynthetic protein FliP [Desulfotomaculum acetoxidans
DSM 771]
Length = 256
Score = 218 bits (555), Expect = 5e-55, Method: Composition-based stats.
Identities = 96/244 (39%), Positives = 149/244 (61%), Gaps = 8/244 (3%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNI----PADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
++ P L +A+ +N+ + + ++ + TILS+ P +L+M+T
Sbjct: 16 IVFSAVLLPRLAWAEPIPIPNINLNVGQSENPAQVVDSIKLLVLLTILSLIPAILLMMTS 75
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R +IV S LR +G PPN V+I LALF+T ++M P + E ++P + NQIT+
Sbjct: 76 FTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTVFIMKPVYNDLNEQALKPYLANQITQ 135
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A R A P FM TRE DL+LF+ +A + + + ++IP+F+ISEL
Sbjct: 136 EEAQNRAAGPLKEFMLKQTRESDLALFIGVAKAQKP----QNRNDVPLHLVIPAFIISEL 191
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ SF++GFLI +PFL+ID +VA+ +M+MGM MLPP SLPFK++ FV++DGW L+V++L
Sbjct: 192 KTSFQMGFLIYIPFLVIDAVVASTLMSMGMFMLPPAMFSLPFKLLLFVMVDGWYLVVKSL 251
Query: 242 VKSF 245
V+SF
Sbjct: 252 VESF 255
>gi|167770202|ref|ZP_02442255.1| hypothetical protein ANACOL_01545 [Anaerotruncus colihominis DSM
17241]
gi|167667524|gb|EDS11654.1| hypothetical protein ANACOL_01545 [Anaerotruncus colihominis DSM
17241]
Length = 270
Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats.
Identities = 93/243 (38%), Positives = 143/243 (58%), Gaps = 4/243 (1%)
Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
L + A + + + ++ + T+L++AP +LIM+T F R I
Sbjct: 27 LLLLVCCTITAHAAPMVTVDLGSGDASGNAFGLIDMLFVVTLLALAPSILIMMTSFTRII 86
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IV S LR +G+ PPN V+I LALF+T ++M P +++ E QP QIT+ A+
Sbjct: 87 IVLSFLRNALGIQQTPPNQVLIGLALFLTLFIMFPVINQINEEAYQPYRQGQITQEEAVT 146
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD----ITKNDHIEYRILIPSFMISELR 182
R P FM TR D++LF+ +A+ + I+IP+F+ SEL+
Sbjct: 147 RGIRPLKEFMIRQTRTDDVNLFLSIANDKRPPEQAITIPEDLTELGMEIVIPAFITSELK 206
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
++F IGFL+ +PFLIIDM+V++ +M+MGM+MLPP+ ISLPFK++ FV++DGW LL+ NLV
Sbjct: 207 QAFMIGFLLFIPFLIIDMVVSSTLMSMGMVMLPPSMISLPFKIMMFVMVDGWGLLLGNLV 266
Query: 243 KSF 245
+ F
Sbjct: 267 RGF 269
>gi|253990104|ref|YP_003041460.1| flagellar biosynthesis protein FliP [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253781554|emb|CAQ84717.1| flagellar biosynthetic protein flip precursor [Photorhabdus
asymbiotica]
Length = 251
Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats.
Identities = 97/243 (39%), Positives = 144/243 (59%), Gaps = 4/243 (1%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
R L+ P A+ + + V+T T L P L+M+T F
Sbjct: 11 RLAITLTALILPMDAAAQLPGIISQPLANGGQSWSLPVQTLVFITALGFIPAALLMMTSF 70
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R IIV +LR +G S PPN V++ LALFMTF++MSP D+ + P ++I+
Sbjct: 71 TRIIIVLGLLRNALGTPSAPPNQVLLGLALFMTFFIMSPVFDKVYQDAYLPFSEDKISLE 130
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
TA++ A+P FM TRE DL+LF +A D + R+L+P+F+ SEL+
Sbjct: 131 TALENGAKPLRQFMLRQTRENDLALFARLADQP----PFETADSVPMRVLMPAFITSELK 186
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L
Sbjct: 187 TAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLA 246
Query: 243 KSF 245
+SF
Sbjct: 247 QSF 249
>gi|16125203|ref|NP_419767.1| flagellar biosynthesis protein FliP [Caulobacter crescentus CB15]
gi|221233939|ref|YP_002516375.1| flagellar biosynthesis protein FliP [Caulobacter crescentus NA1000]
gi|2494562|sp|Q45980|FLIP_CAUCR RecName: Full=Flagellar biosynthetic protein fliP
gi|841253|gb|AAA86882.1| FliP [Caulobacter crescentus CB15]
gi|13422227|gb|AAK22935.1| flagellar biosynthesis protein FliP [Caulobacter crescentus CB15]
gi|220963111|gb|ACL94467.1| flagellar biosyntheis protein FliP [Caulobacter crescentus NA1000]
Length = 266
Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats.
Identities = 104/245 (42%), Positives = 161/245 (65%), Gaps = 6/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I + P A+S+++ +N+ ++ +V+ G+ T+LS+AP ++IM T
Sbjct: 22 IISVLAAIACAIMPAAAMAQSAVN--INLGTGAGLTERVVQLVGLMTVLSLAPSIVIMTT 79
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R ++V +LRT +G+ PPN V+ISLALF+T VM+PT +RS + GI+PL++ Q+
Sbjct: 80 SFVRIVVVLGLLRTAIGVQQSPPNPVLISLALFLTAIVMAPTFERSYDAGIKPLLDQQME 139
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A + + P FM + DL+LF+ ++ T R++ P+FMISE
Sbjct: 140 LPEAFEAASGPVKQFMLSQVDRDDLALFVRLSKIPQPRTAAET----PLRVVTPAFMISE 195
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+R+FEIGFL+ +PFL+ID++VA+++M+MGMMMLPP SISLPFK+IFFVL+DGW L+ +
Sbjct: 196 LKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPASISLPFKLIFFVLVDGWRLVAGS 255
Query: 241 LVKSF 245
LV+SF
Sbjct: 256 LVESF 260
>gi|146296296|ref|YP_001180067.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409872|gb|ABP66876.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 251
Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats.
Identities = 97/242 (40%), Positives = 155/242 (64%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ + E+ A +S + + + ++ TIL++AP +LIM+T F
Sbjct: 13 FIILIITFFKNEIAAASASFSLNLGDMNNPRDVSSAIQLIIFLTILTLAPSILIMMTSFT 72
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R +IV +R +G +PPN ++I LALF+TF++M+P +R P + QIT
Sbjct: 73 RILIVLGFVRNALGTQQMPPNQILIGLALFLTFFIMAPVGERIYTQSYLPYIKGQITSQE 132
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A++R P FM NTR+KDL LF+ +++++ T ++ R++IP+F+ISEL+
Sbjct: 133 ALKRAEAPIKEFMLKNTRKKDLDLFIKLSNTN----PTTNVRNLPLRVVIPAFIISELKS 188
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+FE+GF+I +PFLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW L+VE+L+K
Sbjct: 189 AFEMGFIIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWGLVVESLIK 248
Query: 244 SF 245
SF
Sbjct: 249 SF 250
>gi|316932831|ref|YP_004107813.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
DX-1]
gi|315600545|gb|ADU43080.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
DX-1]
Length = 255
Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats.
Identities = 112/245 (45%), Positives = 165/245 (67%), Gaps = 5/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I + L A+ + + ++ ++ + T+LSIAP +LIM+T
Sbjct: 12 IILSVWIVAALAMIAPAQAQD-ISINLGGQGGPGVTERAIQLIALLTVLSIAPSILIMMT 70
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R ++V S+LRT +G + PPN VII+LALF+T +VM PTL ++ + GI+PL+ N+I
Sbjct: 71 SFTRIVVVLSLLRTALGTATAPPNAVIIALALFLTAFVMGPTLQKAYDDGIKPLIANEIG 130
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ R + P VFM+ N REKDL LF+D++ T + + RIL+P+F+ISE
Sbjct: 131 VDDALVRASGPMRVFMQKNVREKDLKLFLDLSGEPPPAT----PEDLSLRILMPAFLISE 186
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+R+FEIGFL+ LPFLIID++VA+I+M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ +
Sbjct: 187 LKRAFEIGFLLFLPFLIIDLVVASILMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGS 246
Query: 241 LVKSF 245
LV+S+
Sbjct: 247 LVQSY 251
>gi|251789178|ref|YP_003003899.1| flagellar biosynthetic protein FliP [Dickeya zeae Ech1591]
gi|247537799|gb|ACT06420.1| flagellar biosynthetic protein FliP [Dickeya zeae Ech1591]
Length = 258
Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 154/245 (62%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++RY ++ L+ A+ + + ++T T LS P +L+M+T
Sbjct: 16 LLRYPAASILLLIAPHALAQLPGIISQPLANGGQSWSLPIQTLVFITALSFIPAVLLMMT 75
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CF R IIV S+LR +G + PPN V++ L+LF+TF+VMSP L+R + +P ++I+
Sbjct: 76 CFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSEDKIS 135
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
AI + ++P FM TRE DL+LF +A + + + R+L+P+++ SE
Sbjct: 136 MEVAIDKGSQPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYVTSE 191
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF I +PFL+ID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +
Sbjct: 192 LKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLLGS 251
Query: 241 LVKSF 245
L +SF
Sbjct: 252 LAQSF 256
>gi|221635440|ref|YP_002523316.1| flagellar biosynthetic protein FliP [Thermomicrobium roseum DSM
5159]
gi|221158046|gb|ACM07164.1| flagellar biosynthetic protein FliP [Thermomicrobium roseum DSM
5159]
Length = 271
Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats.
Identities = 86/241 (35%), Positives = 146/241 (60%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
+ + + + + + + T++S+ P +LI++T F R
Sbjct: 32 AMASSACAFQATMGSTQIQVQSQGGNSTGNPVAAGLELVFLLTLVSLLPTILIVMTSFTR 91
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
+IV S +R+ +G+ +PPN V+I LALF+T +VM+PT +QP + +I + TA
Sbjct: 92 IVIVLSFVRSAIGVPQLPPNQVLIGLALFLTVFVMAPTWQAVNRDALQPYLRGEINQRTA 151
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
++R +P FM TRE+D++LFM + + T + + +L+P+F++SEL+ +
Sbjct: 152 LERGLQPLRTFMFRQTRERDIALFMSLGNLPRPRT----PEDVPTWVLVPAFILSELKTA 207
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F +GF++ +PFL+ID+IV++ +MAMGM+M+PP ISLPFK++ FV++DGW LLV +LV S
Sbjct: 208 FTMGFVLFIPFLVIDLIVSSTLMAMGMIMVPPVVISLPFKLLLFVMVDGWDLLVRSLVVS 267
Query: 245 F 245
F
Sbjct: 268 F 268
>gi|260466613|ref|ZP_05812801.1| flagellar biosynthetic protein FliP [Mesorhizobium opportunistum
WSM2075]
gi|259029619|gb|EEW30907.1| flagellar biosynthetic protein FliP [Mesorhizobium opportunistum
WSM2075]
Length = 243
Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats.
Identities = 131/245 (53%), Positives = 177/245 (72%), Gaps = 3/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M ++ A + + A L AD + +I++ FG+ T+LS+AP LLIMVT
Sbjct: 1 MRKFLLAAALIGATTSIAAAQQLDLGGIGKADGTTVGYIIQMFGLLTVLSVAPGLLIMVT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F RF+I FSILR G+G+ S P NL++ISL+LFMTFYVM+PT D++ G++PLM+NQI+
Sbjct: 61 SFTRFVIAFSILRAGIGLQSTPANLILISLSLFMTFYVMAPTFDQAWNTGVKPLMDNQIS 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+T A ++++PF FM +N R+KD LF D+A D ++ RIL+P+FMISE
Sbjct: 121 QTEAFDKISDPFRTFMLHNVRDKDFDLFADLARERG---QTVSRDTVDLRILVPAFMISE 177
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT +SLPFK++FFVLIDGW+LLV +
Sbjct: 178 IRRGFEIGFLIVLPFLVIDLIVATITMAMGMMMLPPTVVSLPFKILFFVLIDGWNLLVGS 237
Query: 241 LVKSF 245
LV+SF
Sbjct: 238 LVRSF 242
>gi|85716540|ref|ZP_01047510.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
gi|85696541|gb|EAQ34429.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
Length = 251
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 112/242 (46%), Positives = 163/242 (67%), Gaps = 5/242 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ FA+ + + +S ++ + T+LSIAP +LIM+T F
Sbjct: 13 IVVLIAAGSLADPAFAQD-ISINLGGAGTSGVSERAIQLIALLTVLSIAPSILIMMTSFT 71
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R ++V S+LRT +G + PPN VII+LA+F+T +VM PTL +S + GI+PL+ N+IT
Sbjct: 72 RIVVVLSLLRTALGTATAPPNSVIIALAVFLTAFVMGPTLQKSYDDGIKPLVANEITVEE 131
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A+QR + P FM+ N RE+DL LFMD++ T + RIL+P+FMISEL+R
Sbjct: 132 ALQRASVPLRGFMQKNVREQDLKLFMDLSGEPPPKTPA----ELSLRILMPAFMISELKR 187
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGW+L+ +LV+
Sbjct: 188 AFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWALVAGSLVQ 247
Query: 244 SF 245
S+
Sbjct: 248 SY 249
>gi|157371197|ref|YP_001479186.1| flagellar biosynthesis protein FliP [Serratia proteamaculans 568]
gi|157322961|gb|ABV42058.1| flagellar biosynthetic protein FliP [Serratia proteamaculans 568]
Length = 274
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 89/226 (39%), Positives = 143/226 (63%), Gaps = 4/226 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
+ + + V+T + T LS P +L+M+T F R IIV +LR +G
Sbjct: 51 QLPGLISQPLAGGGQSWSLPVQTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNALGTP 110
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P FM
Sbjct: 111 SAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISLDVAMDKGSQPLREFMLRQ 170
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFLIID
Sbjct: 171 TRETDLALYAKLANLP----PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIID 226
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 LVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 272
>gi|75675323|ref|YP_317744.1| flagellar biosynthesis protein FliP [Nitrobacter winogradskyi
Nb-255]
gi|74420193|gb|ABA04392.1| Flagellar transport protein FliP [Nitrobacter winogradskyi Nb-255]
Length = 251
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 163/242 (67%), Gaps = 5/242 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ + A+ + + + ++ ++ + T+LSIAP +LIM+T F
Sbjct: 13 FLILITAGSLTDPALAQD-ISINLGGAGNGGVTERAIQLIALLTVLSIAPSILIMMTSFT 71
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R ++V S+LRT +G + PPN VII+LA+F+T +VM PTL +S + GI+PL+ N+ T
Sbjct: 72 RIVVVLSLLRTALGTATAPPNSVIIALAMFLTAFVMGPTLQKSYDEGIKPLVANETTVEE 131
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A+QR + P FM+ N RE+DL LFMD++ T + RIL+P+FMISEL+R
Sbjct: 132 ALQRASVPLRGFMQKNVREQDLKLFMDLSGEPPPATPA----DLSLRILMPAFMISELKR 187
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGW+L+ +LV+
Sbjct: 188 AFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWALVAGSLVQ 247
Query: 244 SF 245
S+
Sbjct: 248 SY 249
>gi|15887892|ref|NP_353573.1| flagellar biosynthesis protein FliP [Agrobacterium tumefaciens str.
C58]
gi|2494560|sp|Q44344|FLIP_AGRT5 RecName: Full=Flagellar biosynthetic protein fliP
gi|1086567|gb|AAB68974.1| FliP [Agrobacterium tumefaciens]
gi|2459720|gb|AAB71796.1| FliP [Agrobacterium tumefaciens]
gi|15155484|gb|AAK86358.1| flagellar biosynthetic protein [Agrobacterium tumefaciens str. C58]
Length = 245
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 147/246 (59%), Positives = 193/246 (78%), Gaps = 3/246 (1%)
Query: 1 MIRYCF-FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
MIR+ A+ L P L A+ D+ N D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1 MIRFLVTIAVLLALPGLANAQQFPSDLFNTQIDGSVAAWIIRTFGLLTVLSVAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T FPRF+I FSILR+GMG+ S P N++++S+A+FMTFYVMSPT D++ G+QPL+ NQI
Sbjct: 61 TSFPRFVIAFSILRSGMGLASTPSNMILLSMAMFMTFYVMSPTFDKAWTDGVQPLLQNQI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
E A+QR+AEPF FM NTR+KDL LF+D+A R + ++ ++YR+L+P+FM+S
Sbjct: 121 NEQQAVQRIAEPFRTFMNANTRDKDLKLFVDIARE--RGQVVMTDNVVDYRVLVPAFMLS 178
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
E+RR FEIGFLIILPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV
Sbjct: 179 EIRRGFEIGFLIILPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238
Query: 240 NLVKSF 245
+LV+SF
Sbjct: 239 SLVRSF 244
>gi|83647846|ref|YP_436281.1| flagellar biosynthesis protein FliP [Hahella chejuensis KCTC 2396]
gi|83635889|gb|ABC31856.1| flagellar biosynthetic protein FliP [Hahella chejuensis KCTC 2396]
Length = 253
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 100/249 (40%), Positives = 160/249 (64%), Gaps = 7/249 (2%)
Query: 1 MIRYCFFALFLVTPELVF-AKSSLHD---VMNIPADLSISTWIVRTFGIFTILSIAPILL 56
++R + LFL+ P + + A+ ++ ++ P + ++ + T L+ P L
Sbjct: 6 VLRLTYLILFLMLPGVAWSAQDAILPAVKLVTNPDGTQEYSVTLQILALMTALTFIPAFL 65
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
+M+T F R IIVFSILR +G+ P N +++ +ALF+TF++M PT ++ E+ +QP +
Sbjct: 66 MMMTSFTRIIIVFSILRQALGLQQAPSNQILVGIALFLTFFIMGPTFKQANEVALQPYLA 125
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
Q+T A+ + +EPF FM TRE DL LF+ +A ++ + + + IL+P+F
Sbjct: 126 EQLTAQEAVAKASEPFREFMLRQTRESDLGLFIRLAGDENK---YANPEEVPFTILMPAF 182
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
+ SEL+ +F+IGFLI +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L
Sbjct: 183 VTSELKTAFQIGFLIFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWAL 242
Query: 237 LVENLVKSF 245
++ L SF
Sbjct: 243 IMGTLAASF 251
>gi|150019068|ref|YP_001311322.1| flagellar biosynthetic protein FliP [Clostridium beijerinckii NCIMB
8052]
gi|149905533|gb|ABR36366.1| flagellar biosynthetic protein FliP [Clostridium beijerinckii NCIMB
8052]
Length = 259
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 93/246 (37%), Positives = 153/246 (62%), Gaps = 4/246 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ +C + + ++ + + ++ FTILS+ P ++IM+T
Sbjct: 18 IMIFCTISASAAPSSTSVPQLNV-SFGDGNSTPQDYVSSIKILIFFTILSLLPSIVIMMT 76
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R ++VFS L++ MG+ PN ++ LA+F+T ++M P + IQP + N+IT
Sbjct: 77 SFTRIVVVFSFLKSAMGVQQAVPNQILTGLAIFLTLFIMQPVYNEVNTKAIQPYLENKIT 136
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A + ++P FM TREKDL LF+++ N +++ + LIP+F ISE
Sbjct: 137 QDQAFEEASKPLKAFMLKQTREKDLELFVEIGGVDKEN---LTKENVSFTTLIPAFAISE 193
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFLI LPFL+IDM+V++++M+MGM MLPPT +SLPFK+I FV++DGW LLV++
Sbjct: 194 LKTAFQIGFLIYLPFLVIDMVVSSVLMSMGMFMLPPTMVSLPFKLILFVMVDGWYLLVKS 253
Query: 241 LVKSFI 246
L++SF+
Sbjct: 254 LIQSFM 259
>gi|188579873|ref|YP_001923318.1| flagellar biosynthesis protein FliP [Methylobacterium populi BJ001]
gi|179343371|gb|ACB78783.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001]
Length = 253
Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 129/254 (50%), Positives = 170/254 (66%), Gaps = 11/254 (4%)
Query: 1 MIRYCFFALFLV--TPELVFAKS-------SLHDVMNIPADLSISTWIVRTFGIFTILSI 51
MIR A ++ T A+ D + P + + S I++ + T+LS+
Sbjct: 1 MIRRLSLAAIVLGLTATAAVAQGAGGVTGVPGLDALLPPGNGAASGRIIQLVALLTVLSL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
AP LL+M+T F RF + FS LR+G+G+ S P NL ++SLALFMTFYVM+PT DR+ G+
Sbjct: 61 APGLLVMMTSFTRFAVAFSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGV 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
+PL N+I E A ++ EPF FM + R KDL F D+A + + I+ RI
Sbjct: 121 KPLQENRIGEEEAFGKIVEPFREFMTQHVRPKDLQTFTDLASRNFPK--AEAGEKIDLRI 178
Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
LIP+FMISELRR FEIGFLI+LPFL+ID+IV+TIVM+MGMMMLPPT ISLPFKV+FF+LI
Sbjct: 179 LIPAFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLPPTVISLPFKVLFFILI 238
Query: 232 DGWSLLVENLVKSF 245
DGW+LLV LV+SF
Sbjct: 239 DGWNLLVSGLVRSF 252
>gi|317048609|ref|YP_004116257.1| flagellar biosynthetic protein FliP [Pantoea sp. At-9b]
gi|316950226|gb|ADU69701.1| flagellar biosynthetic protein FliP [Pantoea sp. At-9b]
Length = 244
Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 98/245 (40%), Positives = 150/245 (61%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M R L+ + A+ + + V+T T L+ P +L+M+T
Sbjct: 2 MRRLLPLLPLLLLAPVAHAQLPGLVSHPLANGGQSWSLPVQTLVFITSLTFIPAVLLMMT 61
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVF +LR +G S PPN V++ LALF+TF++M+PT D+ P ++I+
Sbjct: 62 SFTRIIIVFGLLRNALGTPSAPPNQVLVGLALFLTFFIMAPTFDKIYSDAYLPFSQDKIS 121
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
AI + A+P FM TRE DL+LF +A++ I + + RIL+P+++ SE
Sbjct: 122 MDVAIDKGAQPLREFMLRQTREADLALFARLANTP----PIEGPEAVPMRILLPAYVTSE 177
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LLV +
Sbjct: 178 LKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLVGS 237
Query: 241 LVKSF 245
L +SF
Sbjct: 238 LAQSF 242
>gi|238025697|ref|YP_002909928.1| flagellar biosynthesis protein FliP [Burkholderia glumae BGR1]
gi|237874891|gb|ACR27224.1| Flagellar biosynthetic protein FliP [Burkholderia glumae BGR1]
Length = 266
Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 94/228 (41%), Positives = 144/228 (63%), Gaps = 4/228 (1%)
Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
A + P + + V+T + T+LS P +++M+T F R IIV S++R +G
Sbjct: 42 AAGLPAFNSSPGPNGGTTYSLSVQTMLLLTMLSFLPAIVLMMTSFTRIIIVLSLMRQALG 101
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
+ PPN V++ LALF+T +VMSP +DR+ G +P + A+QR PF FM
Sbjct: 102 TATTPPNQVLVGLALFLTLFVMSPVIDRAYNDGYKPFSAGTLPMDQAVQRGLAPFKTFML 161
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
TRE DL+LF +A + + + + +L+P+F+ SEL+ F+IGF I +PFLI
Sbjct: 162 KQTREGDLALFAKIAKAP----AMQGPEDVPLPLLVPAFVTSELKTGFQIGFTIFIPFLI 217
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
ID++VA+++M+MGMMM+ PT+ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 218 IDLVVASVLMSMGMMMVSPTTISLPFKLMLFVLVDGWQLLIGSLAQSF 265
>gi|238794007|ref|ZP_04637625.1| Flagellar biosynthetic protein fliP [Yersinia intermedia ATCC
29909]
gi|238726639|gb|EEQ18175.1| Flagellar biosynthetic protein fliP [Yersinia intermedia ATCC
29909]
Length = 273
Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 95/233 (40%), Positives = 144/233 (61%), Gaps = 4/233 (1%)
Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
VFA+ + + V+T T LS P L+M+T F R IIV +L
Sbjct: 43 CSPAVFAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLL 102
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R +G S PPN V++ LALF+TF++MSP D+ + P ++I+ AI + A+P
Sbjct: 103 RNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAIDKGAQPL 162
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF +
Sbjct: 163 REFMLRQTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELKTAFQIGFTVF 218
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 219 IPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 271
>gi|288958044|ref|YP_003448385.1| flagellar biosynthetic protein [Azospirillum sp. B510]
gi|288910352|dbj|BAI71841.1| flagellar biosynthetic protein [Azospirillum sp. B510]
Length = 266
Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 116/244 (47%), Positives = 167/244 (68%), Gaps = 6/244 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I + ++ A+S D+ + A + + IV+T G+ T+LS+AP +LIM+T
Sbjct: 26 IGLALGLISGLSAGPALAQSLTFDLGD--AGGTATGRIVQTIGLITVLSLAPSILIMMTA 83
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R +IV S LR +G+ VPP V++SLALF+TF+VM+P +RS GIQPLMN +I E
Sbjct: 84 FTRIVIVLSFLRNALGVQQVPPTTVMMSLALFLTFFVMAPVFERSYTQGIQPLMNQEIDE 143
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A +R P FM ++T EKDL LFMDMA + + + + + +L+P+FMISE+
Sbjct: 144 MEAFRRTVAPLRDFMLHHTAEKDLRLFMDMARLQN----VQEPNDMPLHVLVPAFMISEI 199
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+R FEIGFL+ LPFLIIDM+V++I+M+MGMMMLPPT +++PFK+IFFVL+DGW L+ +L
Sbjct: 200 KRGFEIGFLLFLPFLIIDMVVSSILMSMGMMMLPPTMVAIPFKIIFFVLVDGWYLIAGSL 259
Query: 242 VKSF 245
+SF
Sbjct: 260 ARSF 263
>gi|182418437|ref|ZP_02949731.1| flagellar biosynthetic protein FliP [Clostridium butyricum 5521]
gi|237666336|ref|ZP_04526321.1| flagellar biosynthetic protein FliP [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182377819|gb|EDT75363.1| flagellar biosynthetic protein FliP [Clostridium butyricum 5521]
gi|237657535|gb|EEP55090.1| flagellar biosynthetic protein FliP [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 259
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 97/235 (41%), Positives = 147/235 (62%), Gaps = 2/235 (0%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
P + +R FT+L++ P ++IMVT F R ++VFS
Sbjct: 27 AAPTTTDIPQVNISFGDGSDSPKDYVTNIRILIFFTVLALLPSIVIMVTSFTRIVVVFSF 86
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
L+T +G+ PN ++ LA+F+TF++M P + GIQP + N+IT+ AI +++P
Sbjct: 87 LKTAIGVTQSVPNQILTGLAIFLTFFIMQPVYSQMNTNGIQPYLENKITQEQAIDEISKP 146
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
FM TR+ DL LF+++ + I + I + L+P+F ISELR +FEIGFLI
Sbjct: 147 LKEFMAKETRQDDLELFIEINNVD--KQSIAEAKDIPFTSLVPAFAISELRTAFEIGFLI 204
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
LPFL+IDM+VA+++M+MGM MLPPT+++LPFK+I FV+++GW LLVE L+KSF+
Sbjct: 205 FLPFLVIDMVVASVLMSMGMFMLPPTTVALPFKLILFVMVNGWHLLVEQLIKSFM 259
>gi|37525861|ref|NP_929205.1| flagellar biosynthesis protein FliP [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36785290|emb|CAE14231.1| flagellar biosynthetic protein FliP [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 244
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 97/243 (39%), Positives = 145/243 (59%), Gaps = 4/243 (1%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
R L+ P A+ + + V+T T L+ P L+M+T F
Sbjct: 4 RLGMILAALILPMDAAAQLPGIISQPLANGGQSWSLPVQTLVFITALTFIPAALLMMTSF 63
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R IIV +LR +G S PPN V++ LALFMTF++MSP D+ + P ++I+
Sbjct: 64 TRIIIVLGLLRNALGTPSAPPNQVLLGLALFMTFFIMSPVFDKVYQDAYLPFSEDKISLE 123
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
TA++ A+P FM TRE DL+LF +A D + R+L+P+F+ SEL+
Sbjct: 124 TALENGAKPLRQFMLRQTRENDLALFARLADQP----PFETADSVPMRVLMPAFITSELK 179
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L
Sbjct: 180 TAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLA 239
Query: 243 KSF 245
+SF
Sbjct: 240 QSF 242
>gi|116250488|ref|YP_766326.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv.
viciae 3841]
gi|241203112|ref|YP_002974208.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|115255136|emb|CAK06210.1| putative flagellar biosynthetic protein FliP [Rhizobium
leguminosarum bv. viciae 3841]
gi|240857002|gb|ACS54669.1| flagellar biosynthetic protein FliP [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 245
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 156/246 (63%), Positives = 199/246 (80%), Gaps = 3/246 (1%)
Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
MIR F A + PEL A+ D++N+P D S++ WI+RTFG+ TILS+AP +LIMV
Sbjct: 1 MIRLIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T FPRFII FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61 TSFPRFIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
ET A+QR+AEPF FM NTR+KDL+LF+D+A R +I D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLARE--RGQNIQTTDPIDYRVLIPAFMIS 178
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238
Query: 240 NLVKSF 245
+LV+SF
Sbjct: 239 SLVRSF 244
>gi|118443404|ref|YP_877989.1| flagellar biosynthesis protein FliP [Clostridium novyi NT]
gi|118133860|gb|ABK60904.1| flagellar biosynthetic protein fliP [Clostridium novyi NT]
Length = 257
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 92/251 (36%), Positives = 157/251 (62%), Gaps = 9/251 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDV------MNIPADLSISTWIVRTFGIFTILSIAPI 54
++ FAL ++ +A + + ++ + ++ + T++S+ P
Sbjct: 8 IVILVMFALAILGATKAYAAPNTIPIPKINVSVDQASSPKDYVDNIKLLIMLTVISLLPS 67
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
L+M+T F R I+V +R +G PPN +++ LALF+T ++M+PT + I+P
Sbjct: 68 FLVMMTSFTRIIVVLGFMRNALGTQQAPPNQILVGLALFLTIFIMTPTYKTINKEAIKPF 127
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ N+IT+T A+ A+P FM TR+KDL LF+D++ + +N +++ ++IP
Sbjct: 128 LENKITQTEALNNAAKPMREFMLKQTRDKDLELFLDVSKTDKKNI---TKENVPMYVVIP 184
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
SF+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW
Sbjct: 185 SFIISELKTAFKIGFLLFVPFLIIDIVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGW 244
Query: 235 SLLVENLVKSF 245
LLV++LV +
Sbjct: 245 YLLVKSLVMGY 255
>gi|300717241|ref|YP_003742044.1| flagellar biosynthesis protein [Erwinia billingiae Eb661]
gi|299063077|emb|CAX60197.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661]
Length = 244
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 95/229 (41%), Positives = 145/229 (63%), Gaps = 4/229 (1%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
V A+ + V+T T L+ P +L+M+T F R IIVF +LR +
Sbjct: 18 VHAQLPGLMSHPTANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 77
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G S PPN V++ LALF+TF++M P D+ + P ++I+ AI + A+P FM
Sbjct: 78 GTPSAPPNQVLLGLALFLTFFIMGPVFDKIYQDAYLPFSQDKISMQDAIDKGAQPLREFM 137
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TRE DL+LF +++S + + + RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 138 LRQTREADLALFARLSNSP----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 193
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGWSLLV +L +SF
Sbjct: 194 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWSLLVSSLAQSF 242
>gi|311279110|ref|YP_003941341.1| flagellar biosynthetic protein FliP [Enterobacter cloacae SCF1]
gi|308748305|gb|ADO48057.1| flagellar biosynthetic protein FliP [Enterobacter cloacae SCF1]
Length = 245
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 100/228 (43%), Positives = 150/228 (65%), Gaps = 4/228 (1%)
Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
FA+ +P + V+T T L+ P +L+M+T F R IIVF +LR+ +G
Sbjct: 20 FAQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRSALG 79
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
S PPN V++ LALF+TF++MSP +D+ QP +N+IT AI + A+P FM
Sbjct: 80 TASAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFNDNKITLEQAIDKGAQPLREFML 139
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
TRE DL+LF ++HS I + + RIL+P+++ SEL+ +F+IGF I +PFLI
Sbjct: 140 RQTREADLALFARLSHSE----PIQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLI 195
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
ID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 196 IDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|331663444|ref|ZP_08364354.1| flagellar biosynthetic protein FliP [Escherichia coli TA143]
gi|331059243|gb|EGI31220.1| flagellar biosynthetic protein FliP [Escherichia coli TA143]
Length = 249
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 97/238 (40%), Positives = 150/238 (63%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|222147577|ref|YP_002548534.1| flagellar biosynthesis protein FliP [Agrobacterium vitis S4]
gi|221734565|gb|ACM35528.1| flagellar biosynthetic protein [Agrobacterium vitis S4]
Length = 245
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 145/245 (59%), Positives = 191/245 (77%), Gaps = 2/245 (0%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+ A + PEL A+ + + P D S++ WI+RTFG+ T+LS+AP +LIMVT
Sbjct: 2 IRTLILIAAMIAAPELAQAQQLPSNFLTAPVDGSVAAWIIRTFGLLTVLSVAPGILIMVT 61
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
FPRF+I FSILR+GMG+ S P N+++ SLALFMTFYVM+P +D++ G++PL++NQIT
Sbjct: 62 SFPRFVIAFSILRSGMGLSSTPSNMILTSLALFMTFYVMTPVMDQAWRDGVRPLLDNQIT 121
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
E A+ R+AEPF FM NNTREKDL LF+D+A+ + T + ++YR+LIP+FM+SE
Sbjct: 122 EAEAVPRIAEPFRGFMSNNTREKDLRLFIDLANERGQTTVVE--GKVDYRVLIPAFMLSE 179
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+RR FEIGFLIILPFL+IDMIV+TI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV +
Sbjct: 180 IRRGFEIGFLIILPFLVIDMIVSTITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVGS 239
Query: 241 LVKSF 245
LV+SF
Sbjct: 240 LVRSF 244
>gi|209547934|ref|YP_002279851.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533690|gb|ACI53625.1| flagellar biosynthetic protein FliP [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 245
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 156/246 (63%), Positives = 198/246 (80%), Gaps = 3/246 (1%)
Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
MIR F A + PEL A+ D++N+P D S++ WI+RTFG+ TILS+AP +LIMV
Sbjct: 1 MIRLIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T FPRFII FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61 TSFPRFIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
ET A+QR+AEPF FM NTR+KDL+LF+D+A R I D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLARE--RGQTIQTTDPIDYRVLIPAFMIS 178
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238
Query: 240 NLVKSF 245
+LV+SF
Sbjct: 239 SLVRSF 244
>gi|171057713|ref|YP_001790062.1| flagellar biosynthesis protein FliP [Leptothrix cholodnii SP-6]
gi|170775158|gb|ACB33297.1| flagellar biosynthetic protein FliP [Leptothrix cholodnii SP-6]
Length = 262
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 97/245 (39%), Positives = 148/245 (60%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M+ + + A ++L ++ + + ++T FT LS P +L+M+T
Sbjct: 20 MLGLTVISAWPAVALAQGAPAALPLMVGQGGSGTTFSVPIQTLLFFTALSFLPAVLLMMT 79
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R +IV +LR +G + PPN VI+ L+LF+TF+VM+PTLDR +P NQI
Sbjct: 80 GFTRIVIVLGLLRQALGTQAAPPNQVIVGLSLFLTFFVMAPTLDRVYADAYKPYAANQIG 139
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
AI R P FM TR+ DL+LF +A K++ R+L+P+F+ SE
Sbjct: 140 FEEAIARGEVPMRQFMLKQTRQSDLALFARLAKL----DPAVKSEQAPLRVLVPAFVTSE 195
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFLI +PFL+IDM+VA+++M++GMMML P ++LPFK++ FVL DGW+LL+ +
Sbjct: 196 LKSAFQIGFLIFIPFLVIDMVVASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGS 255
Query: 241 LVKSF 245
L SF
Sbjct: 256 LAASF 260
>gi|238751771|ref|ZP_04613259.1| Flagellar biosynthetic protein fliP [Yersinia rohdei ATCC 43380]
gi|238710042|gb|EEQ02272.1| Flagellar biosynthetic protein fliP [Yersinia rohdei ATCC 43380]
Length = 243
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 148/245 (60%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M + L+ V+A+ + + V+T T LS P L+M+T
Sbjct: 1 MNKPLLALFALLCSPSVWAQLPGIISQPLANGGQSWSLPVQTLVFITALSFLPAALLMMT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +LR +G S PPN V++ LALF+TF++MSP D+ + P ++I+
Sbjct: 61 SFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKIS 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ + ++P FM TRE DL+L+ +A+ + + + RIL+P+++ SE
Sbjct: 121 MEVAMDKGSQPLREFMLRQTRETDLALYARLANLP----PLEGPEVVPMRILLPAYVTSE 176
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +
Sbjct: 177 LKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGS 236
Query: 241 LVKSF 245
L +SF
Sbjct: 237 LAQSF 241
>gi|302392379|ref|YP_003828199.1| flagellar biosynthetic protein FliP [Acetohalobium arabaticum DSM
5501]
gi|302204456|gb|ADL13134.1| flagellar biosynthetic protein FliP [Acetohalobium arabaticum DSM
5501]
Length = 257
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 93/235 (39%), Positives = 149/235 (63%), Gaps = 4/235 (1%)
Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
+V F ++ + ++ + T+LS+AP +LIM+T F R +V S
Sbjct: 26 IVEAAPTFEIPDVNLSIETGEGSQNLALPLQIMLLLTVLSLAPAILIMLTSFVRIAVVLS 85
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
++R + +PPN VII LA+F+T +VM+P + + +QP ++++I + A ++ +
Sbjct: 86 LIRRALATRRMPPNQVIIGLAIFLTIFVMAPVWGQIYDTAVQPYLDDEINQMQAYEQGIK 145
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM TREKD++LF+D+ + I +LIP+F+ISELR +F+IGF+
Sbjct: 146 PLRKFMFKQTREKDIALFVDLGEIERPQNQM----EIPTYVLIPAFIISELRIAFQIGFI 201
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I LPF++IDMIVA+ +M+MGMMMLPP ISLPFK++ FVL+DGW L++++L+K+F
Sbjct: 202 IYLPFIVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVLVDGWYLVIKSLIKTF 256
>gi|238796941|ref|ZP_04640445.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC
43969]
gi|238719201|gb|EEQ11013.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC
43969]
Length = 245
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 100/245 (40%), Positives = 152/245 (62%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+ + + P ++ +M AD + V+T + T L+ P +L+M+T
Sbjct: 3 LGLLTLLMIGFLLPVHSVWAANSDVMMARSADGENWSLPVQTLVLLTSLTFLPAILLMMT 62
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +LR +G S PPN V++ LALF+TFYVMSP ++ + QPL ++I+
Sbjct: 63 GFTRIIIVLGLLRNALGTPSTPPNQVLLGLALFLTFYVMSPVFNQIYKEAWQPLSEDKIS 122
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
TA++R +P FM TRE DL+L+ MA + D + RIL+P+F+ SE
Sbjct: 123 METALERGVQPLRTFMLEQTRETDLALYTRMAKEEN----FQSQDDVPLRILLPAFVTSE 178
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +
Sbjct: 179 LKTGFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLMGS 238
Query: 241 LVKSF 245
L +SF
Sbjct: 239 LAQSF 243
>gi|218778860|ref|YP_002430178.1| flagellar biosynthetic protein FliP [Desulfatibacillum alkenivorans
AK-01]
gi|218760244|gb|ACL02710.1| Flagellar biosynthetic protein FliP [Desulfatibacillum alkenivorans
AK-01]
Length = 256
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 99/249 (39%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIP----ADLSISTWIVRTFGIFTILSIAPILL 56
M+ A +V PE+ A + + I + +++ + T+L++AP +L
Sbjct: 9 MLMLPALACLVVLPEIAEAATIAVPSVQIGVEEATGPEQVSVLLQIVALLTVLTLAPAIL 68
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
+++T F R +VFS LR +G +PPN V++ LALF+T ++M P +QP +N
Sbjct: 69 MLMTSFTRLAVVFSFLRHALGTQQMPPNQVMVGLALFLTVFIMMPVWKDINTNALQPYLN 128
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
+I + AI++ P FM +TREKDL+LF+ ++ + N + LIP+F
Sbjct: 129 EEIGDQEAIEKAVTPLREFMFRHTREKDLALFVKISGEAKPN----SPKDVTIWTLIPAF 184
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
+ISEL +F IGF+I +PFLIIDM+VA+++++MGMMMLPP ISLPFK++ FVL+DGWSL
Sbjct: 185 VISELTTAFMIGFIIYVPFLIIDMVVASVLLSMGMMMLPPVMISLPFKLMLFVLVDGWSL 244
Query: 237 LVENLVKSF 245
+V +LV+SF
Sbjct: 245 IVGSLVQSF 253
>gi|170755849|ref|YP_001782265.1| flagellar biosynthesis protein FliP [Clostridium botulinum B1 str.
Okra]
gi|169121061|gb|ACA44897.1| flagellar biosynthetic protein FliP [Clostridium botulinum B1 str.
Okra]
Length = 258
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 96/244 (39%), Positives = 151/244 (61%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I + + P+ ++ ++ + + ++ + T+L++ P ++M+T
Sbjct: 18 IVFFYSMKAYAAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTS 77
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VF LR MG PPN V+I LALF+T ++M P IQP M N+I +
Sbjct: 78 FVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQPYMKNKINQ 137
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A++ A+P FM TR+KDL LF+D+A + + T D+ I++P+F+ISEL
Sbjct: 138 EQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKPNFKVTK----DNAPLYIVVPAFIISEL 193
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LLV++L
Sbjct: 194 KTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSL 253
Query: 242 VKSF 245
V SF
Sbjct: 254 VMSF 257
>gi|269139497|ref|YP_003296198.1| flagellar biosynthesis pathway, component FliP [Edwardsiella tarda
EIB202]
gi|267985158|gb|ACY84987.1| flagellar biosynthesis pathway, component FliP [Edwardsiella tarda
EIB202]
gi|304559386|gb|ADM42050.1| Flagellar biosynthesis protein FliP [Edwardsiella tarda FL6-60]
Length = 246
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 98/245 (40%), Positives = 151/245 (61%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++RY + L+ A+ + + V+T T LS P L+++T
Sbjct: 4 ILRYTLLSGLLLCAPAALAQLPGIISQPLAHGGQSWSLPVQTLVFLTSLSFLPAALLLMT 63
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +LR +G S PPN V++ LALF+TF++MSP LD+ + QP +I+
Sbjct: 64 SFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVLDKIYQDAYQPFSEQKIS 123
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
TA+ R A+P FM TRE DL+LF +A ++ + + RIL+P+++ SE
Sbjct: 124 METALDRGAKPLRAFMLRQTRETDLALFSRLAKQP----EMQGPEDVPMRILLPAYVTSE 179
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +
Sbjct: 180 LKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGS 239
Query: 241 LVKSF 245
L +SF
Sbjct: 240 LAQSF 244
>gi|134300235|ref|YP_001113731.1| flagellar biosynthesis protein FliP [Desulfotomaculum reducens
MI-1]
gi|134052935|gb|ABO50906.1| flagellar biosynthetic protein FliP [Desulfotomaculum reducens
MI-1]
Length = 257
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 96/250 (38%), Positives = 150/250 (60%), Gaps = 9/250 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLH-----DVMNIPADLSISTWIVRTFGIFTILSIAPIL 55
+I L + P VFA+ + + + V+ T+LS+ P
Sbjct: 11 IIIVLTALLLFLIPNGVFAEPLIPIPSINLNVETAQEPQQVVDSVKLLIFLTLLSMVPAF 70
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
L+M+T F R I+V S LR+ +G PPN V+I LALF+T ++M+P + IQP +
Sbjct: 71 LMMLTSFTRIIVVLSFLRSALGTQQTPPNQVLIGLALFLTIFIMNPVYQDINKNSIQPYL 130
Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
NQ+T A + A+P FM TREKDL LF+++A + + +L+P+
Sbjct: 131 ANQLTYEQATDQAAKPLRNFMVRQTREKDLGLFLNIAKMDKPK----NANEVPMSVLVPA 186
Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
F+ISEL+ +F+IGF++ +PFL+IDM+VA+ +M+MGM MLPP ++LPFK++ FV++DGW
Sbjct: 187 FVISELKTAFQIGFILFVPFLVIDMVVASTLMSMGMFMLPPVMVALPFKLLLFVMVDGWY 246
Query: 236 LLVENLVKSF 245
L+V++LV+SF
Sbjct: 247 LVVKSLVESF 256
>gi|325291933|ref|YP_004277797.1| flagellar biosynthesis protein FliP [Agrobacterium sp. H13-3]
gi|325059786|gb|ADY63477.1| flagellar biosynthesis protein FliP [Agrobacterium sp. H13-3]
Length = 245
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 146/246 (59%), Positives = 192/246 (78%), Gaps = 3/246 (1%)
Query: 1 MIRYCF-FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
MIR+ A+ + P L A+ D+ N D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1 MIRFLVTIAVLVALPGLANAQQFPTDLFNTQIDGSVAAWIIRTFGLLTVLSVAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T FPRF+I FSILR+GMG+ S P N++++S+A+FMTFYVMSPT D++ G+QPL+ NQI
Sbjct: 61 TSFPRFVIAFSILRSGMGLASTPSNMILLSMAMFMTFYVMSPTFDKAWTDGVQPLLQNQI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
E AI R+AEPF FM NTR+KDL LF+D+A R + ++ ++YR+L+P+FM+S
Sbjct: 121 NEQQAIGRIAEPFRTFMNANTRDKDLKLFVDIARE--RGQVVMTDNVVDYRVLVPAFMLS 178
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
E+RR FEIGFLIILPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV
Sbjct: 179 EIRRGFEIGFLIILPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238
Query: 240 NLVKSF 245
+LV+SF
Sbjct: 239 SLVRSF 244
>gi|188534130|ref|YP_001907927.1| flagellar biosynthesis protein FliP [Erwinia tasmaniensis Et1/99]
gi|188029172|emb|CAO97044.1| Flagellar biosynthesis protein [Erwinia tasmaniensis Et1/99]
Length = 245
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 94/229 (41%), Positives = 147/229 (64%), Gaps = 4/229 (1%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
V+A+ + + V+T T L+ P +L+M+T F R IIVF +LR +
Sbjct: 19 VYAQLPGLISQPMANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 78
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G S PPN V++ L+LF+TF++M P D+ QP ++I+ AI + A+P FM
Sbjct: 79 GTPSAPPNQVLLGLSLFLTFFIMGPVFDKIYTDAYQPFSEDKISMQEAIDKGAQPLREFM 138
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TRE DL+LF +A+++ I + + RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 139 LRQTREADLALFARLANTA----PIAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 194
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 195 IIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|145598592|ref|YP_001162668.1| flagellar biosynthesis protein FliP [Yersinia pestis Pestoides F]
gi|149366232|ref|ZP_01888267.1| flagellar biosynthetic protein FliP [Yersinia pestis CA88-4125]
gi|153950312|ref|YP_001401271.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP
31758]
gi|165925983|ref|ZP_02221815.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938702|ref|ZP_02227257.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010952|ref|ZP_02231850.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166210900|ref|ZP_02236935.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167420038|ref|ZP_02311791.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425832|ref|ZP_02317585.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170024627|ref|YP_001721132.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis
YPIII]
gi|186895134|ref|YP_001872246.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis
PB1/+]
gi|218928941|ref|YP_002346816.1| flagellar biosynthesis protein FliP [Yersinia pestis CO92]
gi|229896265|ref|ZP_04511435.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides A]
gi|229897202|ref|ZP_04512358.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229897929|ref|ZP_04513080.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902840|ref|ZP_04517957.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516]
gi|270486627|ref|ZP_06203701.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27]
gi|294504013|ref|YP_003568075.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
gi|21959354|gb|AAM86043.1|AE013852_5 flagellar biosynthesis protein [Yersinia pestis KIM 10]
gi|45436250|gb|AAS61806.1| flagellar biosynthesis protein [Yersinia pestis biovar Microtus
str. 91001]
gi|51589311|emb|CAH20932.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP
32953]
gi|108776112|gb|ABG18631.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516]
gi|108779105|gb|ABG13163.1| flagellar biosynthetic protein FliP [Yersinia pestis Antiqua]
gi|145210288|gb|ABP39695.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides F]
gi|149292645|gb|EDM42719.1| flagellar biosynthetic protein FliP [Yersinia pestis CA88-4125]
gi|152961807|gb|ABS49268.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP
31758]
gi|165913316|gb|EDR31938.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922187|gb|EDR39364.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990296|gb|EDR42597.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166208080|gb|EDR52560.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166961733|gb|EDR57754.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167055231|gb|EDR65028.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169751161|gb|ACA68679.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis
YPIII]
gi|186698160|gb|ACC88789.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis
PB1/+]
gi|229680287|gb|EEO76386.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516]
gi|229688970|gb|EEO81035.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693539|gb|EEO83588.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701188|gb|EEO89217.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides A]
gi|262361801|gb|ACY58522.1| flagellar biosynthesis protein [Yersinia pestis D106004]
gi|262366063|gb|ACY62620.1| flagellar biosynthesis protein [Yersinia pestis D182038]
gi|270335131|gb|EFA45908.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27]
gi|294354472|gb|ADE64813.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
gi|320015442|gb|ADV99013.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 274
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 95/240 (39%), Positives = 145/240 (60%), Gaps = 4/240 (1%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
L L V A+ + + V+T T LS P L+M+T F R
Sbjct: 37 LGLLTLFCSPSVLAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRI 96
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
IIV +LR MG S PPN V++ LALF+TF++MSP D+ + P ++I+ A+
Sbjct: 97 IIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVAL 156
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+ ++P FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F
Sbjct: 157 DKGSQPLREFMLRQTRESDLALYARLANLP----PLEGPEMVPMRILLPAYVTSELKTAF 212
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 213 QIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 272
>gi|168244830|ref|ZP_02669762.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194448965|ref|YP_002046030.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|238912448|ref|ZP_04656285.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|194407269|gb|ACF67488.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|205336386|gb|EDZ23150.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
Length = 245
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 95/244 (38%), Positives = 148/244 (60%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + A A+ + + V+T T L+ P +L+M+T
Sbjct: 4 LLFLSLAGLWFFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTS 63
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 64 FTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISM 123
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL
Sbjct: 124 QEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSEL 179
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L
Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239
Query: 242 VKSF 245
+SF
Sbjct: 240 AQSF 243
>gi|332524236|ref|ZP_08400462.1| flagellar biosynthesis protein FliP [Rubrivivax benzoatilyticus
JA2]
gi|332107571|gb|EGJ08795.1| flagellar biosynthesis protein FliP [Rubrivivax benzoatilyticus
JA2]
Length = 252
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 96/226 (42%), Positives = 145/226 (64%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
L ++ A + + ++T FT LS P LL+++T F R +IV S+LR +G +
Sbjct: 30 GGLPLLVGQGAGGTSYSVPIQTLLFFTALSFIPALLLLMTGFTRIVIVLSLLRQALGTQA 89
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN VII ++LF+TF+VMSPT DR + +P NQI A++R P FM T
Sbjct: 90 APPNQVIIGMSLFLTFFVMSPTFDRVYDQAYKPFAENQIAFDEALKRGEVPMREFMLKQT 149
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
R+ D+ LF +A K++ + R+L+P+F+ SEL+ +F+IGF+I +PFLIIDM
Sbjct: 150 RQSDVQLFAKLAKLPAE----VKSEDVPLRVLVPAFVTSELKSAFQIGFMIFIPFLIIDM 205
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
IVA+++M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF+
Sbjct: 206 IVASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGSLAASFV 251
>gi|168186132|ref|ZP_02620767.1| flagellar biosynthetic protein FliP [Clostridium botulinum C str.
Eklund]
gi|169295707|gb|EDS77840.1| flagellar biosynthetic protein FliP [Clostridium botulinum C str.
Eklund]
Length = 257
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 89/251 (35%), Positives = 155/251 (61%), Gaps = 9/251 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDV------MNIPADLSISTWIVRTFGIFTILSIAPI 54
++ FAL ++ +A + + ++ ++ + T++S+ P
Sbjct: 8 IVILVMFALVVLGTTKAYAAPNTIPIPKINVSVDQANSPKDYVDNIKLLVMLTVISLLPS 67
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
L+M+T F R I+V +R+ +G PPN +++ +ALF+T ++M+PT + I+P
Sbjct: 68 FLVMMTSFTRIIVVLGFMRSALGTQQAPPNQILVGIALFLTIFIMAPTYKTINKEAIKPF 127
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ N+IT+T A+ ++P FM TR+KDL LF+D++ + +++ ++IP
Sbjct: 128 LENKITQTEALNNASKPMREFMLKQTRDKDLELFLDISKTDKTKI---TKENVPMYVVIP 184
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
SF+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW
Sbjct: 185 SFIISELKTAFKIGFLLFIPFLIIDIVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGW 244
Query: 235 SLLVENLVKSF 245
LLV++LV +
Sbjct: 245 YLLVKSLVMGY 255
>gi|187925750|ref|YP_001897392.1| flagellar biosynthesis protein FliP [Burkholderia phytofirmans
PsJN]
gi|187716944|gb|ACD18168.1| flagellar biosynthetic protein FliP [Burkholderia phytofirmans
PsJN]
Length = 277
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 102/236 (43%), Positives = 151/236 (63%), Gaps = 7/236 (2%)
Query: 14 PELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
P L FA+++ N P + + V+T + T+LS P +L+M+T F R IIV S
Sbjct: 46 PTLSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLS 105
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
+LR +G + PPN V++ LALF+T +VMSP LD++ G +P + I TA+ R
Sbjct: 106 LLRQALGTSTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGTIPMETAVNRGLA 165
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
PF FM TRE DL+LF ++H + + + +L+PSF+ SEL+ F+IGF
Sbjct: 166 PFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFQIGFT 221
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 222 IFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 277
>gi|315657501|ref|ZP_07910383.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315491973|gb|EFU81582.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 422
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 85/232 (36%), Positives = 136/232 (58%), Gaps = 4/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
P +N+ + V F + T+LSIAP LL+M+T F + IV ++ R
Sbjct: 194 PNAPVNPEKPGIQLNVNGWDKAPSTAVLVFLLITVLSIAPSLLLMMTSFTKIFIVLAMAR 253
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
MG+ +PPN VI LA+F++ ++MSPT+ + +QP M+ +I + +P
Sbjct: 254 NAMGLNQIPPNQVISGLAIFLSLFIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVR 313
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM TRE+D++L A + + + L+P+FMISE+R +F IGF++ +
Sbjct: 314 EFMGPLTREEDIALMTRAADRPNPP----SLEETPFTTLVPAFMISEVRSAFIIGFVVFI 369
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFL+ID++V +M+MGMMMLPP +S+PFKV+ FV++DGW LL + L+ ++
Sbjct: 370 PFLVIDLVVGAALMSMGMMMLPPVMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421
>gi|238920321|ref|YP_002933836.1| flagellar biosynthetic protein FliP, [Edwardsiella ictaluri 93-146]
gi|238869890|gb|ACR69601.1| flagellar biosynthetic protein FliP, putative [Edwardsiella
ictaluri 93-146]
Length = 246
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 98/245 (40%), Positives = 151/245 (61%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++RY + L+ A+ + + V+T T LS P L+++T
Sbjct: 4 ILRYTLLSGLLLCAPAALAQLPGIISQPLAHGGQSWSLPVQTLVFLTSLSFLPAALLLMT 63
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +LR +G S PPN V++ LALF+TF++MSP LD+ + QP +I+
Sbjct: 64 SFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVLDKIYQEAYQPFSEQKIS 123
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
TA+ R A+P FM TRE DL+LF +A ++ + + RIL+P+++ SE
Sbjct: 124 METALDRGAKPLRAFMLRQTRETDLALFSRLAKQP----EMQGPEDVPMRILLPAYVTSE 179
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +
Sbjct: 180 LKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGS 239
Query: 241 LVKSF 245
L +SF
Sbjct: 240 LAQSF 244
>gi|77463634|ref|YP_353138.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides 2.4.1]
gi|77388052|gb|ABA79237.1| Flagellar transport protein FliP [Rhodobacter sphaeroides 2.4.1]
Length = 301
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 89/223 (39%), Positives = 137/223 (61%), Gaps = 4/223 (1%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
+ + + ++ + T L++ P L++ ++ F R IIV SILR +G P
Sbjct: 80 PAITVTEGTGGTSYSLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTP 139
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN V+I+LALF+TF+VM PTL E + P ++ QI AI+R F+ NTR+
Sbjct: 140 PNQVLIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQ 199
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
DL +F D+A + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++
Sbjct: 200 NDLLMFSDLAG----AGPYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVI 255
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+I+MA+GMMML P +SLPFK++ FVL+DGW+L V +L ++
Sbjct: 256 ASILMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAATY 298
>gi|254502570|ref|ZP_05114721.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11]
gi|222438641|gb|EEE45320.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11]
Length = 246
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 132/245 (53%), Positives = 171/245 (69%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M + A L A+ + + S S +++ + T+LS+AP +LIMVT
Sbjct: 1 MRLFLTVAALLALTGAAAAQVPDLSALLPEGEGSASGRVIQMIILLTVLSLAPGILIMVT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F RF+I FS LR+G+G+ + P NL++ISLALFMTFYVM+PT DR+ E G++PLMNN+IT
Sbjct: 61 SFIRFVIAFSFLRSGIGLQTTPGNLILISLALFMTFYVMAPTFDRAWEDGVRPLMNNEIT 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
E A ++ EPF FM + REKDL LF D+A + + +E R+LIP+FMISE
Sbjct: 121 EEEAYVKITEPFREFMLSQVREKDLVLFDDLAAGRVTDGSADSAEEVELRVLIPAFMISE 180
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LRR FEIGFLI LPFL+IDMIVATI M+MGMMMLPPT ISLPFK +FF+LIDGW+LLV +
Sbjct: 181 LRRGFEIGFLIALPFLVIDMIVATITMSMGMMMLPPTVISLPFKALFFILIDGWNLLVGS 240
Query: 241 LVKSF 245
LV+SF
Sbjct: 241 LVRSF 245
>gi|91211166|ref|YP_541152.1| flagellar biosynthesis protein FliP [Escherichia coli UTI89]
gi|117624088|ref|YP_853001.1| flagellar biosynthesis protein FliP [Escherichia coli APEC O1]
gi|218558805|ref|YP_002391718.1| flagellar biosynthesis protein FliP [Escherichia coli S88]
gi|91072740|gb|ABE07621.1| flagellar assembly protein FliP [Escherichia coli UTI89]
gi|115513212|gb|ABJ01287.1| flagellar assembly protein FliP [Escherichia coli APEC O1]
gi|218365574|emb|CAR03301.1| flagellar biosynthesis protein [Escherichia coli S88]
gi|294490075|gb|ADE88831.1| flagellar biosynthetic protein FliP [Escherichia coli IHE3034]
gi|307626576|gb|ADN70880.1| flagellar biosynthesis protein FliP [Escherichia coli UM146]
gi|323952441|gb|EGB48314.1| flagellar biosynthetic protein FliP [Escherichia coli H252]
Length = 245
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 96/238 (40%), Positives = 149/238 (62%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFNEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GEQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|238755315|ref|ZP_04616658.1| Flagellar biosynthetic protein fliP [Yersinia ruckeri ATCC 29473]
gi|238706451|gb|EEP98825.1| Flagellar biosynthetic protein fliP [Yersinia ruckeri ATCC 29473]
Length = 262
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 93/232 (40%), Positives = 143/232 (61%), Gaps = 4/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
V A+ + + V+T + T LS P L+M+T F R IIV +LR
Sbjct: 33 SPAVCAQLPGIISQPLANGGQSWSLPVQTLVLITSLSFLPAALLMMTSFTRIIIVLGLLR 92
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+G S PPN V++ LALF+TF++MSP D+ + P ++I+ AI + A+P
Sbjct: 93 NALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMDIAIDKGAQPLR 152
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM TRE DL+L+ +A+ + + RIL+P+++ SEL+ +F+IGF + +
Sbjct: 153 EFMLRQTRETDLALYARLANMP----AFEGPEAVPMRILLPAYVTSELKTAFQIGFTVFI 208
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 209 PFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 260
>gi|83309709|ref|YP_419973.1| flagellar biosynthesis protein FliP [Magnetospirillum magneticum
AMB-1]
gi|82944550|dbj|BAE49414.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum AMB-1]
Length = 250
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 109/245 (44%), Positives = 163/245 (66%), Gaps = 6/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ L + V A+S D+ S ++ I++ + T+LS+AP +L+MVT
Sbjct: 11 ILAAAVGILTALAAGPVLAQSLNIDLGGP--QASATSRIIQLIALTTVLSVAPSILVMVT 68
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F RF++V LR +G PPN V++SLA+F+T +VM+PT +++ GI P+M+ +
Sbjct: 69 SFTRFVVVLGFLRQALGTQQSPPNTVMVSLAMFLTAFVMAPTFEKAWTDGIAPVMDGHLD 128
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
E +R +PF FM + R +DL LFMD++ R ++ K + R LIP+FMISE
Sbjct: 129 EIEGFERAVKPFHAFMSKHVRGQDLKLFMDLS----RAKEVEKAEDAPLRALIPAFMISE 184
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LRR+FEIGFLI LPFLIIDM++A+++M+MGMMM+PP ISLPFK+IFFV++DGW L+V +
Sbjct: 185 LRRAFEIGFLIFLPFLIIDMVIASVLMSMGMMMIPPAMISLPFKLIFFVMVDGWYLVVGS 244
Query: 241 LVKSF 245
LV+S+
Sbjct: 245 LVQSY 249
>gi|254559215|ref|YP_003066310.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
DM4]
gi|254266493|emb|CAX22257.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
DM4]
Length = 260
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 122/224 (54%), Positives = 161/224 (71%), Gaps = 2/224 (0%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
D + P + + S I++ + T+LS+AP LL+MVT F RF + S LR+G+G+ S
Sbjct: 38 PGLDALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQST 97
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P NL ++SLALFMTFYVM+PT DR+ G++PL N+I+E A ++ +PF FM + R
Sbjct: 98 PANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVR 157
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F D+A + + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+I
Sbjct: 158 PKDLQTFTDLASRTFPK--AEAGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDII 215
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
V+TIVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV LV+SF
Sbjct: 216 VSTIVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259
>gi|16760923|ref|NP_456540.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141385|ref|NP_804727.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|62180554|ref|YP_216971.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161502899|ref|YP_001570011.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|167552788|ref|ZP_02346539.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|168234152|ref|ZP_02659210.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168239219|ref|ZP_02664277.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168462479|ref|ZP_02696410.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168823022|ref|ZP_02835022.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194444637|ref|YP_002041244.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194468817|ref|ZP_03074801.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194737682|ref|YP_002115013.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197247593|ref|YP_002146044.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197264056|ref|ZP_03164130.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|198244709|ref|YP_002215107.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200391063|ref|ZP_03217674.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204931035|ref|ZP_03221861.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|207856508|ref|YP_002243159.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213023112|ref|ZP_03337559.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213163376|ref|ZP_03349086.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213417182|ref|ZP_03350326.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213424995|ref|ZP_03357745.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213584779|ref|ZP_03366605.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213650743|ref|ZP_03380796.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213855268|ref|ZP_03383508.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|224583522|ref|YP_002637320.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|25316655|pir||AD0753 flagellar biosynthetic protein FliP [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503220|emb|CAD05727.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137012|gb|AAO68576.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|62128187|gb|AAX65890.1| flagellar biosynthesis [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|160864246|gb|ABX20869.1| hypothetical protein SARI_00958 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|194403300|gb|ACF63522.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194455181|gb|EDX44020.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194713184|gb|ACF92405.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195634044|gb|EDX52396.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197211296|gb|ACH48693.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197242311|gb|EDY24931.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197288073|gb|EDY27460.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939225|gb|ACH76558.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199603508|gb|EDZ02054.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204320079|gb|EDZ05284.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205322623|gb|EDZ10462.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205331887|gb|EDZ18651.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205340666|gb|EDZ27430.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|206708311|emb|CAR32614.1| flagellar biosynthetic protein flip precursor [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|224468049|gb|ACN45879.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320085402|emb|CBY95183.1| Flagellar biosynthetic protein fliP Flagellar biosynthetic protein
mopC [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|322715030|gb|EFZ06601.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|326622855|gb|EGE29200.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 245
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 95/244 (38%), Positives = 149/244 (61%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + A + A+ + + V+T T L+ P +L+M+T
Sbjct: 4 LLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTS 63
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 64 FTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISM 123
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL
Sbjct: 124 QEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSEL 179
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L
Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239
Query: 242 VKSF 245
+SF
Sbjct: 240 AQSF 243
>gi|304390236|ref|ZP_07372190.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326718|gb|EFL93962.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 422
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 85/232 (36%), Positives = 136/232 (58%), Gaps = 4/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
P +N+ + V F + T+LSIAP LL+M+T F + IV ++ R
Sbjct: 194 PNAPVNPEKPGIQLNVNGWDKAPSTAVLVFLLITVLSIAPSLLLMMTSFTKIFIVLAMAR 253
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
MG+ +PPN VI LA+F++ ++MSPT+ + +QP M+ +I + +P
Sbjct: 254 NAMGLNQLPPNQVISGLAIFLSLFIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVR 313
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM TRE+D++L A + + + L+P+FMISE+R +F IGF++ +
Sbjct: 314 EFMGPLTREEDIALMTRAADRPNPP----SLEETPFTTLVPAFMISEVRSAFIIGFVVFI 369
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFL+ID++V +M+MGMMMLPP +S+PFKV+ FV++DGW LL + L+ ++
Sbjct: 370 PFLVIDLVVGAALMSMGMMMLPPVMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421
>gi|315654594|ref|ZP_07907500.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii ATCC
51333]
gi|315491058|gb|EFU80677.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii ATCC
51333]
Length = 422
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 85/232 (36%), Positives = 136/232 (58%), Gaps = 4/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
P +N+ + V F + T+LSIAP LL+M+T F + IV ++ R
Sbjct: 194 PNAPVNPEKPGIQLNVNGWDKAPSTAVLVFLLITVLSIAPSLLLMMTSFTKIFIVLAMAR 253
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
MG+ +PPN VI LA+F++ ++MSPT+ + +QP M+ +I + +P
Sbjct: 254 NAMGLNQIPPNQVISGLAIFLSLFIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVR 313
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM TRE+D++L A + + + L+P+FMISE+R +F IGF++ +
Sbjct: 314 EFMGPLTREEDIALMTRAADRPNPP----SLEETPFTTLVPAFMISEVRSAFIIGFVVFI 369
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFL+ID++V +M+MGMMMLPP +S+PFKV+ FV++DGW LL + L+ ++
Sbjct: 370 PFLVIDLVVGAALMSMGMMMLPPVMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421
>gi|322616972|gb|EFY13880.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618211|gb|EFY15103.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625882|gb|EFY22701.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626334|gb|EFY23144.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632749|gb|EFY29494.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322639091|gb|EFY35784.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640407|gb|EFY37063.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647232|gb|EFY43731.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649920|gb|EFY46341.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655528|gb|EFY51836.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660306|gb|EFY56544.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322662987|gb|EFY59194.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668172|gb|EFY64331.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674069|gb|EFY70163.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675579|gb|EFY71653.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322683010|gb|EFY79026.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686704|gb|EFY82682.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323195408|gb|EFZ80588.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198064|gb|EFZ83181.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204464|gb|EFZ89470.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207554|gb|EFZ92502.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211007|gb|EFZ95867.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217539|gb|EGA02258.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220728|gb|EGA05172.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226685|gb|EGA10882.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231561|gb|EGA15674.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236004|gb|EGA20083.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240574|gb|EGA24617.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323245466|gb|EGA29466.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247584|gb|EGA31535.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323253953|gb|EGA37777.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255519|gb|EGA39280.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262117|gb|EGA45680.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323266240|gb|EGA49730.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323270651|gb|EGA54092.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 245
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 95/244 (38%), Positives = 149/244 (61%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + A + A+ + + V+T T L+ P +L+M+T
Sbjct: 4 LLFLSLAGLWLFSPTAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTS 63
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 64 FTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISM 123
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL
Sbjct: 124 QEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSEL 179
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L
Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239
Query: 242 VKSF 245
+SF
Sbjct: 240 AQSF 243
>gi|330814980|ref|YP_004358685.1| Flagellar biosynthetic protein FliP [Burkholderia gladioli BSR3]
gi|327367373|gb|AEA58729.1| Flagellar biosynthetic protein FliP [Burkholderia gladioli BSR3]
Length = 279
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 96/228 (42%), Positives = 145/228 (63%), Gaps = 5/228 (2%)
Query: 19 AKSSLHDVMNI-PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
A+ + P + + V+T + T+LS P +++M+T F R IIV S+LR +G
Sbjct: 55 AQGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAIVLMMTSFTRIIIVLSLLRQALG 114
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
+ PPN V++ LALF+T +VMSP LDR+ G QP + A+QR PF FM
Sbjct: 115 TTTTPPNQVLVGLALFLTLFVMSPVLDRAYTDGYQPFSAGTLPMDQAVQRGLAPFKTFML 174
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
TRE DL+LF ++ + + + + +L+P+F+ SEL+ F+IGF I +PFLI
Sbjct: 175 KQTRESDLALFARISKAP----PMQGPEDVPLPLLVPAFLTSELKTGFQIGFTIFIPFLI 230
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
ID++VA+++M+MGMMM+ PT+ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 231 IDLVVASVLMSMGMMMVSPTTISLPFKLMLFVLVDGWQLLIGSLAQSF 278
>gi|291613058|ref|YP_003523215.1| flagellar biosynthetic protein FliP [Sideroxydans lithotrophicus
ES-1]
gi|291583170|gb|ADE10828.1| flagellar biosynthetic protein FliP [Sideroxydans lithotrophicus
ES-1]
Length = 248
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 96/246 (39%), Positives = 151/246 (61%), Gaps = 7/246 (2%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIMV 59
+ FAL FA S +N P T ++T + + L+ P +L+M+
Sbjct: 5 KLIAFALLFAMSTSAFAAESGLLALNSTPTPGGGQTYTLSLQTLILISSLTFLPAILLMM 64
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIV +LR+ +G S PPN V++ LALF+TF+VM+P D+ P N+I
Sbjct: 65 TGFTRIIIVLGLLRSAIGTPSSPPNQVLVGLALFLTFFVMAPVFDKIYSDAYLPYSENKI 124
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
+ A ++ + P FM TRE DL+LF+ +++S + + + +IL+P+++ S
Sbjct: 125 SLQQAYEKGSAPLKAFMLRQTRETDLALFVRISNSE----PLQSAEDVPMKILVPAYVTS 180
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +F+IGF++ +PFLIIDM+VA+++M+MGMMM+ P SLPFK++ FVL DGW+LL+
Sbjct: 181 ELKTAFQIGFVVFIPFLIIDMVVASVLMSMGMMMVSPAVFSLPFKIMLFVLADGWNLLIG 240
Query: 240 NLVKSF 245
+LV+SF
Sbjct: 241 SLVQSF 246
>gi|157145258|ref|YP_001452577.1| flagellar biosynthesis protein FliP [Citrobacter koseri ATCC
BAA-895]
gi|78100273|gb|ABB20928.1| flagellar biosynthesis/transport protein [Citrobacter koseri]
gi|157082463|gb|ABV12141.1| hypothetical protein CKO_00995 [Citrobacter koseri ATCC BAA-895]
Length = 245
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 99/245 (40%), Positives = 155/245 (63%), Gaps = 5/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ AL+ ++P FA+ +P + V+T T L+ P +L+M+T
Sbjct: 4 LLSLTLMALWFISPA-AFAQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLMMT 62
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 63 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAWQPFSEEKIS 122
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+++ A+P FM TRE DL LF +A+S + + + RIL+P+++ SE
Sbjct: 123 MQEALEKGAQPLREFMLRQTREADLGLFARLANSG----PLQGPEAVPMRILLPAYVTSE 178
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +
Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238
Query: 241 LVKSF 245
L +SF
Sbjct: 239 LAQSF 243
>gi|56413108|ref|YP_150183.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197362034|ref|YP_002141671.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56127365|gb|AAV76871.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197093511|emb|CAR58972.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 245
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 95/244 (38%), Positives = 149/244 (61%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + A + A+ + + V+T T L+ P +L+M+T
Sbjct: 4 LLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTS 63
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 64 FTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISM 123
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL
Sbjct: 124 QEALDKGAQPLCAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSEL 179
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L
Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239
Query: 242 VKSF 245
+SF
Sbjct: 240 AQSF 243
>gi|296133033|ref|YP_003640280.1| flagellar biosynthetic protein FliP [Thermincola sp. JR]
gi|296031611|gb|ADG82379.1| flagellar biosynthetic protein FliP [Thermincola potens JR]
Length = 262
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 93/244 (38%), Positives = 155/244 (63%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + + V ++ +N ++ + ++ + TILS+AP +LIM T
Sbjct: 22 LSFFSAPVVKVFAAPAVPVPNVDININTSSNPQEVSKSLQILFLITILSLAPAILIMTTA 81
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R ++V S +R+ + + PPN VII LALF+TF++M+PT + + +QP ++ ++++
Sbjct: 82 FTRVVVVLSFVRSALSTHTTPPNQVIIGLALFLTFFIMAPTWSQVNKDALQPYLSGKLSQ 141
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+++ P FM TREKDL+LF+ MA+ T + +LIP+F ISEL
Sbjct: 142 EQALKKAVTPVRDFMFKQTREKDLALFVKMANIKRPRTHA----DVPTYVLIPAFTISEL 197
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF+I +PF++IDM++A+ +M+MGM+MLPP ISLPFK++ FVL+DGW+L+V +L
Sbjct: 198 KTAFQIGFMIYIPFIVIDMVIASSLMSMGMIMLPPMMISLPFKLLLFVLVDGWNLIVRSL 257
Query: 242 VKSF 245
+ SF
Sbjct: 258 IMSF 261
>gi|170741215|ref|YP_001769870.1| flagellar biosynthesis protein FliP [Methylobacterium sp. 4-46]
gi|168195489|gb|ACA17436.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46]
Length = 262
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 123/224 (54%), Positives = 165/224 (73%), Gaps = 2/224 (0%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
D + P + + S I++ + T+LS+AP LL+MVT F RF++ S LR+G+G+ S
Sbjct: 40 PSLDALLPPGNGAASGRIIQMVALLTVLSVAPGLLVMVTSFTRFVVALSFLRSGLGLQST 99
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P NL ++SL+LFMTFYVM+PT DR+ + G++PL N+I+E A +V +PF FM+++ R
Sbjct: 100 PANLFMVSLSLFMTFYVMAPTFDRAWQEGVRPLTENRISEEDAFGKVVDPFREFMQSHVR 159
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
EKDL F D+A + + ++ RILIP+FMISELRR FEIGFLI LPFL+IDMI
Sbjct: 160 EKDLQTFADLASRNFPK--AEAGEKVDLRILIPAFMISELRRGFEIGFLIALPFLVIDMI 217
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VAT+VM+MGMMMLPPT ISLPFKV+FFVLIDGW+LLV LV+S+
Sbjct: 218 VATVVMSMGMMMLPPTVISLPFKVLFFVLIDGWNLLVSGLVRSY 261
>gi|304398865|ref|ZP_07380735.1| flagellar biosynthetic protein FliP [Pantoea sp. aB]
gi|308187300|ref|YP_003931431.1| Flagellar biosynthetic protein fliP [Pantoea vagans C9-1]
gi|304353569|gb|EFM17946.1| flagellar biosynthetic protein FliP [Pantoea sp. aB]
gi|308057810|gb|ADO09982.1| Flagellar biosynthetic protein fliP [Pantoea vagans C9-1]
Length = 244
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 98/245 (40%), Positives = 154/245 (62%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M R L+ + A+ ++P + V+T T L+ P +L+M+T
Sbjct: 2 MRRLLPLLPLLLLAPVAHAQLPGLVSHSLPNGGQSWSLPVQTLVFITALTFIPAVLLMMT 61
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVF +LR +G S PPN V++ L+LF+TF++M+PT D+ + P ++I+
Sbjct: 62 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMAPTFDKIYQDAYLPFSQDKIS 121
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
AI + A+P FM TRE DL+LF +A+++ I + + RIL+P+++ SE
Sbjct: 122 MDVAIDKGAQPLREFMLRQTREADLALFARLANTA----PIAGPEAVPMRILLPAYVTSE 177
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SI+LPFK++ FVL+DGW LLV +
Sbjct: 178 LKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFKLMLFVLVDGWQLLVGS 237
Query: 241 LVKSF 245
L +SF
Sbjct: 238 LAQSF 242
>gi|259908768|ref|YP_002649124.1| flagellar biosynthesis protein FliP [Erwinia pyrifoliae Ep1/96]
gi|224964390|emb|CAX55899.1| Flagellar biosynthesis protein [Erwinia pyrifoliae Ep1/96]
gi|283478744|emb|CAY74660.1| Flagellar biosynthetic protein FliP precursor [Erwinia pyrifoliae
DSM 12163]
gi|310767334|gb|ADP12284.1| flagellar biosynthesis protein FliP [Erwinia sp. Ejp617]
Length = 245
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 94/229 (41%), Positives = 145/229 (63%), Gaps = 4/229 (1%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
V+A+ + V+T T L+ P +L+M+T F R IIVF +LR +
Sbjct: 19 VYAQLPGLVSQPTANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 78
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G S PPN V++ L+LF+TF++M P D+ QP ++I+ AI + A+P FM
Sbjct: 79 GTPSAPPNQVLLGLSLFLTFFIMGPVFDKMYTDAYQPFSEDKISMQEAIDKGAQPLREFM 138
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TRE DL+LF +A++ I + + RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 139 LRQTREADLALFARLANTP----PIAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 194
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 195 IIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVSSLAQSF 243
>gi|209964214|ref|YP_002297129.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW]
gi|209957680|gb|ACI98316.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW]
Length = 255
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 110/217 (50%), Positives = 157/217 (72%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ + I++ + T+LS+AP +LIM+TCF R +IV S LR+ MG VPPN V++
Sbjct: 40 GEQSGTATGRIIQLVALLTVLSLAPSILIMMTCFVRIVIVLSFLRSAMGTQQVPPNQVLV 99
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
SLALF+TF++M+P + S GI+PL+N I E TA R EPF FM + RE+DL LF
Sbjct: 100 SLALFLTFFIMAPVMQESYANGIRPLINEDIDELTAFNRAVEPFHGFMMKHVRERDLQLF 159
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+D+A + + + +++IP+FM+SEL+R+FEIGFL+ +PFL+IDM+VA+++M+
Sbjct: 160 LDIAKTG----PVADPKDVPLQVVIPAFMLSELKRAFEIGFLVFVPFLVIDMVVASVLMS 215
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPPT I+LPFKVIFFVL+DGW L+V +LV+SF
Sbjct: 216 MGMMMLPPTLIALPFKVIFFVLVDGWYLIVGSLVQSF 252
>gi|91785622|ref|YP_560828.1| flagellar biosynthesis protein FliP [Burkholderia xenovorans LB400]
gi|91689576|gb|ABE32776.1| Flagellar transport protein FliP [Burkholderia xenovorans LB400]
Length = 279
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 104/242 (42%), Positives = 154/242 (63%), Gaps = 7/242 (2%)
Query: 8 ALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
AL L P L FA+++ N P + + V+T + T+LS P +++M+T F R
Sbjct: 42 ALMLALPTLSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTR 101
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G + PPN V++ LALF+T +VMSP LD++ G +P + I TA
Sbjct: 102 IIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGTIPMETA 161
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+ R PF FM TRE DL+LF ++H + + + +L+PSF+ SEL+
Sbjct: 162 VNRGLAPFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTG 217
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +S
Sbjct: 218 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQS 277
Query: 245 FI 246
F+
Sbjct: 278 FV 279
>gi|240137203|ref|YP_002961672.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
AM1]
gi|240007169|gb|ACS38395.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
AM1]
Length = 260
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 123/224 (54%), Positives = 162/224 (72%), Gaps = 2/224 (0%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
D + P + + S I++ + T+LS+AP LL+MVT F RF + FS LR+G+G+ S
Sbjct: 38 PGLDALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQST 97
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P NL ++SLALFMTFYVM+PT DR+ G++PL N+I+E A ++ +PF FM + R
Sbjct: 98 PANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVR 157
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F D+A + + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+I
Sbjct: 158 PKDLQTFTDLASRTFPK--AEAGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDII 215
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
V+TIVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV LV+SF
Sbjct: 216 VSTIVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259
>gi|298346006|ref|YP_003718693.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii ATCC
43063]
gi|298236067|gb|ADI67199.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii ATCC
43063]
Length = 422
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 85/232 (36%), Positives = 136/232 (58%), Gaps = 4/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
P +N+ + V F + T+LSIAP LL+M+T F + IV ++ R
Sbjct: 194 PNAPVNPEKPGIQLNVNGWDKAPSTAVLVFLLITVLSIAPSLLLMMTSFTKIFIVLAMAR 253
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
MG+ +PPN VI LA+F++ ++MSPT+ + +QP M+ +I + +P
Sbjct: 254 NAMGLNQIPPNQVISGLAIFLSLFIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVR 313
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM TRE+D++L A + + + L+P+FMISE+R +F IGF++ +
Sbjct: 314 EFMGPLTREEDIALMTRAADRPNPP----SLEETPFTTLVPAFMISEVRSAFIIGFVVFI 369
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFL+ID++V +M+MGMMMLPP +S+PFKV+ FV++DGW LL + L+ ++
Sbjct: 370 PFLVIDLVVGAALMSMGMMMLPPVMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421
>gi|170759449|ref|YP_001787969.1| flagellar biosynthesis protein FliP [Clostridium botulinum A3 str.
Loch Maree]
gi|169406438|gb|ACA54849.1| flagellar biosynthetic protein FliP [Clostridium botulinum A3 str.
Loch Maree]
Length = 258
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 97/244 (39%), Positives = 152/244 (62%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I + + P+ ++ ++ + + ++ + T+L++ P ++M+T
Sbjct: 18 IVFFYSMKAYAAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTS 77
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VF LR MG PPN V+I LALF+T ++M P IQP M N+IT+
Sbjct: 78 FVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQPYMKNKITQ 137
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A++ A+P FM TR+KDL LF+D+A + + T D+ I++P+F+ISEL
Sbjct: 138 EQAVETGAKPLRQFMLKQTRQKDLKLFVDLAKPNFKVTK----DNAPLYIVVPAFIISEL 193
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LLV++L
Sbjct: 194 KTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSL 253
Query: 242 VKSF 245
V SF
Sbjct: 254 VMSF 257
>gi|222053616|ref|YP_002535978.1| flagellar biosynthetic protein FliP [Geobacter sp. FRC-32]
gi|221562905|gb|ACM18877.1| flagellar biosynthetic protein FliP [Geobacter sp. FRC-32]
Length = 251
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 97/249 (38%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPAD----LSISTWIVRTFGIFTILSIAPILL 56
+++ FL+T FA+ +++ +++ F + T+LS+AP LL
Sbjct: 6 ILKPLLVIAFLLTAASAFAEPVALPTVSVGMGKVSKPGDVAVVLQIFFLMTVLSLAPGLL 65
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
+M T F R ++V S LR +G P N +II L+LF+TF++M+P + +QP
Sbjct: 66 MMTTSFTRIVVVLSFLRNALGTQQAPSNQIIIGLSLFLTFFIMAPVWQQINVQALQPYRA 125
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
IT+ A++R P FM + REKDL+LF++++ D I +IP++
Sbjct: 126 QTITQDEALKRAVAPVRKFMLSQVREKDLALFINLSKLPRPK----NADDIPTMTIIPAY 181
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
MISEL+ +F+IGFL+ +PFL++DM+VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L
Sbjct: 182 MISELKTAFQIGFLVYIPFLVLDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGL 241
Query: 237 LVENLVKSF 245
++ +LVKSF
Sbjct: 242 IIGSLVKSF 250
>gi|161613452|ref|YP_001587417.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|168259734|ref|ZP_02681707.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|161362816|gb|ABX66584.1| hypothetical protein SPAB_01169 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|205351247|gb|EDZ37878.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
Length = 245
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 95/244 (38%), Positives = 150/244 (61%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + A + + A+ + + V+T T L+ P +L+M+T
Sbjct: 4 LLFLSLAGLWLFSPVAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTS 63
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 64 FTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISM 123
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL
Sbjct: 124 QEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSEL 179
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L
Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239
Query: 242 VKSF 245
+SF
Sbjct: 240 AQSF 243
>gi|323341374|ref|ZP_08081618.1| flagellar biosynthetic protein FliP [Lactobacillus ruminis ATCC
25644]
gi|323091251|gb|EFZ33879.1| flagellar biosynthetic protein FliP [Lactobacillus ruminis ATCC
25644]
Length = 268
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 102/254 (40%), Positives = 149/254 (58%), Gaps = 9/254 (3%)
Query: 1 MIRYCFFALFLVT---PELVFAKSSLHDV-----MNIPADLSISTWIVRTFGIFTILSIA 52
++ + A FL+ P+ V A S+ + D S+ IV TF I T+LSI
Sbjct: 14 LVLFGMMACFLIAVRLPDHVAAVSTSDVTNTVNKLINGNDQGSSSKIVDTFVIMTLLSII 73
Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
P++LIM T F R I+V S +R+ +G PPN V+I LALF+T + M P + IQ
Sbjct: 74 PLILIMTTSFTRIIVVLSFVRSSLGTQQNPPNQVLIGLALFLTLFTMRPVYNDIYHNAIQ 133
Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS-SHRNTDITKNDHIEYRI 171
P N+IT+ R FM +KD+ LF D+ + I + +
Sbjct: 134 PYNENKITQQEVFDRSENRMKEFMYKQANKKDVKLFKDLDQKNERKKIKYRTYKDIPFTV 193
Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
+ P+F++SEL+ +F IGFL+ +PF+IID++VA+I+M+MGM+ML P ISLPFK++ FVL+
Sbjct: 194 MAPAFILSELKTAFSIGFLLFIPFMIIDLVVASILMSMGMIMLSPIMISLPFKILLFVLV 253
Query: 232 DGWSLLVENLVKSF 245
DGW LLVE+LV+SF
Sbjct: 254 DGWYLLVESLVQSF 267
>gi|283785718|ref|YP_003365583.1| flagellar biosynthetic protein FliP [Citrobacter rodentium ICC168]
gi|282949172|emb|CBG88780.1| flagellar biosynthetic protein FliP [Citrobacter rodentium ICC168]
Length = 245
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 98/245 (40%), Positives = 154/245 (62%), Gaps = 5/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ L+L +P + A+ +P + V+T T L+ P +L+M+T
Sbjct: 4 LLSLTLSGLWLFSP-VALAQLPGLVAQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMT 62
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 63 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVEAYQPFSEEKIS 122
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SE
Sbjct: 123 MQEALDKGAQPLREFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSE 178
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +
Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238
Query: 241 LVKSF 245
L +SF
Sbjct: 239 LAQSF 243
>gi|218528672|ref|YP_002419488.1| flagellar biosynthesis protein FliP [Methylobacterium
chloromethanicum CM4]
gi|218520975|gb|ACK81560.1| flagellar biosynthetic protein FliP [Methylobacterium
chloromethanicum CM4]
Length = 260
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 123/224 (54%), Positives = 162/224 (72%), Gaps = 2/224 (0%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
D + P + + S I++ + T+LS+AP LL+MVT F RF + FS LR+G+G+ S
Sbjct: 38 PGLDALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQST 97
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P NL ++SLALFMTFYVM+PT DR+ G++PL N+I+E A ++ +PF FM + R
Sbjct: 98 PANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVR 157
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F D+A + + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+I
Sbjct: 158 PKDLQTFTDLASRTFPK--AEAGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDII 215
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
V+TIVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV LV+SF
Sbjct: 216 VSTIVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259
>gi|114765260|ref|ZP_01444392.1| flagellar biosynthesis protein P [Pelagibaca bermudensis HTCC2601]
gi|114542395|gb|EAU45423.1| flagellar biosynthesis protein P [Roseovarius sp. HTCC2601]
Length = 282
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 120/251 (47%), Positives = 167/251 (66%), Gaps = 19/251 (7%)
Query: 15 ELVFAKSSLHDVMNIPADL------------SISTWIVRTFGIFTILSIAPILLIMVTCF 62
A+S+ D++ D ++S I++ T+LS+AP LL+++T F
Sbjct: 26 TEAHAQSAGSDLLGAIGDALSSAPAGSDERATLSGRIIQLIAAMTVLSLAPGLLVIMTSF 85
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
RF+IVFS+LR+ +G+ PPN+V+ S+ALFMTF+VM P + + E G+QPLM N ITE
Sbjct: 86 TRFVIVFSMLRSALGLNQSPPNMVLTSMALFMTFFVMQPVFEDAWEGGVQPLMANSITEE 145
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS-------SHRNTDITKNDHIEYRILIPS 175
A+ RV EPF +FM NTREKDL+LF D+A + + +R L+P+
Sbjct: 146 QALMRVGEPFKLFMYANTREKDLALFRDIAARSEGTVPPEESAPAPQSAEDVGWRELVPA 205
Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
FMISELRR+F IGFLI LPFL+ID+IVA+++M+ GMMMLPP ISLPFKVIFFVLIDGW
Sbjct: 206 FMISELRRAFSIGFLIYLPFLVIDLIVASVLMSAGMMMLPPVLISLPFKVIFFVLIDGWY 265
Query: 236 LLVENLVKSFI 246
+L +L++S++
Sbjct: 266 MLAGSLMESYL 276
>gi|292493587|ref|YP_003529026.1| flagellar biosynthetic protein FliP [Nitrosococcus halophilus Nc4]
gi|291582182|gb|ADE16639.1| flagellar biosynthetic protein FliP [Nitrosococcus halophilus Nc4]
Length = 269
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 94/231 (40%), Positives = 143/231 (61%), Gaps = 4/231 (1%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
L V + T ++ G+ T L++ P ++M+T F R I+V SILR
Sbjct: 39 GLAAPGVPALAVTTEGSGEQTYTVTLQILGLMTALTLLPAAVMMMTSFTRIIVVLSILRQ 98
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G+ P + ++I L LF+TF++M P LD++ + G++P + +I+ T A+ R EPF
Sbjct: 99 ALGLAQTPSSQILIGLTLFLTFFIMGPVLDKAYQEGVRPYLQEEISVTEALVRTREPFRH 158
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM TRE DL LF ++A + + +L+P+F+ SEL+ +F+IGFL+ +P
Sbjct: 159 FMMAQTRETDLQLFAEIAGQ----KAFESPAQVPFSLLVPAFITSELKTAFQIGFLLFIP 214
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FLIID++VA+++MAMGMMML P +SLPFK++ FVLIDGWSLL+ L SF
Sbjct: 215 FLIIDLVVASVLMAMGMMMLSPMLVSLPFKLLLFVLIDGWSLLMGTLASSF 265
>gi|288962691|ref|YP_003452985.1| flagellar biosynthetic protein [Azospirillum sp. B510]
gi|288914957|dbj|BAI76441.1| flagellar biosynthetic protein [Azospirillum sp. B510]
Length = 279
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 106/235 (45%), Positives = 163/235 (69%), Gaps = 11/235 (4%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+L + ++ S+S IV+ + T+LS+AP LLIMVTCF R I+V S+LR+ +G+
Sbjct: 43 NLGALGSLADGASLSGRIVQGIVLLTVLSVAPGLLIMVTCFTRIIVVLSLLRSALGLQQS 102
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN+V++SLA+F+TF++M P +D + + G++PL+N Q+T+ ++R+ EPF FM ++ R
Sbjct: 103 PPNMVLVSLAMFLTFHIMGPVIDSAWQDGLRPLLNEQVTQEQGLERMIEPFRGFMASHVR 162
Query: 142 EKDLSLFMDMAHSSHRNTDIT-----------KNDHIEYRILIPSFMISELRRSFEIGFL 190
E+DL+ F + + ++ R+L+P+F++SELRR+FEIGFL
Sbjct: 163 ERDLAAFAAFTAKPKPAGEEAAQPPEKDGRPVTAESVDLRLLMPAFLLSELRRAFEIGFL 222
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ LPFL+IDM+VA I+MAMGMMMLPP I+LPFK+IFFVL DGW L+ +L++S+
Sbjct: 223 LFLPFLVIDMVVAAILMAMGMMMLPPVMIALPFKIIFFVLTDGWFLIAGSLIRSY 277
>gi|323961992|gb|EGB57591.1| flagellar biosynthetic protein FliP [Escherichia coli H489]
Length = 245
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 97/238 (40%), Positives = 151/238 (63%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ + +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLVTPLAFAQLPGINSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|238764402|ref|ZP_04625352.1| Flagellar biosynthetic protein fliP [Yersinia kristensenii ATCC
33638]
gi|238697428|gb|EEP90195.1| Flagellar biosynthetic protein fliP [Yersinia kristensenii ATCC
33638]
Length = 243
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 147/245 (60%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M + L L+ A+ + + V+T T LS P L+M+T
Sbjct: 1 MNKVPLLLLTLLCSPTALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +LR +G S PPN V++ LALF+TF++MSP D+ + P ++I+
Sbjct: 61 SFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKIS 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ + ++P FM TRE DL+L+ +A+ + + + RIL+P+++ SE
Sbjct: 121 MEVAMDKGSQPLREFMLRQTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSE 176
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +
Sbjct: 177 LKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGS 236
Query: 241 LVKSF 245
L +SF
Sbjct: 237 LAQSF 241
>gi|218460348|ref|ZP_03500439.1| flagellar biosynthesis protein FliP [Rhizobium etli Kim 5]
Length = 245
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 154/246 (62%), Positives = 199/246 (80%), Gaps = 3/246 (1%)
Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
MIR+ F + PEL A+ D++N+P D S++ WI+RTFG+ TILS+AP +LIMV
Sbjct: 1 MIRFIIFLTAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61 TSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQSGVQPLLANQI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
ET A+QR+AEPF FM NTR+KDL+LF+D+A R I +D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLARE--RGQTIQTSDPIDYRVLIPAFMIS 178
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238
Query: 240 NLVKSF 245
+LV+SF
Sbjct: 239 SLVRSF 244
>gi|294636880|ref|ZP_06715210.1| flagellar biosynthetic protein FliP [Edwardsiella tarda ATCC 23685]
gi|291089910|gb|EFE22471.1| flagellar biosynthetic protein FliP [Edwardsiella tarda ATCC 23685]
Length = 246
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 98/245 (40%), Positives = 151/245 (61%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++RY L+ A+ + + V+T T LS P +L+++T
Sbjct: 4 ILRYTLLPGLLLCAPAALAQLPGIISQPLAHGGQSWSLPVQTLVFLTSLSFLPAVLLLMT 63
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +LR +G S PPN V++ LALF+TF++MSP LD+ + QP +I+
Sbjct: 64 SFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVLDKIYQDAYQPFSEQKIS 123
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
TA++R A+P FM TRE DL+LF +A + + + RIL+P+++ SE
Sbjct: 124 METALERGAKPLRAFMLRQTRETDLALFARLAKQP----QMQGPEDVPLRILLPAYVTSE 179
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +
Sbjct: 180 LKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGS 239
Query: 241 LVKSF 245
L +SF
Sbjct: 240 LAQSF 244
>gi|39936951|ref|NP_949227.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
CGA009]
gi|192292779|ref|YP_001993384.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
TIE-1]
gi|39650808|emb|CAE29331.1| putative flagellar biosynthesis protein fliP [Rhodopseudomonas
palustris CGA009]
gi|192286528|gb|ACF02909.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
TIE-1]
Length = 254
Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 110/241 (45%), Positives = 162/241 (67%), Gaps = 6/241 (2%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A+ ++ ++ ++ + T+LSIAP +L+M+T F R
Sbjct: 16 VLIIAVLAMIAPAQAQDISINL--GGNSPGVTERAIQLIALLTVLSIAPSILVMMTSFTR 73
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
++V S+LRT +G + PPN VII+LALF+T +VM PTL +S + GI+PL+ N+I A
Sbjct: 74 IVVVLSLLRTALGTATAPPNAVIIALALFLTAFVMGPTLQKSYDEGIKPLIANEIGVDDA 133
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+ R + P +FM+ N REKDL LF+D++ T + + RIL+P+F+ISEL+R+
Sbjct: 134 MVRASGPLRIFMQKNVREKDLKLFLDLSGEPPPAT----PEDLSLRILMPAFLISELKRA 189
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
FEIGFL+ LPFLIID++VA+I+M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ +LV+S
Sbjct: 190 FEIGFLLFLPFLIIDLVVASILMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQS 249
Query: 245 F 245
+
Sbjct: 250 Y 250
>gi|86146126|ref|ZP_01064452.1| flagellar biosynthesis protein [Vibrio sp. MED222]
gi|218708833|ref|YP_002416454.1| flagellar biosynthesis protein FliP [Vibrio splendidus LGP32]
gi|85836073|gb|EAQ54205.1| flagellar biosynthesis protein [Vibrio sp. MED222]
gi|218321852|emb|CAV17828.1| Flagellar biosynthetic protein fliP [Vibrio splendidus LGP32]
Length = 309
Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 87/224 (38%), Positives = 137/224 (61%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 89 PAFTMTTNANGGEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 148
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +A+F+TF++MSP + + E +QP +N QI+ A P FM TR
Sbjct: 149 PSNQVIIGIAIFLTFFIMSPVISQVNEQAVQPYLNEQISARQAFDVAQGPIKSFMLKQTR 208
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++++ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 209 IKDLETFVEISG-----AQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 263
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 264 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307
>gi|254473298|ref|ZP_05086695.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062]
gi|211957414|gb|EEA92617.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062]
Length = 251
Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 123/241 (51%), Positives = 163/241 (67%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A+ + S S I++ I T+LS+AP +LIMVT F R
Sbjct: 10 FLSLFALFWVAPASAQEINLSDLLPAGQASASGRIIQYVMILTVLSLAPGILIMVTSFTR 69
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
F++ S LR+G+G+ + P N+++ISLALFMTFYVM+PT D + + G+QPL+ +I+E A
Sbjct: 70 FVVALSFLRSGIGLQTTPANIILISLALFMTFYVMAPTFDAAWKNGLQPLIKEEISEEVA 129
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+ + +PF FM +N REKDL LF D+A S+ + ++ R+LIP+FMISELRR
Sbjct: 130 YEEMTKPFRRFMLDNVREKDLVLFDDLAVSAFNYEKDAPVEELDLRVLIPAFMISELRRG 189
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
FEIGFLI LPF++IDMIVATI M+MGMMMLPPT ISLPFKV+FFVLIDGW LL L++S
Sbjct: 190 FEIGFLIALPFVVIDMIVATITMSMGMMMLPPTVISLPFKVLFFVLIDGWYLLTGGLIRS 249
Query: 245 F 245
F
Sbjct: 250 F 250
>gi|240145488|ref|ZP_04744089.1| flagellar biosynthetic protein FliP [Roseburia intestinalis L1-82]
gi|257202303|gb|EEV00588.1| flagellar biosynthetic protein FliP [Roseburia intestinalis L1-82]
Length = 299
Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 98/232 (42%), Positives = 149/232 (64%), Gaps = 11/232 (4%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
++I D + VR + TI++++P LLIM+T + R +IV LRT +G + PPN
Sbjct: 67 LSISINNDEAGVASEVRALLLLTIIAVSPSLLIMLTSYTRIVIVLHFLRTAIGTQTAPPN 126
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
++I LALF+TF++M PT + E IQPL N IT A++ P FM + KD
Sbjct: 127 QILIGLALFLTFFIMWPTFQQINENAIQPLDNGDITIEEALKEAEVPIRQFMYGQVQRKD 186
Query: 145 LSLFMDMAH-----------SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
+ LF+DMA + + + D I I+IPSF+I ELR++F +GF+I +
Sbjct: 187 VKLFVDMAGDSYDIDSAALEKEYEESGQSAYDAIPMTIMIPSFVIGELRQAFIMGFVIYI 246
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PF++IDM+VA+++M+MGMMMLPPT+ISLPFK++ F+L DGW+L++ ++VK+F
Sbjct: 247 PFIVIDMVVASVLMSMGMMMLPPTTISLPFKILLFILADGWNLVIGSVVKTF 298
>gi|163850069|ref|YP_001638112.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
PA1]
gi|163661674|gb|ABY29041.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens
PA1]
Length = 260
Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 123/224 (54%), Positives = 162/224 (72%), Gaps = 2/224 (0%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
D + P + + S I++ + T+LS+AP LL+MVT F RF + FS LR+G+G+ S
Sbjct: 38 PGLDALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQST 97
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P NL ++SLALFMTFYVM+PT DR+ G++PL N+I+E A ++ +PF FM + R
Sbjct: 98 PANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVR 157
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F D+A + + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+I
Sbjct: 158 PKDLQTFTDLASRTFPK--AEAGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDII 215
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
V+TIVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV LV+SF
Sbjct: 216 VSTIVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259
>gi|7387672|sp|O85133|FLIP_RHOSH RecName: Full=Flagellar biosynthetic protein fliP
gi|3435109|gb|AAC32322.1| flagellar protein FliP [Rhodobacter sphaeroides]
Length = 301
Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 90/223 (40%), Positives = 136/223 (60%), Gaps = 4/223 (1%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
+ + ++ + T L++ P L++ ++ F R IIV SILR +G P
Sbjct: 80 PAISVTEGTGGTSYLLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTP 139
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN V+I+LALF+TF+VM PTL E + P ++ QI AI+R F+ NTR+
Sbjct: 140 PNQVLIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQ 199
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
DL +F D+A + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++
Sbjct: 200 NDLLMFSDLAG----AGPYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVI 255
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+I+MA+GMMML P +SLPFK++ FVL+DGW+L V +L S+
Sbjct: 256 ASILMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAASY 298
>gi|283832657|ref|ZP_06352398.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC
29220]
gi|291072331|gb|EFE10440.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC
29220]
Length = 245
Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 96/241 (39%), Positives = 150/241 (62%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
A + + A+ +P + V+T T L+ P +L+M+T F R
Sbjct: 7 ITLAGLWLFSPVALAQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTR 66
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A
Sbjct: 67 IIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEA 126
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+++ A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL+ +
Sbjct: 127 MEKGAQPLREFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTA 182
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +S
Sbjct: 183 FQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQS 242
Query: 245 F 245
F
Sbjct: 243 F 243
>gi|148256782|ref|YP_001241367.1| flagellar biosynthesis protein FliP [Bradyrhizobium sp. BTAi1]
gi|146408955|gb|ABQ37461.1| Flagellar transport protein FliP [Bradyrhizobium sp. BTAi1]
Length = 234
Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 113/217 (52%), Positives = 159/217 (73%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
P + ++ V+ + T+LSIAP +LIM+T F R ++V S+LRT MG + PPN VII
Sbjct: 20 GPGNGGVTERAVQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNAVII 79
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
+LA+F+T +VM P L +S + G++PL+ NQI A+QR + P FM+ N REKDL LF
Sbjct: 80 ALAMFLTAFVMGPVLQKSYDDGVRPLIENQIGVEDALQRASVPLRGFMQKNVREKDLKLF 139
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
MD++ + T D + RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+
Sbjct: 140 MDLSGEAPPAT----PDELSLRILVPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMS 195
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP +SLPFK+IFFVL+DGWSL+ +LV+S+
Sbjct: 196 MGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 232
>gi|205352327|ref|YP_002226128.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205272108|emb|CAR36961.1| flagellar biosynthetic protein flip precursor [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|326627377|gb|EGE33720.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 245
Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 94/244 (38%), Positives = 148/244 (60%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + A + A+ + + +T T L+ P +L+M+T
Sbjct: 4 LLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSAQTLVFITSLTFLPAILLMMTS 63
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 64 FTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISM 123
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL
Sbjct: 124 QEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSEL 179
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L
Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239
Query: 242 VKSF 245
+SF
Sbjct: 240 AQSF 243
>gi|291536019|emb|CBL09131.1| flagellar biosynthetic protein FliP [Roseburia intestinalis M50/1]
gi|291538511|emb|CBL11622.1| flagellar biosynthetic protein FliP [Roseburia intestinalis XB6B4]
Length = 299
Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats.
Identities = 98/232 (42%), Positives = 149/232 (64%), Gaps = 11/232 (4%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
++I D + VR + TI++++P LLIM+T + R +IV LRT +G + PPN
Sbjct: 67 LSISINNDEAGVASEVRALLLLTIIAVSPSLLIMLTSYTRIVIVLHFLRTAIGTQTAPPN 126
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
++I LALF+TF++M PT + E IQPL N IT A++ P FM + KD
Sbjct: 127 QILIGLALFLTFFIMWPTFQQINENAIQPLDNGDITIEEALKEAEVPIRQFMYGQVQRKD 186
Query: 145 LSLFMDMAH-----------SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
+ LF+DMA + + + D I I+IPSF+I ELR++F +GF+I +
Sbjct: 187 VKLFVDMAGDSYDIDSAALEKEYEESGQSAYDAIPMTIMIPSFIIGELRQAFIMGFVIYI 246
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PF++IDM+VA+++M+MGMMMLPPT+ISLPFK++ F+L DGW+L++ ++VK+F
Sbjct: 247 PFIVIDMVVASVLMSMGMMMLPPTTISLPFKILLFILADGWNLVIGSVVKTF 298
>gi|313144838|ref|ZP_07807031.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG
18818]
gi|313129869|gb|EFR47486.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG
18818]
Length = 266
Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats.
Identities = 103/225 (45%), Positives = 149/225 (66%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
S+ + P + + + I T+L IAP L++++T F R +IVF+ LRT +G
Sbjct: 45 PSVDLSLTAPQEPTELVATLNIVLIITLLVIAPSLVLVMTSFTRIVIVFAFLRTALGTQQ 104
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PP V++SLAL +TF++M P +S E+GI+P QI+ A +R PF FM NT
Sbjct: 105 SPPTQVLVSLALVLTFFIMEPVATKSYEVGIKPYTEKQISYDEAFERAIVPFKDFMIKNT 164
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +LIP+FMISEL+ +F IGFL+ LPFL+IDM
Sbjct: 165 REKDLALFFRIRNLENPQT----VDDVPLTVLIPAFMISELKTAFWIGFLLYLPFLVIDM 220
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++++++MAMGMMMLPP ISLPFK++ FVL+DGW+LL+ NLV+ F
Sbjct: 221 VISSVLMAMGMMMLPPVMISLPFKILVFVLVDGWNLLIGNLVQGF 265
>gi|310764878|gb|ADP09828.1| Flagellar biosynthetic protein FliP [Erwinia sp. Ejp617]
Length = 247
Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats.
Identities = 94/244 (38%), Positives = 151/244 (61%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + + P + ++ + P T V+T + + L+ P +L+M+T
Sbjct: 6 VLRALLLVAGMLPAVGALAANSDITLASPQGNGGWTLPVQTLVLLSSLTFLPAVLLMMTG 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIV ++R +G + PPN V++ LALF+TFYVMSP ++ E QPL ++IT
Sbjct: 66 FTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMSPVFNQIYEQAWQPLQEDKITM 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+++ +P FM + TRE DL++F +A + + + IL+P+F+ SEL
Sbjct: 126 EVALEQGVKPLRAFMLDQTRENDLAMFAQIAK----AGEFKGPEEVPLGILVPAFVTSEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +L
Sbjct: 182 KTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGSL 241
Query: 242 VKSF 245
+SF
Sbjct: 242 AQSF 245
>gi|306817703|ref|ZP_07451445.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris ATCC
35239]
gi|304649517|gb|EFM46800.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris ATCC
35239]
Length = 425
Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats.
Identities = 81/210 (38%), Positives = 133/210 (63%), Gaps = 4/210 (1%)
Query: 36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95
T V F + T+LS+AP LL+M+T F + IV ++ R +G+ +PP V+ LA+F++
Sbjct: 219 PTTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLS 278
Query: 96 FYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
++M+PT++ +QPL + +I + +PF FM TRE+D++L A+
Sbjct: 279 LFIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIALMTRAANRP 338
Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
+ D + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLP
Sbjct: 339 NP----ESLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLP 394
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
P +SLPFKV+ FV++DGW +L + L+ ++
Sbjct: 395 PVMVSLPFKVLLFVMVDGWGMLTQTLIGTY 424
>gi|218549273|ref|YP_002383064.1| flagellar biosynthesis protein FliP [Escherichia fergusonii ATCC
35469]
gi|218356814|emb|CAQ89442.1| flagellar biosynthesis protein [Escherichia fergusonii ATCC 35469]
Length = 245
Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats.
Identities = 100/245 (40%), Positives = 155/245 (63%), Gaps = 5/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ L+LVTP A+ +P + V+T T L+ P +L+M+T
Sbjct: 4 LLTLIPAILWLVTP-CALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMT 62
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 63 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKIS 122
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+++ A+P FM TRE DL+LF +A++ I + + RIL+P+++ SE
Sbjct: 123 MQEALEKGAQPLREFMLRQTREADLALFARLANTG----PIQGPEAVPMRILLPAYVTSE 178
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +
Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238
Query: 241 LVKSF 245
L +SF
Sbjct: 239 LAQSF 243
>gi|170743261|ref|YP_001771916.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46]
gi|168197535|gb|ACA19482.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46]
Length = 283
Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats.
Identities = 101/230 (43%), Positives = 162/230 (70%), Gaps = 4/230 (1%)
Query: 16 LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
A + +++ ++ ++ + T+L++AP +L+M T F R ++V SILR+
Sbjct: 56 SATAGLAQSVTVDLGPSGGVTERALQLVALITVLALAPSVLVMATAFTRIVVVLSILRSA 115
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
+G + PPN VI+SLALF+T +VM+PT + GI+PL+ QI+++ A +R ++PF F
Sbjct: 116 LGTQTAPPNAVIVSLALFLTAFVMAPTAREAYRTGIEPLVAGQISQSQAFERASQPFKAF 175
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
M + REKDL LF+D++++ T + + IL P+FMISELRR+FEIGFL+ +PF
Sbjct: 176 MLRSVREKDLRLFLDLSNAPRPAT----PEAVGLEILTPAFMISELRRAFEIGFLLFIPF 231
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LIID++VA+++M++GMMMLPP +++LPFK+IFFVL+DGW+L+ +LV+S+
Sbjct: 232 LIIDLVVASVLMSVGMMMLPPATVALPFKLIFFVLVDGWTLVAGSLVQSY 281
>gi|322806978|emb|CBZ04548.1| flagellar biosynthesis protein FliP [Clostridium botulinum H04402
065]
Length = 258
Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats.
Identities = 97/244 (39%), Positives = 152/244 (62%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I + + P+ ++ ++ + + ++ + T+L++ P ++M+T
Sbjct: 18 IVFFYSMKAYAAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTS 77
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VF LR MG PPN V+I LALF+T ++M P IQP M N+IT+
Sbjct: 78 FVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQPYMKNKITQ 137
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A++ A+P FM TR+KDL LF+D+A + + T D+ I++P+F+ISEL
Sbjct: 138 EQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKPNFKVTK----DNAPLYIVVPAFIISEL 193
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LLV++L
Sbjct: 194 KTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSL 253
Query: 242 VKSF 245
V SF
Sbjct: 254 VMSF 257
>gi|307318918|ref|ZP_07598349.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti AK83]
gi|12057226|gb|AAB81419.2| FliP [Sinorhizobium meliloti]
gi|306895332|gb|EFN26087.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti AK83]
Length = 245
Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats.
Identities = 142/247 (57%), Positives = 195/247 (78%), Gaps = 3/247 (1%)
Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
M+R+ F + + A+S D++N P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1 MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I
Sbjct: 61 TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
+ET AIQR++EPF FM NTR+KDL LF+D+A + + ++ ++ R ++P+FMIS
Sbjct: 121 SETDAIQRMSEPFREFMLANTRDKDLQLFIDIARE--KGQTVVVDEKVDLRAVVPAFMIS 178
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV
Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238
Query: 240 NLVKSFI 246
+LV+SFI
Sbjct: 239 SLVRSFI 245
>gi|16765317|ref|NP_460932.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167993554|ref|ZP_02574648.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|1706856|sp|P54700|FLIP_SALTY RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor
gi|1066863|gb|AAB81319.1| fliP [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|16420514|gb|AAL20891.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|205328373|gb|EDZ15137.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|261247145|emb|CBG24968.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993968|gb|ACY88853.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301158493|emb|CBW18003.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912969|dbj|BAJ36943.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321224624|gb|EFX49687.1| Flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323130258|gb|ADX17688.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332988868|gb|AEF07851.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 245
Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats.
Identities = 94/244 (38%), Positives = 149/244 (61%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + A + A+ + + V+T T L+ P +L+M+T
Sbjct: 4 LLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTS 63
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 64 FTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISM 123
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL
Sbjct: 124 QEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSEL 179
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +L
Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGSL 239
Query: 242 VKSF 245
+SF
Sbjct: 240 AQSF 243
>gi|312172107|emb|CBX80364.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora
ATCC BAA-2158]
Length = 245
Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats.
Identities = 94/241 (39%), Positives = 146/241 (60%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
+ V+A+ + V+T T L+ P +L+M+T F R
Sbjct: 7 LLLPALFMLAPNVYAQLPGLISQPTANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTR 66
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIVF +LR +G S PPN V++ L+LF+TF++M P D+ QP ++I+ A
Sbjct: 67 IIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKIYTDAYQPFSEDKISMQEA 126
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
I + A+P FM TRE DL+LF +A++ I + + RIL+P+++ SEL+ +
Sbjct: 127 IDKGAQPLREFMLRQTREADLALFARLANTP----PIAGPEAVPMRILLPAYVTSELKTA 182
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +S
Sbjct: 183 FQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVSSLAQS 242
Query: 245 F 245
F
Sbjct: 243 F 243
>gi|328496288|gb|AEB21292.1| FliP [Yersinia ruckeri]
Length = 263
Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats.
Identities = 93/232 (40%), Positives = 143/232 (61%), Gaps = 4/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
V A+ + + V+T + T LS P L+M+T F R IIV +LR
Sbjct: 34 SPAVCAQLPGIISQPLANGGQSWSLPVQTLVLITSLSFLPAALLMMTSFTRIIIVLGLLR 93
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+G S PPN V++ LALF+TF++MSP D+ + P ++I+ AI + A+P
Sbjct: 94 NALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMDIAIDKGAQPLR 153
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM TRE DL+L+ +A+ + + RIL+P+++ SEL+ +F+IGF + +
Sbjct: 154 EFMLRQTRETDLALYARLANMP----AFEGPEAVPMRILLPAYVTSELKTAFQIGFTVFI 209
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 210 PFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 261
>gi|326791526|ref|YP_004309347.1| flagellar biosynthetic protein FliP [Clostridium lentocellum DSM
5427]
gi|326542290|gb|ADZ84149.1| flagellar biosynthetic protein FliP [Clostridium lentocellum DSM
5427]
Length = 261
Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats.
Identities = 99/245 (40%), Positives = 152/245 (62%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I + L+ T ++ + + ++ ++ I TI+S+AP +LIM+T
Sbjct: 16 IILFYVGCLYTDTQASTVQVPNITVNLGGESQAENTSASLQMIFIITIISLAPSILIMMT 75
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R II +R+ +G ++PPN +++ LALF+TF+VMSP + I PL QIT
Sbjct: 76 SFLRIIIALHFVRSAIGTQTMPPNQILVGLALFLTFFVMSPVFMQIKTNAIDPLEKQQIT 135
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ AI+R +P FM TR++D++LFMD+AH D + ++IP+F+ISE
Sbjct: 136 QEQAIERGIQPLKEFMLKQTRDEDITLFMDLAHLEPYTEDTDLVKEMPLHVIIPAFIISE 195
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LR F IGFL+ +PF+IIDM+VA +M+MGMMMLPP ISLPFKV+ F+L+DGW+L +
Sbjct: 196 LRAGFIIGFLVYIPFIIIDMVVAATLMSMGMMMLPPAMISLPFKVLLFILVDGWNLFIGQ 255
Query: 241 LVKSF 245
L+++F
Sbjct: 256 LIQTF 260
>gi|153941323|ref|YP_001391949.1| flagellar biosynthesis protein FliP [Clostridium botulinum F str.
Langeland]
gi|152937219|gb|ABS42717.1| flagellar biosynthetic protein FliP [Clostridium botulinum F str.
Langeland]
gi|295319967|gb|ADG00345.1| flagellar biosynthetic protein FliP [Clostridium botulinum F str.
230613]
Length = 258
Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats.
Identities = 97/244 (39%), Positives = 152/244 (62%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I + + P+ ++ ++ + + ++ + T+L++ P ++M+T
Sbjct: 18 IVFFYSMKAYAAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTS 77
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VF LR MG PPN V+I LALF+T ++M P IQP M N+IT+
Sbjct: 78 FVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMYPVYSEVNTKAIQPYMKNKITQ 137
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A++ A+P FM TR+KDL LF+D+A + + T D+ I++P+F+ISEL
Sbjct: 138 EQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKPNFKVTK----DNAPLYIVVPAFIISEL 193
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LLV++L
Sbjct: 194 KTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSL 253
Query: 242 VKSF 245
V SF
Sbjct: 254 VMSF 257
>gi|126462466|ref|YP_001043580.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC
17029]
gi|126104130|gb|ABN76808.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC
17029]
Length = 301
Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats.
Identities = 89/223 (39%), Positives = 137/223 (61%), Gaps = 4/223 (1%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
+ + + ++ + T L++ P L++ ++ F R IIV SILR +G P
Sbjct: 80 PAITVTEGTGGTSYSLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTP 139
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN V+I+LALF+TF+VM PTL E + P ++ QI AI+R F+ NTR+
Sbjct: 140 PNQVLIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQ 199
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
DL +F D+A + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++
Sbjct: 200 NDLLMFSDLAG----AGPYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVI 255
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+I+MA+GMMML P +SLPFK++ FVL+DGW+L V +L ++
Sbjct: 256 ASILMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAATY 298
>gi|150395491|ref|YP_001325958.1| flagellar biosynthesis protein FliP [Sinorhizobium medicae WSM419]
gi|150027006|gb|ABR59123.1| flagellar biosynthetic protein FliP [Sinorhizobium medicae WSM419]
Length = 245
Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats.
Identities = 140/247 (56%), Positives = 194/247 (78%), Gaps = 3/247 (1%)
Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
M+R+ F + + A+ D++N P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1 MLRFATFIIAMMAMSGIAGAQGFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I
Sbjct: 61 TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
+ET A+QR++EPF FM NTR+KDL LF+D+A + + ++ ++ R ++P+FMIS
Sbjct: 121 SETEAMQRMSEPFREFMLANTRDKDLQLFIDIAQE--KGQTVVVDEKVDLRAVVPAFMIS 178
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV
Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238
Query: 240 NLVKSFI 246
+LV+SFI
Sbjct: 239 SLVRSFI 245
>gi|85859180|ref|YP_461382.1| flagellar biosynthesis protein FliP [Syntrophus aciditrophicus SB]
gi|85722271|gb|ABC77214.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
Length = 262
Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats.
Identities = 92/249 (36%), Positives = 152/249 (61%), Gaps = 9/249 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIST-----WIVRTFGIFTILSIAPILL 56
+ ++ P + A+ +++ + + +++ I T+LS+ P +L
Sbjct: 17 VLLLVILFTVLGPGVASAEPLSLPNISLTVGGNADSPDKVATVIQLLFILTVLSLTPAIL 76
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
+M+T F R +IV S+LR MG +P N +II L+LF+TF++MSP ++P +
Sbjct: 77 LMLTSFTRIVIVLSLLRQAMGTQQMPSNQIIIGLSLFLTFFIMSPVWQSVHSEALKPYYD 136
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
+I+ AI+R P FM TREKD++LF+ ++ K + +L+P+F
Sbjct: 137 EEISGEQAIERAVIPVKAFMLKQTREKDIALFLQISKGKRP----EKPADLALSVLVPAF 192
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
+ISEL+ +F+IGFL+ LPF IIDM+VA+++++MGMMMLPP +SLPFK++ FVL+DGW L
Sbjct: 193 VISELKTAFQIGFLLFLPFFIIDMVVASVLLSMGMMMLPPIMMSLPFKLLLFVLVDGWYL 252
Query: 237 LVENLVKSF 245
++ +LV+SF
Sbjct: 253 IIGSLVQSF 261
>gi|148380606|ref|YP_001255147.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str.
ATCC 3502]
gi|153933100|ref|YP_001384893.1| flagellar biosynthesis protein FliP [Clostridium botulinum A str.
ATCC 19397]
gi|153936309|ref|YP_001388362.1| flagellar biosynthesis protein FliP [Clostridium botulinum A str.
Hall]
gi|168180927|ref|ZP_02615591.1| flagellar biosynthetic protein FliP [Clostridium botulinum NCTC
2916]
gi|168182731|ref|ZP_02617395.1| flagellar biosynthetic protein FliP [Clostridium botulinum Bf]
gi|226950061|ref|YP_002805152.1| flagellar biosynthetic protein FliP [Clostridium botulinum A2 str.
Kyoto]
gi|237796088|ref|YP_002863640.1| flagellar biosynthetic protein FliP [Clostridium botulinum Ba4 str.
657]
gi|148290090|emb|CAL84209.1| putative flagellar biosynthetic protein [Clostridium botulinum A
str. ATCC 3502]
gi|152929144|gb|ABS34644.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str.
ATCC 19397]
gi|152932223|gb|ABS37722.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str.
Hall]
gi|182668360|gb|EDT80339.1| flagellar biosynthetic protein FliP [Clostridium botulinum NCTC
2916]
gi|182674137|gb|EDT86098.1| flagellar biosynthetic protein FliP [Clostridium botulinum Bf]
gi|226841463|gb|ACO84129.1| flagellar biosynthetic protein FliP [Clostridium botulinum A2 str.
Kyoto]
gi|229260888|gb|ACQ51921.1| flagellar biosynthetic protein FliP [Clostridium botulinum Ba4 str.
657]
Length = 258
Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats.
Identities = 96/244 (39%), Positives = 152/244 (62%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I + + P+ ++ ++ + + ++ + T+L++ P ++M+T
Sbjct: 18 IVFFYSMKAYAAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTS 77
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VF LR MG PPN V+I LALF+T ++M P IQP M N+IT+
Sbjct: 78 FVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQPYMKNKITQ 137
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A++ A+P FM TR+KDL LF+++A + + T D+ I++P+F+ISEL
Sbjct: 138 EQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPNFKVTK----DNAPLYIVVPAFIISEL 193
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LLV++L
Sbjct: 194 KTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSL 253
Query: 242 VKSF 245
V SF
Sbjct: 254 VMSF 257
>gi|26248217|ref|NP_754257.1| flagellar biosynthesis protein FliP [Escherichia coli CFT073]
gi|110642054|ref|YP_669784.1| flagellar biosynthesis protein FliP [Escherichia coli 536]
gi|110805917|ref|YP_689437.1| flagellar biosynthesis protein FliP [Shigella flexneri 5 str. 8401]
gi|161485898|ref|NP_707833.2| flagellar biosynthesis protein FliP [Shigella flexneri 2a str. 301]
gi|191173282|ref|ZP_03034812.1| flagellar biosynthetic protein FliP [Escherichia coli F11]
gi|218699491|ref|YP_002407120.1| flagellar biosynthesis protein FliP [Escherichia coli IAI39]
gi|227885623|ref|ZP_04003428.1| flagellar biosynthesis protein FliP [Escherichia coli 83972]
gi|300940403|ref|ZP_07154988.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1]
gi|300975537|ref|ZP_07173048.1| flagellar biosynthetic protein FliP [Escherichia coli MS 45-1]
gi|301050691|ref|ZP_07197552.1| flagellar biosynthetic protein FliP [Escherichia coli MS 185-1]
gi|306814229|ref|ZP_07448395.1| flagellar biosynthesis protein FliP [Escherichia coli NC101]
gi|331647542|ref|ZP_08348634.1| flagellar biosynthetic protein FliP [Escherichia coli M605]
gi|26108621|gb|AAN80824.1|AE016762_77 Flagellar biosynthetic protein fliP precursor [Escherichia coli
CFT073]
gi|110343646|gb|ABG69883.1| flagellar biosynthetic protein FliP precursor [Escherichia coli
536]
gi|110615465|gb|ABF04132.1| flagellar biosynthetic protein FliP [Shigella flexneri 5 str. 8401]
gi|190906399|gb|EDV66008.1| flagellar biosynthetic protein FliP [Escherichia coli F11]
gi|218369477|emb|CAR17242.1| flagellar biosynthesis protein [Escherichia coli IAI39]
gi|222033687|emb|CAP76428.1| flagellar biosynthetic protein fliP [Escherichia coli LF82]
gi|227837196|gb|EEJ47662.1| flagellar biosynthesis protein FliP [Escherichia coli 83972]
gi|281179010|dbj|BAI55340.1| flagellar biosynthetic protein FliP [Escherichia coli SE15]
gi|300297614|gb|EFJ53999.1| flagellar biosynthetic protein FliP [Escherichia coli MS 185-1]
gi|300410306|gb|EFJ93844.1| flagellar biosynthetic protein FliP [Escherichia coli MS 45-1]
gi|300454797|gb|EFK18290.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1]
gi|305852388|gb|EFM52839.1| flagellar biosynthesis protein FliP [Escherichia coli NC101]
gi|307553961|gb|ADN46736.1| flagellar biosynthetic protein FliP [Escherichia coli ABU 83972]
gi|312946541|gb|ADR27368.1| flagellar biosynthesis protein FliP [Escherichia coli O83:H1 str.
NRG 857C]
gi|315290265|gb|EFU49643.1| flagellar biosynthetic protein FliP [Escherichia coli MS 153-1]
gi|315296482|gb|EFU55779.1| flagellar biosynthetic protein FliP [Escherichia coli MS 16-3]
gi|320194339|gb|EFW68970.1| Flagellar biosynthesis protein FliP [Escherichia coli WV_060327]
gi|323186704|gb|EFZ72026.1| flagellar biosynthetic protein FliP [Escherichia coli RN587/1]
gi|324005853|gb|EGB75072.1| flagellar biosynthetic protein FliP [Escherichia coli MS 57-2]
gi|324013503|gb|EGB82722.1| flagellar biosynthetic protein FliP [Escherichia coli MS 60-1]
gi|330911754|gb|EGH40264.1| flagellar biosynthesis protein FliP [Escherichia coli AA86]
gi|331043266|gb|EGI15404.1| flagellar biosynthetic protein FliP [Escherichia coli M605]
gi|333004053|gb|EGK23587.1| flagellar biosynthetic protein FliP [Shigella flexneri K-272]
gi|333017826|gb|EGK37133.1| flagellar biosynthetic protein FliP [Shigella flexneri K-227]
Length = 245
Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats.
Identities = 97/238 (40%), Positives = 150/238 (63%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|332756104|gb|EGJ86457.1| flagellar biosynthetic protein FliP [Shigella flexneri 4343-70]
gi|333003359|gb|EGK22905.1| flagellar biosynthetic protein FliP [Shigella flexneri K-218]
Length = 245
Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats.
Identities = 96/238 (40%), Positives = 150/238 (63%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +++ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVINKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|330445376|ref|ZP_08309028.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489567|dbj|GAA03525.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 282
Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats.
Identities = 94/224 (41%), Positives = 141/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
V P + ++ + T L P ++I++T F R ++V SILR MG+
Sbjct: 62 PALSVTVNPDGSEDYSVTLQILALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 121
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF+VMSP +D+ +QP +N QIT A+++ +P FM TR
Sbjct: 122 PSNQVIIGIALFLTFFVMSPVIDKINTEAVQPYINEQITAKQALEKAEDPMRQFMLKQTR 181
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ S+ ++ +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 182 VKDLETFVNMSGST-----ADDPQNVPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 236
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 237 VASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 280
>gi|94266368|ref|ZP_01290067.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1]
gi|93453020|gb|EAT03508.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1]
Length = 252
Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats.
Identities = 98/237 (41%), Positives = 151/237 (63%), Gaps = 9/237 (3%)
Query: 14 PELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
P L A+ ++ + + ++ + T+LS+AP +L+M+TCF R I+V
Sbjct: 19 PTLAGAQEAIPLPTFSLGIEEATTPGQVSMTIQLLLVLTVLSMAPAILLMMTCFTRLIVV 78
Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
FS LR +G +PPN V+I LALF+T ++M+P + + + P M+ +I A++
Sbjct: 79 FSFLRNAIGTQQMPPNQVLIGLALFLTVFIMAPVFSQINQQAVGPYMDEEIGIEEALRTA 138
Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
AEP FM TREKDL LF+ ++ S D + +LIP+FMISEL+ +F IG
Sbjct: 139 AEPLREFMFKQTREKDLELFLGLSQSPRP----QNKDDVSTFVLIPAFMISELKTAFTIG 194
Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
F++ +PFL+IDM+VA+++++MGMMMLPP I+LPFK++ FVL+DGW L+V +LV+SF
Sbjct: 195 FILFIPFLVIDMVVASVLLSMGMMMLPPIMIALPFKILLFVLVDGWYLIVGSLVRSF 251
>gi|237731996|ref|ZP_04562477.1| flagellar biosynthesis protein FliP [Citrobacter sp. 30_2]
gi|226907535|gb|EEH93453.1| flagellar biosynthesis protein FliP [Citrobacter sp. 30_2]
Length = 245
Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats.
Identities = 99/245 (40%), Positives = 155/245 (63%), Gaps = 5/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ L+L +P + A+ +P T V+T T L+ P +L+M+T
Sbjct: 4 LLSLTLAGLWLFSP-VALAQLPGLVSQPLPGGGQNWTLPVQTLVFITSLTFLPAILLMMT 62
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 63 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKIS 122
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+++ A+P FM TRE DL+LF +A+S + + + RIL+P+++ SE
Sbjct: 123 MQEAMEKGAQPLREFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSE 178
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +
Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKMMLFVLVDGWQLLVGS 238
Query: 241 LVKSF 245
L +SF
Sbjct: 239 LAQSF 243
>gi|126442020|ref|YP_001057087.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 668]
gi|126453057|ref|YP_001064317.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
1106a]
gi|134281410|ref|ZP_01768118.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 305]
gi|217423958|ref|ZP_03455458.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 576]
gi|226193182|ref|ZP_03788792.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
Pakistan 9]
gi|237814425|ref|YP_002898876.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
MSHR346]
gi|242316101|ref|ZP_04815117.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
1106b]
gi|254184095|ref|ZP_04890686.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
1655]
gi|254186561|ref|ZP_04893078.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
Pasteur 52237]
gi|254194632|ref|ZP_04901063.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei S13]
gi|42766712|gb|AAS45439.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei]
gi|126221513|gb|ABN85019.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 668]
gi|126226699|gb|ABN90239.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
1106a]
gi|134247077|gb|EBA47163.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 305]
gi|157934246|gb|EDO89916.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
Pasteur 52237]
gi|169651382|gb|EDS84075.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei S13]
gi|184214627|gb|EDU11670.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
1655]
gi|217393021|gb|EEC33043.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 576]
gi|225934782|gb|EEH30759.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
Pakistan 9]
gi|237505052|gb|ACQ97370.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
MSHR346]
gi|242139340|gb|EES25742.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
1106b]
Length = 276
Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats.
Identities = 96/241 (39%), Positives = 142/241 (58%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A + P + + V+T + T+LS P +L+M+T F R
Sbjct: 39 ILIGLAPALACAQAAGLPAFNSAPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 98
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G S PPN V++ LALF+T +VMSP LDR+ +P + A
Sbjct: 99 IIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQA 158
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+QR PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+
Sbjct: 159 VQRGTAPFKAFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTG 214
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 215 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 274
Query: 245 F 245
F
Sbjct: 275 F 275
>gi|323527702|ref|YP_004229855.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1001]
gi|323384704|gb|ADX56795.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1001]
Length = 277
Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats.
Identities = 100/240 (41%), Positives = 150/240 (62%), Gaps = 7/240 (2%)
Query: 10 FLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
P L FA+++ N P + + V+T + T+LS P +++M+T F R I
Sbjct: 42 MFALPSLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRII 101
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IV S+LR +G + PPN V++ LALF+T +VMSP LD++ G +P + TA+
Sbjct: 102 IVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGTVPMETAVS 161
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
R PF FM TRE DL+LF ++H + + + +L+PSF+ SEL+ F+
Sbjct: 162 RGLAPFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFQ 217
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 218 IGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 277
>gi|269836609|ref|YP_003318837.1| flagellar biosynthetic protein FliP [Sphaerobacter thermophilus DSM
20745]
gi|269785872|gb|ACZ38015.1| flagellar biosynthetic protein FliP [Sphaerobacter thermophilus DSM
20745]
Length = 274
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 93/242 (38%), Positives = 141/242 (58%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ +L A+ + + F + T L++ P LL+MVT F
Sbjct: 36 ILWLPSCTADAQLGDAQLRIDSGGAATGSAGTVNSGLELFVLLTFLALLPTLLMMVTSFT 95
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R IIV S R +G+ +PPN V++ LALF+T ++M+P +QP + +I +
Sbjct: 96 RVIIVLSFARNAIGVPQLPPNQVLLGLALFLTIFIMAPVWQEVNRTALQPYLAGEIAQAE 155
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A+ R P FM TRE+DL+LFM + T D + +L+PSF++SEL+
Sbjct: 156 AMDRAVRPLREFMLRQTRERDLALFMQLGQQPRPRT----PDDVPTWVLVPSFIVSELKT 211
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F++GF+I +PFLIIDMIV++ +M+MGM+MLPP +SLPFKV+ FV++DGW L+V +LV
Sbjct: 212 AFQMGFVIFIPFLIIDMIVSSALMSMGMIMLPPVIVSLPFKVLLFVMVDGWDLIVRSLVM 271
Query: 244 SF 245
SF
Sbjct: 272 SF 273
>gi|170019719|ref|YP_001724673.1| flagellar biosynthesis protein FliP [Escherichia coli ATCC 8739]
gi|187730211|ref|YP_001879727.1| flagellar biosynthesis protein FliP [Shigella boydii CDC 3083-94]
gi|209919370|ref|YP_002293454.1| flagellar biosynthesis protein FliP [Escherichia coli SE11]
gi|218705441|ref|YP_002412960.1| flagellar biosynthesis protein FliP [Escherichia coli UMN026]
gi|260855923|ref|YP_003229814.1| flagellar biosynthesis protein FliP [Escherichia coli O26:H11 str.
11368]
gi|260868541|ref|YP_003234943.1| flagellar biosynthesis protein FliP [Escherichia coli O111:H- str.
11128]
gi|293405431|ref|ZP_06649423.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1412]
gi|298381075|ref|ZP_06990674.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1302]
gi|300822282|ref|ZP_07102423.1| flagellar biosynthetic protein FliP [Escherichia coli MS 119-7]
gi|300899205|ref|ZP_07117481.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1]
gi|300904838|ref|ZP_07122664.1| flagellar biosynthetic protein FliP [Escherichia coli MS 84-1]
gi|300931161|ref|ZP_07146508.1| flagellar biosynthetic protein FliP [Escherichia coli MS 187-1]
gi|300951573|ref|ZP_07165406.1| flagellar biosynthetic protein FliP [Escherichia coli MS 116-1]
gi|300956536|ref|ZP_07168818.1| flagellar biosynthetic protein FliP [Escherichia coli MS 175-1]
gi|301018202|ref|ZP_07182717.1| flagellar biosynthetic protein FliP [Escherichia coli MS 69-1]
gi|301304257|ref|ZP_07210372.1| flagellar biosynthetic protein FliP [Escherichia coli MS 124-1]
gi|301327735|ref|ZP_07220940.1| flagellar biosynthetic protein FliP [Escherichia coli MS 78-1]
gi|301644593|ref|ZP_07244582.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1]
gi|307312466|ref|ZP_07592100.1| flagellar biosynthetic protein FliP [Escherichia coli W]
gi|312967145|ref|ZP_07781363.1| flagellar biosynthetic protein FliP [Escherichia coli 2362-75]
gi|331668639|ref|ZP_08369487.1| flagellar biosynthetic protein FliP [Escherichia coli TA271]
gi|331673461|ref|ZP_08374229.1| flagellar biosynthetic protein FliP [Escherichia coli TA280]
gi|169754647|gb|ACA77346.1| flagellar biosynthetic protein FliP [Escherichia coli ATCC 8739]
gi|187427203|gb|ACD06477.1| flagellar biosynthetic protein FliP [Shigella boydii CDC 3083-94]
gi|209912629|dbj|BAG77703.1| flagellar biosynthetic protein FliP [Escherichia coli SE11]
gi|218432538|emb|CAR13431.1| flagellar biosynthesis protein [Escherichia coli UMN026]
gi|257754572|dbj|BAI26074.1| flagellar biosynthesis protein FliP [Escherichia coli O26:H11 str.
11368]
gi|257764897|dbj|BAI36392.1| flagellar biosynthesis protein FliP [Escherichia coli O111:H- str.
11128]
gi|291427639|gb|EFF00666.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1412]
gi|298278517|gb|EFI20031.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1302]
gi|300316636|gb|EFJ66420.1| flagellar biosynthetic protein FliP [Escherichia coli MS 175-1]
gi|300357186|gb|EFJ73056.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1]
gi|300399789|gb|EFJ83327.1| flagellar biosynthetic protein FliP [Escherichia coli MS 69-1]
gi|300403265|gb|EFJ86803.1| flagellar biosynthetic protein FliP [Escherichia coli MS 84-1]
gi|300449200|gb|EFK12820.1| flagellar biosynthetic protein FliP [Escherichia coli MS 116-1]
gi|300461018|gb|EFK24511.1| flagellar biosynthetic protein FliP [Escherichia coli MS 187-1]
gi|300525165|gb|EFK46234.1| flagellar biosynthetic protein FliP [Escherichia coli MS 119-7]
gi|300840514|gb|EFK68274.1| flagellar biosynthetic protein FliP [Escherichia coli MS 124-1]
gi|300845735|gb|EFK73495.1| flagellar biosynthetic protein FliP [Escherichia coli MS 78-1]
gi|301077068|gb|EFK91874.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1]
gi|306907637|gb|EFN38140.1| flagellar biosynthetic protein FliP [Escherichia coli W]
gi|309702237|emb|CBJ01554.1| flagellar biosynthetic protein FliP [Escherichia coli ETEC H10407]
gi|312288609|gb|EFR16511.1| flagellar biosynthetic protein FliP [Escherichia coli 2362-75]
gi|315061248|gb|ADT75575.1| flagellar biosynthesis protein [Escherichia coli W]
gi|315257220|gb|EFU37188.1| flagellar biosynthetic protein FliP [Escherichia coli MS 85-1]
gi|323152721|gb|EFZ38993.1| flagellar biosynthetic protein FliP [Escherichia coli EPECa14]
gi|323180799|gb|EFZ66339.1| flagellar biosynthetic protein FliP [Escherichia coli 1180]
gi|323378175|gb|ADX50443.1| flagellar biosynthetic protein FliP [Escherichia coli KO11]
gi|323937218|gb|EGB33498.1| flagellar biosynthetic protein FliP [Escherichia coli E1520]
gi|323940393|gb|EGB36584.1| flagellar biosynthetic protein FliP [Escherichia coli E482]
gi|323968364|gb|EGB63771.1| flagellar biosynthetic protein FliP [Escherichia coli M863]
gi|323977871|gb|EGB72957.1| flagellar biosynthetic protein FliP [Escherichia coli TW10509]
gi|324118997|gb|EGC12886.1| flagellar biosynthetic protein FliP [Escherichia coli E1167]
gi|327253080|gb|EGE64734.1| flagellar biosynthetic protein FliP [Escherichia coli STEC_7v]
gi|331063833|gb|EGI35744.1| flagellar biosynthetic protein FliP [Escherichia coli TA271]
gi|331069659|gb|EGI41046.1| flagellar biosynthetic protein FliP [Escherichia coli TA280]
gi|332093095|gb|EGI98159.1| flagellar biosynthetic protein FliP [Shigella boydii 5216-82]
Length = 245
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 97/238 (40%), Positives = 150/238 (63%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|238916764|ref|YP_002930281.1| triacylglycerol lipase [Eubacterium eligens ATCC 27750]
gi|238872124|gb|ACR71834.1| triacylglycerol lipase [Eubacterium eligens ATCC 27750]
Length = 267
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 98/236 (41%), Positives = 149/236 (63%), Gaps = 2/236 (0%)
Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
+ + +SL ++ D + +++ + T++S+AP +LIM+T F R +IV
Sbjct: 33 VMAADTDTASGNSLINIGISAGDGNDMASVLQMLLVLTVISLAPSILIMLTSFTRIVIVL 92
Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
R +G +VPPN VII L+LF+TF+VMSPT + ++PL NN+I+ A +
Sbjct: 93 HFTRAAIGTQTVPPNQVIIGLSLFLTFFVMSPTFTEIYDSALKPLSNNEISVEEAYETGV 152
Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
+P FM T KDL F +A + +T D I +L+PSF+ISELR +F IGF
Sbjct: 153 KPLKTFMLKQTSTKDLDTFFKIAG--YEEGSVTSEDDISMTVLVPSFIISELRIAFIIGF 210
Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LI +PF+IIDM+V++ +M+MGMMMLPPT+IS PFK++ FV+ DGW+L++ NL+ +F
Sbjct: 211 LIYIPFIIIDMVVSSTLMSMGMMMLPPTTISAPFKILLFVMADGWNLIIGNLITTF 266
>gi|320529418|ref|ZP_08030506.1| flagellar biosynthetic protein FliP [Selenomonas artemidis F0399]
gi|320138384|gb|EFW30278.1| flagellar biosynthetic protein FliP [Selenomonas artemidis F0399]
Length = 255
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 95/225 (42%), Positives = 151/225 (67%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
++ + + ++ + T+LS+AP +LIM T F R ++V LR + +
Sbjct: 34 PTVSLDVGTSENPQDVAASMQLLAVLTVLSLAPAMLIMTTSFVRIVVVIGFLRNALSTQN 93
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
VPPN V+++L+LF+TFY+M+P ++ E GI+P ++ QIT+ A++ V EP FM T
Sbjct: 94 VPPNQVVLALSLFLTFYIMAPYWGQANENGIRPYLDGQITQEQALENVVEPMRDFMFRQT 153
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL+LF++++ + N D + LIP+F+ISEL+ +F+IGF+I +PF++IDM
Sbjct: 154 RESDLALFVNLSDAERPN----SPDDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDM 209
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IVA+ +M+MGMMMLPP ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 210 IVASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 254
>gi|114706620|ref|ZP_01439521.1| flagellar biosynthesis protein P [Fulvimarina pelagi HTCC2506]
gi|114538012|gb|EAU41135.1| flagellar biosynthesis protein P [Fulvimarina pelagi HTCC2506]
Length = 264
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 133/233 (57%), Positives = 164/233 (70%), Gaps = 6/233 (2%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
A S + D +IS I++ FGI T+LSIAP LL+MVT F R +I SI+RTG+G+
Sbjct: 31 ADPSSLADLIPQGDGTISGRIIQLFGIVTVLSIAPGLLVMVTAFTRIVIALSIMRTGLGL 90
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
+ P NL+IISLALFMTF+VMSPT DR+ G+QPL+ N+I E A R+A+PF FM
Sbjct: 91 QTTPANLIIISLALFMTFFVMSPTFDRAWNDGLQPLLENEIDEEEAFYRIADPFKEFMLT 150
Query: 139 NTREKDLSLFMDMA------HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
R DL LF D+A IE R+LIP+FMISELRR FEIGFLI+
Sbjct: 151 QVRPSDLQLFGDIASVTDRDRVQPEEQGAADERDIELRVLIPAFMISELRRGFEIGFLIV 210
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LPFL+IDMIVAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 211 LPFLVIDMIVATLTMSMGMMMLPPTIISLPFKILFFVLIDGWNLLVGSLVRSF 263
>gi|331657994|ref|ZP_08358956.1| flagellar biosynthetic protein FliP [Escherichia coli TA206]
gi|331056242|gb|EGI28251.1| flagellar biosynthetic protein FliP [Escherichia coli TA206]
Length = 245
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 97/238 (40%), Positives = 150/238 (63%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|313895854|ref|ZP_07829408.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975279|gb|EFR40740.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 137
str. F0430]
Length = 255
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 95/225 (42%), Positives = 152/225 (67%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
++ + + ++ + T+LS+AP +LIM T F R ++V LR + +
Sbjct: 34 PTVSLDVGTSENPQDVAASMQLLAVLTVLSLAPAMLIMTTSFVRIVVVIGFLRNALSTQN 93
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
VPPN V+++L+LF+TFY+M+P ++ E GI+P ++ QIT+ A++ V EP FM + T
Sbjct: 94 VPPNQVVLALSLFLTFYIMAPYWGQANENGIRPYLDGQITQEQALENVVEPMRDFMFHQT 153
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL+LF++++ + N D + LIP+F+ISEL+ +F+IGF+I +PF++IDM
Sbjct: 154 RESDLALFVNLSDAERPN----SPDDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDM 209
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IVA+ +M+MGMMMLPP ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 210 IVASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 254
>gi|148976423|ref|ZP_01813129.1| flagellar biosynthesis protein P [Vibrionales bacterium SWAT-3]
gi|145964246|gb|EDK29502.1| flagellar biosynthesis protein P [Vibrionales bacterium SWAT-3]
Length = 309
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 88/224 (39%), Positives = 140/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 89 PAFTMTTNANGGEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 148
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +A+F+TF++MSP +++ E +QP +N QIT A P FM TR
Sbjct: 149 PSNQVIIGIAIFLTFFIMSPVINQVNEQAVQPYLNEQITARQAFDVAQGPIKSFMLKQTR 208
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++++ +++T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 209 IKDLETFVEISG-----SEVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 263
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 264 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307
>gi|238782830|ref|ZP_04626859.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC
43970]
gi|238716253|gb|EEQ08236.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC
43970]
Length = 257
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 98/226 (43%), Positives = 150/226 (66%), Gaps = 4/226 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
++ ++ AD + V+T + T L+ P +L+M+T F R IIV +LR +G
Sbjct: 34 AANADLMVARSADGENWSLPVQTLVLLTSLTFLPAILLMMTGFTRIIIVLGLLRNALGTP 93
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
S PPN V+++LALF+TFYVMSP ++ + QPL ++I+ TA++R +P VFM
Sbjct: 94 STPPNQVLLALALFLTFYVMSPVFNQIYKEAWQPLSEDKISMETALERGVQPLRVFMLEQ 153
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TRE DL+L+ MA + D + R+L+P+F+ SEL+ F+IGF + +PFLIID
Sbjct: 154 TRESDLALYARMAKEEN----FQSKDDVPLRVLLPAFVTSELKTGFQIGFTVFIPFLIID 209
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 210 LVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLMGSLAQSF 255
>gi|157161419|ref|YP_001458737.1| flagellar biosynthesis protein FliP [Escherichia coli HS]
gi|157067099|gb|ABV06354.1| flagellar biosynthetic protein FliP [Escherichia coli HS]
Length = 245
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 98/238 (41%), Positives = 151/238 (63%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ISEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVISELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|78224289|ref|YP_386036.1| flagellar biosynthesis protein FliP [Geobacter metallireducens
GS-15]
gi|78195544|gb|ABB33311.1| Flagellar transport protein FliP [Geobacter metallireducens GS-15]
Length = 250
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 103/225 (45%), Positives = 148/225 (65%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+L + + + +++ F + T+LS+AP L++M T F R +IV S LR +G
Sbjct: 29 PTLSIGVGKASKPGDVSTVLQIFFLMTVLSLAPGLMMMTTSFTRIVIVLSFLRNAIGTQQ 88
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN +I++L+LF+TF+VMSP + IQP QIT+ A +R P FM + T
Sbjct: 89 SPPNQIIVALSLFLTFFVMSPVWQQVNTQAIQPYRAAQITQEEAFRRAQVPVRKFMFSQT 148
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF++++ D I LIP+FMISELR +F+IGFLI +PFL+IDM
Sbjct: 149 REKDLALFINLSKLQRPR----NADDIPTLTLIPAFMISELRTAFQIGFLIFIPFLVIDM 204
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 205 VVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 249
>gi|292487982|ref|YP_003530859.1| flagellar biosynthetic protein FliP [Erwinia amylovora CFBP1430]
gi|292899202|ref|YP_003538571.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
gi|291199050|emb|CBJ46161.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
gi|291553406|emb|CBA20451.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora
CFBP1430]
Length = 245
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 93/241 (38%), Positives = 146/241 (60%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
+ V+A+ + V+T T L+ P +L+++T F R
Sbjct: 7 LLLPALFMLAPNVYAQLPGLISQPTANGGQSWSLPVQTLVFITSLTFLPAILLLMTSFTR 66
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIVF +LR +G S PPN V++ L+LF+TF++M P D+ QP ++I+ A
Sbjct: 67 IIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKIYTDAYQPFSEDKISMQEA 126
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
I + A+P FM TRE DL+LF +A++ I + + RIL+P+++ SEL+ +
Sbjct: 127 IDKGAQPLREFMLRQTREADLALFARLANTP----PIAGPEAVPMRILLPAYVTSELKTA 182
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +S
Sbjct: 183 FQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVSSLAQS 242
Query: 245 F 245
F
Sbjct: 243 F 243
>gi|293395593|ref|ZP_06639876.1| flagellar biosynthetic protein FliP [Serratia odorifera DSM 4582]
gi|291421912|gb|EFE95158.1| flagellar biosynthetic protein FliP [Serratia odorifera DSM 4582]
Length = 259
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 92/232 (39%), Positives = 145/232 (62%), Gaps = 4/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
A+ + T V+T + T LS P +L+M+T F R IIV +LR
Sbjct: 30 SPSAIAQLPGLISQPLAGGGQSWTLPVQTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLR 89
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+G + PPN V++ LALF+TF++M+P D+ + P ++I+ TAI + A+P
Sbjct: 90 NALGTPTAPPNQVMLGLALFLTFFIMAPVFDKVYQDAYLPFSQDKISMETAIDQGAQPLR 149
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +
Sbjct: 150 EFMLRQTREADLALYARLANLP----PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFI 205
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 206 PFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 257
>gi|296103568|ref|YP_003613714.1| flagellar biosynthesis protein FliP [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058027|gb|ADF62765.1| flagellar biosynthesis protein FliP [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 245
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 94/241 (39%), Positives = 152/241 (63%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
A + V+A+ + + V+T T L+ P +L+M+T F R
Sbjct: 7 LTLAGVGLFAPAVYAQLPGLVSTPLAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTR 66
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP ++I+ A
Sbjct: 67 IIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMQEA 126
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+++ A+P FM TRE DL+LF ++++ ++ + + RIL+P+++ SEL+ +
Sbjct: 127 LEKGAQPLREFMLRQTREADLALFARLSNTG----ELQGPEAVPMRILLPAYVTSELKTA 182
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +S
Sbjct: 183 FQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLAQS 242
Query: 245 F 245
F
Sbjct: 243 F 243
>gi|218689943|ref|YP_002398155.1| flagellar biosynthesis protein FliP [Escherichia coli ED1a]
gi|300818632|ref|ZP_07098840.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1]
gi|218427507|emb|CAR08402.2| flagellar biosynthesis protein [Escherichia coli ED1a]
gi|300528804|gb|EFK49866.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1]
Length = 245
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 97/238 (40%), Positives = 150/238 (63%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|194434965|ref|ZP_03067208.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 1012]
gi|194416800|gb|EDX32926.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 1012]
gi|320182735|gb|EFW57619.1| Flagellar biosynthesis protein FliP [Shigella boydii ATCC 9905]
gi|332095503|gb|EGJ00519.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 155-74]
Length = 245
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 97/238 (40%), Positives = 150/238 (63%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|188492613|ref|ZP_02999883.1| flagellar biosynthetic protein FliP [Escherichia coli 53638]
gi|188487812|gb|EDU62915.1| flagellar biosynthetic protein FliP [Escherichia coli 53638]
Length = 245
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 97/238 (40%), Positives = 150/238 (63%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVNAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|253996309|ref|YP_003048373.1| flagellar biosynthetic protein FliP [Methylotenera mobilis JLW8]
gi|253982988|gb|ACT47846.1| flagellar biosynthetic protein FliP [Methylotenera mobilis JLW8]
Length = 251
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 102/234 (43%), Positives = 149/234 (63%), Gaps = 6/234 (2%)
Query: 14 PELVFAKSSLHDVMNIP--ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
P V A +L V P T ++T + T L+ P +++M+T F R IIV S+
Sbjct: 21 PFSVLAADALPLVHASPSAGGGQDYTLSLQTLILLTSLTFLPAIVLMMTGFTRIIIVLSL 80
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LR +G SVPPN V+I LALF+TF+VMSP +D+ +PL NQI+ A+ + P
Sbjct: 81 LRQALGTQSVPPNQVMIGLALFLTFFVMSPVIDKIYVDAYKPLSENQISMQEAMDKGVAP 140
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
FM TRE DL+LF+ MA I D + ++L+P+F+ SEL+ +F+IGF I
Sbjct: 141 LKEFMLKQTREGDLALFVKMAEVEK----IESPDQVPLKVLVPAFVTSELKTAFQIGFAI 196
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW L++ +LV+SF
Sbjct: 197 FIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLILGSLVESF 250
>gi|291280091|ref|YP_003496926.1| flagellar transport protein FliP [Deferribacter desulfuricans SSM1]
gi|290754793|dbj|BAI81170.1| flagellar transport protein FliP [Deferribacter desulfuricans SSM1]
Length = 246
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 103/247 (41%), Positives = 156/247 (63%), Gaps = 9/247 (3%)
Query: 4 YCFFALFLVTPELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
Y F L LV A ++ ++ + + ++ + TIL++AP +L+M
Sbjct: 3 YICFIFLLFGQNLVLAADNIPLPAVRFGIDTAKNQNDVAITLQIIFLITILTLAPAILLM 62
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
VT F R IIVFS LR+ +G PPN V+I LALF+TF++MSP L+ + +QP M+ +
Sbjct: 63 VTSFTRLIIVFSFLRSALGTQQSPPNQVLIGLALFLTFFIMSPVLNDMYKNAVQPYMDGK 122
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+ T A+ +P F+ NTR+K+L F++++ T D I +LIP+F+
Sbjct: 123 LNFTQALVEAKKPLRKFLLKNTRKKELLTFIEISKVQRPKT----PDDIPDSVLIPAFIT 178
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +FEIGFL+ LPFL+ID +VA+++++MGMMMLPP ISLPFK++ FVL+DGW L+V
Sbjct: 179 SELQTAFEIGFLLFLPFLVIDFVVASVLLSMGMMMLPPVMISLPFKILLFVLVDGWGLIV 238
Query: 239 ENLVKSF 245
++VKSF
Sbjct: 239 GSMVKSF 245
>gi|238927449|ref|ZP_04659209.1| flagellar biosynthesis protein FliP [Selenomonas flueggei ATCC
43531]
gi|238884731|gb|EEQ48369.1| flagellar biosynthesis protein FliP [Selenomonas flueggei ATCC
43531]
Length = 256
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 92/232 (39%), Positives = 150/232 (64%), Gaps = 4/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
++ + + ++ + TI+S+AP +L+M T F R ++V LR
Sbjct: 28 ASAAPLIPTVSVGVGTSENPQDVATSMQILAVLTIMSLAPAILVMTTSFVRIVVVIGFLR 87
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+ +VPPN V+I+L+LF+TFY+M+P ++ E GIQP + QIT+ A++ + +P
Sbjct: 88 NALSTQNVPPNQVVIALSLFLTFYIMAPYWGQANENGIQPYLAGQITQEQALENIVDPMR 147
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM TRE DL+LF++++ + N + + LIP+F+ISEL+ +F++GF+I +
Sbjct: 148 EFMLRQTRESDLALFVNLSDAPRPNG----PEDVSTFTLIPAFIISELKTAFQLGFMIYI 203
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PF++IDMIVA+ +M+MGMMMLPP ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 204 PFIVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 255
>gi|77165627|ref|YP_344152.1| flagellar biosynthesis protein FliP [Nitrosococcus oceani ATCC
19707]
gi|76883941|gb|ABA58622.1| Flagellar transport protein FliP [Nitrosococcus oceani ATCC 19707]
Length = 262
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 95/233 (40%), Positives = 146/233 (62%), Gaps = 4/233 (1%)
Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
V T ++ G+ T+L++ P ++++T F R I+VFSIL
Sbjct: 30 AAGWAAPGVPALAVTADGNGEQTYTVTLQILGLMTVLTLLPAAVMVMTSFTRIIVVFSIL 89
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R +G+ P + ++I LALF+TF++MSP LD++ + G++P +I+ T A+ RV EPF
Sbjct: 90 RQALGLAQTPSSQILIGLALFLTFFIMSPVLDKAYQEGVKPYFQEEISVTDALARVREPF 149
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
FM TRE DL LF +++ + + + +L+P+F+ SEL+ +F+IGFL+
Sbjct: 150 HHFMIAQTRETDLKLFAEISGRE----AFESPEQVPFSLLVPAFITSELKTAFQIGFLLF 205
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIID++VA+++MAMGMMML P +SLPFK++ FVLIDGWSLL+ L SF
Sbjct: 206 IPFLIIDLVVASVLMAMGMMMLSPMLVSLPFKLLLFVLIDGWSLLMGTLASSF 258
>gi|91976169|ref|YP_568828.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
BisB5]
gi|91682625|gb|ABE38927.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
BisB5]
Length = 255
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 107/223 (47%), Positives = 159/223 (71%), Gaps = 4/223 (1%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
+ + ++ ++ + T+LSIAP +L+M+T F R ++V S+LRT +G + P
Sbjct: 33 VSINLGGAGGTGVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAP 92
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN VII+LALF+T +VM PTL +S + GI+PL+ N++ A+ R + P +FM+ N RE
Sbjct: 93 PNSVIIALALFLTGFVMGPTLQKSYDDGIKPLIANEMAVEDALVRASGPLRIFMQKNVRE 152
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
KDL LF+D++ T + + RIL+P+FMISEL+R+FEIGFL+ LPFLIID++V
Sbjct: 153 KDLKLFLDLSGEQPPAT----PEELSLRILMPAFMISELKRAFEIGFLLFLPFLIIDLVV 208
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+++M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ +LV+S+
Sbjct: 209 ASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 251
>gi|300113613|ref|YP_003760188.1| flagellar biosynthetic protein FliP [Nitrosococcus watsonii C-113]
gi|299539550|gb|ADJ27867.1| flagellar biosynthetic protein FliP [Nitrosococcus watsonii C-113]
Length = 262
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 95/234 (40%), Positives = 146/234 (62%), Gaps = 4/234 (1%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
V V T ++ G+ T+L++ P ++++T F R I+VFSI
Sbjct: 29 VATGWAAPGVPALAVTADGNGEQTYTVTLQILGLMTVLTLLPAAVMVMTSFTRIIVVFSI 88
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LR +G+ P + ++I LALF+TF++MSP LD++ + G++P +I+ A+ RV EP
Sbjct: 89 LRQALGLAQTPSSQILIGLALFLTFFIMSPVLDKAYQEGVKPYFQEEISVADALARVREP 148
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
F FM TRE DL LF +++ + + + +L+P+F+ SEL+ +F+IGFL+
Sbjct: 149 FHHFMIAQTRETDLKLFAEISGRE----AFESPEQVPFSLLVPAFITSELKTAFQIGFLL 204
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIID++VA+++MAMGMMML P +SLPFK++ FVLIDGWSLL+ L SF
Sbjct: 205 FIPFLIIDLVVASVLMAMGMMMLSPMLVSLPFKLLLFVLIDGWSLLMGTLASSF 258
>gi|254785480|ref|YP_003072909.1| flagellar biosynthesis protein FliP [Teredinibacter turnerae T7901]
gi|237683712|gb|ACR10976.1| flagellar biosynthetic protein FliP [Teredinibacter turnerae T7901]
Length = 283
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 91/218 (41%), Positives = 135/218 (61%), Gaps = 4/218 (1%)
Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
T ++ + T L+ P +L+M+T F R IIVF+ILR MG+ P N ++
Sbjct: 68 TNADGSQDYTVTLQILMLMTALTFLPAILMMMTSFTRIIIVFAILRQAMGLQQSPSNQIL 127
Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
I LALF+T ++M+P LD +QP MN Q++ A+ PF FM NTRE DL L
Sbjct: 128 IGLALFLTLFIMTPVLDEVNRTALQPYMNEQMSARQALDNAKLPFHAFMIANTRESDLDL 187
Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
F + + + + + +L+P+F+ SEL+ +F+IGF+I +PFL+ID++VA+++M
Sbjct: 188 FFRIGDIA----PVATPQDVPFTVLMPAFVTSELKTAFQIGFIIFIPFLVIDIVVASVLM 243
Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
AMGMMML P ISLPFK++ FVL+DGW L++ L SF
Sbjct: 244 AMGMMMLSPLIISLPFKIMLFVLVDGWGLIMGTLAASF 281
>gi|15802383|ref|NP_288409.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7
EDL933]
gi|15831941|ref|NP_310714.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
Sakai]
gi|16129895|ref|NP_416458.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
MG1655]
gi|89108780|ref|AP_002560.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
W3110]
gi|157156523|ref|YP_001463250.1| flagellar biosynthesis protein FliP [Escherichia coli E24377A]
gi|168751877|ref|ZP_02776899.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4113]
gi|168758262|ref|ZP_02783269.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4401]
gi|168764426|ref|ZP_02789433.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4501]
gi|168771555|ref|ZP_02796562.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4486]
gi|168777375|ref|ZP_02802382.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4196]
gi|168783345|ref|ZP_02808352.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4076]
gi|168790292|ref|ZP_02815299.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC869]
gi|168802295|ref|ZP_02827302.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC508]
gi|170081592|ref|YP_001730912.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
DH10B]
gi|170682430|ref|YP_001743297.1| flagellar biosynthesis protein FliP [Escherichia coli SMS-3-5]
gi|191168304|ref|ZP_03030097.1| flagellar biosynthetic protein FliP [Escherichia coli B7A]
gi|193066380|ref|ZP_03047428.1| flagellar biosynthetic protein FliP [Escherichia coli E22]
gi|193071148|ref|ZP_03052072.1| flagellar biosynthetic protein FliP [Escherichia coli E110019]
gi|194429937|ref|ZP_03062447.1| flagellar biosynthetic protein FliP [Escherichia coli B171]
gi|194439571|ref|ZP_03071644.1| flagellar biosynthetic protein FliP [Escherichia coli 101-1]
gi|195939254|ref|ZP_03084636.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
EC4024]
gi|208810650|ref|ZP_03252526.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4206]
gi|208816935|ref|ZP_03258055.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4045]
gi|208819585|ref|ZP_03259905.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4042]
gi|209400543|ref|YP_002271065.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4115]
gi|217328816|ref|ZP_03444897.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
TW14588]
gi|218554528|ref|YP_002387441.1| flagellar biosynthesis protein FliP [Escherichia coli IAI1]
gi|218695553|ref|YP_002403220.1| flagellar biosynthesis protein FliP [Escherichia coli 55989]
gi|237705907|ref|ZP_04536388.1| flagellar biosynthetic protein fliP [Escherichia sp. 3_2_53FAA]
gi|238901153|ref|YP_002926949.1| flagellar biosynthesis protein [Escherichia coli BW2952]
gi|253773103|ref|YP_003035934.1| flagellar biosynthesis protein FliP [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254793598|ref|YP_003078435.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
TW14359]
gi|256017859|ref|ZP_05431724.1| flagellar biosynthesis protein FliP [Shigella sp. D9]
gi|256022394|ref|ZP_05436259.1| flagellar biosynthesis protein FliP [Escherichia sp. 4_1_40B]
gi|260844347|ref|YP_003222125.1| flagellar biosynthesis protein FliP [Escherichia coli O103:H2 str.
12009]
gi|261227557|ref|ZP_05941838.1| flagellar biosynthesis protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254619|ref|ZP_05947152.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
FRIK966]
gi|291283125|ref|YP_003499943.1| Flagellar biosynthetic protein fliP precursor [Escherichia coli
O55:H7 str. CB9615]
gi|293415258|ref|ZP_06657901.1| flagellar biosynthetic protein FliP [Escherichia coli B185]
gi|293446328|ref|ZP_06662750.1| flagellar biosynthetic protein FliP [Escherichia coli B088]
gi|300920167|ref|ZP_07136617.1| flagellar biosynthetic protein FliP [Escherichia coli MS 115-1]
gi|300923889|ref|ZP_07139904.1| flagellar biosynthetic protein FliP [Escherichia coli MS 182-1]
gi|301029405|ref|ZP_07192499.1| flagellar biosynthetic protein FliP [Escherichia coli MS 196-1]
gi|307138615|ref|ZP_07497971.1| flagellar biosynthesis protein FliP [Escherichia coli H736]
gi|309795945|ref|ZP_07690358.1| flagellar biosynthetic protein FliP [Escherichia coli MS 145-7]
gi|312973835|ref|ZP_07788007.1| flagellar biosynthetic protein FliP [Escherichia coli 1827-70]
gi|331642569|ref|ZP_08343704.1| flagellar biosynthetic protein FliP [Escherichia coli H736]
gi|331677830|ref|ZP_08378505.1| flagellar biosynthetic protein FliP [Escherichia coli H591]
gi|332278885|ref|ZP_08391298.1| flagellar biosynthesis protein [Shigella sp. D9]
gi|81175289|sp|P0AC06|FLIP_ECO57 RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor
gi|81175290|sp|P0AC05|FLIP_ECOLI RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor
gi|12516055|gb|AAG56963.1|AE005417_5 flagellar biosynthesis [Escherichia coli O157:H7 str. EDL933]
gi|347243|gb|AAC36859.1| flagellar protein [Escherichia coli]
gi|1736614|dbj|BAA15773.1| flagellar biosynthesis protein [Escherichia coli str. K12 substr.
W3110]
gi|1788259|gb|AAC75015.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
MG1655]
gi|13362155|dbj|BAB36110.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
Sakai]
gi|157078553|gb|ABV18261.1| flagellar biosynthetic protein FliP [Escherichia coli E24377A]
gi|169889427|gb|ACB03134.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
DH10B]
gi|170520148|gb|ACB18326.1| flagellar biosynthetic protein FliP [Escherichia coli SMS-3-5]
gi|187767404|gb|EDU31248.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4196]
gi|188014148|gb|EDU52270.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4113]
gi|188999261|gb|EDU68247.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4076]
gi|189354902|gb|EDU73321.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4401]
gi|189359722|gb|EDU78141.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4486]
gi|189365562|gb|EDU83978.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4501]
gi|189370182|gb|EDU88598.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC869]
gi|189375715|gb|EDU94131.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC508]
gi|190901676|gb|EDV61432.1| flagellar biosynthetic protein FliP [Escherichia coli B7A]
gi|192925965|gb|EDV80611.1| flagellar biosynthetic protein FliP [Escherichia coli E22]
gi|192955543|gb|EDV86022.1| flagellar biosynthetic protein FliP [Escherichia coli E110019]
gi|194412026|gb|EDX28338.1| flagellar biosynthetic protein FliP [Escherichia coli B171]
gi|194421480|gb|EDX37494.1| flagellar biosynthetic protein FliP [Escherichia coli 101-1]
gi|208725166|gb|EDZ74873.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4206]
gi|208731278|gb|EDZ79967.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4045]
gi|208739708|gb|EDZ87390.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4042]
gi|209161943|gb|ACI39376.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
EC4115]
gi|209766788|gb|ACI81706.1| flagellar biosynthetic protein FliP [Escherichia coli]
gi|209766790|gb|ACI81707.1| flagellar biosynthetic protein FliP [Escherichia coli]
gi|209766792|gb|ACI81708.1| flagellar biosynthetic protein FliP [Escherichia coli]
gi|209766794|gb|ACI81709.1| flagellar biosynthetic protein FliP [Escherichia coli]
gi|209766796|gb|ACI81710.1| flagellar biosynthetic protein FliP [Escherichia coli]
gi|217318163|gb|EEC26590.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
TW14588]
gi|218352285|emb|CAU98042.1| flagellar biosynthesis protein [Escherichia coli 55989]
gi|218361296|emb|CAQ98880.1| flagellar biosynthesis protein [Escherichia coli IAI1]
gi|226900664|gb|EEH86923.1| flagellar biosynthetic protein fliP [Escherichia sp. 3_2_53FAA]
gi|238861098|gb|ACR63096.1| flagellar biosynthesis protein [Escherichia coli BW2952]
gi|253324147|gb|ACT28749.1| flagellar biosynthetic protein FliP [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254592998|gb|ACT72359.1| flagellar biosynthesis protein [Escherichia coli O157:H7 str.
TW14359]
gi|257759494|dbj|BAI30991.1| flagellar biosynthesis protein FliP [Escherichia coli O103:H2 str.
12009]
gi|260448939|gb|ACX39361.1| flagellar biosynthetic protein FliP [Escherichia coli DH1]
gi|284921856|emb|CBG34931.1| flagellar biosynthetic protein FliP [Escherichia coli 042]
gi|290762998|gb|ADD56959.1| Flagellar biosynthetic protein fliP precursor [Escherichia coli
O55:H7 str. CB9615]
gi|291323158|gb|EFE62586.1| flagellar biosynthetic protein FliP [Escherichia coli B088]
gi|291432906|gb|EFF05885.1| flagellar biosynthetic protein FliP [Escherichia coli B185]
gi|299877709|gb|EFI85920.1| flagellar biosynthetic protein FliP [Escherichia coli MS 196-1]
gi|300412824|gb|EFJ96134.1| flagellar biosynthetic protein FliP [Escherichia coli MS 115-1]
gi|300419852|gb|EFK03163.1| flagellar biosynthetic protein FliP [Escherichia coli MS 182-1]
gi|308120395|gb|EFO57657.1| flagellar biosynthetic protein FliP [Escherichia coli MS 145-7]
gi|310332430|gb|EFP99665.1| flagellar biosynthetic protein FliP [Escherichia coli 1827-70]
gi|315136585|dbj|BAJ43744.1| flagellar biosynthetic protein fliP precursor [Escherichia coli
DH1]
gi|315286656|gb|EFU46089.1| flagellar biosynthetic protein FliP [Escherichia coli MS 110-3]
gi|320191922|gb|EFW66569.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
EC1212]
gi|320198639|gb|EFW73239.1| Flagellar biosynthesis protein FliP [Escherichia coli EC4100B]
gi|320641796|gb|EFX11184.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
G5101]
gi|320647155|gb|EFX15988.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H- str.
493-89]
gi|320652439|gb|EFX20737.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H- str.
H 2687]
gi|320658041|gb|EFX25803.1| flagellar biosynthesis protein FliP [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320658613|gb|EFX26307.1| flagellar biosynthesis protein FliP [Escherichia coli O55:H7 str.
USDA 5905]
gi|320668511|gb|EFX35338.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
LSU-61]
gi|323158573|gb|EFZ44587.1| flagellar biosynthetic protein FliP [Escherichia coli E128010]
gi|323174672|gb|EFZ60292.1| flagellar biosynthetic protein FliP [Escherichia coli LT-68]
gi|323183932|gb|EFZ69319.1| flagellar biosynthetic protein FliP [Escherichia coli 1357]
gi|323948348|gb|EGB44335.1| flagellar biosynthetic protein FliP [Escherichia coli H120]
gi|323956344|gb|EGB52087.1| flagellar biosynthetic protein FliP [Escherichia coli H263]
gi|324018857|gb|EGB88076.1| flagellar biosynthetic protein FliP [Escherichia coli MS 117-3]
gi|326342359|gb|EGD66140.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
1044]
gi|326344863|gb|EGD68610.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
1125]
gi|331039367|gb|EGI11587.1| flagellar biosynthetic protein FliP [Escherichia coli H736]
gi|331074290|gb|EGI45610.1| flagellar biosynthetic protein FliP [Escherichia coli H591]
gi|332101237|gb|EGJ04583.1| flagellar biosynthesis protein [Shigella sp. D9]
Length = 245
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 97/238 (40%), Positives = 150/238 (63%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|296157442|ref|ZP_06840277.1| flagellar biosynthetic protein FliP [Burkholderia sp. Ch1-1]
gi|295892214|gb|EFG71997.1| flagellar biosynthetic protein FliP [Burkholderia sp. Ch1-1]
Length = 279
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 100/235 (42%), Positives = 150/235 (63%), Gaps = 7/235 (2%)
Query: 15 ELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
L FA+++ N P + + V+T + T+LS P +++M+T F R IIV S+
Sbjct: 49 TLSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSL 108
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LR +G + PPN V++ LALF+T +VMSP LD++ G +P + I TA+ R P
Sbjct: 109 LRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGSIPMETAVNRGLAP 168
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
F FM TRE DL+LF ++H + + + +L+PSF+ SEL+ F+IGF I
Sbjct: 169 FKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFQIGFTI 224
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 225 FIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 279
>gi|94264046|ref|ZP_01287846.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1]
gi|93455557|gb|EAT05744.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1]
Length = 252
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 96/235 (40%), Positives = 149/235 (63%), Gaps = 4/235 (1%)
Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
L + + + + + ++ + T+LS+AP +L+M+TCF R I+VFS
Sbjct: 21 LASAQEAIPLPTFSLGIEEATTPGQVSMTIQLLLVLTVLSMAPAILLMMTCFTRLIVVFS 80
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
LR +G +PPN V+I LALF+T ++M+P + + + P M+ +I A++ AE
Sbjct: 81 FLRNAIGTQQMPPNQVLIGLALFLTVFIMAPVFSQINQQAVGPYMDEEIGIEEALRTAAE 140
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM TREKDL LF+ ++ S D + +LIP+FMISEL+ +F IGF+
Sbjct: 141 PLREFMFKQTREKDLELFLGLSQSPRP----QNKDDVSTFVLIPAFMISELKTAFTIGFI 196
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ +PFL+IDM+VA+++++MGMMMLPP I+LPFK++ FVL+DGW L+V +LV+SF
Sbjct: 197 LFIPFLVIDMVVASVLLSMGMMMLPPIMIALPFKILLFVLVDGWYLIVGSLVRSF 251
>gi|325497690|gb|EGC95549.1| flagellar biosynthesis protein FliP [Escherichia fergusonii ECD227]
Length = 245
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 100/245 (40%), Positives = 155/245 (63%), Gaps = 5/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ L+LVTP A+ +P + V+T T L+ P +L+M+T
Sbjct: 4 LLTLIPAMLWLVTP-CALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMT 62
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 63 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKIS 122
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+++ A+P FM TRE DL+LF +A++ I + + RIL+P+++ SE
Sbjct: 123 MQEALEKGAQPLREFMLRQTREADLALFARLANTG----PIQGPEAVPMRILLPAYVTSE 178
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +
Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238
Query: 241 LVKSF 245
L +SF
Sbjct: 239 LAQSF 243
>gi|304438440|ref|ZP_07398380.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304368523|gb|EFM22208.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 249
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 153/245 (62%), Gaps = 7/245 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
A L+ A + V + + ++ + T++S+AP + +M T
Sbjct: 8 LGAAAFLLLGVGQASAAPLIPTVNVGVGTSNNPQDVATSMQVLAVLTVMSLAPAIFVMTT 67
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R ++V LR + +VPPN V+I+L+LF+TFY+M+P ++ E GIQP + QIT
Sbjct: 68 SFVRIVVVIGFLRNALSTQNVPPNQVVIALSLFLTFYIMAPYWGQANENGIQPYLEGQIT 127
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A++ + +P FM TRE DL+LF++++ + + + + LIP+F+ISE
Sbjct: 128 QEQALENIVDPMREFMLRQTRESDLALFVNLSDAPRPDG----PEDVSTFTLIPAFIISE 183
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF+I +PF++IDMIVA+ +M+MGMMMLPP ISLPFK++ FV++DGW LL+++
Sbjct: 184 LKTAFQIGFMIYIPFIVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQS 243
Query: 241 LVKSF 245
L+ SF
Sbjct: 244 LIMSF 248
>gi|33601555|ref|NP_889115.1| flagellar biosynthesis protein FliP [Bordetella bronchiseptica
RB50]
gi|33575991|emb|CAE33071.1| flagellar biosynthetic protein FliP [Bordetella bronchiseptica
RB50]
Length = 263
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 100/236 (42%), Positives = 146/236 (61%), Gaps = 6/236 (2%)
Query: 12 VTPELVFAKSSLHDVMNIPA--DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
+ P A+++L + P + ++T + T LS P L+M+T F R IIV
Sbjct: 30 LWPSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVL 89
Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
+LR+ MG PPN V+I LALF+TFY MSP D+ QPL I TA++R
Sbjct: 90 GLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAG 149
Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
P FM + TRE DL+LF ++A+ + + RILIP+F+ SEL+ +F+IGF
Sbjct: 150 SPLHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGF 205
Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF
Sbjct: 206 TIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 261
>gi|15964421|ref|NP_384774.1| flagellar biosynthesis protein FliP [Sinorhizobium meliloti 1021]
gi|307311563|ref|ZP_07591204.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti BL225C]
gi|17380428|sp|P37827|FLIP_RHIME RecName: Full=Flagellar biosynthetic protein fliP
gi|15073598|emb|CAC45240.1| Flagellar biosynthetic transmembrane protein [Sinorhizobium
meliloti 1021]
gi|306899580|gb|EFN30209.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti BL225C]
Length = 245
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 141/247 (57%), Positives = 195/247 (78%), Gaps = 3/247 (1%)
Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
M+R+ F + + A+S D++N P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1 MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I
Sbjct: 61 TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
+ET A+QR++EPF FM NTR+KDL LF+D+A + + ++ ++ R ++P+FMIS
Sbjct: 121 SETDAMQRMSEPFREFMVANTRDKDLQLFIDIARE--KGQTVVVDEKVDLRAVVPAFMIS 178
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV
Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238
Query: 240 NLVKSFI 246
+LV+SFI
Sbjct: 239 SLVRSFI 245
>gi|313200553|ref|YP_004039211.1| flagellar biosynthetic protein flip [Methylovorus sp. MP688]
gi|312439869|gb|ADQ83975.1| flagellar biosynthetic protein FliP [Methylovorus sp. MP688]
Length = 270
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 100/239 (41%), Positives = 152/239 (63%), Gaps = 6/239 (2%)
Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSI--STWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
L P L A++++ + P T ++T + T LS P +L+M+T F R I
Sbjct: 35 ALLAIPALAHAEAAMPLINAAPGSGGSQNYTLSLQTLLLLTSLSFLPAVLLMMTGFTRII 94
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IV S+LR +G + PPN V++ LALF+TF+VMSP +D+ QPL N+IT A++
Sbjct: 95 IVLSLLRQALGTPTSPPNQVLVGLALFLTFFVMSPVMDKIYVEAYQPLSENKITLQEALE 154
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
+ A P FM TRE D++LFM ++ S + + R+L+P+FM SEL+ +F+
Sbjct: 155 KGAAPLKTFMLKQTREADIALFMRISRS----DAVDGPEQTPLRVLVPAFMTSELKTAFQ 210
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGF I +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW L++ +L +SF
Sbjct: 211 IGFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLVLGSLAESF 269
>gi|34498582|ref|NP_902797.1| flagellar biosynthesis protein FliP [Chromobacterium violaceum ATCC
12472]
gi|34104436|gb|AAQ60794.1| probable flagellar biosynthetic protein fliP [Chromobacterium
violaceum ATCC 12472]
Length = 250
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 94/247 (38%), Positives = 152/247 (61%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIP--ADLSISTWIVRTFGIFTILSIAPILLIM 58
++ L++P L A + L + + P + ++ T L+ P +++M
Sbjct: 5 IVIALLSGGALLSPLLADAAAGLPLMTSTPAAGGGQNYSLSLQMLLFMTALTFIPAMMLM 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R +IV S+LR +G PPN VI+ LALF+T +VM PT D+ P +++
Sbjct: 65 MTAFTRIVIVLSLLRQALGTTQSPPNQVIVGLALFLTLFVMGPTFDQVYAKAWVPFSDDK 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
I+ A+ ++P FM TREKDL+ F++++ S + + + LIP+F +
Sbjct: 125 ISFNQALDEGSKPMKAFMLRQTREKDLAFFIEISQSPKP----QSKEEVSMKTLIPAFAV 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF+I +PF+IID++VA+I+MAMGMMM+ P +ISLPFK++ FVL+DGW+LL+
Sbjct: 181 SELKTAFQIGFMIFIPFMIIDLVVASILMAMGMMMVSPVTISLPFKMMLFVLVDGWTLLM 240
Query: 239 ENLVKSF 245
+LV+SF
Sbjct: 241 GSLVQSF 247
>gi|90423026|ref|YP_531396.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
BisB18]
gi|90105040|gb|ABD87077.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
BisB18]
Length = 254
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 114/242 (47%), Positives = 163/242 (67%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ A+ ++ P ++ ++ + T+LSIAP +LIM+T F
Sbjct: 14 LLTLIAAGSLADPALAQDISINLGGGPGGGGVTERAIQLIALLTVLSIAPSILIMMTSFT 73
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R ++V S+LRT +G + PPN VI++LALF+T +VM P L +S + GI+PL+ NQIT
Sbjct: 74 RIVVVLSLLRTALGTATAPPNSVILALALFLTAFVMGPVLQKSYDDGIKPLIANQITVEE 133
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A+QR P FM+ N REKDL LFMD+++ T D + RIL+P+FMISEL+R
Sbjct: 134 ALQRAVVPLRGFMQKNVREKDLKLFMDLSNEPIPAT----PDDLSLRILVPAFMISELKR 189
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ +LV+
Sbjct: 190 AFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQ 249
Query: 244 SF 245
S+
Sbjct: 250 SY 251
>gi|238788324|ref|ZP_04632118.1| Flagellar biosynthetic protein fliP [Yersinia frederiksenii ATCC
33641]
gi|238723570|gb|EEQ15216.1| Flagellar biosynthetic protein fliP [Yersinia frederiksenii ATCC
33641]
Length = 243
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 147/245 (60%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M + L L+ A+ + + V+T T LS P L+M+T
Sbjct: 1 MNKTPLLLLILLCSPAALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +LR +G S PPN V++ LALF+TF++MSP D+ + P ++I+
Sbjct: 61 SFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKIS 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ + ++P FM TRE DL+L+ +A+ + + + RIL+P+++ SE
Sbjct: 121 MEVAMDKGSQPLREFMLRQTRESDLALYARLANIP----ALEGPEVVPMRILLPAYVTSE 176
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +
Sbjct: 177 LKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGS 236
Query: 241 LVKSF 245
L +SF
Sbjct: 237 LAQSF 241
>gi|170748101|ref|YP_001754361.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans
JCM 2831]
gi|170654623|gb|ACB23678.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans
JCM 2831]
Length = 245
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 129/246 (52%), Positives = 170/246 (69%), Gaps = 3/246 (1%)
Query: 1 MIRYCFFAL-FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
M+R F A L+ A+S D + P + S+S +++ + T+LSIAP LL+MV
Sbjct: 1 MLRRVFLASPLLLVATAATAQSFSLDQVLPPGNGSVSGRMIQLIALMTVLSIAPGLLVMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F RF++ S LR+G+G+ S P NLV+ISL+LFMTFYVM PT DR+ + G++PL N+I
Sbjct: 61 TSFTRFVVALSFLRSGLGLQSAPANLVLISLSLFMTFYVMGPTFDRAWQDGVRPLTENRI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
TE A +V PF FM + R KDL F ++A S+ + RILIP+FMIS
Sbjct: 121 TEEEAFAKVTAPFRDFMLAHVRPKDLDTFAEIAASNLSKAP--DGGRTDLRILIPAFMIS 178
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
ELRR FEIGFLI LPFL+IDM++A +VM+MGMMMLPPT ISLPFK++FFVLIDGW++LV
Sbjct: 179 ELRRGFEIGFLIALPFLVIDMVIAVLVMSMGMMMLPPTVISLPFKILFFVLIDGWNMLVS 238
Query: 240 NLVKSF 245
LVKS+
Sbjct: 239 GLVKSY 244
>gi|146312185|ref|YP_001177259.1| flagellar biosynthesis protein FliP [Enterobacter sp. 638]
gi|145319061|gb|ABP61208.1| flagellar biosynthetic protein FliP [Enterobacter sp. 638]
Length = 245
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 96/241 (39%), Positives = 151/241 (62%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
A ++ V+A+ + + V+T T L+ P +L+M+T F R
Sbjct: 7 LTLAGLVLFAPAVYAQLPGLISTPMAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTR 66
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP ++I+ A
Sbjct: 67 IIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYADAYQPFSEDKISMQVA 126
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+++ A+P FM TRE DL+LF +A+ I + + RIL+P+++ SEL+ +
Sbjct: 127 LEKGAQPLREFMLRQTREADLALFARLAN----EGPIQGPEAVPMRILLPAYVTSELKTA 182
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +S
Sbjct: 183 FQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVGSLAQS 242
Query: 245 F 245
F
Sbjct: 243 F 243
>gi|84388121|ref|ZP_00991017.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
gi|84377188|gb|EAP94058.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
Length = 309
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 87/224 (38%), Positives = 139/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 89 PAFTMTTNANGGEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 148
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +A+F+TF++MSP +++ E +QP +N QI+ A P FM TR
Sbjct: 149 PSNQVIIGIAIFLTFFIMSPVINQVNEQAVQPYLNEQISARQAFDVAQGPIKSFMLKQTR 208
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++++ ++T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 209 IKDLETFVEISG-----AEVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 263
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 264 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307
>gi|462610|sp|P34200|FLIP_PECCC RecName: Full=Flagellar biosynthetic protein fliP; AltName:
Full=Flagellar biosynthetic protein mopC
gi|296055|emb|CAA51476.1| mopC [Pectobacterium carotovorum]
Length = 258
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 103/243 (42%), Positives = 151/243 (62%), Gaps = 4/243 (1%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
RY L V+A+ +P T V+T + T L+ P L+M+T F
Sbjct: 18 RYGLAIGLLFMAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVLLTSLTFLPAALLMMTSF 77
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R IIV S+LR +G + PPN V++ L LF+TF+VMSP L+R + P +QI+
Sbjct: 78 TRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISME 137
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
AI+R AEP FM TRE DL+LF +A +I + + R+L+P+F+ SEL+
Sbjct: 138 VAIERGAEPVREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSELK 193
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L
Sbjct: 194 TAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLA 253
Query: 243 KSF 245
+SF
Sbjct: 254 QSF 256
>gi|95929864|ref|ZP_01312605.1| flagellar biosynthetic protein FliP [Desulfuromonas acetoxidans DSM
684]
gi|95134160|gb|EAT15818.1| flagellar biosynthetic protein FliP [Desulfuromonas acetoxidans DSM
684]
Length = 246
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 103/247 (41%), Positives = 156/247 (63%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMN--IPADLSISTWIVRTFGIFTILSIAPILLIM 58
M+R F ++ P +A + A + + V+ + TILS+AP +L+M
Sbjct: 3 MLRLLFALGLILLPATGWAIDLPTITLGVENAATPNEVSMAVQILLVLTILSVAPAILLM 62
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
T F R ++V S +R MG +PPN VI+ L+LF+TF++M+P E +QP ++ +
Sbjct: 63 TTAFVRVVVVLSFIRQAMGTQQMPPNQVIVGLSLFLTFFIMAPVYSVVNERAVQPYLSGE 122
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
I + A+ P FM + TREKDL+L +D+A + +T D + LIP+FM+
Sbjct: 123 IDQAQALTEAVNPVRDFMYSQTREKDLALLVDIAGNDRPDT----IDDVPTTTLIPAFML 178
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL R+F+IGF++ +PFL+IDM+VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L+V
Sbjct: 179 SELNRAFQIGFMVYVPFLVIDMVVASVLMSMGMMMLPPPIISLPFKLLLFVLVDGWGLVV 238
Query: 239 ENLVKSF 245
+LVKSF
Sbjct: 239 GSLVKSF 245
>gi|238785487|ref|ZP_04629470.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC
43970]
gi|238713589|gb|EEQ05618.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC
43970]
Length = 249
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 95/243 (39%), Positives = 148/243 (60%), Gaps = 4/243 (1%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
+ L L+ VFA+ + + V+T T LS P L+M+T F
Sbjct: 9 KITLLLLTLLCSPAVFAQLPGLISQPLANGGQSWSLPVQTLVFITALSFLPAALLMMTSF 68
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R IIV +LR +G S PPN V++ LALF+TF++MSP D+ + P ++I+
Sbjct: 69 TRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISME 128
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
A+ + ++P FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+
Sbjct: 129 VAMDKGSQPLREFMLRQTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELK 184
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+F+IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L
Sbjct: 185 TAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLA 244
Query: 243 KSF 245
+SF
Sbjct: 245 QSF 247
>gi|312173310|emb|CBX81565.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora
ATCC BAA-2158]
Length = 247
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 95/244 (38%), Positives = 151/244 (61%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + + P + ++ + P T V+T + + L+ P +L+M+T
Sbjct: 6 VLRTLLLIAGMLPAVGALAANSDITLASPQGNGGWTLPVQTLVLLSSLTFLPAILLMMTG 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIV ++R +G + PPN V++ LALF+TFYVMSP ++ E QPL ++IT
Sbjct: 66 FTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMSPVFNQIYEQAWQPLQEDKITM 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+++ +P FM + TRE DL++F MA + + + IL+P+F+ SEL
Sbjct: 126 EVALEQGVKPLRAFMLDQTRENDLAMFAQMAK----AGEFKGPEEVPLGILVPAFVTSEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +L
Sbjct: 182 KTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGSL 241
Query: 242 VKSF 245
+SF
Sbjct: 242 AQSF 245
>gi|227820864|ref|YP_002824834.1| flagellar biosynthesis protein FliP [Sinorhizobium fredii NGR234]
gi|227339863|gb|ACP24081.1| flagellar biosynthetic protein FliP [Sinorhizobium fredii NGR234]
Length = 245
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 141/246 (57%), Positives = 192/246 (78%), Gaps = 3/246 (1%)
Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
M+R F + + A+S D++N P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1 MLRIAAFIVAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I
Sbjct: 61 TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWREGIDPLLKNEI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
+ET A+ RV+EPF FM NTR+KDL LF+D+A + + +D ++ R ++P+FMIS
Sbjct: 121 SETEALPRVSEPFREFMLANTRDKDLQLFIDIARE--KGQTVVVDDKVDLRAVVPAFMIS 178
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
E+RR FEIGFLI+LPFL+ID+IV+TI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV
Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVSTITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238
Query: 240 NLVKSF 245
+LV+SF
Sbjct: 239 SLVRSF 244
>gi|215487148|ref|YP_002329579.1| flagellar biosynthesis protein FliP [Escherichia coli O127:H6 str.
E2348/69]
gi|215265220|emb|CAS09610.1| flagellar biosynthesis protein FliP [Escherichia coli O127:H6 str.
E2348/69]
Length = 245
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 96/238 (40%), Positives = 150/238 (63%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL +F +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGVFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|156933432|ref|YP_001437348.1| flagellar biosynthesis protein FliP [Cronobacter sakazakii ATCC
BAA-894]
gi|156531686|gb|ABU76512.1| hypothetical protein ESA_01250 [Cronobacter sakazakii ATCC BAA-894]
Length = 245
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 97/226 (42%), Positives = 145/226 (64%), Gaps = 4/226 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
+ I + V+T T L+ P +L+M+T F R IIVF +LR +G
Sbjct: 22 QLPGLVSQPISGGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTP 81
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
S PPN V++ LALF+TF++MSP +D+ QP N+I+ A+ R A+P FM
Sbjct: 82 SAPPNQVLLGLALFLTFFIMSPVIDKIYSDAYQPFNENKISMEVALDRGAQPLREFMLRQ 141
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TRE DL+LF +A++ I + + RIL+P+++ SEL+ +F+IGF + +PFLIID
Sbjct: 142 TREADLALFAKLANT----QPIQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIID 197
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++VA+++MA+GMMM+PP SI+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 198 LVVASVLMALGMMMVPPASIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|254258156|ref|ZP_04949210.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
1710a]
gi|254298637|ref|ZP_04966088.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
406e]
gi|76580117|gb|ABA49592.1| flagellar biosynthetic protein [Burkholderia pseudomallei 1710b]
gi|157808588|gb|EDO85758.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
406e]
gi|254216845|gb|EET06229.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
1710a]
Length = 276
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 95/241 (39%), Positives = 141/241 (58%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A + + + V+T + T+LS P +L+M+T F R
Sbjct: 39 ILIGLAPALACAQAAGLPAFNSAPGSNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 98
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G S PPN V++ LALF+T +VMSP LDR+ +P + A
Sbjct: 99 IIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQA 158
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+QR PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+
Sbjct: 159 VQRGTAPFKAFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTG 214
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 215 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 274
Query: 245 F 245
F
Sbjct: 275 F 275
>gi|319944172|ref|ZP_08018448.1| flagellar biosynthetic protein FliP [Lautropia mirabilis ATCC
51599]
gi|319742467|gb|EFV94878.1| flagellar biosynthetic protein FliP [Lautropia mirabilis ATCC
51599]
Length = 245
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 94/242 (38%), Positives = 151/242 (62%), Gaps = 1/242 (0%)
Query: 5 CFFALFLVTPELVFAKSSL-HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ AL P V+A+++L + + V+T F+ LS P +L+++T F
Sbjct: 2 LWGALLAGAPLDVWAQATLSLQSTAAADGGTTWSVPVQTLLFFSALSFIPAVLLLMTSFT 61
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R IIV S+LR +G+ + PPN V++ ++LF+T ++MSPTLDR QPL +I T
Sbjct: 62 RIIIVLSLLRQALGLQASPPNQVLVGISLFLTAFIMSPTLDRIYTEAYQPLAEKRIDFET 121
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A+Q+ + P FM TR DL LF +A + + ++ ++P+F+ISEL+
Sbjct: 122 ALQKGSVPLRDFMLKQTRASDLELFARLARVKAPDDKPLSAQDMPFKAIVPAFVISELKT 181
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF+I +PF++ID+I A+++M++GMMM+ P ++LPFK++ FVL DGW+LLV +LV
Sbjct: 182 AFQIGFMIFIPFILIDLICASVLMSLGMMMVSPVLVALPFKLVLFVLADGWNLLVGSLVA 241
Query: 244 SF 245
SF
Sbjct: 242 SF 243
>gi|331683500|ref|ZP_08384101.1| flagellar biosynthetic protein FliP [Escherichia coli H299]
gi|331079715|gb|EGI50912.1| flagellar biosynthetic protein FliP [Escherichia coli H299]
Length = 245
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 96/238 (40%), Positives = 149/238 (62%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GVQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|307945658|ref|ZP_07660994.1| flagellar biosynthetic protein FliP [Roseibium sp. TrichSKD4]
gi|307771531|gb|EFO30756.1| flagellar biosynthetic protein FliP [Roseibium sp. TrichSKD4]
Length = 231
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 106/230 (46%), Positives = 167/230 (72%), Gaps = 4/230 (1%)
Query: 16 LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
++A ++ + D +++ V+ + T+LS+AP +LIMVT F R ++V S+LR+
Sbjct: 3 PIWAANAQEITIGFGDDTTLTERAVQLLALLTVLSLAPSILIMVTSFTRIVVVLSLLRSA 62
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
+G+ + PPN+V+ISLA+F+T ++M+PTL ++ G+QPL+++ I A +R ++PF F
Sbjct: 63 IGLQTAPPNMVMISLAMFLTAFIMAPTLQKAYNDGVQPLIDDDIEFNQAFERASDPFRQF 122
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
M + REKDL+LF +++ +T + +E L+P+FMISEL+R+FEIGFL+ LPF
Sbjct: 123 MLSQVREKDLALFQELSGRPAPDT----PEELELSTLVPAFMISELKRAFEIGFLLYLPF 178
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LIID+++A+++M+MGMMMLPP ISLPFK+IFFVL+DGW+L+ +LVKSF
Sbjct: 179 LIIDLVIASVLMSMGMMMLPPVVISLPFKLIFFVLVDGWNLVAGSLVKSF 228
>gi|328543163|ref|YP_004303272.1| flagellar transport protein FliP [polymorphum gilvum SL003B-26A1]
gi|326412909|gb|ADZ69972.1| Flagellar transport protein FliP [Polymorphum gilvum SL003B-26A1]
Length = 245
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 106/227 (46%), Positives = 159/227 (70%), Gaps = 4/227 (1%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
+ + S++ V+ + T+LS+AP +L+MVT F R ++V S+LR+ +G+
Sbjct: 20 PAGAQDLTIGFGEGASLTERAVQLVALLTVLSLAPSILVMVTSFTRIVVVLSLLRSAIGL 79
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
+ PPN+V++SLALF+T ++M+PTL + E G+QPL+ I A +R + PF FM +
Sbjct: 80 QTAPPNMVMVSLALFLTAFIMAPTLQVAYEEGVQPLVEGTIEFDQAFERASTPFHAFMLS 139
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
REKDL+LF +++ T + + ++ LIP+FMISELRR+FEIGFL+ LPFLII
Sbjct: 140 QVREKDLALFQELSGQEAPETQ----EDLSFQTLIPAFMISELRRAFEIGFLLYLPFLII 195
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
D++VA+++M+MGMMMLPP ISLPFK+IFFVL+DGW+L+ +LV+SF
Sbjct: 196 DLVVASVLMSMGMMMLPPVVISLPFKLIFFVLVDGWNLVAGSLVRSF 242
>gi|50120649|ref|YP_049816.1| flagellar biosynthesis protein FliP [Pectobacterium atrosepticum
SCRI1043]
gi|49611175|emb|CAG74621.1| flagellar biosynthetic protein [Pectobacterium atrosepticum
SCRI1043]
Length = 258
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 103/244 (42%), Positives = 151/244 (61%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+RY L V+A+ +P T V+T T L+ P L+M+T
Sbjct: 17 LRYGLAIGLLFMAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVFLTSLTFLPAALLMMTS 76
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIV S+LR +G + PPN V++ L LF+TF+VMSP L+R + P +QI+
Sbjct: 77 FTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISM 136
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
AI+R AEP FM TRE DL+LF +A +I + + R+L+P+F+ SEL
Sbjct: 137 EVAIERGAEPLREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSEL 192
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L
Sbjct: 193 KTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL 252
Query: 242 VKSF 245
+SF
Sbjct: 253 AQSF 256
>gi|260438790|ref|ZP_05792606.1| flagellar biosynthetic protein FliP [Butyrivibrio crossotus DSM
2876]
gi|292808779|gb|EFF67984.1| flagellar biosynthetic protein FliP [Butyrivibrio crossotus DSM
2876]
Length = 272
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 96/225 (42%), Positives = 148/225 (65%), Gaps = 2/225 (0%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SS + + S +++ + T++++AP +LIM+T F R IIV R+ +G +
Sbjct: 49 SSNLTIGISAGNGSDLASVLQILLVLTVIALAPSILIMLTSFTRIIIVLHFTRSAIGTQT 108
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN V++ LALF+TF++M+PT + I+PL N+IT A +P FM T
Sbjct: 109 APPNQVLVGLALFLTFFIMAPTFKTVYDDAIKPLSKNEITSEEAYDVGIKPIRQFMLEQT 168
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
KD+ +F+D+A + + D I ++LIPSF++SELR +F IGFLI +PF+IIDM
Sbjct: 169 NTKDIRMFIDIAKVDT--STLKDYDDIPIQVLIPSFIVSELRIAFIIGFLIYIPFIIIDM 226
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+V++ +M+MGMMMLPPT+ISLPFK++ F++ DGW+L++ NLVK+F
Sbjct: 227 VVSSALMSMGMMMLPPTTISLPFKILLFIMADGWNLVIGNLVKTF 271
>gi|325525522|gb|EGD03321.1| flagellar biosynthesis protein FliP [Burkholderia sp. TJI49]
Length = 229
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 95/228 (41%), Positives = 145/228 (63%), Gaps = 4/228 (1%)
Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
A + P + + V+T + T+LS P +++M+T F R IIV S+LR +G
Sbjct: 5 AAGLPAFNASPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALG 64
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
+ PPN V++ LALF+TF+VMSP LDR+ G +P + + A+QR PF FM
Sbjct: 65 TATTPPNQVLVGLALFLTFFVMSPVLDRAYTDGYKPFSDGSVPMEQAVQRGLAPFKGFML 124
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
TRE DL+LF ++ + + + +L+P+F+ SEL+ F+IGF I +PFLI
Sbjct: 125 KQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLI 180
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 181 IDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 228
>gi|259907616|ref|YP_002647972.1| Flagellar biosynthetic protein FliP [Erwinia pyrifoliae Ep1/96]
gi|224963238|emb|CAX54722.1| Flagellar biosynthetic protein FliP [Erwinia pyrifoliae Ep1/96]
gi|283477458|emb|CAY73374.1| Flagellar biosynthetic protein FliP precursor [Erwinia pyrifoliae
DSM 12163]
Length = 247
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 95/245 (38%), Positives = 153/245 (62%), Gaps = 5/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++R +++ A +S + P T V+T + + L+ P +L+M+T
Sbjct: 6 LLRALLLVAGMLSAVGALAANS-DITLASPQGNGGWTLPVQTLVLLSSLTFLPAVLLMMT 64
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV ++R +G + PPN V++ LALF+TFYVMSP ++ + QPL ++IT
Sbjct: 65 GFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMSPVFNQIYQQAWQPLQEDKIT 124
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+++ +P FM + TRE DL++F +A + + + IL+P+F+ SE
Sbjct: 125 MEVALEQGVKPLRAFMLDQTRENDLAMFAQIAK----AGEFKGPEEVPLGILVPAFVTSE 180
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +
Sbjct: 181 LKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGS 240
Query: 241 LVKSF 245
L +SF
Sbjct: 241 LAQSF 245
>gi|124265768|ref|YP_001019772.1| flagellar biosynthesis protein FliP [Methylibium petroleiphilum
PM1]
gi|124258543|gb|ABM93537.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
Length = 254
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 99/244 (40%), Positives = 149/244 (61%), Gaps = 9/244 (3%)
Query: 7 FALFLVTPELVFAKSS-----LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
++ P + A+++ L ++ A + + ++T FT LS P +L+M+T
Sbjct: 13 VSVLSAFPAVALAQAAGGNANLPLIVGQGAGGTSYSVPIQTLLFFTALSFLPAVLLMMTG 72
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R +IV S+LR +G SVPPN V+I L+LF+T +VM PT+D+ +P NQI
Sbjct: 73 FTRIVIVLSLLRQALGTQSVPPNQVLIGLSLFLTLFVMGPTIDKVYSEAYKPFAANQIAF 132
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ R P FM TR+ DL LF +A K + +R+L+P+F+ SEL
Sbjct: 133 DEALARGEAPMRSFMLKQTRQSDLMLFARLAKL----DPAVKGEDAPFRVLVPAFVTSEL 188
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFLI +PFLIIDMIVA+++M++GMMML P ++LPFK++ FVL DGW+LL+ +L
Sbjct: 189 KSAFQIGFLIFIPFLIIDMIVASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGSL 248
Query: 242 VKSF 245
SF
Sbjct: 249 AASF 252
>gi|238758099|ref|ZP_04619279.1| Flagellar biosynthetic protein fliP [Yersinia aldovae ATCC 35236]
gi|238703637|gb|EEP96174.1| Flagellar biosynthetic protein fliP [Yersinia aldovae ATCC 35236]
Length = 249
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 92/233 (39%), Positives = 141/233 (60%), Gaps = 4/233 (1%)
Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
A+ + + V+T T LS P L+M+T F R IIV +L
Sbjct: 19 CSPAALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLL 78
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R +G S PPN V++ L LF+TF++MSP D+ + P ++I+ AI + A+P
Sbjct: 79 RNALGTPSAPPNQVMLGLTLFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAIDKGAQPL 138
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF +
Sbjct: 139 REFMLRQTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELKTAFQIGFTVF 194
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 195 IPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 247
>gi|224438396|ref|ZP_03659323.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG
18818]
Length = 274
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 103/225 (45%), Positives = 149/225 (66%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
S+ + P + + + I T+L IAP L++++T F R +IVF+ LRT +G
Sbjct: 53 PSVDLSLTAPQEPTELVATLNIVLIITLLVIAPSLVLVMTSFTRIVIVFAFLRTALGTQQ 112
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PP V++SLAL +TF++M P +S E+GI+P QI+ A +R PF FM NT
Sbjct: 113 SPPTQVLVSLALVLTFFIMEPVATKSYEVGIKPYTEKQISYDEAFERAIVPFKDFMIKNT 172
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +LIP+FMISEL+ +F IGFL+ LPFL+IDM
Sbjct: 173 REKDLALFFRIRNLENPQT----VDDVPLTVLIPAFMISELKTAFWIGFLLYLPFLVIDM 228
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++++++MAMGMMMLPP ISLPFK++ FVL+DGW+LL+ NLV+ F
Sbjct: 229 VISSVLMAMGMMMLPPVMISLPFKILVFVLVDGWNLLIGNLVQGF 273
>gi|239817147|ref|YP_002946057.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110]
gi|239803724|gb|ACS20791.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110]
Length = 253
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 96/224 (42%), Positives = 142/224 (63%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
P + V+T + T LS P LL+ +T F R +IV +LRT +G S
Sbjct: 32 PGLTSTPGPGGSQTWSLSVQTLVMLTSLSFLPALLLSMTSFTRILIVLGLLRTAIGTQSS 91
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN +++ L+LF+TF+VM+P D+ + +P N+IT A+++ PF FM TR
Sbjct: 92 PPNQILVGLSLFLTFFVMAPVFDKVHDEAYKPFSENKITAEKALEKGIAPFKSFMLKQTR 151
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
E DL+LF +A D+ + + RIL+PSF+ISEL+ +F+IGF I +PFLIID++
Sbjct: 152 ENDLALFARLAKIP----DMQGPEEVPLRILLPSFVISELKTAFQIGFTIFIPFLIIDLV 207
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++M+MGMMM+PP SI+LPFK++ FV+ DGW LL+ L +SF
Sbjct: 208 VASVLMSMGMMMVPPASIALPFKLMLFVMADGWQLLIGALAQSF 251
>gi|46200839|ref|ZP_00056386.2| COG1338: Flagellar biosynthesis pathway, component FliP
[Magnetospirillum magnetotacticum MS-1]
Length = 241
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 109/245 (44%), Positives = 164/245 (66%), Gaps = 6/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + V A+S D+ S ++ I++ + T+LS+AP +L+M+T
Sbjct: 2 ILAAAIGLGTALLAGPVLAQSLNIDLGGP--QASATSRIIQLIALTTVLSVAPSILVMIT 59
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F RF++V LR +G PPN V++SLA+F+T +VM+PT +++ GIQP+M+ +
Sbjct: 60 SFTRFVVVLGFLRQALGTQQSPPNTVMVSLAMFLTAFVMTPTFEKAWTDGIQPVMDGHLD 119
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
E +R +PF FM + R +DL LFMDM+ R ++ K + + R LIP+FMISE
Sbjct: 120 EIEGFERAIKPFHAFMSKHVRAQDLKLFMDMS----RAKEVEKAEDVPLRALIPAFMISE 175
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LRR+FEIGFLI LPFLIIDM++A+++M+MGMMM+PP ISLPFK+IFFV++DGW L+V +
Sbjct: 176 LRRAFEIGFLIFLPFLIIDMVIASVLMSMGMMMIPPAMISLPFKLIFFVMVDGWYLVVGS 235
Query: 241 LVKSF 245
LV+S+
Sbjct: 236 LVQSY 240
>gi|324114209|gb|EGC08182.1| flagellar biosynthetic protein FliP [Escherichia fergusonii B253]
Length = 245
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 100/245 (40%), Positives = 155/245 (63%), Gaps = 5/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ L+LVTP A+ +P + V+T T L+ P +L+M+T
Sbjct: 4 LLTLIPAMLWLVTP-CALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMT 62
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 63 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKIS 122
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+++ A+P FM TRE DL+LF +A++ I + + RIL+P+++ SE
Sbjct: 123 MQEALEKGAQPLREFMLRQTREADLALFARLANTG----PIQGPEVVPMRILLPAYVTSE 178
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +
Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238
Query: 241 LVKSF 245
L +SF
Sbjct: 239 LAQSF 243
>gi|120613021|ref|YP_972699.1| flagellar biosynthesis protein FliP [Acidovorax citrulli AAC00-1]
gi|120591485|gb|ABM34925.1| flagellar biosynthetic protein FliP [Acidovorax citrulli AAC00-1]
Length = 262
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 98/245 (40%), Positives = 146/245 (59%), Gaps = 4/245 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + AL SL ++ A + + ++T FT LS P +L+M+T
Sbjct: 21 VALAWMALVPSAWAQAAGGGSLPVLIGSGAGGTSYSVPIQTLLFFTALSFLPAVLLMMTG 80
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R +IV S++R +G S PPN VII L+LF+TF+VM PT DR P NN IT
Sbjct: 81 FTRIVIVLSLIRQAIGTQSAPPNQVIIGLSLFLTFFVMGPTFDRVYADAYLPYSNNTITF 140
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A++R P FM TR+ D +LF +A T + R+L+P+F+ SEL
Sbjct: 141 EQAVERAEAPMRSFMLKQTRQSDFALFARLAKLPSGAT----AETAPMRVLVPAFVTSEL 196
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P ++LPFK++ FVL DGW+LL+ +L
Sbjct: 197 KSAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGSL 256
Query: 242 VKSFI 246
SF+
Sbjct: 257 AASFV 261
>gi|270262391|ref|ZP_06190662.1| flagellar biosynthetic protein FliP [Serratia odorifera 4Rx13]
gi|270043075|gb|EFA16168.1| flagellar biosynthetic protein FliP [Serratia odorifera 4Rx13]
Length = 241
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 92/240 (38%), Positives = 147/240 (61%), Gaps = 4/240 (1%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
A L+ A+ + + V+T + T LS P +L+M+T F R
Sbjct: 4 LAATLLLVSPAALAQLPGLISQPLADGGQSWSLPVQTLVLLTSLSFLPAMLLMMTSFTRI 63
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
IIV +LR +G S PPN V++ LALF+TF++MSP D+ + P ++I+ A+
Sbjct: 64 IIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISLDAAL 123
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+ ++P FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F
Sbjct: 124 DKGSQPLREFMLRQTRETDLALYARLANQP----PLAGPEAVPMRILLPAYVTSELKTAF 179
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 180 QIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 239
>gi|319764505|ref|YP_004128442.1| flagellar biosynthetic protein flip [Alicycliphilus denitrificans
BC]
gi|317119066|gb|ADV01555.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans
BC]
Length = 251
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 88/241 (36%), Positives = 141/241 (58%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
C + +L V+ A + + ++T FT LS P +L+M+T F R
Sbjct: 13 CLLIAGAALGQQQGGAGTLPLVVGSGAGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTR 72
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
+IV S+LR +G PPN V++ L+LF+T +VM PTLD+ + P N ++ A
Sbjct: 73 IVIVLSLLRQAIGTQQAPPNQVVVGLSLFLTLFVMGPTLDKVYQEAYVPYTTNALSFEQA 132
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+ + P FM TR+ D +LF +A + + R+L+P+F+ SEL+ +
Sbjct: 133 LAKAEAPMRGFMLKQTRQSDFTLFARLAKL----DEGVTAETAPLRVLVPAFVTSELKTA 188
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF++ +PFLIIDM+V++++M++GMMML P ++LPFK++ FVL DGW+LL+ +L S
Sbjct: 189 FQIGFMVFIPFLIIDMVVSSVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAAS 248
Query: 245 F 245
F
Sbjct: 249 F 249
>gi|260767696|ref|ZP_05876631.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
gi|260617205|gb|EEX42389.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
gi|315179472|gb|ADT86386.1| flagellar biosynthetic protein FliP [Vibrio furnissii NCTC 11218]
Length = 299
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 90/236 (38%), Positives = 142/236 (60%), Gaps = 5/236 (2%)
Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
+ + P + ++ + T+L P ++I++T F R ++V
Sbjct: 67 MALGSASGSGGIPAFTMTTNPDGSEDYSVNLQILALMTMLGFLPAMVILMTSFTRIVVVM 126
Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
SILR MG+ P N VI+ +A+F+TF++MSP L++ + IQP +N QI+ A R
Sbjct: 127 SILRQAMGLQQTPSNQVIVGIAIFLTFFIMSPVLNKINDQAIQPYLNEQISARQAFDRAQ 186
Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
EP FM TR KDL F+++A ++ + + +LIP+F+ SEL+ +F+IGF
Sbjct: 187 EPMKAFMLKQTRVKDLETFVNIAG-----AEVQNPEDVSMAVLIPAFITSELKTAFQIGF 241
Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++ LPFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 242 MLFLPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297
>gi|227112531|ref|ZP_03826187.1| flagellar biosynthesis protein FliP [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
gi|227328348|ref|ZP_03832372.1| flagellar biosynthesis protein FliP [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 258
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 103/244 (42%), Positives = 152/244 (62%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+RY L V+A+ +P T V+T + T L+ P L+M+T
Sbjct: 17 LRYGLAIGLLFMAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVLLTSLTFIPAALLMMTS 76
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIV S+LR +G + PPN V++ L LF+TF+VMSP L+R + P +QI+
Sbjct: 77 FTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISM 136
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
AI+R AEP FM TRE DL+LF +A +I + + R+L+P+F+ SEL
Sbjct: 137 EVAIERGAEPVREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSEL 192
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L
Sbjct: 193 KTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL 252
Query: 242 VKSF 245
+SF
Sbjct: 253 AQSF 256
>gi|296103629|ref|YP_003613775.1| Flagellar biosynthetic protein FliP [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058088|gb|ADF62826.1| Flagellar biosynthetic protein FliP [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 243
Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats.
Identities = 95/226 (42%), Positives = 146/226 (64%), Gaps = 4/226 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
++ + P+ T V+T + + + P +L+M+T F R IIV ++R +G
Sbjct: 20 AANGDITLGQPSGEGGWTLPVQTLLLLSGFTFIPAILLMMTGFTRIIIVLGLMRNALGTP 79
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
+ PPN V++ L+LF+TF+VMSP + E QPL N+IT A+ +P FM +
Sbjct: 80 TAPPNQVLVGLSLFLTFFVMSPVFSQIYEKAWQPLQENKITMEVALTEGVKPLRAFMLDQ 139
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TRE DL++F +A + DI + + IL+P+F+ SEL+ +F+IGF I +PFLIID
Sbjct: 140 TRESDLAMFARIAKTP----DIASPEEVPLSILVPAFITSELKTAFQIGFTIFIPFLIID 195
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++VA+I+MA+GMMM+PPT+I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 196 LVVASILMALGMMMVPPTTIALPFKLMLFVLVDGWQLLVGSLAQSF 241
>gi|13472582|ref|NP_104149.1| flagellar biosynthesis protein FliP [Mesorhizobium loti MAFF303099]
gi|14023328|dbj|BAB49935.1| flagellar biosynthesis protein; FliP [Mesorhizobium loti
MAFF303099]
Length = 243
Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats.
Identities = 131/245 (53%), Positives = 179/245 (73%), Gaps = 3/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M ++ A + V A L AD + +I++ FG+ T+LS+AP LLIMVT
Sbjct: 1 MKKFLLAAALIGAATSVAAAQQLDLGGIGKADGATVGYIIQMFGLLTVLSVAPGLLIMVT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F RF+I FSILR G+G+ S P NL++ISL+LFMTFYVM+PT D++ G++PLM+NQI+
Sbjct: 61 SFTRFVIAFSILRAGIGLQSTPANLILISLSLFMTFYVMAPTFDQAWNTGVKPLMDNQIS 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+T A +++++PF FM +N R+KD LF D+A + + ++ RIL+P+FMISE
Sbjct: 121 QTEAFEKISDPFRTFMLHNVRDKDFDLFADLARERG---QVVAKETVDLRILVPAFMISE 177
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT +SLPFK++FFVLIDGW+LLV +
Sbjct: 178 IRRGFEIGFLIVLPFLVIDLIVATITMAMGMMMLPPTVVSLPFKILFFVLIDGWNLLVGS 237
Query: 241 LVKSF 245
LV+SF
Sbjct: 238 LVRSF 242
>gi|253688962|ref|YP_003018152.1| flagellar biosynthetic protein FliP [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251755540|gb|ACT13616.1| flagellar biosynthetic protein FliP [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 258
Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats.
Identities = 105/244 (43%), Positives = 152/244 (62%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+RY L+ V+A+ +P T V+T T L+ P L+M+T
Sbjct: 17 LRYGLAISLLLLAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVFLTSLTFIPAALLMMTS 76
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIV S+LR +G + PPN V++ L LF+TF+VMSP L+R E P +QI+
Sbjct: 77 FTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYEEAYLPFSQDQISM 136
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
AI+R AEP FM TRE DL+LF +A +I + + R+L+P+F+ SEL
Sbjct: 137 EVAIERGAEPVREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSEL 192
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L
Sbjct: 193 KTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL 252
Query: 242 VKSF 245
+SF
Sbjct: 253 AQSF 256
>gi|170769417|ref|ZP_02903870.1| flagellar biosynthetic protein FliP [Escherichia albertii TW07627]
gi|170121741|gb|EDS90672.1| flagellar biosynthetic protein FliP [Escherichia albertii TW07627]
Length = 245
Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats.
Identities = 99/244 (40%), Positives = 154/244 (63%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + LF + L FA+ +P + V+T T L+ P +L+M+T
Sbjct: 4 LLWVTPVLFWLVTPLTFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTS 63
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 64 FTRIIIVFGLLRNALGTLSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISM 123
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+++ A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL
Sbjct: 124 QEALEKGAQPLREFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSEL 179
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L
Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239
Query: 242 VKSF 245
+SF
Sbjct: 240 AQSF 243
>gi|311992339|gb|ADQ26743.1| flagellar export component [Aeromonas hydrophila]
Length = 258
Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats.
Identities = 94/235 (40%), Positives = 144/235 (61%), Gaps = 7/235 (2%)
Query: 13 TPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
L A+ + V + + ++ + T LS P ++IM+T F R IIV
Sbjct: 23 CSPLALAQDGMSAVTIKTMADGSQEYSLTLQVLALMTALSFLPAMVIMMTSFTRIIIVLG 82
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
ILR +G+ P N V+I +ALFM+F++MSP LDR +QP + I A+++
Sbjct: 83 ILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRINNEALQPYLAETIQAKEALEKAEL 142
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM TR KDL+ FM++A+ + K + R+LIP+F+ SEL+ +F+IGF+
Sbjct: 143 PIHQFMLAQTRIKDLNTFMEIANV-----QVDKPADVPLRVLIPAFVTSELKTAFQIGFM 197
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ LPFL+ID++VA+I+MAMGMMML P +SLPFK++ FV++DGW+L++ +L SF
Sbjct: 198 LFLPFLVIDLVVASILMAMGMMMLSPMLVSLPFKLMLFVMVDGWNLILGSLANSF 252
>gi|333003044|gb|EGK22598.1| flagellar biosynthetic protein FliP [Shigella flexneri VA-6]
Length = 245
Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats.
Identities = 97/238 (40%), Positives = 150/238 (63%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLIMPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|86750888|ref|YP_487384.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
HaA2]
gi|86573916|gb|ABD08473.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
HaA2]
Length = 254
Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats.
Identities = 109/245 (44%), Positives = 166/245 (67%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + + A + + ++ ++ + T+LSIAP +LIM+T
Sbjct: 10 VVLFLTVLIAAAAALAAPAHAQDVSINLGGGGTGVTERAIQLIALLTVLSIAPSILIMMT 69
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R ++V S+LRT +G + PPN+VII+LALF+T +VM PTL +S + GI+PL+ N+++
Sbjct: 70 SFTRIVVVLSLLRTALGTATAPPNMVIIALALFLTAFVMGPTLQKSYDDGIKPLIANEMS 129
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ R + P +FM+ N REKDL LF+D++ T + + RIL+P+FMISE
Sbjct: 130 VEDALVRASGPLRIFMQKNVREKDLKLFLDLSGEPPPAT----PEDLSLRILMPAFMISE 185
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ +
Sbjct: 186 LKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGS 245
Query: 241 LVKSF 245
LV+S+
Sbjct: 246 LVQSY 250
>gi|160880831|ref|YP_001559799.1| flagellar biosynthetic protein FliP [Clostridium phytofermentans
ISDg]
gi|160429497|gb|ABX43060.1| flagellar biosynthetic protein FliP [Clostridium phytofermentans
ISDg]
Length = 281
Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats.
Identities = 94/223 (42%), Positives = 145/223 (65%), Gaps = 4/223 (1%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
+ N + ++ I T++++AP +LIM+T F R I+V +R+ +G + P
Sbjct: 62 ISFSFNSGDGTGSLSATLKMLLILTLITLAPSILIMLTSFIRIIVVLHFVRSALGTQTTP 121
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN V+I LALF+T ++MSP + +QPL +IT+ A + EP FM + T E
Sbjct: 122 PNQVLIGLALFLTLFIMSPIITNINTNAVQPLSKGEITQEQAFTQGMEPLRDFMFDQTNE 181
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
KD+ LF+D+A T++ + LIP+F+ISELR +F IGFLI +PFLIIDM+V
Sbjct: 182 KDMQLFLDIAGV----TEVNDRADVPSTALIPAFIISELRAAFIIGFLIYIPFLIIDMVV 237
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+ +M+MGMMMLPPT+IS+PFK++ F++ DGW+L++ +++KSF
Sbjct: 238 ASTLMSMGMMMLPPTTISMPFKILLFIMADGWNLIIGSVIKSF 280
>gi|292489152|ref|YP_003532039.1| flagellar biosynthetic protein FliP [Erwinia amylovora CFBP1430]
gi|292900270|ref|YP_003539639.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
gi|291200118|emb|CBJ47244.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
gi|291554586|emb|CBA22219.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora
CFBP1430]
Length = 247
Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats.
Identities = 95/244 (38%), Positives = 151/244 (61%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + + P + ++ + P T V+T + + L+ P +L+M+T
Sbjct: 6 VLRTLLLIAGMLPAVGALAANSDITLASPQGNGGWTLPVQTLVLLSSLTFLPAILLMMTG 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIV ++R +G + PPN V++ LALF+TFYVMSP ++ E QPL ++IT
Sbjct: 66 FTRIIIVLGLMRNALGTPTSPPNQVLVGLALFLTFYVMSPVFNQIYEQAWQPLQEDKITM 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+++ +P FM + TRE DL++F MA + + + IL+P+F+ SEL
Sbjct: 126 EVALEQGVKPLRAFMLDQTRENDLAMFAQMAK----AGEFKGPEEVPLGILVPAFVTSEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +L
Sbjct: 182 KTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGSL 241
Query: 242 VKSF 245
+SF
Sbjct: 242 AQSF 245
>gi|117618724|ref|YP_855914.1| flagellar biosynthesis protein FliP [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560131|gb|ABK37079.1| flagellar biosynthetic protein FliP [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 259
Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats.
Identities = 94/235 (40%), Positives = 144/235 (61%), Gaps = 7/235 (2%)
Query: 13 TPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
L A+ + V + + ++ + T LS P ++IM+T F R IIV
Sbjct: 24 CSPLALAQDGMSAVTIKTMADGSQEYSLTLQVLALMTALSFLPAIVIMMTSFTRIIIVLG 83
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
ILR +G+ P N V+I +ALFM+F++MSP LDR +QP + I A+++
Sbjct: 84 ILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRINNEALQPYLAETIQAKEALEKAEL 143
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM TR KDL+ FM++A+ + K + R+LIP+F+ SEL+ +F+IGF+
Sbjct: 144 PIHQFMLAQTRIKDLNTFMEIANV-----QVDKPADVPLRVLIPAFVTSELKTAFQIGFM 198
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ LPFL+ID++VA+I+MAMGMMML P +SLPFK++ FV++DGW+L++ +L SF
Sbjct: 199 LFLPFLVIDLVVASILMAMGMMMLSPMLVSLPFKLMLFVMVDGWNLILGSLANSF 253
>gi|317492418|ref|ZP_07950847.1| flagellar biosynthetic protein FliP [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919757|gb|EFV41087.1| flagellar biosynthetic protein FliP [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 248
Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats.
Identities = 94/217 (43%), Positives = 142/217 (65%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ + V+T T L+ P L+M+T F R IIV +LR+ +G S PPN V++
Sbjct: 34 LANGGQNWSLPVQTLVFLTSLTFLPAALLMMTSFTRIIIVLGLLRSALGTPSAPPNQVML 93
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF+VMSP D+ + QP ++IT A+ R A+P FM TRE DL+L+
Sbjct: 94 GLALFLTFFVMSPVFDKIYQDAYQPFSQDKITMDVAMDRGAQPLREFMLRQTRETDLALY 153
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+A+ + + + RIL+P+++ SEL+ +F+IGF I +PFLIID++VA+++MA
Sbjct: 154 AKLANLP----QMAGPEDVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVVASVLMA 209
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 210 LGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 246
>gi|85060034|ref|YP_455736.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str.
'morsitans']
gi|84780554|dbj|BAE75331.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str.
'morsitans']
Length = 253
Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats.
Identities = 101/239 (42%), Positives = 150/239 (62%), Gaps = 4/239 (1%)
Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
AL L+ FA+ +P + V+T T L+ P L+M+T F R I
Sbjct: 17 AALMLLFAPACFAQLPSIISQPLPGGSQNWSLPVQTLVFLTSLTFIPAALLMMTSFTRII 76
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IV +LR+ +G S PPN V++ LALF+TF+VMSP LD PL N+I+ TA++
Sbjct: 77 IVLGLLRSAIGTPSAPPNQVLLGLALFLTFFVMSPVLDSIYTEAYLPLSENKISMQTALE 136
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
R ++P FM TRE DL LF +A+ + + + RIL+P+++ SEL+ +F+
Sbjct: 137 RGSQPLRAFMLRQTREADLGLFARLANVP----PLEGPEAVPMRILLPAYVTSELKTAFQ 192
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 193 IGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLSSLAQSF 251
>gi|284159406|ref|YP_440590.3| flagellar biosynthesis protein FliP [Burkholderia thailandensis
E264]
gi|83653869|gb|ABC37932.1| flagellar biosynthetic protein [Burkholderia thailandensis E264]
Length = 276
Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats.
Identities = 95/241 (39%), Positives = 142/241 (58%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A + P + + V+T + T+LS P +L+M+T F R
Sbjct: 39 ILIGLAPALACAQAAGLPAFNSAPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 98
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G S PPN V++ LALF+T +VMSP LD++ +P + A
Sbjct: 99 IIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDKAYTDAYKPFSEGTLQMDQA 158
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+QR PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+
Sbjct: 159 VQRGTAPFKTFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTG 214
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 215 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 274
Query: 245 F 245
F
Sbjct: 275 F 275
>gi|295696128|ref|YP_003589366.1| flagellar biosynthetic protein FliP [Bacillus tusciae DSM 2912]
gi|295411730|gb|ADG06222.1| flagellar biosynthetic protein FliP [Bacillus tusciae DSM 2912]
Length = 264
Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats.
Identities = 94/239 (39%), Positives = 149/239 (62%), Gaps = 4/239 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
+ L + + ++ + T+LS+AP +L+M+T F R I+
Sbjct: 30 CALAAPADPTAVIPGLPSTLQPDSSPQGVAGTLQLILLITVLSLAPGILVMITSFTRMIV 89
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
V S +R+ + + PPN V+I LAL +TF+VM+PTL + + +QP + ++T+T AI R
Sbjct: 90 VLSFVRSALAVQQTPPNQVLIGLALALTFFVMAPTLSQVNQQAVQPYLRGELTQTQAIAR 149
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
PF FM TREKDL LF+D + + + + I +L+P++ ISEL+ +FEI
Sbjct: 150 AEVPFKHFMAKQTREKDLQLFLDYRNVALPDR----VEDIPMSLLVPAYTISELKTAFEI 205
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
GF+I +PFLIIDM++++++MAMGMMMLPP +SLPFK++ FVL DGW L+V++L+ ++
Sbjct: 206 GFMIFIPFLIIDMVISSVLMAMGMMMLPPVIVSLPFKILLFVLADGWYLIVKSLLAGYV 264
>gi|322421721|ref|YP_004200944.1| flagellar biosynthetic protein FliP [Geobacter sp. M18]
gi|320128108|gb|ADW15668.1| flagellar biosynthetic protein FliP [Geobacter sp. M18]
Length = 252
Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats.
Identities = 91/231 (39%), Positives = 149/231 (64%), Gaps = 8/231 (3%)
Query: 19 AKSSLHDVMNIPAD----LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
A+ +++ + + +++ F + T++S+AP LL+M T F R ++V S LR+
Sbjct: 25 AEPLSLPTVSVGVGKVSKPADVSVVLQIFFVMTVISLAPSLLMMTTSFTRIVVVLSFLRS 84
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G P N +++ L+LF+TF++M+P + +QP N IT+ A++R P
Sbjct: 85 ALGTQQAPSNQIVVGLSLFLTFFIMAPVWQQVNTQALQPYKANTITQEEALKRGVAPLRK 144
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM + REKDL+LF++++ D I LIP++M+SEL+ +F+IGFL+ +P
Sbjct: 145 FMLSQVREKDLALFINLSKLPRPK----NADDIPTMTLIPAYMVSELKTAFQIGFLVFIP 200
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FL++DM+VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 201 FLVLDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 251
>gi|172059104|ref|YP_001806756.1| flagellar biosynthesis protein FliP [Burkholderia ambifaria MC40-6]
gi|171991621|gb|ACB62540.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MC40-6]
Length = 253
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 95/241 (39%), Positives = 146/241 (60%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A + P + + V+T + T+LS P +L+M+T F R
Sbjct: 16 LILGLAPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + + A
Sbjct: 76 IIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPFSDGSMPMEQA 135
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
++R PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+
Sbjct: 136 VRRGVAPFKTFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTG 191
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQS 251
Query: 245 F 245
F
Sbjct: 252 F 252
>gi|221201779|ref|ZP_03574816.1| flagellar biosynthetic protein FliP [Burkholderia multivorans
CGD2M]
gi|221207716|ref|ZP_03580724.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD2]
gi|221172562|gb|EEE05001.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD2]
gi|221178199|gb|EEE10609.1| flagellar biosynthetic protein FliP [Burkholderia multivorans
CGD2M]
Length = 253
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 94/217 (43%), Positives = 143/217 (65%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
P + + V+T + T+LS P +++M+T F R IIV S+LR +G + PPN V++
Sbjct: 40 GPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLV 99
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF+VMSP LDR+ G +P + + A+QR PF FM TRE DL+LF
Sbjct: 100 GLALFLTFFVMSPVLDRAYTDGYKPFSDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALF 159
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
++ + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+
Sbjct: 160 AKISK----AAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMS 215
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 216 MGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252
>gi|58039965|ref|YP_191929.1| flagellar biosynthesis protein FliP [Gluconobacter oxydans 621H]
gi|58002379|gb|AAW61273.1| Flagellar biosynthetic protein FliP [Gluconobacter oxydans 621H]
Length = 255
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 104/247 (42%), Positives = 162/247 (65%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIP--ADLSISTWIVRTFGIFTILSIAPILLIM 58
++ L P L A++ D+ ++ +V+ + T+LS+AP LL+M
Sbjct: 11 LVPVFVLLACLAFPHLAHAQAVSIDLGQNGASGGAGTTSRLVQLTALITVLSLAPSLLVM 70
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R +IV S+LR+ +G +PPN V+I LALF+T +VM PTL +S + GI+PLM +
Sbjct: 71 ITAFTRIVIVLSLLRSALGAQGMPPNTVLIGLALFLTLFVMQPTLQKSWDAGIEPLMAGR 130
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+ E + A+PF FM R D++ F+++AH K +R+L+P+FMI
Sbjct: 131 VGEMEGLTAAAQPFHDFMAVTARPADVATFLNIAHEKPP----AKIGDTPWRVLVPAFMI 186
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
ELRR FE+GFL+ LPFL+ID++V++++M++GMMMLPP+++SLPFK+IFFV++DGWSL+
Sbjct: 187 GELRRGFEMGFLLYLPFLVIDLVVSSVLMSLGMMMLPPSTVSLPFKLIFFVVVDGWSLVA 246
Query: 239 ENLVKSF 245
+LV+SF
Sbjct: 247 GSLVRSF 253
>gi|27365290|ref|NP_760818.1| flagellar biosynthesis protein FliP [Vibrio vulnificus CMCP6]
gi|37680655|ref|NP_935264.1| flagellar biosynthesis protein FliP [Vibrio vulnificus YJ016]
gi|320155674|ref|YP_004188053.1| flagellar biosynthesis protein FliP [Vibrio vulnificus MO6-24/O]
gi|27361437|gb|AAO10345.1| flagellar biosynthetic protein FliP [Vibrio vulnificus CMCP6]
gi|37199404|dbj|BAC95235.1| flagellar biosynthesis pathway, component FliP [Vibrio vulnificus
YJ016]
gi|319930986|gb|ADV85850.1| flagellar biosynthesis protein FliP [Vibrio vulnificus MO6-24/O]
Length = 289
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 137/224 (61%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 69 PAFTMTTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 128
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF++MSP ++ E +QP +N Q+T A P FM TR
Sbjct: 129 PSNQVIIGIALFLTFFIMSPVINEVNEQAVQPYLNEQLTAREAFDAAQGPMKAFMLKQTR 188
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 189 VKDLETFVNMSG-----EQATNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 243
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 244 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287
>gi|330828809|ref|YP_004391761.1| flagellar biosynthetic protein FliP [Aeromonas veronii B565]
gi|328803945|gb|AEB49144.1| Flagellar biosynthetic protein FliP [Aeromonas veronii B565]
Length = 257
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 97/245 (39%), Positives = 148/245 (60%), Gaps = 5/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ LF P L S V + + ++ + T LS P ++IM+T
Sbjct: 13 LLVSLLIPLFCSWPALAQDAMSAVTVKTMGDGSQEYSLTLQVLALMTALSFLPAMVIMMT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R I+V ILR +G+ P N V+I +ALFM+F++MSP LDR + +QP + I
Sbjct: 73 SFTRIIVVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRINDEALQPYLAETIQ 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A++R P FM TR KDL+ FM++A+ + K + R+LIP+F+ SE
Sbjct: 133 AKEALERAELPIHQFMLAQTRIKDLNTFMEIANV-----QVEKPADVPLRVLIPAFVTSE 187
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF++ LPFL+ID++VA+I+MAMGMMML P +SLPFK++ FV++DGW+L++ +
Sbjct: 188 LKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVMVDGWNLILGS 247
Query: 241 LVKSF 245
L SF
Sbjct: 248 LANSF 252
>gi|260772332|ref|ZP_05881248.1| flagellar biosynthesis protein FliP [Vibrio metschnikovii CIP
69.14]
gi|260611471|gb|EEX36674.1| flagellar biosynthesis protein FliP [Vibrio metschnikovii CIP
69.14]
Length = 299
Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats.
Identities = 89/224 (39%), Positives = 139/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 79 PAFTMTTNADGGEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 138
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +A+F+TF++MSP L++ + +QP +N QI+ A +P FM TR
Sbjct: 139 PSNQVIIGIAIFLTFFIMSPVLNQINDQAVQPYLNEQISARQAFDLAQDPMKSFMLKQTR 198
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F+++A S+ + + ILIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 199 LKDLETFVNIAGSN-----AQNPEDVSMAILIPAFITSELKTAFQIGFMLFLPFLIIDLV 253
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 254 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297
>gi|90021817|ref|YP_527644.1| flagellar biosynthesis protein FliP [Saccharophagus degradans 2-40]
gi|89951417|gb|ABD81432.1| flagellar biosynthetic protein FliP [Saccharophagus degradans 2-40]
Length = 280
Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats.
Identities = 92/220 (41%), Positives = 141/220 (64%), Gaps = 4/220 (1%)
Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
V P + ++ + T L+ P +LIM+T F R IIVFSILR +G+ P N
Sbjct: 63 VTTQPDGSQEYSITLQILFLMTALTFLPAILIMMTAFTRIIIVFSILRQALGLQQSPSNQ 122
Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
++I L LF+TF++M+P +++ + +QP + QIT A++ +P FM NTRE DL
Sbjct: 123 ILIGLTLFLTFFIMTPVIEKVNQNALQPYIAEQITAQQALEETKKPVRKFMLANTRESDL 182
Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
LF +A + + I + +L+PSF+ SEL+ +F+IGF++ +PFL+ID++VA++
Sbjct: 183 ELFFRIASLE----PVATPEEIPFSVLVPSFITSELKTAFQIGFILFIPFLVIDIVVASV 238
Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 239 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAASF 278
>gi|319781675|ref|YP_004141151.1| flagellar biosynthetic protein FliP [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167563|gb|ADV11101.1| flagellar biosynthetic protein FliP [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 243
Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats.
Identities = 131/245 (53%), Positives = 176/245 (71%), Gaps = 3/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M ++ + + A L AD + +I++ FG+ T+LS+AP LLIMVT
Sbjct: 1 MRKFLLATAMIAAATSIAAAQQLDLGGIGKADGTTVGYIIQMFGLLTVLSVAPGLLIMVT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F RF+I FSILR G+G+ S P NL++ISL+LFMTFYVM+PT D++ G++PLM+NQIT
Sbjct: 61 SFTRFVIAFSILRAGIGLQSTPANLILISLSLFMTFYVMAPTFDQAWNTGVKPLMDNQIT 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+T A ++++PF FM +N R+KD LF D+A D ++ RIL+P+FMISE
Sbjct: 121 QTEAFDKISDPFRTFMLHNVRDKDFDLFADLARERG---QTVSRDTVDLRILVPAFMISE 177
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT +SLPFK++FFVLIDGW+LLV +
Sbjct: 178 IRRGFEIGFLIVLPFLVIDLIVATITMAMGMMMLPPTVVSLPFKILFFVLIDGWNLLVGS 237
Query: 241 LVKSF 245
LV+SF
Sbjct: 238 LVRSF 242
>gi|33596149|ref|NP_883792.1| flagellar biosynthesis protein FliP [Bordetella parapertussis
12822]
gi|33573152|emb|CAE36802.1| flagellar biosynthetic protein FliP [Bordetella parapertussis]
Length = 266
Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats.
Identities = 100/236 (42%), Positives = 146/236 (61%), Gaps = 6/236 (2%)
Query: 12 VTPELVFAKSSLHDVMNIPA--DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
+ P A+++L + P + ++T + T LS P L+M+T F R IIV
Sbjct: 33 LWPSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVL 92
Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
+LR+ MG PPN V+I LALF+TFY MSP D+ QPL I TA++R
Sbjct: 93 GLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAG 152
Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
P FM + TRE DL+LF ++A+ + + RILIP+F+ SEL+ +F+IGF
Sbjct: 153 SPLHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGF 208
Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF
Sbjct: 209 TIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 264
>gi|292669767|ref|ZP_06603193.1| flagellar biosynthetic protein FliP [Selenomonas noxia ATCC 43541]
gi|292648564|gb|EFF66536.1| flagellar biosynthetic protein FliP [Selenomonas noxia ATCC 43541]
Length = 249
Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats.
Identities = 90/225 (40%), Positives = 150/225 (66%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
++ + + ++ + TI+S+AP +L+M T F R ++V LR + +
Sbjct: 28 PTVSLGVGTSENPQDVATSMQLLAVLTIVSLAPAILVMTTSFVRIVVVIGFLRNALSTQN 87
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
VPPN V+I+L+LF++FY+M+P ++ E GIQP + +I++ A++ V +P FM T
Sbjct: 88 VPPNQVVIALSLFLSFYIMAPYWGQANENGIQPYLAGEISQEQALENVVDPMREFMFRQT 147
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL+LF++++ + + + + LIP+F+ISEL+ +F+IGF+I +PF++IDM
Sbjct: 148 RESDLALFVNLSDAPRPDG----PEDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDM 203
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IVA+ +M+MGMMMLPP ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 204 IVASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 248
>gi|161523220|ref|YP_001578232.1| flagellar biosynthesis protein FliP [Burkholderia multivorans ATCC
17616]
gi|189348923|ref|YP_001944551.1| flagellar biosynthesis protein FliP [Burkholderia multivorans ATCC
17616]
gi|160340649|gb|ABX13735.1| flagellar biosynthetic protein FliP [Burkholderia multivorans ATCC
17616]
gi|189332945|dbj|BAG42015.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC
17616]
Length = 253
Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats.
Identities = 94/217 (43%), Positives = 143/217 (65%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
P + + V+T + T+LS P +++M+T F R IIV S+LR +G + PPN V++
Sbjct: 40 GPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLV 99
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF+VMSP LDR+ G +P + + A+QR PF FM TRE DL+LF
Sbjct: 100 GLALFLTFFVMSPVLDRAYTDGYKPFSDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALF 159
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
++ + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+
Sbjct: 160 AKISK----AAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMS 215
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 216 MGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252
>gi|89068716|ref|ZP_01156102.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516]
gi|89045679|gb|EAR51741.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516]
Length = 282
Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats.
Identities = 114/237 (48%), Positives = 159/237 (67%), Gaps = 7/237 (2%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
+ + +S I++ + T+LS+AP LLI++T F RF+IVFSILR+ +
Sbjct: 41 AISDALSDQPAGADGTSELSGRILQLIALITVLSLAPGLLIVMTSFTRFVIVFSILRSAL 100
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G+ PPN+V+ S+ALFMTF+VM P + + E G+QPLM+N ITE A++R+A+PF FM
Sbjct: 101 GLNQTPPNVVLTSMALFMTFFVMQPVFEDAWEDGLQPLMSNAITEEQAVERIADPFKTFM 160
Query: 137 RNNTREKDLSLFMDMAHSSHRNT-------DITKNDHIEYRILIPSFMISELRRSFEIGF 189
NTR DL LF ++A + + +R L+P+FMISELRR+F IGF
Sbjct: 161 FANTRPVDLDLFREIAARAGGDDAGAIELPPPETAADASWRELVPAFMISELRRAFTIGF 220
Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
LI LPF+ ID+IVA+I+M+ GMMMLPP ISLPFKVIFFVLIDGW +L +L++S++
Sbjct: 221 LIFLPFIAIDLIVASILMSAGMMMLPPVLISLPFKVIFFVLIDGWHMLAGSLIESYL 277
>gi|328545499|ref|YP_004305608.1| flagellar transport protein FliP [polymorphum gilvum SL003B-26A1]
gi|326415240|gb|ADZ72303.1| Flagellar transport protein FliP [Polymorphum gilvum SL003B-26A1]
Length = 246
Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats.
Identities = 132/245 (53%), Positives = 166/245 (67%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M A L T A+ + + S S IV+ + T+LS+AP +LIMVT
Sbjct: 1 MRLVLAAAFLLATATAAGAQIPDLSTLIPEGEGSASGRIVQIIALLTVLSVAPGILIMVT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F RF + S LR+G+G+ + P NL++ISLALFMTFYVM+PT DR+ G+ PLMNN+I
Sbjct: 61 SFTRFAVALSFLRSGIGLQTTPGNLILISLALFMTFYVMAPTFDRAWTQGVVPLMNNEID 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
E A R+ EPF FM + RE+DL LF D+A +T +E R+LIP+FMISE
Sbjct: 121 EQEAYGRITEPFREFMLSQVREQDLVLFDDLAAGRLTDTPAASPREVELRVLIPAFMISE 180
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LRR FEIGFLI LPFL+IDMIVATI M+MGMMMLPPT ISLPFK +FF+LIDGW+LLV +
Sbjct: 181 LRRGFEIGFLIALPFLVIDMIVATITMSMGMMMLPPTVISLPFKALFFILIDGWNLLVGS 240
Query: 241 LVKSF 245
LV+SF
Sbjct: 241 LVRSF 245
>gi|74312488|ref|YP_310907.1| flagellar biosynthesis protein FliP [Shigella sonnei Ss046]
gi|73855965|gb|AAZ88672.1| flagellar biosynthesis [Shigella sonnei Ss046]
gi|323168931|gb|EFZ54611.1| flagellar biosynthetic protein FliP [Shigella sonnei 53G]
Length = 245
Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats.
Identities = 96/238 (40%), Positives = 149/238 (62%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MS +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSSVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|258404717|ref|YP_003197459.1| flagellar biosynthetic protein FliP [Desulfohalobium retbaense DSM
5692]
gi|257796944|gb|ACV67881.1| flagellar biosynthetic protein FliP [Desulfohalobium retbaense DSM
5692]
Length = 252
Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats.
Identities = 103/241 (42%), Positives = 154/241 (63%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L L F L ++ D ++ + T+LS+AP +L+M T F R
Sbjct: 15 AVGILLLPQAGWGFEIPRLTLGVDGTNDPDQVATGIQILFLLTVLSLAPAILLMTTSFIR 74
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
+IV S +R MG+ +PPN VII LALF+TF++MSP L + + +QP ++ +I + A
Sbjct: 75 IVIVLSFIRQAMGVRQMPPNQVIIGLALFLTFFIMSPVLSQMNQDALQPYLDQEIGDAQA 134
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
I+R P FM N R+KDL LF+D++ S T + I +L+P+FM+SE++R+
Sbjct: 135 IERAVSPMREFMFNQVRQKDLQLFVDISGSDQPET----REEIRTMLLVPAFMLSEIKRA 190
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGFLI +PFL+IDM+ A+++M+MGM+MLPP ISLPFK++ FVL+DGW L+V +LV+S
Sbjct: 191 FQIGFLIFVPFLVIDMVTASVLMSMGMLMLPPVIISLPFKILLFVLVDGWHLVVGSLVRS 250
Query: 245 F 245
F
Sbjct: 251 F 251
>gi|84502361|ref|ZP_01000497.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597]
gi|84389173|gb|EAQ01970.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597]
Length = 277
Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats.
Identities = 119/258 (46%), Positives = 165/258 (63%), Gaps = 16/258 (6%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPAD-----------LSISTWIVRTFGIFTILSIAP 53
L A+ + ++ +++ +++ T+LSIAP
Sbjct: 14 LLALGLLWHGGPAVAQDGGSFLSSVTDALSDAAPGSDERATLAGRLIQLVAAMTVLSIAP 73
Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113
LL+++T F RF+IVFS+LR+ +G+ PPN+V+ S+ALFMTF+VM P + + EMGI P
Sbjct: 74 GLLVIMTSFTRFVIVFSMLRSALGLNQTPPNMVLSSMALFMTFFVMQPVFEDAWEMGIDP 133
Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHI-----E 168
L+NN ITE A++R AEPF FM NTREKDL+LF D+A S T
Sbjct: 134 LINNVITEEQALERTAEPFRTFMLANTREKDLALFQDIAARSAGQTGADNLQVDEDGLPS 193
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+R L+P+FMISELRR+F IGFLI LPF+ ID+I+A+I+M+ GMMMLPP ISLPFKVIFF
Sbjct: 194 WRSLVPAFMISELRRAFSIGFLIYLPFVAIDLIIASILMSAGMMMLPPVLISLPFKVIFF 253
Query: 229 VLIDGWSLLVENLVKSFI 246
VLIDGW +L +L++S++
Sbjct: 254 VLIDGWYMLAGSLMESYL 271
>gi|56460298|ref|YP_155579.1| flagellar biosynthesis protein FliP [Idiomarina loihiensis L2TR]
gi|56179308|gb|AAV82030.1| Flagellar biosynthesis protein FliP [Idiomarina loihiensis L2TR]
Length = 248
Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats.
Identities = 94/246 (38%), Positives = 148/246 (60%), Gaps = 6/246 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
+ C A+ + PE FA L V P + ++ I T L+ P ++IM+
Sbjct: 5 LLLCILAVLCLLPEQAFAWQDLTAVTVKTNPDGSEEYSVTLQILAIMTALTFIPAMVIMM 64
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIV +ILR +G+ P N V++ +ALF++F++M+P L+ + +QP +N +I
Sbjct: 65 TSFTRIIIVLAILRQAIGLQQSPSNQVLLGIALFLSFFIMTPVLNEINDKALQPYLNEEI 124
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
A+ R P FM TR DL F++++ + + + + + +LIPSF+ S
Sbjct: 125 QSMEAVDRAKAPIKAFMLAQTRLTDLETFVEISGTEG----VQEPEDVPMSVLIPSFITS 180
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGWSL +
Sbjct: 181 ELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWSLTMS 240
Query: 240 NLVKSF 245
L SF
Sbjct: 241 TLAGSF 246
>gi|332343674|gb|AEE57008.1| flagellar biosynthetic protein FliP [Escherichia coli UMNK88]
Length = 245
Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats.
Identities = 96/238 (40%), Positives = 149/238 (62%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM RE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQIREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|295678047|ref|YP_003606571.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1002]
gi|295437890|gb|ADG17060.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1002]
Length = 269
Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats.
Identities = 97/235 (41%), Positives = 147/235 (62%), Gaps = 7/235 (2%)
Query: 15 ELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
L FA+++ P + + V+T + T+LS P +++M+T F R +IV S+
Sbjct: 39 TLSFAQTAGLPAFTTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIVIVLSL 98
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LR +G + PPN V++ LALF+TF+VMSP LD++ G +P + A+ R P
Sbjct: 99 LRQALGTTTTPPNQVLVGLALFLTFFVMSPVLDKAYNEGYKPFSEGTLPMDQAVSRGVAP 158
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
F FM TRE DL+LF ++H + + + +L+PSF+ SEL+ F IGF I
Sbjct: 159 FKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFTIGFTI 214
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 215 FIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 269
>gi|85058021|ref|YP_453723.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str.
'morsitans']
gi|84778541|dbj|BAE73318.1| flagellar protein FliP [Sodalis glossinidius str. 'morsitans']
Length = 256
Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats.
Identities = 95/228 (41%), Positives = 145/228 (63%), Gaps = 4/228 (1%)
Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
A+ L + +P + V+T + T L+ P L++++ F R IIV SILR +G
Sbjct: 31 AAQQGLIQMHPLPDGGQRWSLPVQTLVLLTSLTFLPAALLLMSGFTRIIIVLSILRNALG 90
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
S PPN +++ LAL +TF+VMSP LD P +QI TAI+R A+P FM
Sbjct: 91 TPSAPPNQILLGLALCLTFFVMSPVLDSIYRDAYLPFSQDQIDMDTAIERAAQPLRQFML 150
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
TRE DLSL+ + + + + +IL+P+F+ SEL+ +F+IGF + +PFLI
Sbjct: 151 TQTRETDLSLYARLGKQA----AFAGPEQVPMQILLPAFVTSELKTAFQIGFTLFIPFLI 206
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
ID+++A+++MA+GMMMLPPT++SLPFK++ FV++DGW LL+ +L +SF
Sbjct: 207 IDLVIASVLMALGMMMLPPTTVSLPFKLMLFVMVDGWQLLLGSLAQSF 254
>gi|39995531|ref|NP_951482.1| flagellar biosynthesis protein FliP [Geobacter sulfurreducens PCA]
gi|39982294|gb|AAR33755.1| flagellar biosynthetic protein FliP [Geobacter sulfurreducens PCA]
gi|298504532|gb|ADI83255.1| flagellar biogenesis protein FliP [Geobacter sulfurreducens KN400]
Length = 255
Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats.
Identities = 101/219 (46%), Positives = 146/219 (66%), Gaps = 4/219 (1%)
Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
+ + +++ F + T+LS+AP LL+M T F R +V S LR +G PPN +
Sbjct: 40 VGKATKPGDVSVVLQIFFLMTVLSLAPGLLMMTTSFTRIAVVLSFLRHAIGTQQAPPNQI 99
Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
II+L+LF+TF+VM+P + IQP QIT+ A++R P FM + TREKDL+
Sbjct: 100 IIALSLFLTFFVMAPVWQQVNTQAIQPYRAAQITQDEALKRAVAPMRKFMLSQTREKDLA 159
Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
LF++++ T D I LIP+FMISELR +F+IGFLI +PFL++DM+VA+++
Sbjct: 160 LFLNLSKLPRPRT----ADDIPTLTLIPAFMISELRTAFQIGFLIFIPFLVVDMVVASVL 215
Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+MGMMMLPP ISLPFK++ FVL+DGW L++ +L+KSF
Sbjct: 216 MSMGMMMLPPVMISLPFKILLFVLVDGWGLVIGSLIKSF 254
>gi|295098284|emb|CBK87374.1| flagellar biosynthetic protein FliP [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 245
Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats.
Identities = 94/232 (40%), Positives = 150/232 (64%), Gaps = 4/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
V+A+ + + V+T T L+ P +L+M+T F R IIVF +LR
Sbjct: 16 APSVYAQLPGLVSTPLANGGQSWSLSVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLR 75
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+G S PPN V++ LALF+TF++MSP +D+ QP ++I+ A+++ A+P
Sbjct: 76 NALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTEAYQPFSEDKISMQVALEKGAQPLR 135
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM TRE DL+LF +A++ ++ + + RIL+P+++ SEL+ +F+IGF I +
Sbjct: 136 EFMLRQTREADLALFARLANTG----ELQGPEAVPMRILLPAYVTSELKTAFQIGFTIFI 191
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 192 PFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLAQSF 243
>gi|293410304|ref|ZP_06653880.1| flagellar biosynthetic protein FliP [Escherichia coli B354]
gi|291470772|gb|EFF13256.1| flagellar biosynthetic protein FliP [Escherichia coli B354]
Length = 245
Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats.
Identities = 97/238 (40%), Positives = 150/238 (63%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLLGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|160896097|ref|YP_001561679.1| flagellar biosynthesis protein FliP [Delftia acidovorans SPH-1]
gi|160361681|gb|ABX33294.1| flagellar biosynthetic protein FliP [Delftia acidovorans SPH-1]
Length = 261
Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats.
Identities = 95/234 (40%), Positives = 145/234 (61%), Gaps = 4/234 (1%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
+ A +SL V+ + + + ++T FT LS P +L+M+T F R +IV S+
Sbjct: 30 LASWAQGAPASLPLVIGQGSGGTSFSVPIQTLLFFTALSFLPAILLMMTGFTRIVIVLSL 89
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
+R +G S PPN VII L+LF+T +VM PTLDR + P N +T AI++ P
Sbjct: 90 MRQALGTQSAPPNQVIIGLSLFLTLFVMGPTLDRVYQEAYVPYTTNAVTFEQAIEKAEAP 149
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
FM TR+ D +LF +A T ++ R+L+P+F+ SEL+ +F+IGF+I
Sbjct: 150 MRDFMLKQTRQSDFALFARLAKLDAGVT----SETAPLRVLVPAFVTSELKTAFQIGFMI 205
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFL+IDM+V++I+M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF
Sbjct: 206 FIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 259
>gi|332305669|ref|YP_004433520.1| flagellar biosynthetic protein FliP [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332172998|gb|AEE22252.1| flagellar biosynthetic protein FliP [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 251
Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats.
Identities = 91/247 (36%), Positives = 143/247 (57%), Gaps = 5/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIM 58
+ + A+ L P A+ + + T ++ I T LS+ P ++M
Sbjct: 4 LFFWLLAAVLLAAPSWAIAEPGIPALTMTENADGSQDYTMTLQVVAIMTALSLLPAFIMM 63
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R IIV SILR +G+ P N ++I ++LF++ ++M+P ++ E +QP +N Q
Sbjct: 64 MTSFTRIIIVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEKINETALQPYLNEQ 123
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
IT A + EP FM TR KDL F+++ + + ILIP+F+
Sbjct: 124 ITSIQAYELAKEPLRGFMLAQTRVKDLETFVEIGG---YEDQFQEPADVPMNILIPAFVT 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF++ +PFLI+D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L+
Sbjct: 181 SELKTAFQIGFMLFIPFLILDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIF 240
Query: 239 ENLVKSF 245
L SF
Sbjct: 241 GTLANSF 247
>gi|153953789|ref|YP_001394554.1| flagellar biosynthesis protein FliP [Clostridium kluyveri DSM 555]
gi|219854405|ref|YP_002471527.1| hypothetical protein CKR_1062 [Clostridium kluyveri NBRC 12016]
gi|146346670|gb|EDK33206.1| FliP [Clostridium kluyveri DSM 555]
gi|219568129|dbj|BAH06113.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 258
Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats.
Identities = 92/228 (40%), Positives = 147/228 (64%), Gaps = 4/228 (1%)
Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
F ++ ++ + ++ + TIL++ P +++M+T F R ++VF LRT MG
Sbjct: 34 FPIPNIDISVDNASTPQQYVGNIKLLIMLTILTLLPSIIMMMTSFVRIVVVFGFLRTAMG 93
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
PPN V++ LALF+T ++M P + IQP + N IT+ A++R A+P FM
Sbjct: 94 TQQSPPNQVLVGLALFLTVFIMLPVYGKINSEAIQPYLQNGITQEQAVERGAKPLREFML 153
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
TR+KDL LF+D A ++ T D+ ++IP+++ISEL+ +F+IGFL+ +PF+I
Sbjct: 154 KQTRQKDLKLFVDEAKLNYEVTK----DNAPLYVVIPAYIISELKTAFQIGFLLYIPFMI 209
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
ID++V +++M+MGM MLPP ISLPFK++ FV+ DGW LLV++L+ SF
Sbjct: 210 IDLVVGSVLMSMGMFMLPPVMISLPFKLLLFVMTDGWYLLVKSLIISF 257
>gi|300994267|ref|ZP_07180819.1| flagellar biosynthetic protein FliP [Escherichia coli MS 200-1]
gi|300304932|gb|EFJ59452.1| flagellar biosynthetic protein FliP [Escherichia coli MS 200-1]
Length = 245
Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats.
Identities = 96/238 (40%), Positives = 149/238 (62%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ +L+M+T F R II
Sbjct: 10 VLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIQAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>gi|298530624|ref|ZP_07018026.1| flagellar biosynthetic protein FliP [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509998|gb|EFI33902.1| flagellar biosynthetic protein FliP [Desulfonatronospira
thiodismutans ASO3-1]
Length = 236
Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats.
Identities = 95/240 (39%), Positives = 149/240 (62%), Gaps = 9/240 (3%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSIS-----TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
+ P L A+ + +++ + + + TILS+AP +++ +TCF R I
Sbjct: 1 MWPVLAQAQDPVLPSLSLQLSGEEAQPDNIAVALEILFLLTILSVAPAIVLTITCFTRII 60
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IVFS +R +G +PPN V+ +LA+F+T +M+P + +QP +N +I A+
Sbjct: 61 IVFSFIRHAIGTQQMPPNQVLAALAIFLTVAIMAPIGSEINQTALQPYLNEEIGHEEALS 120
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
R P FM +TRE+DLS+F + + + +LIP+FMISEL+ +F+
Sbjct: 121 RAEGPMREFMFKHTRERDLSVFYSITGMERP----ESREDVPTMLLIPAFMISELKTAFQ 176
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
IGFLI +PFLI+DM+VA+I+++MGMMMLPP IS+PFKV+ F+++DGW+LLV +LV SF+
Sbjct: 177 IGFLIYIPFLILDMVVASILLSMGMMMLPPVMISMPFKVLLFIMVDGWNLLVGSLVNSFV 236
>gi|82702484|ref|YP_412050.1| flagellar biosynthesis protein FliP [Nitrosospira multiformis ATCC
25196]
gi|82410549|gb|ABB74658.1| flagellar biosynthetic protein FliP [Nitrosospira multiformis ATCC
25196]
Length = 262
Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats.
Identities = 95/246 (38%), Positives = 151/246 (61%), Gaps = 8/246 (3%)
Query: 4 YCFFALFLVTPELVFAKS----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
L L TP + A++ P + ++T + T L+ P +L+M+
Sbjct: 20 IVAAVLLLTTPVVALAQAKGGFPAFSSTPAPRGGQTYSLSLQTLLLLTSLTFLPAVLLMM 79
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIV S+LR +G S PPN V++ LALF+TF+VMSP D+ + QP + N++
Sbjct: 80 TGFTRVIIVLSLLRQALGTQSSPPNQVLVGLALFLTFFVMSPVFDKIYQDAYQPYVENRM 139
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
T A+++ A P FM TRE DL+LF+ ++ + + + R+L+P+F+ S
Sbjct: 140 TMEQALEKGAVPLKAFMLKQTRETDLALFVKLSGRP----QLNGPEEVSLRVLVPAFVTS 195
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +F+IGF + +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW +L+
Sbjct: 196 ELKTAFQIGFAVFIPFLIIDMVVASVLMSMGMMMVSPALVALPFKIMLFVLVDGWHMLIG 255
Query: 240 NLVKSF 245
+L +SF
Sbjct: 256 SLAESF 261
>gi|89072284|ref|ZP_01158863.1| putative flagellar assembly protein [Photobacterium sp. SKA34]
gi|89051816|gb|EAR57268.1| putative flagellar assembly protein [Photobacterium sp. SKA34]
Length = 263
Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats.
Identities = 86/236 (36%), Positives = 130/236 (55%), Gaps = 5/236 (2%)
Query: 11 LVTPELVFAKSSLHDVMNIPADL-SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
++ A S L+ + + ++ + T LS P L+M T F R IIV
Sbjct: 31 VLFSSAAEANSGLNFLTVTDDQGEQEYSVKLQILLLMTALSFIPAFLLMATSFTRIIIVL 90
Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
SILR +G+ PPN +++ +AL +T +M P + P N IT A
Sbjct: 91 SILRQALGLQQSPPNRILVGIALSLTILIMRPVWTDVYDNAFVPYDNGDITLLQAFDTAE 150
Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
+P FM T + L M +A+ ++I + I++P+F+ISEL+ +F+IGF
Sbjct: 151 KPVRDFMLKQTHQSALEQMMRIANEPLD----QDVENISFAIVLPAFVISELKTAFQIGF 206
Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++ +PFLIID++VA+++MAMGMMML P ISLPFK+I FVL DGW++ V +L SF
Sbjct: 207 MLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLIVFVLADGWTMTVGSLSASF 262
>gi|221214540|ref|ZP_03587510.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD1]
gi|221165430|gb|EED97906.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD1]
Length = 253
Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats.
Identities = 96/241 (39%), Positives = 146/241 (60%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A + P + + V+T + T+LS P +++M+T F R
Sbjct: 16 LLLGLAPAFACAQAAGLPAFNASPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTR 75
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G + PPN V++ LALF+TF+VMSP LDR+ G +P + + A
Sbjct: 76 IIIVLSLLRQALGTATTPPNQVLVGLALFLTFFVMSPVLDRAYTDGYKPFSDGTLPMEQA 135
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+QR PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+
Sbjct: 136 VQRGVAPFKGFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTG 191
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQS 251
Query: 245 F 245
F
Sbjct: 252 F 252
>gi|161484783|ref|NP_669792.2| flagellar biosynthesis protein FliP [Yersinia pestis KIM 10]
gi|161511402|ref|NP_992929.2| flagellar biosynthesis protein FliP [Yersinia pestis biovar
Microtus str. 91001]
gi|161760581|ref|YP_070220.2| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP
32953]
gi|162100177|ref|YP_651108.2| flagellar biosynthesis protein FliP [Yersinia pestis Antiqua]
gi|162139435|ref|YP_648231.2| flagellar biosynthesis protein FliP [Yersinia pestis Nepal516]
gi|167401077|ref|ZP_02306580.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|115347552|emb|CAL20461.1| flagellar biosynthetic protein FliP [Yersinia pestis CO92]
gi|167049466|gb|EDR60874.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
str. UG05-0454]
Length = 246
Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats.
Identities = 95/240 (39%), Positives = 145/240 (60%), Gaps = 4/240 (1%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
L L V A+ + + V+T T LS P L+M+T F R
Sbjct: 9 LGLLTLFCSPSVLAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRI 68
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
IIV +LR MG S PPN V++ LALF+TF++MSP D+ + P ++I+ A+
Sbjct: 69 IIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVAL 128
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+ ++P FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F
Sbjct: 129 DKGSQPLREFMLRQTRESDLALYARLANLP----PLEGPEMVPMRILLPAYVTSELKTAF 184
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 185 QIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 244
>gi|148266209|ref|YP_001232915.1| flagellar biosynthesis protein FliP [Geobacter uraniireducens Rf4]
gi|146399709|gb|ABQ28342.1| flagellar biosynthetic protein FliP [Geobacter uraniireducens Rf4]
Length = 251
Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats.
Identities = 95/249 (38%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPAD----LSISTWIVRTFGIFTILSIAPILL 56
+ + L ++T FA+ +++ + +++ F + T+LS+AP LL
Sbjct: 6 LFKTALILLCMLTAASAFAEPLALPTVSVGMGKVSKPADVAVVLQIFFLMTVLSLAPGLL 65
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
+M T F R ++V S LR +G P N +II L+LF+TF++M+P + +QP
Sbjct: 66 MMTTSFTRIVVVLSFLRNAIGTQQAPSNQIIIGLSLFLTFFIMAPVWQQINTQALQPYKA 125
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
I++ A +R P FM + REKDL+LF+ ++ D I LIP++
Sbjct: 126 QTISQEEAFKRAVAPVRKFMLSQVREKDLALFLSLSKLPRPK----NADDIPTLTLIPAY 181
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
M+SEL+ +F+IGFL+ +PFL++DM+VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L
Sbjct: 182 MVSELKTAFQIGFLVFIPFLVLDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGL 241
Query: 237 LVENLVKSF 245
++ +LVKSF
Sbjct: 242 VIGSLVKSF 250
>gi|301165896|emb|CBW25469.1| flagellar biosynthesis protein [Bacteriovorax marinus SJ]
Length = 252
Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats.
Identities = 94/234 (40%), Positives = 148/234 (63%), Gaps = 7/234 (2%)
Query: 15 ELVFAKS---SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
FA+S +L + + + ++ +FT+L++AP +LI+ TCF R I+V S
Sbjct: 22 SEAFAQSSGVNLPGMAINFGNGTNLVDTIQVLVLFTVLTMAPAILILCTCFTRIIVVLSF 81
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
+R +G S+PPN V+I ALF++ +VM PT ++ + I P + +IT T A+ R+
Sbjct: 82 MRQAIGTQSMPPNQVLIGFALFLSIFVMQPTGEQIYKNAITPYVEKKITTTVALDRIEFS 141
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
FM R+ D+ LF D+ NT + + LIP+F+ISEL+ +F+IGFL+
Sbjct: 142 LRGFMTKQVRKADIGLFYDVTGRKAPNT----INDVPIHFLIPAFIISELKTAFQIGFLL 197
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLI+DM+VA+++MAMGMMMLPP +SLPFK++ FVL+DGW L+ ++++SF
Sbjct: 198 YIPFLILDMVVASVLMAMGMMMLPPVVVSLPFKLLLFVLVDGWQLVTGSILRSF 251
>gi|326319061|ref|YP_004236733.1| flagellar biosynthetic protein FliP [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375897|gb|ADX48166.1| flagellar biosynthetic protein FliP [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 259
Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats.
Identities = 97/226 (42%), Positives = 142/226 (62%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SL ++ A + + ++T FT LS P LL+M+T F R +IV S++R +G S
Sbjct: 37 GSLPVLIGSGAGGASYSVPIQTLLFFTALSFLPALLLMMTGFTRIVIVLSLIRQAIGTQS 96
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN VII L+LF+TF+VM PT DR P NN IT A++R P FM T
Sbjct: 97 APPNQVIIGLSLFLTFFVMGPTFDRVYADAYLPYSNNTITFEQAVERAEAPMRSFMLKQT 156
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
R+ D +LF +A T + R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM
Sbjct: 157 RQSDFALFARLAKLPSGAT----AETAPMRVLVPAFVTSELKSAFQIGFMIFIPFLVIDM 212
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++I+M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF+
Sbjct: 213 VVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGSLAASFV 258
>gi|261340413|ref|ZP_05968271.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC
35316]
gi|288317505|gb|EFC56443.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC
35316]
Length = 245
Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats.
Identities = 95/241 (39%), Positives = 152/241 (63%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
A + V+A+ + + V+T T L+ P +L+M+T F R
Sbjct: 7 LTLAGLGLFAPAVYAQLPGLISTPMAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTR 66
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP ++I+ A
Sbjct: 67 IIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMEVA 126
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+++ A+P FM TRE DL+LF +A++ ++ + + RIL+P+++ SEL+ +
Sbjct: 127 LEKGAQPLREFMLRQTREADLALFARLANTG----ELQGPEAVPMRILLPAYVTSELKTA 182
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +S
Sbjct: 183 FQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLAQS 242
Query: 245 F 245
F
Sbjct: 243 F 243
>gi|319406982|emb|CBI80619.1| Flagellar biosynthetic protein fliP [Bartonella sp. 1-1C]
Length = 250
Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats.
Identities = 133/253 (52%), Positives = 187/253 (73%), Gaps = 11/253 (4%)
Query: 1 MIRY--CFFALFLVTPELVFAKSSLHDVMNIPAD------LSISTWIVRTFGIFTILSIA 52
M R+ +FL+ + FA+ + + + A SIS IV+ FG+ TILS+A
Sbjct: 1 MKRFGGFVLMIFLLATTVAFAQKTGAENASGLAGLFSYPQGSISGRIVQLFGLLTILSVA 60
Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
P LLIMVT F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+
Sbjct: 61 PGLLIMVTSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEDGVH 120
Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
PL+NN+I+E AI+++++PF FM + REKDL LF++++ SS + +++R+L
Sbjct: 121 PLVNNKISEQQAIEKISQPFREFMISQVREKDLDLFVNLSDSSL---QVKTGSDVDFRVL 177
Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVL+D
Sbjct: 178 VPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLVD 237
Query: 233 GWSLLVENLVKSF 245
GW+LLV +L++SF
Sbjct: 238 GWNLLVGSLIRSF 250
>gi|121612246|ref|YP_001000505.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
jejuni 81-176]
gi|30721657|gb|AAP34259.1| FliP [Campylobacter jejuni subsp. jejuni 81-176]
gi|87249412|gb|EAQ72372.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni 81-176]
Length = 244
Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats.
Identities = 103/226 (45%), Positives = 156/226 (69%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S
Sbjct: 22 PTVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQS 81
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN ++++LAL +TF++M P +S GI+P ++ +I A + A+PF FM NT
Sbjct: 82 MPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNT 141
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM
Sbjct: 142 REKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDM 197
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 198 VVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243
>gi|86152107|ref|ZP_01070319.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85840892|gb|EAQ58142.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni 260.94]
Length = 244
Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats.
Identities = 103/226 (45%), Positives = 155/226 (68%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S
Sbjct: 22 PTVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVITSFLRLIVVFSFLRQAMGTQS 81
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN ++++LAL +TF++M P +S GI+P + +I A + A+PF FM NT
Sbjct: 82 MPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNT 141
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM
Sbjct: 142 REKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDM 197
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 198 VVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243
>gi|57242347|ref|ZP_00370286.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis
RM3195]
gi|57017027|gb|EAL53809.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis
RM3195]
Length = 244
Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 104/243 (42%), Positives = 157/243 (64%), Gaps = 4/243 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ L +++ ++ P + + + TIL++AP ++ ++T F
Sbjct: 5 FLLILFALSVFGAEATIPTVNLSLSAPDTPNQLVTTLNIIIVLTILALAPSIIFIMTSFL 64
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R IIVFS LR MG S+PPN +++++AL +TF++M P +S G++P ++ QI
Sbjct: 65 RLIIVFSFLRQAMGTQSMPPNTILVTMALILTFFIMEPVATKSYNEGVKPYLSEQIGYEE 124
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A R A+PF FM NTREKDL+LF + + + T D + +L+P+FMISEL+
Sbjct: 125 AFVRGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT----IDDVPLSVLVPAFMISELKT 180
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+FEIGFLI LPFL+IDM+V++++MAMGMMMLPP ISLPFK++ FVL+DGW+LLV+ LV+
Sbjct: 181 AFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLVQRLVE 240
Query: 244 SFI 246
SF+
Sbjct: 241 SFV 243
>gi|153951658|ref|YP_001398263.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939104|gb|ABS43845.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
doylei 269.97]
Length = 244
Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats.
Identities = 103/226 (45%), Positives = 154/226 (68%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S
Sbjct: 22 PTINLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQS 81
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN ++++LAL +TF++M P +S GI+P + QI A + +PF FM NT
Sbjct: 82 MPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEQIGYEEAFIKGTKPFKDFMLKNT 141
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM
Sbjct: 142 REKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDM 197
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 198 VVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243
>gi|330861094|emb|CBX71361.1| flagellar biosynthetic protein fliP [Yersinia enterocolitica
W22703]
Length = 237
Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats.
Identities = 93/239 (38%), Positives = 145/239 (60%), Gaps = 4/239 (1%)
Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
L L+ A+ + + V+T T LS P L+M+T F R I
Sbjct: 1 MLLALLCSPAAMAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRII 60
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IV +LR +G S PPN V++ LALF+TF++MSP D+ + P ++I+ A+
Sbjct: 61 IVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMD 120
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
+ ++P FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+
Sbjct: 121 KGSQPLREFMLRQTRESDLALYARLANLP----PLEGPEVVPLRILLPAYVTSELKTAFQ 176
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 177 IGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 235
>gi|171316887|ref|ZP_02906096.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5]
gi|171097968|gb|EDT42786.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5]
Length = 253
Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats.
Identities = 95/241 (39%), Positives = 146/241 (60%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A + P + + V+T + T+LS P +L+M+T F R
Sbjct: 16 LILGLAPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + + A
Sbjct: 76 IIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPFSDGSMPMEQA 135
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
++R PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+
Sbjct: 136 VRRGVAPFKTFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTG 191
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQS 251
Query: 245 F 245
F
Sbjct: 252 F 252
>gi|90418387|ref|ZP_01226299.1| flagellar biosynthetic protein fliP [Aurantimonas manganoxydans
SI85-9A1]
gi|90338059|gb|EAS51710.1| flagellar biosynthetic protein fliP [Aurantimonas manganoxydans
SI85-9A1]
Length = 257
Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats.
Identities = 128/240 (53%), Positives = 166/240 (69%), Gaps = 6/240 (2%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
+ + + D + S IV+ FGI TILSIAP LL+MVT F R +I SI
Sbjct: 17 LAQTAQTSGLPDLAALLPAGDSTASGRIVQLFGIVTILSIAPGLLVMVTSFTRIVIALSI 76
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LRTG+G+ + P NL++ISL+LFMTF+VM+PT DR+ G+QPL+NN+ITE A R++EP
Sbjct: 77 LRTGLGLQTTPANLILISLSLFMTFFVMAPTFDRAWNDGLQPLLNNEITEEEAFYRISEP 136
Query: 132 FWVFMRNNTREKDLSLFMDMA------HSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
F FM R +DL+LF D+A ++ R LIP+FMISELRR F
Sbjct: 137 FKDFMLTQVRPEDLTLFGDIAAATSRERVEPEEQGAADERDVDLRELIPAFMISELRRGF 196
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
EIGFLI+LPFL+IDMIVAT+ M+MGMMMLPPT ISLPFK++FF+LIDGW++LV +LV+SF
Sbjct: 197 EIGFLIVLPFLVIDMIVATLTMSMGMMMLPPTIISLPFKILFFILIDGWNMLVGSLVRSF 256
>gi|167585022|ref|ZP_02377410.1| flagellar biosynthesis protein FliP [Burkholderia ubonensis Bu]
Length = 253
Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats.
Identities = 96/241 (39%), Positives = 146/241 (60%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A + P + + V+T + T+LS P +L+M+T F R
Sbjct: 16 LILGLAPALACAQAAGLPAFNAAPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G S PPN V++ LA+F+TF+VMSP LDR+ G +P + + A
Sbjct: 76 IIIVLSLLRQALGTSSTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSVPMEQA 135
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+QR PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+
Sbjct: 136 VQRGVAPFKGFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTG 191
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FV++DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVVVDGWQLLLGSLAQS 251
Query: 245 F 245
F
Sbjct: 252 F 252
>gi|115350085|ref|YP_771924.1| flagellar biosynthesis protein FliP [Burkholderia ambifaria AMMD]
gi|115280073|gb|ABI85590.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria AMMD]
Length = 253
Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats.
Identities = 95/241 (39%), Positives = 146/241 (60%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A + P + + V+T + T+LS P +L+M+T F R
Sbjct: 16 LILGLAPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + + A
Sbjct: 76 IIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPFSDGSMPMEQA 135
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
++R PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+
Sbjct: 136 VRRGVAPFKTFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTG 191
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQS 251
Query: 245 F 245
F
Sbjct: 252 F 252
>gi|269965693|ref|ZP_06179806.1| Flagellar biosynthetic protein fliP [Vibrio alginolyticus 40B]
gi|269829761|gb|EEZ83997.1| Flagellar biosynthetic protein fliP [Vibrio alginolyticus 40B]
Length = 289
Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 136/224 (60%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 69 PAFTMTTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 128
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF+VMSP L+ + +QP +N Q+T A P FM TR
Sbjct: 129 PSNQVIIGIALFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTR 188
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F+ M+ + + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 189 IKDLETFVTMSG-----EQVEDPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 243
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 244 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287
>gi|254228442|ref|ZP_04921868.1| flagellar biosynthetic protein FliP, putative [Vibrio sp. Ex25]
gi|262393598|ref|YP_003285452.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25]
gi|151939030|gb|EDN57862.1| flagellar biosynthetic protein FliP, putative [Vibrio sp. Ex25]
gi|262337192|gb|ACY50987.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25]
Length = 289
Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 136/224 (60%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 69 PAFTMTTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 128
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF+VMSP L+ + +QP +N Q+T A P FM TR
Sbjct: 129 PSNQVIIGIALFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTR 188
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F+ M+ + + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 189 IKDLETFVTMSG-----EQVENPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 243
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 244 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287
>gi|57237661|ref|YP_178909.1| flagellar biosynthesis protein FliP [Campylobacter jejuni RM1221]
gi|86150212|ref|ZP_01068439.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|86153364|ref|ZP_01071568.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|88597515|ref|ZP_01100749.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni 84-25]
gi|157415087|ref|YP_001482343.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
jejuni 81116]
gi|218562448|ref|YP_002344227.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|57166465|gb|AAW35244.1| flagellar biosynthetic protein FliP [Campylobacter jejuni RM1221]
gi|85839328|gb|EAQ56590.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|85843090|gb|EAQ60301.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|88190107|gb|EAQ94082.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112360154|emb|CAL34948.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|157386051|gb|ABV52366.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
81116]
gi|284926065|gb|ADC28417.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni IA3902]
gi|307747729|gb|ADN90999.1| Flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni M1]
gi|315058270|gb|ADT72599.1| Flagellar biosynthesis protein fliP [Campylobacter jejuni subsp.
jejuni S3]
gi|315930473|gb|EFV09528.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni 305]
gi|315931173|gb|EFV10146.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni 327]
Length = 244
Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats.
Identities = 103/226 (45%), Positives = 155/226 (68%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S
Sbjct: 22 PTVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQS 81
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN ++++LAL +TF++M P +S GI+P + +I A + A+PF FM NT
Sbjct: 82 MPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNT 141
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM
Sbjct: 142 REKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDM 197
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 198 VVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243
>gi|170694404|ref|ZP_02885558.1| flagellar biosynthetic protein FliP [Burkholderia graminis C4D1M]
gi|170140827|gb|EDT09001.1| flagellar biosynthetic protein FliP [Burkholderia graminis C4D1M]
Length = 284
Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats.
Identities = 102/248 (41%), Positives = 154/248 (62%), Gaps = 7/248 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIM 58
+ A+ L P L FA+++ N P + + V+T + T+LS P +++M
Sbjct: 41 LPVVLPAIMLALPTLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLM 100
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R IIV S+LR +G + PPN V++ LALF+T +VMSP LD++ G +P
Sbjct: 101 MTSFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGT 160
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+ TA+ R PF FM TRE DL+LF ++H + + + +L+PSF+
Sbjct: 161 VPMETAVSRGLAPFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVT 216
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+
Sbjct: 217 SELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLL 276
Query: 239 ENLVKSFI 246
+L +SF+
Sbjct: 277 GSLAQSFV 284
>gi|167813515|ref|ZP_02445195.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 91]
gi|167822057|ref|ZP_02453528.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 9]
gi|167843670|ref|ZP_02469178.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
B7210]
gi|167892141|ref|ZP_02479543.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
7894]
gi|167900653|ref|ZP_02487858.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei NCTC
13177]
gi|167908873|ref|ZP_02495964.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 112]
gi|167916912|ref|ZP_02504003.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
BCC215]
Length = 253
Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats.
Identities = 96/241 (39%), Positives = 142/241 (58%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A + P + + V+T + T+LS P +L+M+T F R
Sbjct: 16 ILIGLAPALACAQAAGLPAFNSAPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G S PPN V++ LALF+T +VMSP LDR+ +P + A
Sbjct: 76 IIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQA 135
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+QR PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+
Sbjct: 136 VQRGTAPFKAFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTG 191
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 251
Query: 245 F 245
F
Sbjct: 252 F 252
>gi|91223555|ref|ZP_01258820.1| flagellar biosynthesis protein P [Vibrio alginolyticus 12G01]
gi|91191641|gb|EAS77905.1| flagellar biosynthesis protein P [Vibrio alginolyticus 12G01]
Length = 289
Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 136/224 (60%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 69 PAFTMTTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 128
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF+VMSP L+ + +QP +N Q+T A P FM TR
Sbjct: 129 PSNQVIIGIALFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTR 188
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F+ M+ + + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 189 IKDLETFVTMSG-----EQVENPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 243
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 244 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287
>gi|241763645|ref|ZP_04761695.1| flagellar biosynthetic protein FliP [Acidovorax delafieldii 2AN]
gi|241367120|gb|EER61486.1| flagellar biosynthetic protein FliP [Acidovorax delafieldii 2AN]
Length = 263
Score = 211 bits (536), Expect = 9e-53, Method: Composition-based stats.
Identities = 93/240 (38%), Positives = 144/240 (60%), Gaps = 4/240 (1%)
Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
+ P + SL ++ + + ++T FT LS P +L+M+T F R +
Sbjct: 27 ALAMVHLPAAAQSAGSLPLLVGSGNSGTSFSVPIQTLLFFTALSFLPAVLLMMTGFTRIV 86
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IV S+LR +G S PPN VII L+LF+TF+VM PTLD+ + P N I+ A++
Sbjct: 87 IVLSLLRQALGTQSAPPNQVIIGLSLFLTFFVMGPTLDKVYQDAYLPYTTNTISFEAALE 146
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
+ P FM TR+ D +LF +A + R+L+P+F+ SEL+ +F+
Sbjct: 147 KAEAPMRSFMLKQTRQSDFALFSRLAKL----DVSVTAETAPLRVLVPAFVTSELKSAFQ 202
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
IGF+I +PFL+IDM+V++I+M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF+
Sbjct: 203 IGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASFV 262
>gi|188579766|ref|YP_001923211.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001]
gi|179343264|gb|ACB78676.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001]
Length = 253
Score = 211 bits (536), Expect = 9e-53, Method: Composition-based stats.
Identities = 104/232 (44%), Positives = 157/232 (67%), Gaps = 8/232 (3%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
A+S D+ + ++ + T+L++AP +L+M T F R ++V SILR
Sbjct: 28 SGAALAQSVTLDL----GAGGTTERALQLVALITVLALAPSVLVMATSFTRIVVVLSILR 83
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+ +G + PPN V++SLALF+T +VM+PT + G++PL+ QI+++ A +R + PF
Sbjct: 84 SALGTQTAPPNTVMVSLALFLTAFVMAPTAREAYRAGVEPLVAGQISQSQAFERASAPFK 143
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM N REKDL LF+DMA + I I+ P+FMISELRR+FEIGFL+ +
Sbjct: 144 TFMLRNVREKDLKLFLDMARQPAP----AGPEAIGLEIVTPAFMISELRRAFEIGFLLFI 199
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFLIID++VA+++MAMGMMMLPP +++LPFK+IFFVL+DGW+L+ +L++S+
Sbjct: 200 PFLIIDLVVASVLMAMGMMMLPPATVALPFKLIFFVLVDGWTLVAGSLIQSY 251
>gi|163856448|ref|YP_001630746.1| flagellar biosynthesis protein FliP [Bordetella petrii DSM 12804]
gi|163260176|emb|CAP42478.1| flagellar biosynthesis protein FliP [Bordetella petrii]
Length = 262
Score = 211 bits (536), Expect = 9e-53, Method: Composition-based stats.
Identities = 99/235 (42%), Positives = 147/235 (62%), Gaps = 6/235 (2%)
Query: 13 TPELVFAKSSLHDVMNIPADLS--ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
P V A+++L + P + ++T + T LS P L+M+T F R IIV
Sbjct: 30 FPAGVVAQATLPALTATPGPGGAQTYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLG 89
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
+LR+ +G PPN V+I LALF+TFY MSP DR +PL I TA++R A
Sbjct: 90 LLRSALGTAMSPPNHVLIGLALFLTFYTMSPVFDRIYSEAYKPLSEGSIPFETAVERAAA 149
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM + TRE DL+LF ++A+ + + +IL+P+F+ SEL+ +F+IGF
Sbjct: 150 PLHTFMLHQTRENDLTLFANLANQP----ALEDPSQVPMKILVPAFITSELKTAFQIGFT 205
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L SF
Sbjct: 206 IFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLLGSLASSF 260
>gi|242238991|ref|YP_002987172.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech703]
gi|242131048|gb|ACS85350.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech703]
Length = 254
Score = 211 bits (536), Expect = 9e-53, Method: Composition-based stats.
Identities = 97/243 (39%), Positives = 154/243 (63%), Gaps = 4/243 (1%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
R F L + +A+ + + V+T + T L+ P +L+M+T F
Sbjct: 14 RSFFTILIVFFAPNSWAQLPGIISQPLANGAQSWSLPVQTLVLLTSLTFIPAVLLMMTSF 73
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R IIV +LR+ +G + PPN ++I L+LF+TF++MSP L + + QP N+I
Sbjct: 74 TRIIIVLGLLRSALGTPTAPPNQILIGLSLFLTFFIMSPVLTKVYQDAYQPFSENKINME 133
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
TAI+R ++P FM TRE DL+LF +A + ++ + + R+L+P+F+ SEL+
Sbjct: 134 TAIERGSQPLRQFMLRQTRETDLALFARLAEI----SALSGPEAVPMRVLVPAFVTSELK 189
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW LL+ +LV
Sbjct: 190 TAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLSSLV 249
Query: 243 KSF 245
+SF
Sbjct: 250 QSF 252
>gi|312884901|ref|ZP_07744591.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367378|gb|EFP94940.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 290
Score = 211 bits (536), Expect = 9e-53, Method: Composition-based stats.
Identities = 92/233 (39%), Positives = 139/233 (59%), Gaps = 5/233 (2%)
Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
+ P T ++ + T+L P ++I++T F R ++V SIL
Sbjct: 61 ASSSGGGGIPAFTMTTNPDGSEDYTINLQILALMTMLGFLPAMVILMTSFTRIVVVMSIL 120
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R MG+ P N VI+ +A+F+TF++MSP L++ E IQP +N QIT A P
Sbjct: 121 RQAMGLQQTPSNQVIVGIAIFLTFFIMSPVLNKINEDAIQPYINEQITARKAFDLAQIPM 180
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
FM TR KDL F++++ S+ T + +LIP+F+ SEL+ +F+IGF++
Sbjct: 181 RDFMLKQTRVKDLETFVNISGST-----ATATSDVSMAVLIPAFITSELKTAFQIGFMLF 235
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LPFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 236 LPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 288
>gi|148926523|ref|ZP_01810205.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|145845217|gb|EDK22311.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
CG8486]
Length = 244
Score = 211 bits (536), Expect = 9e-53, Method: Composition-based stats.
Identities = 103/226 (45%), Positives = 155/226 (68%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S
Sbjct: 22 PTVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQS 81
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN ++++LAL +TF++M P +S GI+P + +I A + A+PF FM NT
Sbjct: 82 MPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNT 141
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM
Sbjct: 142 REKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDM 197
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 198 VVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243
>gi|261821163|ref|YP_003259269.1| flagellar biosynthesis protein FliP [Pectobacterium wasabiae
WPP163]
gi|261605176|gb|ACX87662.1| flagellar biosynthetic protein FliP [Pectobacterium wasabiae
WPP163]
Length = 258
Score = 211 bits (536), Expect = 9e-53, Method: Composition-based stats.
Identities = 104/244 (42%), Positives = 151/244 (61%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+RY L V+A+ +P T V+T T L+ P L+M+T
Sbjct: 17 LRYSLAISLLFMAPSVWAQLPGIVTQPLPNGGQSWTLPVQTLVFLTSLTFIPAALLMMTS 76
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIV S+LR +G + PPN V++ L LF+TF+VMSP L+R E P +QI+
Sbjct: 77 FTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYEEAYLPFSQDQISM 136
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
AI+R AEP FM TRE DL+LF +A +I + + R+L+P+F+ SEL
Sbjct: 137 EVAIERGAEPVREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSEL 192
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L
Sbjct: 193 KTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL 252
Query: 242 VKSF 245
+SF
Sbjct: 253 AQSF 256
>gi|290475714|ref|YP_003468603.1| flagellar biosynthesis protein [Xenorhabdus bovienii SS-2004]
gi|289175036|emb|CBJ81839.1| flagellar biosynthesis [Xenorhabdus bovienii SS-2004]
Length = 269
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 93/233 (39%), Positives = 139/233 (59%), Gaps = 4/233 (1%)
Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
P A + + V+T T L P L+M+T F R IIV +L
Sbjct: 39 FPMNAAAALPGIISQPMANGGQSWSLPVQTLVFITALGFIPAALLMMTSFTRIIIVLGLL 98
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R +G S PPN ++I LALFMTF++MSP D+ + P ++I+ A+ + A+P
Sbjct: 99 RNALGTPSAPPNQIMIGLALFMTFFIMSPVFDKVYQDAYLPFSEDKISLEAALDKGAQPL 158
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
FM TR+ DL+LF +A D + R+L+P+F+ SEL+ +F+IGF +
Sbjct: 159 RQFMLRQTRQTDLALFARLA----DQDAFETADSVPIRVLVPAFITSELKTAFQIGFTLF 214
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 215 IPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 267
>gi|167005441|ref|ZP_02271199.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
jejuni 81-176]
Length = 244
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 102/226 (45%), Positives = 155/226 (68%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S
Sbjct: 22 PTVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQS 81
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN ++++LAL +TF++M P +S GI+P ++ +I A + A+PF FM NT
Sbjct: 82 MPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNT 141
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI PFL+IDM
Sbjct: 142 REKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYQPFLVIDM 197
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 198 VVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243
>gi|315638458|ref|ZP_07893635.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis
JV21]
gi|315481449|gb|EFU72076.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis
JV21]
Length = 244
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 103/243 (42%), Positives = 156/243 (64%), Gaps = 4/243 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ L +++ ++ P + + + TIL++AP ++ ++T F
Sbjct: 5 FLLILFALSVFGAEATIPTVNLSLSAPDTPNQLVTTLNIIIVLTILALAPSIIFIMTSFL 64
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R IIVFS LR MG S+PPN +++++AL +TF++M P +S G++P ++ QI
Sbjct: 65 RLIIVFSFLRQAMGTQSMPPNTILVTMALILTFFIMEPVATKSYNEGVKPYLSEQIGYEE 124
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A R +PF FM NTREKDL+LF + + + T D + +L+P+FMISEL+
Sbjct: 125 AFVRGVKPFKDFMLKNTREKDLALFYRIRNLPNPKT----IDDVPLSVLVPAFMISELKT 180
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+FEIGFLI LPFL+IDM+V++++MAMGMMMLPP ISLPFK++ FVL+DGW+LLV+ LV+
Sbjct: 181 AFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLVQRLVE 240
Query: 244 SFI 246
SF+
Sbjct: 241 SFV 243
>gi|253702494|ref|YP_003023683.1| flagellar biosynthesis protein FliP [Geobacter sp. M21]
gi|251777344|gb|ACT19925.1| flagellar biosynthetic protein FliP [Geobacter sp. M21]
Length = 247
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 93/235 (39%), Positives = 150/235 (63%), Gaps = 8/235 (3%)
Query: 15 ELVFAKSSLHDVMNIPAD----LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
A+ +++ + + +++ F + T++S+AP LL+M T F R ++V S
Sbjct: 16 GTALAEPLSIPTVSVGVGKVTKPADVSVVLQIFFLMTVISLAPSLLMMTTSFTRIVVVLS 75
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
LR+ +G P N ++I L+LF+TF++M+P + +QP +QIT+ A++R
Sbjct: 76 FLRSALGTQQAPSNQIVIGLSLFLTFFIMAPVWQQVNANALQPYRASQITQEEAVKRGVA 135
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM + REKDL+LF++++ D I LIP++M+SEL+ +F+IGFL
Sbjct: 136 PLRKFMLSQVREKDLALFINLSKLPRPK----NADDIPTLTLIPAYMVSELKTAFQIGFL 191
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I +PFL++DM+VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 192 IFIPFLVLDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 246
>gi|319403967|emb|CBI77555.1| Flagellar biosynthetic protein fliP [Bartonella rochalimae ATCC
BAA-1498]
Length = 250
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 133/247 (53%), Positives = 185/247 (74%), Gaps = 9/247 (3%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPAD------LSISTWIVRTFGIFTILSIAPILLIM 58
+FL+ + FA+ + + + A SIS IV+ FG+ TILS+AP LLIM
Sbjct: 7 FVLMIFLLATTVAFAQKTGAENASGIAGLFSYPEGSISGRIVQLFGLLTILSVAPGLLIM 66
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
VT F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+QPL+NN+
Sbjct: 67 VTSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEEGVQPLVNNK 126
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
I+E AI+++++PF FM + REKDL LF++++ SS + I++R+L+P+FMI
Sbjct: 127 ISEQQAIEKISQPFREFMISQVREKDLDLFVNLSDSSL---QVKTGSDIDFRVLVPAFMI 183
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVL+DGW+LLV
Sbjct: 184 SELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLVDGWNLLV 243
Query: 239 ENLVKSF 245
+L++SF
Sbjct: 244 GSLIRSF 250
>gi|332531133|ref|ZP_08407047.1| flagellar biosynthesis protein FliP [Hylemonella gracilis ATCC
19624]
gi|332039418|gb|EGI75830.1| flagellar biosynthesis protein FliP [Hylemonella gracilis ATCC
19624]
Length = 267
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 96/224 (42%), Positives = 140/224 (62%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
SL + + + ++T FT LS P +L+M+T F R +IV S+LR +G S
Sbjct: 46 SLPLLTASNRGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQALGTQSA 105
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN VII L+LF+TF+VM PT DR QP N +T A+ R P FM TR
Sbjct: 106 PPNQVIIGLSLFLTFFVMGPTFDRVYAEAYQPYTRNALTFEQAVDRAEVPVREFMSKQTR 165
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+ DL+LF+ ++ T ++ R+LIP+F+ SEL+ +F+ GFLI +PFL+IDM+
Sbjct: 166 QSDLALFVRLSKL----DAATTAENAPMRVLIPAFVTSELKTAFQFGFLIFIPFLVIDMV 221
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF
Sbjct: 222 VASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 265
>gi|283957192|ref|ZP_06374656.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni 1336]
gi|283791368|gb|EFC30173.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni 1336]
Length = 244
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 102/226 (45%), Positives = 154/226 (68%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S
Sbjct: 22 PTVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQS 81
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN ++++LAL +TF++M P +S GI+P + +I A + +PF FM NT
Sbjct: 82 MPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGVKPFKDFMLKNT 141
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM
Sbjct: 142 REKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDM 197
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 198 VVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243
>gi|118581840|ref|YP_903090.1| flagellar biosynthesis protein FliP [Pelobacter propionicus DSM
2379]
gi|118504550|gb|ABL01033.1| flagellar biosynthetic protein FliP [Pelobacter propionicus DSM
2379]
Length = 257
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 103/225 (45%), Positives = 145/225 (64%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SL + T ++ F + TILS+AP LLIM T F R ++V S LRT MG
Sbjct: 36 PSLSIGVGTATKPGEFTTTIQIFFLLTILSLAPGLLIMTTAFTRIVVVLSFLRTAMGTQG 95
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P N VI+ L++F+TF++MSP + QP QI++T AI R P FM + T
Sbjct: 96 APSNQVILGLSMFLTFFIMSPVWQQINNEAYQPWKAQQISQTIAIDRAIMPVRRFMLSQT 155
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF+ +++ + I +IP+FMISELR +F+IGFLI +PF+++DM
Sbjct: 156 REKDLALFVSLSNLPRPK----NANDIPTLTIIPAFMISELRTAFQIGFLIYIPFIVVDM 211
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 212 VVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGLVISSLVKSF 256
>gi|323705431|ref|ZP_08117006.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535333|gb|EGB25109.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 249
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 96/246 (39%), Positives = 156/246 (63%), Gaps = 8/246 (3%)
Query: 3 RYCFFALFLVTPELVFAKSS---LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
+ L ++ + +A + +N P+ + ++ + T+L++AP +LIM+
Sbjct: 8 SWLVLVLPILLTQNAYAAPNNASSLITVNAPSTSNEVASSIQIVLLLTVLTLAPSILIMM 67
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R I+V S LR +G+ +PPN V+I LALF+TF++M+P + + IQP M +I
Sbjct: 68 TSFTRIIVVLSFLRNALGLQQMPPNQVLIGLALFLTFFIMAPVGSQINKDSIQPYMQGKI 127
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
T A + +P FM TR+ DL+LF++++ + + + R++IPSF+IS
Sbjct: 128 TPQEAYVKARDPLKNFMLKQTRKNDLNLFINLSKLK-----VKSVNDVPLRVVIPSFIIS 182
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +FEIGF+I +PFLIIDM+VA+++M+MGM MLPP ISLPFK++ F+L+DGW++L +
Sbjct: 183 ELKTAFEIGFIIYIPFLIIDMVVASVLMSMGMFMLPPVLISLPFKLLLFILVDGWNILAK 242
Query: 240 NLVKSF 245
+LV F
Sbjct: 243 SLVIGF 248
>gi|332284032|ref|YP_004415943.1| flagellar biosynthesis protein FliP [Pusillimonas sp. T7-7]
gi|330427985|gb|AEC19319.1| flagellar biosynthesis protein FliP [Pusillimonas sp. T7-7]
Length = 257
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 99/235 (42%), Positives = 154/235 (65%), Gaps = 6/235 (2%)
Query: 13 TPELVFAKSSLHDVMN--IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
P + A+++L + + P + ++T + T++S P +L+M+T F R IIV
Sbjct: 25 WPAMGLAQTTLPALTSAVNPDGSQTWSLSIQTLVLLTMMSFLPAMLMMMTGFTRIIIVLG 84
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
+LR MG G+ PPN ++I LALF+TF+ MSP D+ QPL N I A++R +
Sbjct: 85 LLRNAMGTGASPPNSILIGLALFLTFFAMSPVFDQIYADAYQPLSNGVIAFEEALERGIK 144
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM + TRE DL++F +MA+ + ++ + + R+L+P+FM SEL+ +F+IGF
Sbjct: 145 PLHSFMLHQTREADLTMFANMANVA----ELQTAEEVPLRVLVPAFMASELKTAFQIGFT 200
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL DGW LL+ +L +SF
Sbjct: 201 IFIPFLIIDLVVASVLMALGMMMVPPVTISLPFKLMLFVLADGWHLLLGSLARSF 255
>gi|220925383|ref|YP_002500685.1| flagellar biosynthetic protein FliP [Methylobacterium nodulans ORS
2060]
gi|219949990|gb|ACL60382.1| flagellar biosynthetic protein FliP [Methylobacterium nodulans ORS
2060]
Length = 251
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 105/242 (43%), Positives = 163/242 (67%), Gaps = 7/242 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ + + + A+S +++ ++ ++ + T+L++AP +L+M T F
Sbjct: 15 WLAGLVLVASASGALAQSV---TVDLGPSGGVTERALQLVALITVLALAPSVLVMATSFT 71
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R ++V SILR+ +G + PPN VI+SLALF+T +VM+PT + GI+PL+ QI ++
Sbjct: 72 RIVVVLSILRSALGTQTAPPNAVIVSLALFLTAFVMAPTARDAYRAGIEPLVAGQIQQSQ 131
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +R A PF FM REKDL LF+D+A + T + + IL P+FMISELRR
Sbjct: 132 AFERAAAPFKAFMLRTVREKDLQLFLDLAKAPRPAT----PEAVGLEILTPAFMISELRR 187
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+FEIGFL+ +PFLIID++VA+I+M++GMMMLPP +++LPFK+IFFVL+DGW+L+ +LV+
Sbjct: 188 AFEIGFLLFIPFLIIDLVVASILMSVGMMMLPPATVALPFKLIFFVLVDGWTLVAGSLVQ 247
Query: 244 SF 245
S+
Sbjct: 248 SY 249
>gi|158320529|ref|YP_001513036.1| flagellar biosynthetic protein FliP [Alkaliphilus oremlandii
OhILAs]
gi|158140728|gb|ABW19040.1| flagellar biosynthetic protein FliP [Alkaliphilus oremlandii
OhILAs]
Length = 269
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 95/250 (38%), Positives = 160/250 (64%), Gaps = 7/250 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSS-----LHDVMNIPADLSISTWIVRTFGIFTILSIAPIL 55
M + ++ FA+ + L ++ + + ++ + TILS+AP +
Sbjct: 21 MACFIIICFIVLGSNQAFAQPNITVPNLQLSIDGASSPEETVNSLQLLSLLTILSLAPAI 80
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
LIMVT F R IIV S LR + PP V+I LALF+TF++M+P + +QP +
Sbjct: 81 LIMVTSFTRIIIVLSFLRNALATQQTPPTQVLIGLALFLTFFIMAPVASEINQNALQPFL 140
Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
N +IT+ A++ +P FM TREKDL+LF++ ++S ++ + + I+ LIP+
Sbjct: 141 NQEITQQQAVEEAMDPLREFMFRQTREKDLALFIEASNSE--VSENFQVEDIKTTTLIPA 198
Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
F+ISEL+ +F++GF++ +PF+++DM+VA+++M+MGMMMLPP ISLPFK++ FV++DGW+
Sbjct: 199 FIISELKTAFQMGFVLFIPFIVLDMVVASVLMSMGMMMLPPAMISLPFKLMLFVMVDGWN 258
Query: 236 LLVENLVKSF 245
+L+++L+ SF
Sbjct: 259 VLIKSLLLSF 268
>gi|222112240|ref|YP_002554504.1| flagellar biosynthesis protein flip [Acidovorax ebreus TPSY]
gi|221731684|gb|ACM34504.1| flagellar biosynthetic protein FliP [Acidovorax ebreus TPSY]
Length = 251
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 95/227 (41%), Positives = 140/227 (61%), Gaps = 4/227 (1%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
+L V+ + + ++T FT LS P +L+M+T F R +IV S+LR +G
Sbjct: 27 PAGALPLVIGSGPGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGT 86
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
S PPN VII L+LF+T +VM PTLD+ + P N IT AIQR P FM
Sbjct: 87 QSAPPNQVIIGLSLFLTLFVMGPTLDKVYQEAYVPYTTNAITFEQAIQRAEAPMRGFMLK 146
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
TR+ D +LF +A + + R+L+P+F+ SEL+ +F+IGF+I +PFLII
Sbjct: 147 QTRQSDFALFARLAKL----DEGVTAETAPLRVLVPAFVTSELKSAFQIGFMIFIPFLII 202
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
DM+V++++M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF
Sbjct: 203 DMVVSSVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 249
>gi|163789635|ref|ZP_02184073.1| flagellar biosynthesis protein P [Carnobacterium sp. AT7]
gi|159875167|gb|EDP69233.1| flagellar biosynthesis protein P [Carnobacterium sp. AT7]
Length = 254
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 93/245 (37%), Positives = 148/245 (60%), Gaps = 8/245 (3%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPA----DLSISTWIVRTFGIFTILSIAPILLIMVT 60
F F++ P++ A + I ++ +V+ F + T LS+AP L++ T
Sbjct: 13 LFLTSFVLFPQVASAAELTDGLDGITDLFGKQSGGTSEVVQLFLLTTALSLAPTFLVLTT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CF R I+V S +R+ +G PPNLV++ +ALF++ ++M P ++ I P +N +I+
Sbjct: 73 CFTRIIVVLSFVRSSLGTQQNPPNLVLMGIALFLSLFIMQPVYTDVMDEAITPYINEEIS 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A + P FM TR++D+ LF+D++ + + + + IP+F+ISE
Sbjct: 133 GIEAFELAELPIKEFMYKQTRDEDIQLFLDISKTEKP----ADVNDLPLTVAIPAFIISE 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LR +F IGFLI +PFL+ID++VA+I+M+MGM ML P ISLPFK++ FVL+DGW L+VE+
Sbjct: 189 LRTAFTIGFLIFIPFLVIDIVVASILMSMGMFMLSPVMISLPFKLLLFVLVDGWYLVVES 248
Query: 241 LVKSF 245
LV F
Sbjct: 249 LVTGF 253
>gi|319409181|emb|CBI82825.1| Flagellar biosynthetic protein fliP [Bartonella schoenbuchensis R1]
Length = 253
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 131/248 (52%), Positives = 181/248 (72%), Gaps = 9/248 (3%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNI------PADLSISTWIVRTFGIFTILSIAPILLI 57
+ L VFA+ + P D IS IV+ FG+ T+LS+AP LLI
Sbjct: 9 FMMLLLVTTDATDVFAQQTNLASTGGLSGLLAPTDGKISGRIVQLFGLLTVLSVAPGLLI 68
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
MVT F RF+I FS+LR+G+G+ + P NLV+ISLALFMTFYVM+PT + + E G+QPL+ N
Sbjct: 69 MVTSFTRFVIAFSLLRSGLGLQTTPSNLVMISLALFMTFYVMAPTFNTAWEQGVQPLIKN 128
Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
+I+E AI+++++PF FM + REKDL LF+D++ + ++ I++R+L+P+FM
Sbjct: 129 EISEQKAIEKISQPFREFMISQVREKDLDLFVDLSD---PSFNVKTGADIDFRVLVPAFM 185
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
ISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LL
Sbjct: 186 ISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNLL 245
Query: 238 VENLVKSF 245
V +L++SF
Sbjct: 246 VGSLIRSF 253
>gi|90579937|ref|ZP_01235745.1| flagellar biosynthesis protein [Vibrio angustum S14]
gi|90438822|gb|EAS64005.1| flagellar biosynthesis protein [Vibrio angustum S14]
Length = 282
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 94/224 (41%), Positives = 139/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
V P + ++ + T L P ++I++T F R ++V SILR MG+
Sbjct: 62 PALSVTVNPDGSEDYSVTLQILALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 121
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF+VMSP +D+ +QP +N QIT A+ + +P FM TR
Sbjct: 122 PSNQVIIGIALFLTFFVMSPVIDKINANAVQPYINEQITAKEALAKAEDPMRQFMLKQTR 181
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ S+ + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 182 VKDLETFVNMSGST-----ADDPQTVPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 236
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 237 VASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 280
>gi|189426339|ref|YP_001953516.1| flagellar biosynthesis protein FliP [Geobacter lovleyi SZ]
gi|189422598|gb|ACD96996.1| flagellar biosynthetic protein FliP [Geobacter lovleyi SZ]
Length = 256
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 148/245 (60%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + SL+ + + ++ F + T+LS+AP LLIM T
Sbjct: 15 LLAAVIAGSVAIAAAAPVPLPSLNIGVGTATKPAEVATTIQIFLLLTVLSLAPSLLIMTT 74
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R ++V S LRT +G P N +I++L+LF+TF++M+P + QP ++
Sbjct: 75 SFTRIVVVLSFLRTALGTQQAPSNQIILALSLFLTFFIMTPVWQQVNRDAYQPYKAGTLS 134
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A ++ +P FM + TREKDL LF+ ++ + D I ++P+FMISE
Sbjct: 135 QEQAFEKAVQPVRKFMLSQTREKDLGLFVSLSKQARPK----NADDIPTLTIVPAFMISE 190
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LR +F+IGFLI +PF+++DM+VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L++ +
Sbjct: 191 LRTAFQIGFLIYIPFIVVDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGLVISS 250
Query: 241 LVKSF 245
LVKSF
Sbjct: 251 LVKSF 255
>gi|220932509|ref|YP_002509417.1| flagellar biosynthetic protein FliP [Halothermothrix orenii H 168]
gi|219993819|gb|ACL70422.1| flagellar biosynthetic protein FliP [Halothermothrix orenii H 168]
Length = 254
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 104/245 (42%), Positives = 151/245 (61%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I + E +L + PA+ +R + T+LS+AP LL+MVT
Sbjct: 13 IILTGILSCKAGAVEFQLPDINLQINGSNPAEGEDLVLSLRILLLLTVLSLAPALLVMVT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R I+V ++R + +PPN V+I LALF+T ++M+P E +QP +NN+IT
Sbjct: 73 SFTRVIVVLGLIRQALATRRMPPNQVLIGLALFLTVFIMAPVWQDINEQALQPYLNNEIT 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A R +P FM TREKDL+LF++M I +LIP+F+ISE
Sbjct: 133 TQQAYDRGIKPIRDFMFKQTREKDLALFVNMTGIERPENRA----DIPTYVLIPAFVISE 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFLI LPFL+IDM+VA+I+M+MGM+MLPP ISLPFK++ F+L+DGW L++E+
Sbjct: 189 LKTAFQIGFLIYLPFLMIDMVVASILMSMGMLMLPPIIISLPFKLLLFILVDGWYLVIES 248
Query: 241 LVKSF 245
LVK+F
Sbjct: 249 LVKTF 253
>gi|162210056|ref|YP_331659.2| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
1710b]
Length = 253
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 95/241 (39%), Positives = 141/241 (58%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A + + + V+T + T+LS P +L+M+T F R
Sbjct: 16 ILIGLAPALACAQAAGLPAFNSAPGSNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G S PPN V++ LALF+T +VMSP LDR+ +P + A
Sbjct: 76 IIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQA 135
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+QR PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+
Sbjct: 136 VQRGTAPFKAFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTG 191
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 251
Query: 245 F 245
F
Sbjct: 252 F 252
>gi|225181595|ref|ZP_03735036.1| flagellar biosynthetic protein FliP [Dethiobacter alkaliphilus AHT
1]
gi|225167703|gb|EEG76513.1| flagellar biosynthetic protein FliP [Dethiobacter alkaliphilus AHT
1]
Length = 257
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 90/249 (36%), Positives = 150/249 (60%), Gaps = 9/249 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDV-----MNIPADLSISTWIVRTFGIFTILSIAPILL 56
+ F L P + A+ + + ++ + T+L++ P L
Sbjct: 12 LSAVLFIGILFLPSRLGAEPLPFPTNVNIDIGTATEPEQVVGSLQLLMLLTVLTLVPAFL 71
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
++T F R ++V +R + PPN VII LALF+TF++M+P + E IQP +
Sbjct: 72 ALMTSFTRIVVVLGFVRNALATQQTPPNQVIIGLALFLTFFIMAPIYTQVNETAIQPYLE 131
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
+IT+ A+ A+P FM + TREKDL+LF+++++ T D + +L+P+F
Sbjct: 132 EEITQEEALAIGAQPLREFMFHQTREKDLALFVNISNGERPET----RDDVPMHVLVPAF 187
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
+ISEL+ +F++GF++ +PF+IIDM+VA+ +M+MGM MLPP +SLPFK++ FV++DGW L
Sbjct: 188 VISELKTAFQMGFMLFIPFVIIDMVVASTLMSMGMFMLPPVMVSLPFKLLLFVMVDGWHL 247
Query: 237 LVENLVKSF 245
+V++LV+SF
Sbjct: 248 VVKSLVESF 256
>gi|229528865|ref|ZP_04418255.1| flagellar biosynthesis protein FliP [Vibrio cholerae 12129(1)]
gi|229332639|gb|EEN98125.1| flagellar biosynthesis protein FliP [Vibrio cholerae 12129(1)]
gi|327484651|gb|AEA79058.1| Flagellar biosynthesis protein FliP [Vibrio cholerae LMA3894-4]
Length = 299
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 90/236 (38%), Positives = 139/236 (58%), Gaps = 5/236 (2%)
Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
+ V + + ++ + T+L P ++I++T F R ++V
Sbjct: 67 IALGSSSVGGGIPAFTMTTNSDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVM 126
Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
SILR MG+ P N VII +ALF+TF++M+P ++ E +QP +N QIT A
Sbjct: 127 SILRQAMGLQQTPSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQ 186
Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
EP FM TR DL F++M+ +T + + +LIP+F+ SEL+ +F+IGF
Sbjct: 187 EPLKAFMLKQTRVNDLETFVEMSG-----AQVTAPEQVSMAVLIPAFITSELKTAFQIGF 241
Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++ LPFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 242 MLFLPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297
>gi|121596084|ref|YP_987980.1| flagellar biosynthesis protein FliP [Acidovorax sp. JS42]
gi|120608164|gb|ABM43904.1| flagellar biosynthetic protein FliP [Acidovorax sp. JS42]
Length = 251
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 94/227 (41%), Positives = 140/227 (61%), Gaps = 4/227 (1%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
+L V+ + + ++T FT LS P +L+M+T F R +IV S+LR +G
Sbjct: 27 PAGALPLVIGSGPGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGT 86
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
S PPN VII L+LF+T +VM PTLD+ + P N IT AIQ+ P FM
Sbjct: 87 QSAPPNQVIIGLSLFLTLFVMGPTLDKVYQEAYVPYTTNAITFEQAIQKAEAPMRGFMLK 146
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
TR+ D +LF +A + + R+L+P+F+ SEL+ +F+IGF+I +PFLII
Sbjct: 147 QTRQSDFALFARLAKL----DEGVTAETAPLRVLVPAFVTSELKSAFQIGFMIFIPFLII 202
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
DM+V++++M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF
Sbjct: 203 DMVVSSVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 249
>gi|32266191|ref|NP_860223.1| flagellar biosynthesis protein FliP [Helicobacter hepaticus ATCC
51449]
gi|32262241|gb|AAP77289.1| flagellar basal body protein FliP [Helicobacter hepaticus ATCC
51449]
Length = 265
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 98/225 (43%), Positives = 147/225 (65%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
S+ + P + + + I T+L IAP L++++T F R +IVF+ LRT +G
Sbjct: 44 PSVDLSLTAPKEPTELVATLNIVLIITLLVIAPSLVLVMTSFTRIVIVFAFLRTALGTQQ 103
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PP V++SLAL +TF++M P +S E+GI+P +I+ A +R PF FM NT
Sbjct: 104 SPPTQVLVSLALILTFFIMEPVATKSYEVGIKPYAEKKISYDEAFERAIVPFKDFMIKNT 163
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + + +L+P+FMISEL+ +F IGFL+ LPFL+IDM
Sbjct: 164 REKDLALFFRIRQLENP----QSVNDVPLTVLLPAFMISELKTAFWIGFLLYLPFLVIDM 219
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++++++MAMGMMMLPP ISLPFK++ F+L+DGW+LL+ NLV+ F
Sbjct: 220 VISSVLMAMGMMMLPPVMISLPFKILVFILVDGWNLLIGNLVQGF 264
>gi|197120185|ref|YP_002140612.1| flagellar biosynthesis protein FliP [Geobacter bemidjiensis Bem]
gi|197089545|gb|ACH40816.1| flagellar biogenesis protein FliP [Geobacter bemidjiensis Bem]
Length = 247
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 92/235 (39%), Positives = 150/235 (63%), Gaps = 8/235 (3%)
Query: 15 ELVFAKSSLHDVMNIPAD----LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
A+ +++ + + +++ F + T++S+AP LL+M T F R ++V S
Sbjct: 16 GTALAEPLSLPTVSVGVGKVTKPADVSVVLQIFFLMTVISLAPSLLMMTTSFTRIVVVLS 75
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
LR+ +G P N +++ L+LF+TF++M+P + +QP +QIT+ A++R
Sbjct: 76 FLRSALGTQQAPSNQIVVGLSLFLTFFIMAPVWQQVNANALQPYRASQITQEEAVKRGVA 135
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM + REKDL+LF++++ D I LIP++M+SEL+ +F+IGFL
Sbjct: 136 PLRKFMLSQVREKDLALFINLSKLPRPK----NADDIPTLTLIPAYMVSELKTAFQIGFL 191
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I +PFL++DM+VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 192 IFIPFLVLDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 246
>gi|311105950|ref|YP_003978803.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans A8]
gi|310760639|gb|ADP16088.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans A8]
Length = 263
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 100/235 (42%), Positives = 146/235 (62%), Gaps = 6/235 (2%)
Query: 13 TPELVFAKSSLHDVMNIPA--DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
P V A+++L + P + ++T + T LS P L+M+T F R IIV
Sbjct: 31 FPAGVVAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLG 90
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
+LR+ MG PPN V+I LALF+TFY MSP D+ +PL I A++R A
Sbjct: 91 LLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYKPLSEGSIQFEAAVERAAG 150
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM + TRE DLSLF ++A + + RIL+P+F+ SEL+ +F+IGF
Sbjct: 151 PLRTFMLHQTRENDLSLFANLAKQP----ALEDPSQVPLRILVPAFITSELKTAFQIGFT 206
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L +SF
Sbjct: 207 IFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLMGSLAQSF 261
>gi|315498438|ref|YP_004087242.1| flagellar biosynthetic protein flip [Asticcacaulis excentricus CB
48]
gi|315416450|gb|ADU13091.1| flagellar biosynthetic protein FliP [Asticcacaulis excentricus CB
48]
Length = 268
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 96/241 (39%), Positives = 155/241 (64%), Gaps = 7/241 (2%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
++ P V A+S D+ +++ +V+ G+ T+LS+AP ++IM T F R
Sbjct: 27 ILGFALMIFPGDVLAQSVNLDL---GQGGTLTARVVQMLGLLTVLSLAPSIVIMTTSFIR 83
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
++V S+LRT +G+ PPN V+ISLA+F++ VM+PT + + GI+PLM+ ++ A
Sbjct: 84 IVVVLSLLRTALGLQQSPPNAVLISLAMFLSAVVMAPTYQAAYDAGIRPLMDQEMEMPQA 143
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+EP FM + DL+LF+ ++ ++ + ++ P+FMISEL+ +
Sbjct: 144 FDAASEPVKTFMLSQVDAGDLNLFIRLSKVEKPKDNM----DLPITVITPAFMISELKTA 199
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F IGFL+ +PFL+ID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGW L+ +LV+S
Sbjct: 200 FLIGFLLFIPFLVIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWRLVCGSLVES 259
Query: 245 F 245
F
Sbjct: 260 F 260
>gi|163744333|ref|ZP_02151693.1| flagellar biosynthetic protein FliP [Oceanibulbus indolifex HEL-45]
gi|161381151|gb|EDQ05560.1| flagellar biosynthetic protein FliP [Oceanibulbus indolifex HEL-45]
Length = 278
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 109/222 (49%), Positives = 157/222 (70%), Gaps = 3/222 (1%)
Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
+ ++S IV+ + T+LSIAP LL+++T F RF+IV S+LR+ +G+ PPN+V+
Sbjct: 52 GSDENANLSGRIVQFIALMTVLSIAPGLLVVMTSFTRFVIVLSMLRSALGLNQTPPNIVL 111
Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
SLALFMTF+VM P + + E G+QPL+ N I E A++R+A PF FM NTR +D +L
Sbjct: 112 TSLALFMTFFVMQPVFEDAYEAGVQPLLENAIAEEQALERIAAPFKSFMYVNTRPEDYAL 171
Query: 148 FMDMAHSSHRNTD---ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
F+ +A + + + +R L+P+FMISELRR+F IGFLI LPF+ ID+I+A+
Sbjct: 172 FLRIAPADEEAEETPLPASAEEATFRHLVPAFMISELRRAFTIGFLIYLPFVAIDLIIAS 231
Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++M+ GMMMLPP ISLPFKVIFFVLIDGW +L +L++S++
Sbjct: 232 VLMSAGMMMLPPVLISLPFKVIFFVLIDGWYMLAGSLIESYV 273
>gi|110632650|ref|YP_672858.1| flagellar biosynthesis protein FliP [Mesorhizobium sp. BNC1]
gi|110283634|gb|ABG61693.1| flagellar biosynthetic protein FliP [Chelativorans sp. BNC1]
Length = 246
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 138/230 (60%), Positives = 176/230 (76%), Gaps = 2/230 (0%)
Query: 16 LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
A++ + A+ S +I++ FG+ T+LSIAP +LIMVT F RF+IVFSILRTG
Sbjct: 18 PAAAQTLDLGALAGQANGSTIGYIIQIFGLLTVLSIAPGILIMVTSFTRFVIVFSILRTG 77
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
+G+ S P NL+++SLALFMTFYVM+PT DR+ G++PLM NQI ETTA++R+AEPF F
Sbjct: 78 IGLPSTPANLILVSLALFMTFYVMAPTFDRAWSEGVRPLMANQIDETTAVERIAEPFRAF 137
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
M N RE+D +LF D+A R D + R+LIP+FMISE+RR FEIGFLI+LPF
Sbjct: 138 MSANVREEDYTLFADLAAE--RGGIQQTTDQADLRVLIPAFMISEIRRGFEIGFLIVLPF 195
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
L+ID+IVATI MAMGMMMLPPT ISLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 196 LVIDLIVATITMAMGMMMLPPTVISLPFKILFFVLIDGWNLLVGSLVRSF 245
>gi|300311365|ref|YP_003775457.1| flagellar biosynthetic protein FliP [Herbaspirillum seropedicae
SmR1]
gi|300074150|gb|ADJ63549.1| flagellar biosynthetic protein FliP precursor protein
[Herbaspirillum seropedicae SmR1]
Length = 244
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 95/224 (42%), Positives = 142/224 (63%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ M P + + ++T + T LS P L+M+TCF R +IV S+LR +G S
Sbjct: 24 PALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALGTQST 83
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PP V++ L+LF+TF+VMSP DR QP N+I A+ + A+P FM TR
Sbjct: 84 PPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFMLKQTR 143
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
E DL+L++ ++ + + + R+L+P+F+ SEL+ +F+IGF I LPFLIIDM+
Sbjct: 144 ESDLALYVKLSRGP----ALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLIIDMV 199
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+I+M+MGMMM+ P +SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 200 VASILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSF 243
>gi|197104388|ref|YP_002129765.1| flagellar biosynthesis protein FliP [Phenylobacterium zucineum
HLK1]
gi|196477808|gb|ACG77336.1| flagellar biosynthesis protein FliP [Phenylobacterium zucineum
HLK1]
Length = 245
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 99/221 (44%), Positives = 151/221 (68%), Gaps = 4/221 (1%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
+++ ++ +V+ G+ T+LS+AP ++IM T F R ++V S+LRT +G+ PPN
Sbjct: 22 LNIDLGTGAGLTERVVQLVGLLTVLSLAPSIVIMTTSFVRIVVVLSLLRTALGVQQSPPN 81
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
VIISLALF+T VM PT +RS + G++PL++ QI A P FM + +D
Sbjct: 82 AVIISLALFLTAIVMGPTFERSYQEGVKPLLDQQIELPQAFDAAGAPVKTFMLSQVDPED 141
Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
L+LF+ ++ T + R++ P+FMISEL+R+FEIGFL+ +PFL+ID++VA+
Sbjct: 142 LALFVRLSRIPRPATM----EDTPLRVVTPAFMISELKRAFEIGFLLFIPFLVIDLVVAS 197
Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++M+MGMMMLPP ++SLPFK+IFFVL+DGW L+ +LV+SF
Sbjct: 198 VLMSMGMMMLPPVTVSLPFKLIFFVLVDGWRLVAGSLVESF 238
>gi|89075523|ref|ZP_01161934.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
gi|89048795|gb|EAR54366.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
Length = 282
Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats.
Identities = 94/224 (41%), Positives = 139/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
V P + ++ + T L P ++I++T F R ++V SILR MG+
Sbjct: 62 PALSVTVNPDGSEDYSVTLQILALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 121
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF+VMSP +D+ +QP +N QIT A+ + +P FM TR
Sbjct: 122 PSNQVIIGIALFLTFFVMSPVIDKINADAVQPYINEQITAKEALAKAEDPMRQFMLKQTR 181
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ S+ + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 182 VKDLETFVNMSGST-----ADDPQTVPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 236
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 237 VASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 280
>gi|260886649|ref|ZP_05897912.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC
35185]
gi|260863792|gb|EEX78292.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC
35185]
Length = 251
Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats.
Identities = 95/225 (42%), Positives = 143/225 (63%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SL + A ++ + TILS+ P +L+M T F R ++V LR M +
Sbjct: 30 PSLSVNVGEAAGPQDVATSLQILALLTILSLVPSILVMTTSFVRIVVVIGFLRNAMSTQN 89
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
VPPN V+++L+LF+TFY+M P + + GIQP + QIT+ AI P FM T
Sbjct: 90 VPPNQVVLALSLFLTFYIMQPYWSEANQQGIQPYLAGQITQEQAIDNTLAPLREFMFRQT 149
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL+LF++++ + + + LIP+F+ISEL+ +F+IGF+I +PF++IDM
Sbjct: 150 RESDLALFVNLSDAERPESQA----DVSTATLIPAFVISELKTAFQIGFMIYIPFIVIDM 205
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IVA+ +M+MGMMMLPP ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 206 IVASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIKSLIMSF 250
>gi|57167820|ref|ZP_00366960.1| flagellar biosynthesis protein Cj0820c [Campylobacter coli RM2228]
gi|305432155|ref|ZP_07401321.1| flagellar biosynthetic protein FliP [Campylobacter coli JV20]
gi|57020942|gb|EAL57606.1| flagellar biosynthesis protein Cj0820c [Campylobacter coli RM2228]
gi|304444820|gb|EFM37467.1| flagellar biosynthetic protein FliP [Campylobacter coli JV20]
Length = 247
Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats.
Identities = 106/247 (42%), Positives = 159/247 (64%), Gaps = 5/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFA-KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
++ F + F A +++ ++ P + + + TIL++AP ++ ++
Sbjct: 4 ILTLLFISGFFSVIFAAEATIPTVNLSLSAPDTPNQLVTTLNIVIVLTILALAPSIIFVM 63
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R I+VFS LR MG S+PPN ++++LAL +TF++M P +S GI+P + QI
Sbjct: 64 TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEQI 123
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
A R +PF FM NTREKDL+LF + + + T D + +L+P+FMIS
Sbjct: 124 GYEEAFARGVKPFKDFMLKNTREKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMIS 179
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPP ISLPFK++ FVL+DGW+LLV+
Sbjct: 180 ELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLVQ 239
Query: 240 NLVKSFI 246
LV+SF+
Sbjct: 240 RLVESFV 246
>gi|221069288|ref|ZP_03545393.1| flagellar biosynthetic protein FliP [Comamonas testosteroni KF-1]
gi|220714311|gb|EED69679.1| flagellar biosynthetic protein FliP [Comamonas testosteroni KF-1]
Length = 249
Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats.
Identities = 93/227 (40%), Positives = 143/227 (62%), Gaps = 4/227 (1%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
A +SL ++ A + + ++T FT LS P +L+++T F R +IV S+LR +G
Sbjct: 25 APASLPLLVGQGAGGTSYSVPIQTLLFFTALSFLPAILLLMTGFTRIVIVLSLLRQALGT 84
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
S PPN V+I L+LF+T +VM PTLD+ + P N I+ AI++ P FM
Sbjct: 85 QSAPPNQVVIGLSLFLTMFVMGPTLDKVYQDAYLPYTQNSISFEQAIEKAEAPMRGFMLK 144
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
TR+ D +LF +A T + R+L+P+F+ SEL+ +F+IGF+I +PFLII
Sbjct: 145 QTRQSDFALFKRLAKLDANVT----AETAPLRVLVPAFVTSELKTAFQIGFMIFIPFLII 200
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
DM+V++I+M++GMMML P ++LPFK++ FVL DGW+L++ +L SF
Sbjct: 201 DMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLIIGSLAASF 247
>gi|329890585|ref|ZP_08268928.1| flagellar biosynthetic protein FliP [Brevundimonas diminuta ATCC
11568]
gi|328845886|gb|EGF95450.1| flagellar biosynthetic protein FliP [Brevundimonas diminuta ATCC
11568]
Length = 238
Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats.
Identities = 95/228 (41%), Positives = 148/228 (64%), Gaps = 4/228 (1%)
Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
A+ +++ + ++ +V+ G+ T+LS+AP ++IM T F R ++V S+LRT +G
Sbjct: 8 AAQGGSAINIDLGSGAGLTQRVVQLVGLMTVLSLAPSIVIMTTSFVRIVVVLSLLRTALG 67
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
M PPN V++SLALF++ VM PT + + GI+PLM+ Q+ A +EP FM
Sbjct: 68 MQQSPPNAVLVSLALFLSAIVMGPTWQDAYDSGIRPLMDQQMELPQAFDAASEPVKTFML 127
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
+ DL+LF ++ + R++ P+FMISEL+ +F IGFL+ +PFL+
Sbjct: 128 AQVKPDDLALFTRLSRVEAP----ADVQDLPLRVVTPAFMISELKTAFTIGFLLFVPFLV 183
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
ID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGW L+ +LV+SF
Sbjct: 184 IDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWRLVAGSLVESF 231
>gi|55977145|gb|AAV68366.1| FliP [Herminiimonas arsenicoxydans]
Length = 271
Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats.
Identities = 95/234 (40%), Positives = 140/234 (59%), Gaps = 4/234 (1%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
+ A P + ++T + T LS P +L+M+T F R IIV S+
Sbjct: 41 MAAMAQQAGLPALTSTPTPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSL 100
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LR +G S PPN VII L+LF+T +VMSP LD+ QP N+I A+ + P
Sbjct: 101 LRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSANKIQMGEALDKAVAP 160
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
FM TRE DL+L++ M+ ++ + I RIL+P+F+ SEL+ +F+I F I
Sbjct: 161 LKTFMIKQTRESDLALYVKMSKGP----ELQGPEDIPLRILVPAFITSELKTAFQISFAI 216
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 217 FIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSF 270
>gi|253998478|ref|YP_003050541.1| flagellar biosynthesis protein FliP [Methylovorus sp. SIP3-4]
gi|253985157|gb|ACT50014.1| flagellar biosynthetic protein FliP [Methylovorus sp. SIP3-4]
Length = 258
Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats.
Identities = 100/239 (41%), Positives = 152/239 (63%), Gaps = 6/239 (2%)
Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSI--STWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
L P L A++++ + P T ++T + T LS P +L+M+T F R I
Sbjct: 23 ALLAIPALAHAEAAMPLINAAPGSGGSQNYTLSLQTLLLLTSLSFLPAVLLMMTGFTRII 82
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IV S+LR +G + PPN V++ LALF+TF+VMSP +D+ QPL N+IT A++
Sbjct: 83 IVLSLLRQALGTPTSPPNQVLVGLALFLTFFVMSPVMDKIYVEAYQPLSENKITLQEALE 142
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
+ A P FM TRE D++LFM ++ S + + R+L+P+FM SEL+ +F+
Sbjct: 143 KGAAPLKTFMLKQTREADIALFMRISRS----DAVDGPEQTPLRVLVPAFMTSELKTAFQ 198
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGF I +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW L++ +L +SF
Sbjct: 199 IGFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLVLGSLAESF 257
>gi|149182519|ref|ZP_01860992.1| flagellar biosynthesis protein P [Bacillus sp. SG-1]
gi|148849779|gb|EDL63956.1| flagellar biosynthesis protein P [Bacillus sp. SG-1]
Length = 221
Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats.
Identities = 95/217 (43%), Positives = 144/217 (66%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ V+ +FT+LSIAP +LI++T F R +IV S +RT + +PPN V++
Sbjct: 9 NSSSPDSVATSVKLLLLFTVLSIAPGILILMTSFTRIVIVLSFVRTSLATQQMPPNQVLV 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
L+LF+TF++M+PT E + PL N +I A + A PF FM +TR+KDL LF
Sbjct: 69 GLSLFLTFFIMAPTFQEVNETALTPLFNEEINLEQAYENAAGPFKDFMSKHTRQKDLELF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
++ + + D I L+P+F +SE++ +F+IGF+I +PFL+IDM+VA+I+M+
Sbjct: 129 LNYSGAERP----ESIDDIPLTALVPAFALSEIKTAFQIGFMIFIPFLVIDMVVASILMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLQSF 221
>gi|226941268|ref|YP_002796342.1| flagellar biosynthesis protein FliP [Laribacter hongkongensis
HLHK9]
gi|226716195|gb|ACO75333.1| FliP [Laribacter hongkongensis HLHK9]
Length = 251
Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 91/244 (37%), Positives = 146/244 (59%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + LV + + + + T L+ P LL+M+T
Sbjct: 9 LPWLAMGGLLVADAAAAPNIPFMNASPAGGAGTQYSLSLEMLLFLTSLTFIPALLLMMTA 68
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R +IV S+LR +G+ PPN VI+ L+LF+T +VM+P D++ P ++Q+
Sbjct: 69 FTRIVIVLSLLRQAIGLMQSPPNQVIVGLSLFLTLFVMAPVFDQAYREAWLPYSDSQMNF 128
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A ++ +PF FM TREKDL+ F+++A + T + + LIP+F++SEL
Sbjct: 129 MQAAEKGVQPFKGFMLKQTREKDLAFFVEIAREAPPATPA----DVSLKTLIPAFVVSEL 184
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF++ +PFLIID++VA+++MAMGMMM+ P ISLPFK++ FVL+DGW+LL+ +L
Sbjct: 185 KTAFQIGFMVFIPFLIIDLVVASVLMAMGMMMVSPVIISLPFKLMLFVLVDGWTLLIGSL 244
Query: 242 VKSF 245
V+SF
Sbjct: 245 VQSF 248
>gi|319405407|emb|CBI79026.1| Flagellar biosynthetic protein fliP [Bartonella sp. AR 15-3]
Length = 250
Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 133/247 (53%), Positives = 184/247 (74%), Gaps = 9/247 (3%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPAD------LSISTWIVRTFGIFTILSIAPILLIM 58
+ L+T + FA+ + + + A SIS IV+ FG+ TILS+AP LLIM
Sbjct: 7 FVLMILLLTTTVAFAQKTGPENASSLAGLFSYPEGSISGRIVQFFGLLTILSVAPGLLIM 66
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
VT F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+QPL++N+
Sbjct: 67 VTSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEQGVQPLVSNK 126
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
I+E AI+++++PF FM + REKDL LF+D++ + + +++R+LIP+FMI
Sbjct: 127 ISEQQAIEKISQPFREFMISQVREKDLDLFVDLSD---PSLQVKTGSDVDFRVLIPAFMI 183
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV
Sbjct: 184 SELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNLLV 243
Query: 239 ENLVKSF 245
+LV+SF
Sbjct: 244 GSLVRSF 250
>gi|78043022|ref|YP_359852.1| flagellar biosynthesis protein FliP [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995137|gb|ABB14036.1| flagellar biosynthetic protein FliP [Carboxydothermus
hydrogenoformans Z-2901]
Length = 254
Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 95/225 (42%), Positives = 149/225 (66%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
++ +N V+ + T+L++ P L+++T F R ++V S+LR MG
Sbjct: 33 PNIQLNINGQGSPQEVVNSVKLLVLLTVLALVPAFLLLMTSFTRIVVVLSLLRNAMGTQQ 92
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN V+I LALF+T ++MSP +++ + IQP +NNQIT+ AI+ P FM T
Sbjct: 93 APPNQVLIGLALFLTIFIMSPVINKINQDAIQPYLNNQITQEQAIRAAEAPLKDFMLKQT 152
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF+++A T D + + +++P+F+ISEL+ +F++GF++ LPFLIIDM
Sbjct: 153 REKDLALFIELAKLPRPQTK----DDVPFTVVVPAFIISELKTAFQMGFMLFLPFLIIDM 208
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+I+M+MGM M+PP ++LPFK++ FVL DGW L+V++LV SF
Sbjct: 209 VVASILMSMGMFMIPPMLVALPFKLLLFVLADGWYLVVKSLVSSF 253
>gi|239826628|ref|YP_002949252.1| flagellar biosynthesis protein FliP [Geobacillus sp. WCH70]
gi|239806921|gb|ACS23986.1| flagellar biosynthetic protein FliP [Geobacillus sp. WCH70]
Length = 222
Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 95/214 (44%), Positives = 146/214 (68%), Gaps = 4/214 (1%)
Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
+ V+ + T+LSIAP +LIM+TCF R +IV S +RT +G +PPN V++ LA
Sbjct: 12 APENVSMSVKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQVLVGLA 71
Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
LF+TF++M+PT + +QPL + +I+ A +R + P FM +TR+KDL+LF+
Sbjct: 72 LFLTFFIMAPTFKEINDQALQPLFSEKISLEQAYERASVPIKEFMSKHTRQKDLALFLSY 131
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ + I L+P+F ISE++ +F++GF+I +PFL+IDMIVA+++M+MGM
Sbjct: 132 SGAEKPK----SVQDIPLTTLVPAFAISEIKTAFQMGFMIFIPFLVIDMIVASVLMSMGM 187
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 188 MMLPPVMISLPFKILLFVLVDGWYLVVKSLLESF 221
>gi|317151987|ref|YP_004120035.1| flagellar biosynthetic protein FliP [Desulfovibrio aespoeensis
Aspo-2]
gi|316942238|gb|ADU61289.1| flagellar biosynthetic protein FliP [Desulfovibrio aespoeensis
Aspo-2]
Length = 256
Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 98/246 (39%), Positives = 143/246 (58%), Gaps = 9/246 (3%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMN-----IPADLSISTWIVRTFGIFTILSIAPILLIMV 59
C F + P L A+ + + A+ + ++ + T+LS+AP +++ +
Sbjct: 14 CLFGALALFPALSLAQDPVIPKLTMELAAGQAEPGEVSTLLEILFLLTVLSMAPAIMLTM 73
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIVF LR MG +PPN ++ LA+FMT +M P +QP + +I
Sbjct: 74 TSFTRIIIVFHFLRQAMGTQQMPPNQILAGLAIFMTVVIMMPVGKAINSTALQPYLAEEI 133
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
A++R P FM +TREKDLS+F + N D + +L+ ++ IS
Sbjct: 134 RFDEALERAQVPIREFMFKHTREKDLSIFYSITKEERPN----NRDEVNTIMLVAAYTIS 189
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ F IGFLI +PFLI+DM+VA+I++AMGMMMLPP ISLPFK++ FVLIDGW+LLV
Sbjct: 190 ELKTGFTIGFLIYIPFLILDMVVASILLAMGMMMLPPVMISLPFKILLFVLIDGWNLLVG 249
Query: 240 NLVKSF 245
+LV +F
Sbjct: 250 SLVNTF 255
>gi|170722844|ref|YP_001750532.1| flagellar biosynthesis protein FliP [Pseudomonas putida W619]
gi|169760847|gb|ACA74163.1| flagellar biosynthetic protein FliP [Pseudomonas putida W619]
Length = 255
Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 97/224 (43%), Positives = 139/224 (62%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ N P + ++ I T LS P +I++T F R IIVFSILR +G+
Sbjct: 33 PAITLSNGPDGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQT 92
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N V+ +ALF+T ++M+P DR + +QP + Q+T AI + P FM TR
Sbjct: 93 PSNQVLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTR 152
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+ DL LFM ++ TDI D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+
Sbjct: 153 QSDLDLFMRLSKR----TDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMV 208
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 209 VASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLAGSF 252
>gi|59712449|ref|YP_205225.1| flagellar biosynthesis protein FliP [Vibrio fischeri ES114]
gi|197336177|ref|YP_002156668.1| flagellar biosynthesis protein [Vibrio fischeri MJ11]
gi|59480550|gb|AAW86337.1| flagellar biosynthesis protein FliP [Vibrio fischeri ES114]
gi|197317667|gb|ACH67114.1| flagellar biosynthesis protein [Vibrio fischeri MJ11]
Length = 289
Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 87/235 (37%), Positives = 137/235 (58%), Gaps = 5/235 (2%)
Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
+ + + + ++ G+ T+L P ++I++T F R ++V S
Sbjct: 58 IAKGSSSGSGIPAFTMTTNANGGEDYSVNLQILGLMTMLGFLPAMVILMTSFTRIVVVMS 117
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
ILR MG+ P N VII +A+F+TF++M+P D+ IQP +N +IT A
Sbjct: 118 ILRQAMGLQQTPSNQVIIGIAMFLTFFIMAPVFDKVNNTAIQPYINEEITAREAFDVAQV 177
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM TR KDL F++M+ + + ++IP+F+ SEL+ +F+IGF+
Sbjct: 178 PMKEFMLAQTRVKDLETFVNMSGVE-----AENPEDVPITVVIPAFITSELKTAFQIGFM 232
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ LPFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 233 LFLPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287
>gi|283954390|ref|ZP_06371910.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni 414]
gi|283794007|gb|EFC32756.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni 414]
Length = 233
Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 104/226 (46%), Positives = 155/226 (68%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S
Sbjct: 11 PTVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQS 70
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN ++++LAL +TF++M P +S GI+P + QI A + A+PF FM NT
Sbjct: 71 MPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEQIGYEEAFVKGAKPFKDFMLKNT 130
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM
Sbjct: 131 REKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDM 186
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 187 VVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 232
>gi|254491717|ref|ZP_05104896.1| flagellar biosynthetic protein FliP [Methylophaga thiooxidans
DMS010]
gi|224463195|gb|EEF79465.1| flagellar biosynthetic protein FliP [Methylophaga thiooxydans
DMS010]
Length = 244
Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 101/246 (41%), Positives = 151/246 (61%), Gaps = 6/246 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIP--ADLSISTWIVRTFGIFTILSIAPILLIMV 59
+R L L P L A+ + V T ++ + T+L++ P L+M+
Sbjct: 1 MRVLLACLLLFAPLLAVAEPGIPAVTVTGNEDGGQSYTVTLQILALMTVLTLLPAALMMM 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIV +ILR MG+ S P N ++I LALF+T ++M P ++S + + P M+ +I
Sbjct: 61 TSFTRIIIVLAILRQAMGVQSTPSNQILIGLALFLTIFIMHPVFNQSYQNAVVPYMDGEI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
TTA ++ ++PF FM TRE D+ LF + ++ + I + +L+PSF+ S
Sbjct: 121 EFTTAFEQASQPFKEFMIAQTRETDIELFASIGGYE----ELQSAEDIPFSLLLPSFVTS 176
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +F+IGFLI +PFLIID++VA+++MAMGMMML P ISLPFK++ FVLIDGW+LL+
Sbjct: 177 ELKTAFQIGFLIFIPFLIIDLVVASVLMAMGMMMLSPMLISLPFKLMLFVLIDGWALLMG 236
Query: 240 NLVKSF 245
L SF
Sbjct: 237 TLASSF 242
>gi|121601713|ref|YP_989394.1| flagellar biosynthesis protein FliP [Bartonella bacilliformis
KC583]
gi|120613890|gb|ABM44491.1| flagellar biosynthetic protein FliP [Bartonella bacilliformis
KC583]
Length = 247
Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 134/250 (53%), Positives = 180/250 (72%), Gaps = 8/250 (3%)
Query: 1 MIRYCFFALFLVTP-----ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPIL 55
M L L P + A + + S+S WIV+ FG+ T+LS+AP L
Sbjct: 1 MSSLIVLMLVLAIPDAFAQQTGAASPGGLAGLLPSVEGSVSGWIVQLFGLLTVLSVAPGL 60
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
L+MVT F RF I FS+LR+G+G+ + PPNLV+ISLALFMTFYVM+PT + + E G+QPLM
Sbjct: 61 LMMVTSFTRFAIAFSLLRSGLGLQTTPPNLVMISLALFMTFYVMAPTFNAAWEQGVQPLM 120
Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
N+ITE AI ++++PF FM + REKDL LF+D++ + + I++RIL+P+
Sbjct: 121 KNEITEQQAIDKISQPFREFMISQVREKDLDLFVDLSD---PSFQVRTGADIDFRILVPA 177
Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+
Sbjct: 178 FMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWN 237
Query: 236 LLVENLVKSF 245
LLV +L++SF
Sbjct: 238 LLVGSLIRSF 247
>gi|302389676|ref|YP_003825497.1| flagellar biosynthetic protein FliP [Thermosediminibacter oceani
DSM 16646]
gi|302200304|gb|ADL07874.1| flagellar biosynthetic protein FliP [Thermosediminibacter oceani
DSM 16646]
Length = 254
Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 104/249 (41%), Positives = 156/249 (62%), Gaps = 7/249 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
+ + + L P A D + + + ++ I TIL++AP +L
Sbjct: 8 VTAFLAAVILLSIPITALADPEPPIPMLDFVRSARNPQETALSLQVLLILTILTLAPSIL 67
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
IM+T F R +IVFS +R+G+G +PPN V+I LALF+TF+VM+P D + IQP M
Sbjct: 68 IMMTSFIRIVIVFSFVRSGLGTQQIPPNQVLIGLALFITFFVMAPVFDDINKNAIQPYMR 127
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
+IT A+Q +P FM TREKDL+LF+ A + + D + +LIP+F
Sbjct: 128 EEITTQEALQLAQKPLRDFMFRQTREKDLALFLYHAKLQN---QVRTLDDVPTYVLIPAF 184
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
+ISEL+ +F++GF+I +PFL+IDMIVA+ +M+MGM+MLPP ISLPFK++ FV++DGW+L
Sbjct: 185 IISELKTAFQMGFIIFVPFLVIDMIVASTLMSMGMLMLPPVMISLPFKILLFVMVDGWNL 244
Query: 237 LVENLVKSF 245
+V +L+ SF
Sbjct: 245 VVSSLLSSF 253
>gi|260899945|ref|ZP_05908340.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
AQ4037]
gi|308107285|gb|EFO44825.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
AQ4037]
Length = 289
Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats.
Identities = 93/227 (40%), Positives = 139/227 (61%), Gaps = 5/227 (2%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
A + P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 66 AGIPAFTMTTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGL 125
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
P N VII +ALF+TF+VMSP L+ + IQP +N Q+T A P FM
Sbjct: 126 QQTPSNQVIIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLK 185
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
TR KDL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLII
Sbjct: 186 QTRIKDLETFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLII 240
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
D++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 241 DLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287
>gi|53717669|ref|YP_106655.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
K96243]
gi|52208083|emb|CAH34013.1| flagellar biosynthetic protein [Burkholderia pseudomallei K96243]
Length = 253
Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats.
Identities = 95/241 (39%), Positives = 142/241 (58%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A + P + + V+T + T+LS P +L+M+T F R
Sbjct: 16 ILIGLAPALACAQAAGLPAFNSAPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G S PP+ V++ LALF+T +VMSP LDR+ +P + A
Sbjct: 76 IIIVLSLLRQAIGTASTPPSQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQA 135
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+QR PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+
Sbjct: 136 VQRGTAPFKAFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTG 191
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 251
Query: 245 F 245
F
Sbjct: 252 F 252
>gi|315124338|ref|YP_004066342.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315018060|gb|ADT66153.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 230
Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats.
Identities = 103/226 (45%), Positives = 155/226 (68%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S
Sbjct: 8 PTVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQS 67
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN ++++LAL +TF++M P +S GI+P + +I A + A+PF FM NT
Sbjct: 68 MPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNT 127
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM
Sbjct: 128 REKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDM 183
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 184 VVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 229
>gi|269961630|ref|ZP_06175992.1| Flagellar biosynthetic protein fliP [Vibrio harveyi 1DA3]
gi|269833671|gb|EEZ87768.1| Flagellar biosynthetic protein fliP [Vibrio harveyi 1DA3]
Length = 289
Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats.
Identities = 89/224 (39%), Positives = 137/224 (61%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 69 PAFTMTTNADGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 128
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF++MSP L+ + +QP +N Q+T A P FM TR
Sbjct: 129 PSNQVIIGIALFLTFFIMSPVLNEINDQAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTR 188
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 189 IKDLETFVNMSGEE-----VTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 243
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 244 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287
>gi|237755394|ref|ZP_04584021.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692435|gb|EEP61416.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 338
Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats.
Identities = 108/242 (44%), Positives = 152/242 (62%), Gaps = 5/242 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
Y ++ +V L F+ S A + ++ + TI+SIAP LLI VT F
Sbjct: 101 YFIISIIIVLTLLNFSFSYADTFSETLAGFNRLDTTLKILLLITIISIAPALLISVTAFV 160
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R +IV S+LR +G+ + PPN VI+ LALF+T +VM PT ++ E+ I P + QI++
Sbjct: 161 RIVIVLSLLRHALGIPTAPPNQVIVGLALFLTIFVMKPTFEKINEVSISPYLKKQISDIQ 220
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
AI+ EP FM NTR++DL LF+D+A+ I LIP+FMISE++
Sbjct: 221 AIENAKEPLKEFMLKNTRKEDLKLFLDLANEKP-----LSPKDISISTLIPAFMISEIKT 275
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+FEI F+I LPFL+ID IVA+I+M+MGMMM+PP ISLPFK++ FVL DG+ LLV+ LV
Sbjct: 276 AFEIVFIIYLPFLVIDFIVASILMSMGMMMIPPMFISLPFKLMLFVLADGFELLVKALVS 335
Query: 244 SF 245
S+
Sbjct: 336 SY 337
>gi|229544408|ref|ZP_04433466.1| flagellar biosynthetic protein FliP [Bacillus coagulans 36D1]
gi|229324893|gb|EEN90570.1| flagellar biosynthetic protein FliP [Bacillus coagulans 36D1]
Length = 221
Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats.
Identities = 95/222 (42%), Positives = 145/222 (65%), Gaps = 4/222 (1%)
Query: 24 HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
+ V+ + T+LS+AP +LI++T F R +IV S +RT +G + PP
Sbjct: 4 LLNTLSSTSGDTVSLSVKILLLMTVLSLAPSILILLTSFTRIVIVLSFVRTSLGTQTAPP 63
Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
N VI+ LALF+TF++M+PT + + + PL ++++T A + +PF FM TR+K
Sbjct: 64 NQVIVGLALFLTFFIMAPTFQQVNKQALTPLFHDKLTLEEAYDKAQKPFKEFMAKETRQK 123
Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
DL LF+D AH I L+P+F ISEL+ +F++GF+I +PFL+IDM+VA
Sbjct: 124 DLQLFLDYAHKKQPK----SVQDIPMTTLVPAFTISELKTAFQMGFMIFIPFLVIDMVVA 179
Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+++M+MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 180 SVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLESF 221
>gi|182680542|ref|YP_001834688.1| flagellar biosynthetic protein FliP [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182636425|gb|ACB97199.1| flagellar biosynthetic protein FliP [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 246
Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats.
Identities = 122/246 (49%), Positives = 173/246 (70%), Gaps = 2/246 (0%)
Query: 1 MIRYCFFALFLVT-PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
M R + ++ +A+ + P + ++S I++ + TILS+AP LL+MV
Sbjct: 1 MKRLLIVSFLIIALAPAAYAQVPDLSTLVPPGNGTVSGRIIQLVALLTILSVAPGLLVMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F RF I S LR+G+G+ S P NLV+ISL+LFMTFYVMSP +++ + G++P+M+NQ+
Sbjct: 61 TSFTRFAIALSFLRSGLGLQSTPANLVLISLSLFMTFYVMSPVFEKAWDGGVKPMMDNQL 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
TE A ++ +PF FM R KDL LF D+A + + D T ++ IE RILIP+FMIS
Sbjct: 121 TEQEAFPKIIQPFREFMSGQVRGKDLKLFTDLAKENFPSVDQTGSE-IELRILIPAFMIS 179
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
ELRR FE+GFLI+LPFL+IDMI + I M+MGMMMLPPT I+LP KV+FF+LIDGW++L+
Sbjct: 180 ELRRGFEMGFLIVLPFLVIDMITSAITMSMGMMMLPPTVIALPVKVLFFILIDGWNMLIG 239
Query: 240 NLVKSF 245
+LV+S+
Sbjct: 240 SLVRSY 245
>gi|217976231|ref|YP_002360378.1| flagellar biosynthetic protein FliP [Methylocella silvestris BL2]
gi|217501607|gb|ACK49016.1| flagellar biosynthetic protein FliP [Methylocella silvestris BL2]
Length = 247
Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats.
Identities = 113/231 (48%), Positives = 165/231 (71%), Gaps = 3/231 (1%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
A++ + P + ++ I++ + T+LSIAP +L+M T F RF++ S LR+
Sbjct: 19 SAALAEAVDLGALIPPGGGAAASRIIQLVVLLTVLSIAPGILVMTTSFTRFVVALSFLRS 78
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
G+G+ S P NL++ISL+LFMTFYVM+PT +R+ + G++PLM+N++TE A ++ EPF
Sbjct: 79 GIGLQSTPANLILISLSLFMTFYVMAPTFERAWDAGVKPLMDNKLTEEQAFGKIVEPFRD 138
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM + REKDL LF D+A + + + R LIP+FMISELRR FEIGFLI LP
Sbjct: 139 FMMSQVREKDLKLFEDLAGEKFKTKSQSTGE---IRTLIPAFMISELRRGFEIGFLIALP 195
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FL+IDMIV+T+ M+MGMMMLPP+ I+LP K++FF+LIDGW+LL+ +L++S+
Sbjct: 196 FLVIDMIVSTLTMSMGMMMLPPSVIALPIKILFFILIDGWNLLIGSLIRSY 246
>gi|254519408|ref|ZP_05131464.1| flagellar biosynthetic protein FliP [Clostridium sp. 7_2_43FAA]
gi|226913157|gb|EEH98358.1| flagellar biosynthetic protein FliP [Clostridium sp. 7_2_43FAA]
Length = 257
Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats.
Identities = 94/249 (37%), Positives = 149/249 (59%), Gaps = 8/249 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIST-----WIVRTFGIFTILSIAPILL 56
I AL + V A+ +NI ++ ++ I TIL++ P ++
Sbjct: 10 IMLIALALIFTFDKSVSAEPINIPNVNISVGGESTSPQNYVDNIKLLIILTILTLLPSII 69
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
IM+T F R I+VFS L++ +G PN ++I LALF+T ++M P +P M
Sbjct: 70 IMMTSFTRIIVVFSFLKSALGAQQSIPNQILIGLALFLTIFIMQPVYSEINNNAFKPFME 129
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
N IT+ A++ ++P FM TR+KDL LF++ + D+I ++IP+F
Sbjct: 130 NTITQDEAMEAGSKPLREFMLKQTRQKDLELFIETSKLDKEEI---TRDNIPLTVVIPAF 186
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
ISEL+ +F+IGFL+ LPFLIIDM+VA+++M+MGM M+PP ++LPFK++ FV++DGW L
Sbjct: 187 AISELKTAFQIGFLLFLPFLIIDMVVASVLMSMGMFMVPPVMVALPFKLLLFVMVDGWYL 246
Query: 237 LVENLVKSF 245
+V++L+ SF
Sbjct: 247 MVKSLIMSF 255
>gi|315928248|gb|EFV07564.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
jejuni DFVF1099]
Length = 233
Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats.
Identities = 103/226 (45%), Positives = 155/226 (68%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S
Sbjct: 11 PTVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQS 70
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN ++++LAL +TF++M P +S GI+P + +I A + A+PF FM NT
Sbjct: 71 MPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNT 130
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM
Sbjct: 131 REKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDM 186
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 187 VVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 232
>gi|304311110|ref|YP_003810708.1| Flagellar transport protein FliP [gamma proteobacterium HdN1]
gi|301796843|emb|CBL45055.1| Flagellar transport protein FliP [gamma proteobacterium HdN1]
Length = 253
Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats.
Identities = 93/240 (38%), Positives = 147/240 (61%), Gaps = 6/240 (2%)
Query: 9 LFLVTPELVFAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
++L+ A D ++ P + ++ G T+L++ P +++M+T F R
Sbjct: 15 VWLMPSSSSAADPWSVDALSLKTNPDGTESWSVSLQVLGFMTVLTLLPAIVLMMTAFTRI 74
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
IIVFSILR +G+ P N +++ LALF+T +VM P D + ++P +I AI
Sbjct: 75 IIVFSILRQAIGLQQAPSNQILVGLALFLTLFVMRPVFDEINRVAVEPYQAEKIDGMQAI 134
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
Q + P FM RE DL+LF+++A R ++ D + I+IP+F+ SEL+ +F
Sbjct: 135 QAASGPLRKFMMAQIREADLTLFIELAGEQDRYHEV---DEVPLTIIIPAFITSELKTAF 191
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+IGFL+ +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FV +DGW+++V +L S+
Sbjct: 192 QIGFLLFIPFLIIDMVVASVLMAMGMMMLSPMIISLPFKIMLFVFVDGWAMVVGSLAASY 251
>gi|170751431|ref|YP_001757691.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans
JCM 2831]
gi|170657953|gb|ACB27008.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans
JCM 2831]
Length = 255
Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats.
Identities = 101/230 (43%), Positives = 155/230 (67%), Gaps = 8/230 (3%)
Query: 16 LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
A+S D+ + ++ + T+L++AP +L+M T F R ++V SILR+
Sbjct: 32 PAVAQSVTLDL----GAGGTTERALQLVALITVLAVAPSVLVMATAFTRIVVVLSILRSA 87
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
+G + PP V++SLALF+T +VM+PT + GI+PL+ +IT+ A +R + PF F
Sbjct: 88 LGTQTAPPTAVLVSLALFLTAFVMAPTGRAAYSAGIEPLIAGRITQAQAFERASAPFKTF 147
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
M N REKDL LF+D+A + + I+ P+FMISELRR+FEIGFL+ +PF
Sbjct: 148 MLRNVREKDLKLFLDLAKVPAPKG----PEDVGLEIVTPAFMISELRRAFEIGFLLFIPF 203
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LIID++VA+++MA+GMMM+PP +++LPFK+IFFVL+DGW+L+ +LV+S+
Sbjct: 204 LIIDLVVASVLMAVGMMMVPPATVALPFKLIFFVLVDGWTLVAGSLVQSY 253
>gi|239997094|ref|ZP_04717618.1| flagellar biosynthesis protein FliP [Alteromonas macleodii ATCC
27126]
Length = 251
Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats.
Identities = 89/232 (38%), Positives = 138/232 (59%), Gaps = 3/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
P S V T ++ I T LS+ P ++M+T F R I+V SILR
Sbjct: 19 PAYAQQGISAVTVTTNQDGSQDYTMTLQALFIMTALSLIPAFIMMMTSFTRIIVVLSILR 78
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+G+ P N ++I ++LF++ ++M+P + E +QP +N Q+T A+++ P
Sbjct: 79 QAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQLTSLDALEQAKGPMR 138
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM + TR KDL F+ +A + + + ILIP+F+ SEL+ +F+IGF++ +
Sbjct: 139 AFMLSQTRVKDLETFVRIAGDEGK---YADTNEVPLTILIPAFVTSELKTAFQIGFMLFI 195
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFLIID++VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L+ L SF
Sbjct: 196 PFLIIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIFGTLATSF 247
>gi|254251034|ref|ZP_04944352.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158]
gi|124893643|gb|EAY67523.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158]
Length = 253
Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats.
Identities = 93/217 (42%), Positives = 143/217 (65%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
P + + V+T + T+LS P +L+M+T F R IIV S+LR +G + PPN V++
Sbjct: 40 GPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLV 99
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LA+F+TF+VMSP LD++ G +P + + A+QR PF FM TRE DL+LF
Sbjct: 100 GLAMFLTFFVMSPVLDKAYTDGYKPFSDGAMPMEQAVQRGVAPFKSFMLKQTRETDLALF 159
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
++ + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+
Sbjct: 160 AKISK----AAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMS 215
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 216 MGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252
>gi|317121829|ref|YP_004101832.1| flagellar biosynthetic protein FliP [Thermaerobacter marianensis
DSM 12885]
gi|315591809|gb|ADU51105.1| flagellar biosynthetic protein FliP [Thermaerobacter marianensis
DSM 12885]
Length = 227
Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats.
Identities = 87/225 (38%), Positives = 143/225 (63%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
++ + ++ + T+LS+AP +LIM+T F R ++ S LR+ +G
Sbjct: 3 PQVNVTLQPATGPEGLGVALQILLLLTVLSLAPAILIMMTGFTRIVVALSFLRSALGTQQ 62
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN V++ LALF+T +VM+P + + P + QI + A+QR +P FM T
Sbjct: 63 APPNQVLVGLALFLTVFVMAPVWQQVYQDAWVPYRDGQIGQVEALQRAQQPVREFMFRYT 122
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE+DL+LF++++ + D + +LIP+F ISEL+ +F+IGF++ +PFL+IDM
Sbjct: 123 RERDLALFLELSGRG----PVESRDQVPTYVLIPAFAISELKTAFQIGFILYVPFLVIDM 178
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+ +M+MGM+M+PP +SLPFK++ FVL+DGW+L+V +L+ SF
Sbjct: 179 VVASTLMSMGMLMVPPMLVSLPFKILLFVLVDGWNLVVRSLLASF 223
>gi|258624667|ref|ZP_05719602.1| flagellar assembly protein [Vibrio mimicus VM603]
gi|258583059|gb|EEW07873.1| flagellar assembly protein [Vibrio mimicus VM603]
Length = 256
Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats.
Identities = 83/242 (34%), Positives = 131/242 (54%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+V P ++ A + ++ + T LS P ++M T F
Sbjct: 18 IILAFCLVVFPTYAADNGLTILSVSDGATEQEYSVKLQILLLMTALSFLPAFILMATSFT 77
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R I+V +ILR +G+ PPN V++ +AL +T +M P + QP N +IT
Sbjct: 78 RIIVVLAILRQALGLQQTPPNRVLVGIALTLTLLIMRPVWTDIYKNAFQPYDNGEITLVQ 137
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +P FM T + L + +A+ + I + I++P+F+ISEL+
Sbjct: 138 AFSVAEKPVREFMLAQTHQNSLEQMLRIANEP----IDQNVEDISFAIVLPAFVISELKT 193
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V +L
Sbjct: 194 AFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGSLSA 253
Query: 244 SF 245
SF
Sbjct: 254 SF 255
>gi|254559115|ref|YP_003066210.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
DM4]
gi|254266393|emb|CAX22157.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
DM4]
Length = 253
Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats.
Identities = 102/215 (47%), Positives = 152/215 (70%), Gaps = 4/215 (1%)
Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
+ ++ + T+L++AP +L+M T F R ++V SILR+ +G + PPN V++SL
Sbjct: 41 GAGGTTERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSL 100
Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
ALF+T +VM+PT + G++PLM QI+++ A +R + PF FM N REKDL LF+D
Sbjct: 101 ALFLTAFVMAPTAREAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLD 160
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
MA + I I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMG
Sbjct: 161 MARQPAP----AGPEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMG 216
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MMMLPP +++LPFK+IFFVL+DGW+L+ +L++S+
Sbjct: 217 MMMLPPATVALPFKLIFFVLVDGWTLVAGSLIQSY 251
>gi|284007164|emb|CBA72448.1| flagellar biosynthesis protein FliP [Arsenophonus nasoniae]
Length = 245
Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats.
Identities = 89/244 (36%), Positives = 143/244 (58%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + P +A + + V+T T L P LL+M T
Sbjct: 4 LLFLLSNTLFWLPLHAYAAIPAITSQPLANGGQSWSLPVQTLIFITALGFIPALLLMTTS 63
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIV +LR +G + PPN +++ LALFMTF+VMSP D+ + P +IT
Sbjct: 64 FTRIIIVLGLLRNALGTPTAPPNQILLGLALFMTFFVMSPVFDKIYQNAYLPFSEEKITI 123
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
+ A+P FM TR+ DL+LF +A+ +++ + RIL+P+F+ SEL
Sbjct: 124 EVDLSEGAKPLRQFMLQQTRQPDLALFARLAN----DSEYQTQADVPMRILVPAFITSEL 179
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF++ +PFLIID++VA+++MA+GMMM+PP ++++PFK++ FVL+DGW L++ +L
Sbjct: 180 KTAFQIGFMLFIPFLIIDLVVASVLMALGMMMVPPATVAMPFKLMLFVLVDGWQLILGSL 239
Query: 242 VKSF 245
+SF
Sbjct: 240 AQSF 243
>gi|205356321|ref|ZP_03223086.1| putative lipoprotein [Campylobacter jejuni subsp. jejuni CG8421]
gi|205345706|gb|EDZ32344.1| putative lipoprotein [Campylobacter jejuni subsp. jejuni CG8421]
Length = 233
Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats.
Identities = 103/226 (45%), Positives = 154/226 (68%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ ++ P + + + TIL +AP ++ ++T F R I+VFS LR MG S
Sbjct: 11 PTVNLNLSAPNTPNQLVTTLNIVIVLTILVLAPSIVFVMTSFLRLIVVFSFLRQAMGTQS 70
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN ++++LAL +TF++M P +S GI+P + +I A + A+PF FM NT
Sbjct: 71 MPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNT 130
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM
Sbjct: 131 REKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDM 186
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 187 VVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 232
>gi|187478200|ref|YP_786224.1| flagellar biosynthesis protein FliP [Bordetella avium 197N]
gi|115422786|emb|CAJ49314.1| flagellar biosynthetic protein [Bordetella avium 197N]
Length = 255
Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats.
Identities = 102/247 (41%), Positives = 149/247 (60%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA--DLSISTWIVRTFGIFTILSIAPILLIM 58
++ V P A+++L + P + ++T + T LS P L+M
Sbjct: 11 LLGLATLVSLAVMPSGAIAQATLPALTTTPGVNGSQTYSLSMQTLLLMTSLSFLPAALLM 70
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R IIV +LR+ MG PPN V++ +ALF+TFY MSP D+ QPL
Sbjct: 71 MTGFTRIIIVLGLLRSAMGTAMSPPNHVLVGIALFLTFYTMSPVFDKIYTEAYQPLSTGS 130
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
I TA++R P FM + TRE DL+LF ++A+ I + RILIP+F+
Sbjct: 131 IPFETALERAGAPLHTFMLHQTRENDLALFANLANIPK----IEDPSKVPMRILIPAFIT 186
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL DGW+LL+
Sbjct: 187 SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVSLPFKLMLFVLADGWNLLL 246
Query: 239 ENLVKSF 245
+L KSF
Sbjct: 247 GSLAKSF 253
>gi|256376457|ref|YP_003100117.1| flagellar biosynthesis protein FliP [Actinosynnema mirum DSM 43827]
gi|255920760|gb|ACU36271.1| flagellar biosynthetic protein FliP [Actinosynnema mirum DSM 43827]
Length = 293
Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats.
Identities = 77/221 (34%), Positives = 133/221 (60%), Gaps = 4/221 (1%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
+ +NI + + T+LS+AP LL++ T F + +V SI R +G+ +VPPN
Sbjct: 76 NSVNITVGGGKPSDSLTVLVALTVLSVAPALLLLCTSFTKVFVVLSITRNALGLTTVPPN 135
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
V+ LALF++ ++M P + GIQP + + + A + ++P FM TR ++
Sbjct: 136 QVLAGLALFLSLFIMGPVASEVNDQGIQPYLKGEKSTEQAFEDGSKPLREFMVKQTRPEE 195
Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
++LF ++ + + LIP+F++SELR + IGF++ +PFL+IDM+V+
Sbjct: 196 IALFTKVSGQEKP----ANAESVPLTTLIPAFVLSELRAAMIIGFVLYIPFLVIDMVVSA 251
Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+M++GMMMLPP +++LPFK++ FVL +GW L++ LV ++
Sbjct: 252 ALMSLGMMMLPPVTVALPFKLLLFVLANGWGLVITALVATY 292
>gi|332994111|gb|AEF04166.1| flagellar biosynthesis protein FliP [Alteromonas sp. SN2]
Length = 252
Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats.
Identities = 90/242 (37%), Positives = 142/242 (58%), Gaps = 3/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ + P L S V+ T ++ I T LS+ P ++M+T F
Sbjct: 10 VVLASWVIAEPALAQQGISAVTVVTNDDGSQDYTMTLQALFIMTALSLIPAFIMMMTSFT 69
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R I+V SILR +G+ P N +++ ++LF++ ++M+P + E +QP ++ Q+T
Sbjct: 70 RIIVVLSILRQAIGLQQSPSNQILVGVSLFLSMFIMAPVFEEINERALQPYLSEQMTSLD 129
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
AI++ P FM + TR KDL F+ +A + D + ILIP+F+ SEL+
Sbjct: 130 AIEQAKGPMRAFMLSQTRVKDLETFVRIAGDEGK---YADTDEVPLTILIPAFVTSELKT 186
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF++ +PFLIID++VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L+ L
Sbjct: 187 AFQIGFMLFIPFLIIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIFGTLAT 246
Query: 244 SF 245
SF
Sbjct: 247 SF 248
>gi|66735095|gb|AAY53788.1| flagella export apparatus [Campylobacter jejuni]
Length = 233
Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats.
Identities = 102/226 (45%), Positives = 155/226 (68%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S
Sbjct: 11 PTVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQS 70
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN ++++LAL +TF++M P +S GI+P ++ +I A + A+PF FM NT
Sbjct: 71 MPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNT 130
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI PFL+IDM
Sbjct: 131 REKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYQPFLVIDM 186
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 187 VVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 232
>gi|167834870|ref|ZP_02461753.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
MSMB43]
Length = 253
Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats.
Identities = 97/241 (40%), Positives = 143/241 (59%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A + P + + V+T + T+LS P +L+M+T F R
Sbjct: 16 ILIGLAPALACAQAAGLPAFNSAPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G S PPN V++ LALF+T +VMSP LDR+ +P + A
Sbjct: 76 IIIVLSLLRQALGTASTPPNQVLVGLALFLTLFVMSPVLDRAYADAYKPFSEGTLQMDQA 135
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+QR A PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+
Sbjct: 136 VQRGAAPFKTFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTG 191
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 251
Query: 245 F 245
F
Sbjct: 252 F 252
>gi|212709502|ref|ZP_03317630.1| hypothetical protein PROVALCAL_00544 [Providencia alcalifaciens DSM
30120]
gi|212687840|gb|EEB47368.1| hypothetical protein PROVALCAL_00544 [Providencia alcalifaciens DSM
30120]
Length = 247
Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats.
Identities = 101/241 (41%), Positives = 147/241 (60%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
AL L P+ A + + V+T T+L P +L+M+T F R
Sbjct: 9 IISALLLALPQSASAALPAVISHTLADGGQSWSLPVQTLLFLTLLGFIPAMLLMMTSFTR 68
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV +LR +G S PPN V++ LALF+TF+VMSP D+ QP ++I+ TA
Sbjct: 69 IIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQPFSEDKISLETA 128
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+++ P FM TRE DL+LF +A DI + + RILIP+F+ SEL+ +
Sbjct: 129 LEKGTAPLRTFMLGQTRESDLALFARIAKVG----DIQEAKDVPMRILIPAFITSELKTA 184
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 185 FQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQS 244
Query: 245 F 245
F
Sbjct: 245 F 245
>gi|118474799|ref|YP_891929.1| flagellar biosynthesis protein FliP [Campylobacter fetus subsp.
fetus 82-40]
gi|118414025|gb|ABK82445.1| flagellar biosynthetic protein FliP [Campylobacter fetus subsp.
fetus 82-40]
Length = 244
Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats.
Identities = 105/245 (42%), Positives = 150/245 (61%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+ FF +++ ++ P + + T+L++AP L+ ++T
Sbjct: 3 LFFLIFFGFVTGFAAETVTIPTINLNLSAPDTPQQLVTSLNVLIVLTLLALAPSLIFVMT 62
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVFS LR MG +PP V+ISLAL +TF++M P +S GI+P + +I
Sbjct: 63 SFLRLIIVFSFLRQAMGTQQMPPTNVLISLALILTFFIMEPVAKQSYNEGIKPYLEEKIG 122
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A A+PF FM NTREKDL+LF + + NT D I + I P+F+ISE
Sbjct: 123 YQDAFALGAKPFKEFMVRNTREKDLALFYRIRALPNPNT----VDDIPFTIAAPAFIISE 178
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +FEIGFL+ LPFL+IDM+V++++M+MGMMMLPP ISLPFK++ FVL+DGW+LL+ N
Sbjct: 179 LKTAFEIGFLLYLPFLVIDMVVSSVLMSMGMMMLPPVMISLPFKLLIFVLVDGWNLLIGN 238
Query: 241 LVKSF 245
LV SF
Sbjct: 239 LVASF 243
>gi|332140592|ref|YP_004426330.1| flagellar biosynthesis protein FliP [Alteromonas macleodii str.
'Deep ecotype']
gi|327550614|gb|AEA97332.1| flagellar biosynthesis protein FliP [Alteromonas macleodii str.
'Deep ecotype']
Length = 251
Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats.
Identities = 90/232 (38%), Positives = 138/232 (59%), Gaps = 3/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
P S V T ++ I T LS+ P ++M+T F R I+V SILR
Sbjct: 19 PVYAQQGISAVTVTTNQDGSQDYTMTLQALFIMTALSLIPAFIMMMTSFTRIIVVLSILR 78
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+G+ P N ++I ++LF++ ++M+P + E +QP +N Q+T A+++ P
Sbjct: 79 QAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQLTSLDALEQAKGPMR 138
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM + TR KDL F+ +A + D + ILIP+F+ SEL+ +F+IGF++ +
Sbjct: 139 AFMLSQTRVKDLETFVRIAGDEGK---YADTDEVPLTILIPAFVTSELKTAFQIGFMLFI 195
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFLIID++VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L+ L SF
Sbjct: 196 PFLIIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIFGTLATSF 247
>gi|330839520|ref|YP_004414100.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC
35185]
gi|329747284|gb|AEC00641.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC
35185]
Length = 252
Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats.
Identities = 95/225 (42%), Positives = 143/225 (63%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SL + A ++ + TILS+ P +L+M T F R ++V LR M +
Sbjct: 31 PSLSVNVGEAAGPQDVATSLQILALLTILSLVPSILVMTTSFVRIVVVIGFLRNAMSTQN 90
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
VPPN V+++L+LF+TFY+M P + + GIQP + QIT+ AI P FM T
Sbjct: 91 VPPNQVVLALSLFLTFYIMQPYWSEANQQGIQPYLAGQITQEQAIDNTLAPLREFMFRQT 150
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL+LF++++ + + + LIP+F+ISEL+ +F+IGF+I +PF++IDM
Sbjct: 151 RESDLALFVNLSDAERPESQA----DVSTATLIPAFVISELKTAFQIGFMIYIPFIVIDM 206
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IVA+ +M+MGMMMLPP ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 207 IVASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIKSLIMSF 251
>gi|123442774|ref|YP_001006751.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122089735|emb|CAL12588.1| flagellar biosynthetic protein FliP [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 228
Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats.
Identities = 91/230 (39%), Positives = 143/230 (62%), Gaps = 4/230 (1%)
Query: 16 LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
+ A+ + + V+T T LS P L+M+T F R IIV +LR
Sbjct: 1 MAMAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNA 60
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
+G S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P F
Sbjct: 61 LGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREF 120
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
M TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PF
Sbjct: 121 MLRQTRESDLALYARLANLP----PLEGPEVVPLRILLPAYVTSELKTAFQIGFTVFIPF 176
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 177 LIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 226
>gi|83858799|ref|ZP_00952321.1| flagellar biosynthesis protein FliP [Oceanicaulis alexandrii
HTCC2633]
gi|83853622|gb|EAP91474.1| flagellar biosynthesis protein FliP [Oceanicaulis alexandrii
HTCC2633]
Length = 258
Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats.
Identities = 100/225 (44%), Positives = 154/225 (68%), Gaps = 5/225 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ D +++ +++ + T+LS+AP +LIM T F R ++V S+LRT MG+
Sbjct: 32 GPGLSISLGGNDTALTERVLQMIALLTVLSLAPSILIMTTSFIRIVVVLSLLRTAMGLQQ 91
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN V+ISL+LF+T ++M+P ++ + G++PL++ Q++ A A+P FM +T
Sbjct: 92 SPPNAVLISLSLFLTAFIMAPVFTQAYQDGVEPLLSGQLSNQEAFSAAAQPVKTFMLAHT 151
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE+DL LF++++ ++ P+FMISELRR+FEIGFL+ +PFLIID+
Sbjct: 152 REEDLGLFLNISGEEP-----ETAQDTPVHVVAPAFMISELRRAFEIGFLLFIPFLIIDL 206
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+I+M+MGMMMLPP ISLPFK+IFFVL+DGWSL++ +LV+SF
Sbjct: 207 VVASILMSMGMMMLPPVIISLPFKLIFFVLVDGWSLVIGSLVQSF 251
>gi|169831899|ref|YP_001717881.1| flagellar biosynthetic protein FliP [Candidatus Desulforudis
audaxviator MP104C]
gi|169638743|gb|ACA60249.1| flagellar biosynthetic protein FliP [Candidatus Desulforudis
audaxviator MP104C]
Length = 260
Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats.
Identities = 98/244 (40%), Positives = 150/244 (61%), Gaps = 9/244 (3%)
Query: 6 FFALFLVTPELVFAKSSLHD----VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+AL ++P +A+ + P + VR T++S+ P L+MVT
Sbjct: 21 LWALGGLSPSAAWAQPVPIPSIELTIGEPESPAEVVSSVRLLLFLTVISLLPAFLVMVTS 80
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R ++V + LR G+G+ PP V+I LALF+T ++M+P + E I+P + +I +
Sbjct: 81 FTRIVVVLAFLRAGLGIYQAPPGSVLIGLALFLTVFIMAPVYAQVNEQAIEPFLRGEIDQ 140
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A +R A P FM +TREKDL LF+ MA + + + ++IP+F+ISEL
Sbjct: 141 VEAQERAAGPLREFMLRHTREKDLDLFVRMAEIENP-----VPNELPLTVVIPAFIISEL 195
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F +GF++ LPFLIIDM+VA+I+++MGM MLPP ISLPFK++ FVL+DGW L+V +L
Sbjct: 196 KTAFTMGFMLYLPFLIIDMVVASILLSMGMFMLPPVMISLPFKLLLFVLVDGWYLVVRSL 255
Query: 242 VKSF 245
V+SF
Sbjct: 256 VESF 259
>gi|167579277|ref|ZP_02372151.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
TXDOH]
gi|167617383|ref|ZP_02386014.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
Bt4]
Length = 253
Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats.
Identities = 95/241 (39%), Positives = 142/241 (58%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A + P + + V+T + T+LS P +L+M+T F R
Sbjct: 16 ILIGLAPALACAQAAGLPAFNSAPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G S PPN V++ LALF+T +VMSP LD++ +P + A
Sbjct: 76 IIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDKAYTDAYKPFSEGTLQMDQA 135
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+QR PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+
Sbjct: 136 VQRGTAPFKTFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTG 191
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 251
Query: 245 F 245
F
Sbjct: 252 F 252
>gi|32471369|ref|NP_864362.1| flagellar biosynthesis protein FliP [Rhodopirellula baltica SH 1]
gi|32443210|emb|CAD72041.1| flagellar biosynthetic protein fliP-putative tr FT ansporter of
flagellar proteins [Rhodopirellula baltica SH 1]
Length = 336
Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats.
Identities = 85/219 (38%), Positives = 136/219 (62%), Gaps = 4/219 (1%)
Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
++ + T+LS+AP +L+M TC+ R IIV +LR +G+ S+PP+ V+ S+
Sbjct: 114 TSPEGLAGSLQVMLLLTVLSLAPAILLMTTCYVRIIIVLGLLRQAIGLQSLPPSQVMTSV 173
Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRNNTRE--KDLS 146
ALFMT +VM+P R + I+P + + +T A ++ A P FM RE +
Sbjct: 174 ALFMTLFVMTPVWTRVYDDAIKPYTDPEVEMTLEEAFEKGAIPIREFMAWQIREARNEDD 233
Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
+ + + + D + R+L+P+F++SEL+ SF +GF I LPFLI+D++VA++
Sbjct: 234 VVLFYGYMDPDAVVPSTFDDVPLRVLLPAFILSELKTSFLMGFQIYLPFLIVDLVVASVT 293
Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++MGM+MLPP I+LPFK++ FVL+DGW L+VE L+ SF
Sbjct: 294 ISMGMLMLPPAVIALPFKLLLFVLVDGWRLVVEMLMNSF 332
>gi|167717397|ref|ZP_02400633.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
DM98]
Length = 244
Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats.
Identities = 96/241 (39%), Positives = 142/241 (58%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L A + P + + V+T + T+LS P +L+M+T F R
Sbjct: 7 ILIGLAPALACAQAAGLPAFNSAPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 66
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV S+LR +G S PPN V++ LALF+T +VMSP LDR+ +P + A
Sbjct: 67 IIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQA 126
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+QR PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+
Sbjct: 127 VQRGTAPFKAFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTG 182
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 183 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 242
Query: 245 F 245
F
Sbjct: 243 F 243
>gi|187926923|ref|YP_001893268.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12J]
gi|241665252|ref|YP_002983611.1| flagellar biosynthesis protein FliP [Ralstonia pickettii 12D]
gi|187728677|gb|ACD29841.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12J]
gi|240867279|gb|ACS64939.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12D]
Length = 249
Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 143/243 (58%), Gaps = 4/243 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
AL P + ++ A T V+T T L P +++M++ F
Sbjct: 10 LVTLALLGAAPAVFAQAQPGLPLLTGTAGGQSYTLPVQTLIFLTSLGFLPAIILMMSSFT 69
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R IIV S+LR +G + PPN V+I LALF+TF+VMSP LD+ PL +N+IT
Sbjct: 70 RIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDNKITVEQ 129
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A+ A P FM TRE DL+LF+ M + I + R LIP+F+ SEL+
Sbjct: 130 AMDTAATPLRQFMLKQTREPDLALFVKMGNMP----AIASPEQTPMRALIPAFVTSELKS 185
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF I +PFL+ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +L +
Sbjct: 186 AFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQ 245
Query: 244 SFI 246
SF+
Sbjct: 246 SFV 248
>gi|160876167|ref|YP_001555483.1| flagellar biosynthesis protein FliP [Shewanella baltica OS195]
gi|217972626|ref|YP_002357377.1| flagellar biosynthesis protein FliP [Shewanella baltica OS223]
gi|160861689|gb|ABX50223.1| flagellar biosynthetic protein FliP [Shewanella baltica OS195]
gi|217497761|gb|ACK45954.1| flagellar biosynthetic protein FliP [Shewanella baltica OS223]
gi|315268363|gb|ADT95216.1| flagellar biosynthetic protein FliP [Shewanella baltica OS678]
Length = 248
Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats.
Identities = 95/247 (38%), Positives = 146/247 (59%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIM 58
M+ + L P A L V P + + ++ + T LS P +LIM
Sbjct: 5 MLALVGLVILLCMPSAWAADGVLPAVTVTTGPDGSTEYSVTMQILLLMTSLSFLPAMLIM 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R IIV SILR +G+ P N V+I ++LFMTF++M+P DR + G++P + Q
Sbjct: 65 LTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDRIYDEGVKPYIEEQ 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+T A ++ EP FM R DL F++++ + I + +LIP+F+
Sbjct: 125 LTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGYKN----IKSPEEAPMSVLIPAFIT 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVL 240
Query: 239 ENLVKSF 245
L SF
Sbjct: 241 GTLANSF 247
>gi|308068668|ref|YP_003870273.1| flagellar biosynthetic protein fliP [Paenibacillus polymyxa E681]
gi|310641559|ref|YP_003946317.1| flagellar transport protein flip [Paenibacillus polymyxa SC2]
gi|305857947|gb|ADM69735.1| Flagellar biosynthetic protein fliP [Paenibacillus polymyxa E681]
gi|309246509|gb|ADO56076.1| Flagellar transport protein FliP [Paenibacillus polymyxa SC2]
Length = 251
Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats.
Identities = 90/244 (36%), Positives = 146/244 (59%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ F+ VT ++ + + + T++S+AP LL+++T
Sbjct: 10 LLLVLFSFISVTAASAEPIPNIDIQVGNSDKGQPGATSLSIILLITVISVAPALLVLMTS 69
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R +IV +RT +G +PPN V++ LALF+T ++M+PT E +QP + IT+
Sbjct: 70 FTRIVIVLGFVRTSLGTQQMPPNQVLVGLALFLTLFIMAPTFSAMNETALQPYLKGDITQ 129
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
+ A+ + + P FM ++TREKDL LFM I +++P++ ISEL
Sbjct: 130 SQALDKASVPIKTFMFSHTREKDLLLFMKYTKMEKPK----NYQDIPLTVMVPAYAISEL 185
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F++GF+I +PFL+ID++V++ +MAMGMMMLPP ISLPFK++ FVL+DGW L+V++L
Sbjct: 186 KTAFQMGFMIFIPFLVIDIVVSSTLMAMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSL 245
Query: 242 VKSF 245
+ SF
Sbjct: 246 LLSF 249
>gi|297538204|ref|YP_003673973.1| flagellar biosynthetic protein FliP [Methylotenera sp. 301]
gi|297257551|gb|ADI29396.1| flagellar biosynthetic protein FliP [Methylotenera sp. 301]
Length = 258
Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats.
Identities = 107/243 (44%), Positives = 153/243 (62%), Gaps = 6/243 (2%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIP--ADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
A L+ P A++ + V +P T ++T + T L+ P L+M+T F
Sbjct: 19 LVLASMLMLPGTALAENGMPLVNALPAAGGGQNYTLSLQTLILLTSLTFLPAALLMMTGF 78
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R IIV S+LR +G S PPN V++ LALF+TF+VMSP +D+ QPL N+IT
Sbjct: 79 TRIIIVLSLLRQALGTQSAPPNQVMVGLALFLTFFVMSPVIDKIYVDAYQPLSENKITMQ 138
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
A+ + A P FM TRE DL+LF++MA I D + +L+P+FM SEL+
Sbjct: 139 EAMDKGAAPLKAFMMKQTREGDLALFVNMAKIEK----IETPDQVPLLVLVPAFMTSELK 194
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+F+IGF I +PFLIIDM+VA+++MAMGMMM+ P+ +SLPFK++ FVL+DGW LL+ +LV
Sbjct: 195 TAFQIGFAIFIPFLIIDMVVASVLMAMGMMMVSPSIVSLPFKLMLFVLVDGWQLLLGSLV 254
Query: 243 KSF 245
+SF
Sbjct: 255 QSF 257
>gi|42524694|ref|NP_970074.1| flagellar biosynthesis protein FliP [Bdellovibrio bacteriovorus
HD100]
gi|39576904|emb|CAE78133.1| flagellar protein required for flagellar formation [Bdellovibrio
bacteriovorus HD100]
Length = 252
Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats.
Identities = 100/234 (42%), Positives = 150/234 (64%), Gaps = 7/234 (2%)
Query: 15 ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
FA+ +L + + + V+ + T+L++AP +LIM+T F R IIV S
Sbjct: 22 SSAFAQVTLPTMNLGFKTTDNPNEVVNAVKLIMVMTVLTLAPAILIMMTGFTRIIIVLSF 81
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LR MG+ +PPN +++ LALF+TF+VM P + GIQP M I++ AI+R P
Sbjct: 82 LRQAMGVQQMPPNQLLVGLALFLTFFVMQPAFNEMNTNGIQPYMAGTISQDQAIERTFAP 141
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
FM N TR+ DL+LF+ ++ T + +L+P+F++SEL+ +F+IGF+I
Sbjct: 142 LRKFMFNQTRDSDLALFIKLSKVEKPKTRA----DVPTMVLVPAFVVSELKTAFQIGFII 197
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LPFL+ID++ A+++MAMGMMMLPP ISLPFK++ FVL+DGW LL+ ++VKSF
Sbjct: 198 FLPFLVIDIVAASVLMAMGMMMLPPVVISLPFKIMLFVLVDGWGLLIGSMVKSF 251
>gi|291617858|ref|YP_003520600.1| FliP [Pantoea ananatis LMG 20103]
gi|291152888|gb|ADD77472.1| FliP [Pantoea ananatis LMG 20103]
gi|327394275|dbj|BAK11697.1| flagellar biosynthetic protein FliP precursor [Pantoea ananatis
AJ13355]
Length = 244
Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats.
Identities = 96/245 (39%), Positives = 151/245 (61%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M R L+ + A+ + + V+T T L+ P +L+M+T
Sbjct: 2 MRRLLPLLPLLLLAPVAHAQLPGLVSQPLANGGQSWSLPVQTLVFITSLTFLPAILLMMT 61
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVF +LR +G S PPN V++ L LF+TF++M+PT D+ + P ++I+
Sbjct: 62 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLTLFLTFFIMAPTFDKIYQDAYLPFSQDKIS 121
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
AI + A+P FM TRE DL+LF +A+++ I + + RIL+P+++ SE
Sbjct: 122 MDVAIDKGAQPLREFMLRQTREADLALFARLANTA----PIAGPEAVPMRILLPAYVTSE 177
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +
Sbjct: 178 LKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 237
Query: 241 LVKSF 245
L +SF
Sbjct: 238 LAQSF 242
>gi|302343742|ref|YP_003808271.1| flagellar biosynthetic protein FliP [Desulfarculus baarsii DSM
2075]
gi|301640355|gb|ADK85677.1| flagellar biosynthetic protein FliP [Desulfarculus baarsii DSM
2075]
Length = 258
Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats.
Identities = 92/238 (38%), Positives = 146/238 (61%), Gaps = 11/238 (4%)
Query: 15 ELVFAKSSLHDVM-------NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
A+ + A + ++ + T+L++AP +L+M T F R +
Sbjct: 24 STALAQEGAPLNLPSITLGAQNAASPEQVSTALQIVILLTVLTLAPAILVMTTSFVRIAV 83
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
FS+LR +G VPP +I+ L+LF+TF++M+P D+ + ++P ++ I+++ +
Sbjct: 84 SFSLLRNALGAPQVPPTQIIVGLSLFLTFFIMAPVFDQVHDKALKPYLDGAISQSAFFEE 143
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TR+KDL LFM +A + + L+P+F+ISELR +FEI
Sbjct: 144 AAKPMREFMLKQTRKKDLGLFMKIAGEDRPRNE----QDVTMSALVPAFVISELRTAFEI 199
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GFL+ +PFL+IDM+VA+++++MGMMMLPP ISLPFK++ FVL+DGW LLV +LV+SF
Sbjct: 200 GFLLYVPFLVIDMVVASVLLSMGMMMLPPVMISLPFKLMLFVLVDGWYLLVGSLVRSF 257
>gi|328474450|gb|EGF45255.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus 10329]
Length = 289
Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats.
Identities = 93/227 (40%), Positives = 139/227 (61%), Gaps = 5/227 (2%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
A + P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 66 AGIPAFTMTTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGL 125
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
P N VII +ALF+TF+VMSP L+ + IQP +N Q+T A P FM
Sbjct: 126 QQTPSNQVIIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLK 185
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
TR KDL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLII
Sbjct: 186 QTRIKDLETFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLII 240
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
D++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 241 DLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287
>gi|296186695|ref|ZP_06855097.1| flagellar biosynthetic protein FliP [Clostridium carboxidivorans
P7]
gi|296048732|gb|EFG88164.1| flagellar biosynthetic protein FliP [Clostridium carboxidivorans
P7]
Length = 258
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 96/244 (39%), Positives = 148/244 (60%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I F A + F ++ ++ + ++ + TIL+I P ++M+T
Sbjct: 18 IFLMFAASKVYAAPEAFPIPKVNISVDNASTPQQYVGNIKLLIMLTILTILPSFIMMMTS 77
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VF LR MG PPN ++I LALF+T ++M P + IQP M N+IT+
Sbjct: 78 FVRIIVVFGFLRGAMGTQQSPPNTILIGLALFLTVFIMQPVYSKVNTNAIQPYMQNKITQ 137
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
AI A+P FM T +KD LF+D A +++ T D+ +++P+FMISEL
Sbjct: 138 EQAIDEGAKPLRQFMLKYTYKKDFQLFIDTAKVNYKITK----DNAPLYVVVPAFMISEL 193
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F IGF++ +PF+IID++VA+++M+MGM MLPP +SLPFK++ FV++DGW LLV++L
Sbjct: 194 KTAFMIGFMLYIPFMIIDLVVASVLMSMGMFMLPPAMVSLPFKLLLFVMVDGWYLLVKSL 253
Query: 242 VKSF 245
V SF
Sbjct: 254 VSSF 257
>gi|297569685|ref|YP_003691029.1| flagellar biosynthetic protein FliP [Desulfurivibrio alkaliphilus
AHT2]
gi|296925600|gb|ADH86410.1| flagellar biosynthetic protein FliP [Desulfurivibrio alkaliphilus
AHT2]
Length = 247
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 98/225 (43%), Positives = 148/225 (65%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
S+ + + ++ +FT+L++AP +L+M+TCF R I+VFS LR +G
Sbjct: 26 PSIQIGIEEATSPREVSVLIELLLVFTVLAMAPAILLMMTCFTRLIVVFSFLRNAIGTQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN V++ LA+F+T ++M+P + + I P M +I A+Q AEP FM T
Sbjct: 86 MPPNQVLVGLAMFLTLFIMAPVFSQINQTAIGPYMEEEIGAEEALQLAAEPIREFMFKQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL LF+ +A + T D + ILIP+FMISEL+ +F IGF++ LPFL+IDM
Sbjct: 146 REKDLELFLGLARAPRPQTK----DDVPTHILIPAFMISELKTAFTIGFVLFLPFLVIDM 201
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++++MGMMMLPP ++LPFK++ FVL+DGW L+V +LV+SF
Sbjct: 202 VVASVLLSMGMMMLPPIMVALPFKILLFVLVDGWYLIVGSLVRSF 246
>gi|209522296|ref|ZP_03270923.1| flagellar biosynthetic protein FliP [Burkholderia sp. H160]
gi|209497272|gb|EDZ97500.1| flagellar biosynthetic protein FliP [Burkholderia sp. H160]
Length = 273
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 96/235 (40%), Positives = 146/235 (62%), Gaps = 7/235 (2%)
Query: 15 ELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
L FA+++ P + + V+T + T+LS P +++M+T F R +IV S+
Sbjct: 43 TLSFAQTAGLPAFTTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIVIVLSL 102
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LR +G + PPN V++ LALF+T +VMSP LD++ G +P + A+ R P
Sbjct: 103 LRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYNEGYKPFSEGTMPMDQAVSRGVAP 162
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
F FM TRE DL+LF ++H + + + +L+PSF+ SEL+ F IGF I
Sbjct: 163 FKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFTIGFTI 218
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 219 FIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 273
>gi|220929452|ref|YP_002506361.1| flagellar biosynthesis protein FliP [Clostridium cellulolyticum
H10]
gi|219999780|gb|ACL76381.1| flagellar biosynthetic protein FliP [Clostridium cellulolyticum
H10]
Length = 266
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 98/254 (38%), Positives = 146/254 (57%), Gaps = 10/254 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLH-----DVMNIPADLSISTWIVRTFGIFTILSIAPIL 55
M +F + A+ ++ + +D + ++ T+L+IAP +
Sbjct: 12 MFTAILTVIFCLMGGQALAEPTVSVTRDGINIGASSDPKEVSSSIQLLIALTVLAIAPSI 71
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
LIM+T F R II+ S LR +G +PPN V+I LALF+T +VMSP L E QP
Sbjct: 72 LIMMTGFTRIIIILSFLRNALGTQQMPPNQVLIGLALFITLFVMSPVLSDINENAFQPYS 131
Query: 116 NNQITETTAIQRVAEPFWVFMRNNT----REKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
+ +IT+ AI + ++ +M REKDL LFM + + + I
Sbjct: 132 DGKITQQQAIDKSSQTIKTWMVKQIFSNNREKDLELFMTLGGQKDP-IRVQDASKLSLTI 190
Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
+ P+F+ISEL +F+ GFLI LPFLIIDM+V++ +M+MGMMMLPP ISLPFK++ FVL+
Sbjct: 191 VAPAFLISELTIAFKFGFLIFLPFLIIDMVVSSALMSMGMMMLPPIMISLPFKILLFVLV 250
Query: 232 DGWSLLVENLVKSF 245
DGWS+L ++++ SF
Sbjct: 251 DGWSMLTQSIITSF 264
>gi|114570490|ref|YP_757170.1| flagellar biosynthesis protein FliP [Maricaulis maris MCS10]
gi|114340952|gb|ABI66232.1| flagellar biosynthetic protein FliP [Maricaulis maris MCS10]
Length = 251
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 110/243 (45%), Positives = 163/243 (67%), Gaps = 5/243 (2%)
Query: 4 YCFFALFLVTPEL-VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
+CF L L F + ++ + +++ +++ + T+LS+AP ++IM T F
Sbjct: 9 FCFSLFLLGVITLIGFQADAQTVTIDAGQEGALTERVLQLMALLTVLSLAPSIIIMTTSF 68
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R I+V S+LRTG+G+ PPN V++SLA+FMT ++M+P +S + GIQPL+N +I T
Sbjct: 69 VRIIVVLSLLRTGLGLQQSPPNAVLVSLAIFMTGFIMAPVFTQSYDEGIQPLLNEEIELT 128
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
A P FM ++ RE DL+LF+DM+ + + + I+ P+FMISELR
Sbjct: 129 EAFDLSTAPLKTFMLSHVREDDLALFIDMSQEAVP----ESPEATSFWIVAPAFMISELR 184
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
R+FEIGFL+ +PFLIID++VA+I+M+MGMMMLPP ISLPFK+IFFVL+DGW L+V +LV
Sbjct: 185 RAFEIGFLLFIPFLIIDLVVASILMSMGMMMLPPIVISLPFKLIFFVLVDGWRLVVGSLV 244
Query: 243 KSF 245
+SF
Sbjct: 245 QSF 247
>gi|308184472|ref|YP_003928605.1| flagellar biosynthesis protein FliP [Helicobacter pylori SJM180]
gi|308060392|gb|ADO02288.1| flagellar biosynthesis protein FliP [Helicobacter pylori SJM180]
Length = 301
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 106/244 (43%), Positives = 163/244 (66%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P+D + + T+L +AP L++++T
Sbjct: 59 FLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTS 118
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 119 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 178
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 179 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 234
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 235 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 294
Query: 242 VKSF 245
V SF
Sbjct: 295 VASF 298
>gi|167560941|ref|ZP_02353857.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis
EO147]
gi|167568200|ref|ZP_02361074.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis
C6786]
Length = 253
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 93/224 (41%), Positives = 140/224 (62%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ P + + V+T + T+LS P +L+M+T F R IIV S+LR +G S
Sbjct: 33 PALNSAPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTAST 92
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN V++ LALF+T +VMSP LD++ +P + A+QR PF FM TR
Sbjct: 93 PPNQVLVGLALFLTLFVMSPVLDKAYADAYKPFSEGTLQMDQAVQRGTAPFKGFMLKQTR 152
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
E DL+LF ++ + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+
Sbjct: 153 ETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMV 208
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 209 VASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 252
>gi|54307253|ref|YP_128273.1| flagellar biosynthesis protein FliP [Photobacterium profundum SS9]
gi|46911673|emb|CAG18471.1| Putative flagellar assembly protein [Photobacterium profundum SS9]
Length = 242
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 87/245 (35%), Positives = 139/245 (56%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M L+ FA+ +N P + ++ F + T L+ P +L+M T
Sbjct: 1 MRLLGILLTLLLFSHPAFAQDLPLLTINGPNGQEEYSVKLQIFLLMTALAFLPAMLLMTT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV ILR MG+ PPN V++ +AL ++ ++M P + + + P ++T
Sbjct: 61 SFTRIIIVLGILRQAMGLQQSPPNRVLVGIALTLSLFIMRPVIYDIHDNAVVPYQKGEMT 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A + +P FM TRE DL + +A + D +++ +++P+F++SE
Sbjct: 121 MFEAAKVAEQPLRQFMLQQTRETDLEQILRIADEPTPD----NVDDLDFLLVMPAFILSE 176
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FV++DGWS+ V
Sbjct: 177 LKTAFQIGFMLFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKLMVFVMVDGWSMTVGT 236
Query: 241 LVKSF 245
L SF
Sbjct: 237 LSASF 241
>gi|114332025|ref|YP_748247.1| flagellar biosynthesis protein FliP [Nitrosomonas eutropha C91]
gi|114309039|gb|ABI60282.1| flagellar biosynthetic protein FliP [Nitrosomonas eutropha C91]
Length = 261
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 93/244 (38%), Positives = 152/244 (62%), Gaps = 7/244 (2%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIP---ADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
C L +V VFA+ + + + + ++T + T ++ P ++M++
Sbjct: 20 CIILLLVVGISPVFAQKAGLPAITSTPAAGGGTTYSLSLQTLLLLTSMTFLPATVLMMSS 79
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIV S+LR +G S PPN V++ LALF++F++MSP +D+ P ++I+
Sbjct: 80 FTRIIIVLSLLRQALGTQSSPPNQVLVGLALFLSFFIMSPVIDKMYTEAYLPFSEDKISI 139
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + ++P +FM TRE D++LF ++ S +I D + +IL+P+++ SEL
Sbjct: 140 IEAMDKASDPLKIFMLRQTRETDIALFARISGSE----EIESPDQVPMKILVPAYITSEL 195
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF++ +PFLIIDM+VA+ +MAMGMMML P ISLPFK++ FVL+DGW LL+ +L
Sbjct: 196 KTAFQIGFIVFIPFLIIDMVVASTLMAMGMMMLSPMIISLPFKLMLFVLVDGWHLLIGSL 255
Query: 242 VKSF 245
+SF
Sbjct: 256 TQSF 259
>gi|308273529|emb|CBX30131.1| Flagellar biosynthetic protein fliP [uncultured Desulfobacterium
sp.]
Length = 225
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 97/229 (42%), Positives = 147/229 (64%), Gaps = 4/229 (1%)
Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
A SL + + + +++ + T+LS+AP +LIM+T F R IVFS LR +G
Sbjct: 1 MAFPSLRIGVEPGENPEQVSVLIQILFLLTVLSLAPAILIMMTPFTRLAIVFSFLRQALG 60
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
P N +I L+LF+TF++M P +QP + +I++ TA++ P FM
Sbjct: 61 TQQTPSNQIIAGLSLFITFFIMMPQWQEINNNALQPYLEKKISQETALKEAMIPIRKFMF 120
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
TREKDL++F+ M+ S N + I LIP+F+ISEL+ +F IGF++ +PFLI
Sbjct: 121 RQTREKDLAIFVKMSKSEKPN----SPEDISMTTLIPAFVISELKTAFIIGFVLFVPFLI 176
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
IDM+VA+++++MGMMMLPP ISLPFK++ FVL+DGW+L+V ++VKSF+
Sbjct: 177 IDMVVASVLLSMGMMMLPPILISLPFKLMLFVLVDGWNLIVGSMVKSFV 225
>gi|262166224|ref|ZP_06033961.1| flagellar biosynthesis protein FliP [Vibrio mimicus VM223]
gi|262025940|gb|EEY44608.1| flagellar biosynthesis protein FliP [Vibrio mimicus VM223]
Length = 299
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 140/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 79 PAFTMTTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 138
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF++M+P ++ E +QP +N QI+ A EP FM TR
Sbjct: 139 PSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTR 198
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 199 VKDLETFVEMSG-----SQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 253
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 254 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297
>gi|167750712|ref|ZP_02422839.1| hypothetical protein EUBSIR_01690 [Eubacterium siraeum DSM 15702]
gi|167656391|gb|EDS00521.1| hypothetical protein EUBSIR_01690 [Eubacterium siraeum DSM 15702]
Length = 307
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 91/222 (40%), Positives = 133/222 (59%), Gaps = 9/222 (4%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
+ + + T+LS+AP LL+M+T F R II FS LRT M S PPN+V+ L+L
Sbjct: 84 GVDGSQSLEVILLVTVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQSTPPNMVLTGLSL 143
Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
F+T ++M P E QP ++T AI +P FM T D+ F+D+
Sbjct: 144 FLTIFIMWPVFSEINETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLK 203
Query: 153 HSSHRNTDITKNDHIE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
S + D+I + +IP+F++SEL+R+F++GFLI +PFL+ID++V+
Sbjct: 204 GQSMSDVTGGATDNITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVS 263
Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ +MAMGMMMLPP ISLPFK+I FVL+DGW L+V +V S+
Sbjct: 264 STLMAMGMMMLPPAMISLPFKIILFVLVDGWQLMVGTIVNSY 305
>gi|291532049|emb|CBK97634.1| flagellar biosynthetic protein FliP [Eubacterium siraeum 70/3]
Length = 307
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 90/222 (40%), Positives = 132/222 (59%), Gaps = 9/222 (4%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
+ + + T+LS+AP LL+M+T F R II FS LRT M PPN+V+ L+L
Sbjct: 84 GVDGSQSLEVILLVTVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQPTPPNMVLTGLSL 143
Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
F+T ++M P E QP ++T AI +P FM T D+ F+D+
Sbjct: 144 FLTIFIMWPVFSEINETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLK 203
Query: 153 HSSHRNTDITKNDHIE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
S + D+I + +IP+F++SEL+R+F++GFLI +PFL+ID++V+
Sbjct: 204 GQSMSDVTGGATDNITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVS 263
Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ +MAMGMMMLPP ISLPFK+I FVL+DGW L+V +V S+
Sbjct: 264 STLMAMGMMMLPPAMISLPFKIILFVLVDGWQLMVGTIVNSY 305
>gi|118588703|ref|ZP_01546111.1| flagellar biosynthesis protein P [Stappia aggregata IAM 12614]
gi|118438689|gb|EAV45322.1| flagellar biosynthesis protein P [Stappia aggregata IAM 12614]
Length = 237
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 107/240 (44%), Positives = 163/240 (67%), Gaps = 6/240 (2%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
AL V A+ + D +++ V+ + T+LS+AP +L+MVT F R
Sbjct: 1 MTALLAVLVGPAAAQE---ISVGFGEDTTLTERAVQMVILLTVLSLAPSILVMVTSFTRI 57
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
++V S+LR+ +G+ + PPN+V++SLALF++ ++M PTL S + G+QPL++ I A
Sbjct: 58 VVVLSLLRSAIGLQTAPPNMVMVSLALFLSAFIMMPTLQASYDAGVQPLIDGDIELEQAF 117
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+R ++PF FM + REKDL+LF +++ + + + L+P+FMISELRR+F
Sbjct: 118 ERASDPFRTFMLSQVREKDLALFEELSGA---EEAPESPEDLSMATLVPAFMISELRRAF 174
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
EIGFL+ LPFLIID+++A+++M+MGMMMLPP ISLPFK+IFFVL+DGW+L+ +LVKSF
Sbjct: 175 EIGFLLYLPFLIIDLVIASVLMSMGMMMLPPVVISLPFKLIFFVLVDGWNLVAGSLVKSF 234
>gi|332161332|ref|YP_004297909.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318605253|emb|CBY26751.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325665562|gb|ADZ42206.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 250
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 91/228 (39%), Positives = 142/228 (62%), Gaps = 4/228 (1%)
Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
A+ + + V+T T LS P L+M+T F R IIV +LR +G
Sbjct: 25 MAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNALG 84
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P FM
Sbjct: 85 TPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFML 144
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFLI
Sbjct: 145 RQTRESDLALYARLANLP----PLEGPEVVPLRILLPAYVTSELKTAFQIGFTVFIPFLI 200
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
ID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 201 IDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 248
>gi|261407968|ref|YP_003244209.1| flagellar biosynthetic protein FliP [Paenibacillus sp. Y412MC10]
gi|329929296|ref|ZP_08283049.1| flagellar biosynthetic protein FliP [Paenibacillus sp. HGF5]
gi|261284431|gb|ACX66402.1| flagellar biosynthetic protein FliP [Paenibacillus sp. Y412MC10]
gi|328936665|gb|EGG33108.1| flagellar biosynthetic protein FliP [Paenibacillus sp. HGF5]
Length = 250
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 94/242 (38%), Positives = 146/242 (60%), Gaps = 5/242 (2%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSI-APILLIMVTCFP 63
F L+ FA + + I + + + + AP +L+++T F
Sbjct: 11 IFIMFGLLFSHTAFADPIPNIDIQIGNEGDAPGTSSLSLILLITILSIAPAILVLMTSFT 70
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R +IV +RT +G PPN V+I LALF+T +VM+PTL E+ +QP + +IT+
Sbjct: 71 RIVIVLGFVRTSLGTQQTPPNQVLIGLALFLTLFVMAPTLSSMNEVALQPYLKGEITQAE 130
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A+ + +P FM +TREKDL LFM+ + + I +L+P+F ISEL+
Sbjct: 131 ALDKAQDPMKKFMFAHTREKDLLLFMNYTGAEKP----ESYEDIPLTVLVPAFAISELKT 186
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
F++GF+I +PFL+ID++VA+++MAMGMMMLPP ISLPFK++ FVL+DGW L+V++++
Sbjct: 187 GFQMGFMIFIPFLVIDIVVASVLMAMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSMLM 246
Query: 244 SF 245
SF
Sbjct: 247 SF 248
>gi|126175118|ref|YP_001051267.1| flagellar biosynthesis protein FliP [Shewanella baltica OS155]
gi|153001442|ref|YP_001367123.1| flagellar biosynthesis protein FliP [Shewanella baltica OS185]
gi|125998323|gb|ABN62398.1| flagellar biosynthetic protein FliP [Shewanella baltica OS155]
gi|151366060|gb|ABS09060.1| flagellar biosynthetic protein FliP [Shewanella baltica OS185]
Length = 248
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 94/247 (38%), Positives = 146/247 (59%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIM 58
++ + L P A L V P + + ++ + T LS P +LIM
Sbjct: 5 ILALVGLVILLCMPSAWAADGVLPAVTVTTGPDGSTEYSVTMQILLLMTSLSFLPAMLIM 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R IIV SILR +G+ P N V+I ++LFMTF++M+P DR + G++P + Q
Sbjct: 65 LTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDRIYDEGVKPYIEEQ 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+T A ++ EP FM R DL F++++ + I + +LIP+F+
Sbjct: 125 LTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGYKN----IKSPEEAPMSVLIPAFIT 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVL 240
Query: 239 ENLVKSF 245
L SF
Sbjct: 241 GTLANSF 247
>gi|304409949|ref|ZP_07391568.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183]
gi|307302338|ref|ZP_07582096.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175]
gi|304351358|gb|EFM15757.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183]
gi|306914376|gb|EFN44797.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175]
Length = 248
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 93/247 (37%), Positives = 146/247 (59%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIM 58
++ + L P A L V P + + ++ + T LS P +LIM
Sbjct: 5 ILALVGLVILLCMPSAWAADGVLPAVTVTTGPDGSTEYSVTMQILLLMTSLSFLPAMLIM 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R IIV SILR +G+ P N V+I ++LFMTF++M+P +R + G++P + Q
Sbjct: 65 LTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFERIYDEGVKPYIEEQ 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+T A ++ EP FM R DL F++++ + I + +LIP+F+
Sbjct: 125 LTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGYKN----IKSPEEAPMSVLIPAFIT 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVL 240
Query: 239 ENLVKSF 245
L SF
Sbjct: 241 GTLANSF 247
>gi|258622510|ref|ZP_05717532.1| flagellar assembly protein [Vibrio mimicus VM573]
gi|262173376|ref|ZP_06041053.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451]
gi|258585210|gb|EEW09937.1| flagellar assembly protein [Vibrio mimicus VM573]
gi|261890734|gb|EEY36721.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451]
Length = 252
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 83/242 (34%), Positives = 131/242 (54%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+V P ++ A + ++ + T LS P ++M T F
Sbjct: 14 IILAFCLVVFPTYAADNGLTILSVSDGATEQEYSVKLQILLLMTALSFLPAFILMATSFT 73
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R I+V +ILR +G+ PPN V++ +AL +T +M P + QP N +IT
Sbjct: 74 RIIVVLAILRQALGLQQTPPNRVLVGIALTLTLLIMRPVWTDIYKNAFQPYDNGEITLVQ 133
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +P FM T + L + +A+ + I + I++P+F+ISEL+
Sbjct: 134 AFSVAEKPVREFMLAQTHQNSLEQMLRIANEP----IDQNVEDISFAIVLPAFVISELKT 189
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V +L
Sbjct: 190 AFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGSLSA 249
Query: 244 SF 245
SF
Sbjct: 250 SF 251
>gi|315648123|ref|ZP_07901224.1| flagellar biosynthetic protein FliP [Paenibacillus vortex V453]
gi|315276769|gb|EFU40112.1| flagellar biosynthetic protein FliP [Paenibacillus vortex V453]
Length = 250
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 93/242 (38%), Positives = 148/242 (61%), Gaps = 5/242 (2%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSI-APILLIMVTCFP 63
F + FA + + I + + + + AP +L+++T F
Sbjct: 11 IFILFGFLFSHTAFADPIPNIDIQIGNEGDTPGTSSLSLILLITILSIAPAILVLMTSFT 70
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R +IV +RT +G PPN V+I LALF+T +VM+PTL ++ +QP + +I++T
Sbjct: 71 RIVIVLGFVRTSLGTMQTPPNQVLIGLALFLTLFVMAPTLSSINDVALQPYLKGEISQTE 130
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A+ + +P FM ++TREKDL LFM+ + T + I +L+P+F ISEL+
Sbjct: 131 ALDKAQDPMKKFMFSHTREKDLLLFMNYTGAEKPETY----EDIPLTVLVPAFAISELKT 186
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
F++GF+I +PFL+ID++VA+++MAMGMMMLPP ISLPFK++ FVL+DGW L+V++++
Sbjct: 187 GFQMGFMIFIPFLVIDIVVASVLMAMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSMLM 246
Query: 244 SF 245
SF
Sbjct: 247 SF 248
>gi|74317628|ref|YP_315368.1| flagellar biosynthesis protein FliP [Thiobacillus denitrificans
ATCC 25259]
gi|74057123|gb|AAZ97563.1| flagellar transport protein FliP [Thiobacillus denitrificans ATCC
25259]
Length = 253
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 103/235 (43%), Positives = 143/235 (60%), Gaps = 7/235 (2%)
Query: 14 PELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
P A+S+ T ++T + T LS P L+M+T F R IIV S
Sbjct: 22 PTFALAQSAGLPAFTSTPSGGGGQTYTLSLQTLLLLTSLSFLPAALLMMTSFTRIIIVLS 81
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
+LR +G S PPN V+I LALF+T +VM PT D+ QPL N+I A+ + A
Sbjct: 82 LLRHALGTQSSPPNQVLIGLALFLTLFVMGPTFDKIYVEAYQPLAENRIQMQEALDKGAV 141
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM TRE DL+LF+ M+ S T I R+LIP+++ SEL+ +F+IGF
Sbjct: 142 PLRAFMLKQTRESDLALFVKMSRSPAPKTAA----DIPMRVLIPAYITSELKTAFQIGFA 197
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ +PFLIIDM+VA+I+MAMGMMM+ P ++LPFK+I FVL+DGW+LL+ +L +SF
Sbjct: 198 VFIPFLIIDMVVASILMAMGMMMVSPAIVALPFKIILFVLVDGWNLLLGSLAQSF 252
>gi|30248477|ref|NP_840547.1| flagellar biosynthesis protein FliP [Nitrosomonas europaea ATCC
19718]
gi|30138363|emb|CAD84372.1| Flagella transport protein FliP family [Nitrosomonas europaea ATCC
19718]
Length = 268
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 93/245 (37%), Positives = 149/245 (60%), Gaps = 7/245 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIP---ADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+ V A+ + + + T ++T + T L+ P +++M++
Sbjct: 26 ILLLVAGIGVAGPVLAQKTGFPAVTSTPAAGGGATYTLSLQTLLLLTSLTFLPAVILMMS 85
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV S+LR MG S PPN V++ LALF++F++MSP +D+ P ++I+
Sbjct: 86 SFTRIIIVLSLLRQAMGTQSSPPNQVLLGLALFLSFFIMSPVIDKVYTEAYLPFSEDKIS 145
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+++ +P FM TRE D++LF +A N +I D + +IL+P+++ SE
Sbjct: 146 IVEAMEKAGDPLKSFMLRQTREADIALFARIA----ENGEIESPDQVPMKILVPAYITSE 201
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF++ +PFLIIDM+VA+ +MAMGMMML P ISLPFK++ FVL+DGW+LL+ +
Sbjct: 202 LKTAFQIGFVVFIPFLIIDMVVASTLMAMGMMMLSPMIISLPFKLMLFVLVDGWNLLIGS 261
Query: 241 LVKSF 245
L +SF
Sbjct: 262 LTQSF 266
>gi|293605018|ref|ZP_06687413.1| flagellar biosynthetic protein FliP [Achromobacter piechaudii ATCC
43553]
gi|292816587|gb|EFF75673.1| flagellar biosynthetic protein FliP [Achromobacter piechaudii ATCC
43553]
Length = 263
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 102/247 (41%), Positives = 149/247 (60%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA--DLSISTWIVRTFGIFTILSIAPILLIM 58
M+ P V A+++L + P + ++T + T LS P L+M
Sbjct: 19 MLAAAAVLGLAFFPAGVVAQATLPALTATPGPNGSETYSLSMQTMLLMTSLSFLPAALLM 78
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R IIV +LR+ MG PPN V+I LALF+TFY MSP D+ +PL
Sbjct: 79 MTGFTRIIIVLGLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYADAYKPLSEGS 138
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
I TA++R A P FM + TRE DLSLF ++A + + RIL+P+F+
Sbjct: 139 IQFETAVERAAGPLRTFMLHQTRENDLSLFANLAKQP----ALEDPSQVPLRILVPAFIT 194
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+
Sbjct: 195 SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLM 254
Query: 239 ENLVKSF 245
+L +SF
Sbjct: 255 GSLAQSF 261
>gi|28901397|ref|NP_801052.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus RIMD
2210633]
gi|153835929|ref|ZP_01988596.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
AQ3810]
gi|260362951|ref|ZP_05775820.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus K5030]
gi|260880238|ref|ZP_05892593.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
AN-5034]
gi|260895355|ref|ZP_05903851.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
Peru-466]
gi|28809944|dbj|BAC62885.1| putative flagellar assembly protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149750683|gb|EDM61428.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
AQ3810]
gi|308085562|gb|EFO35257.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
Peru-466]
gi|308092077|gb|EFO41772.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
AN-5034]
gi|308112304|gb|EFO49844.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus K5030]
gi|328469331|gb|EGF40277.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus 10329]
Length = 252
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 81/235 (34%), Positives = 128/235 (54%), Gaps = 4/235 (1%)
Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
P + + + ++ + T LS P ++M T F R I+V +
Sbjct: 21 FAFPTMAADNGLTILSVTDGDAQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLA 80
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
ILR +G+ PPN V++ +AL +T +M P E QP N +IT A +
Sbjct: 81 ILRQALGLQQSPPNRVLVGIALTLTLLIMRPVWTDIYENAFQPYDNGEITLVQAFSVAEK 140
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM T + L + +A+ K + I + +++P+F+ISEL+ +F+IGF+
Sbjct: 141 PVRNFMLAQTHQSSLEQMLRIANEPLD----QKVEDISFAVVLPAFVISELKTAFQIGFM 196
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ +PFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGW++ V L SF
Sbjct: 197 LFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVGTLSASF 251
>gi|262404469|ref|ZP_06081024.1| flagellar biosynthesis protein FliP [Vibrio sp. RC586]
gi|262349501|gb|EEY98639.1| flagellar biosynthesis protein FliP [Vibrio sp. RC586]
Length = 299
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 139/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 79 PAFTMTTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 138
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF++M+P ++ E +QP +N QI+ A EP FM TR
Sbjct: 139 PSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTR 198
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 199 VKDLETFVEMSG-----AQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 253
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 254 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297
>gi|4322007|gb|AAD15910.1| polar flagellar assembly protein FliP [Vibrio parahaemolyticus]
Length = 289
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 93/227 (40%), Positives = 139/227 (61%), Gaps = 5/227 (2%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
A + P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 66 AGIPAFTMTTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGL 125
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
P N VII +ALF+TF+VMSP L+ + IQP +N Q+T A P FM
Sbjct: 126 QQTPSNQVIIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLK 185
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
TR KDL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLII
Sbjct: 186 QTRIKDLETFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLII 240
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
D++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 241 DLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287
>gi|153803026|ref|ZP_01957612.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-3]
gi|124121424|gb|EAY40167.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-3]
Length = 299
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 89/224 (39%), Positives = 137/224 (61%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 79 PAFTMTTNSDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 138
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF++M+P ++ E +QP +N QIT A EP FM TR
Sbjct: 139 PSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTR 198
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 199 VNDLETFVEMSG-----AQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 253
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 254 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297
>gi|91223205|ref|ZP_01258471.1| putative flagellar assembly protein [Vibrio alginolyticus 12G01]
gi|269967106|ref|ZP_06181173.1| flagellar assembly protein [Vibrio alginolyticus 40B]
gi|91192018|gb|EAS78281.1| putative flagellar assembly protein [Vibrio alginolyticus 12G01]
gi|269828243|gb|EEZ82510.1| flagellar assembly protein [Vibrio alginolyticus 40B]
Length = 252
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 78/235 (33%), Positives = 128/235 (54%), Gaps = 4/235 (1%)
Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
P + ++ + ++ + T LS P ++M T F R ++V +
Sbjct: 21 FAFPTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMATSFTRIVVVLA 80
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
ILR +G+ PPN V++ +AL +T +M P E QP N +IT A +
Sbjct: 81 ILRQALGLQQSPPNRVLVGIALALTLLIMRPVWSDIYENAFQPYDNGEITLIQAFSVAEK 140
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM T + L + +A+ + I + +++P+F+ISEL+ +F+IGF+
Sbjct: 141 PVREFMLAQTHQSSLEQMLRIANEPLD----QNVEDISFAVVLPAFVISELKTAFQIGFM 196
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ +PFL+ID++VA+++MAMGMMML P +SLPFK++ FVL+DGW++ V L SF
Sbjct: 197 LFIPFLVIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVGTLSASF 251
>gi|218528509|ref|YP_002419325.1| flagellar biosynthetic protein FliP [Methylobacterium
chloromethanicum CM4]
gi|240137103|ref|YP_002961572.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
AM1]
gi|218520812|gb|ACK81397.1| flagellar biosynthetic protein FliP [Methylobacterium
chloromethanicum CM4]
gi|240007069|gb|ACS38295.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
AM1]
Length = 253
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 102/215 (47%), Positives = 152/215 (70%), Gaps = 4/215 (1%)
Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
+ ++ + T+L++AP +L+M T F R ++V SILR+ +G + PPN V++SL
Sbjct: 41 GAGGTTERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSL 100
Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
ALF+T +VM+PT + G++PLM QI+++ A +R + PF FM N REKDL LF+D
Sbjct: 101 ALFLTAFVMAPTAREAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLD 160
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
MA + I I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMG
Sbjct: 161 MARQPAP----AGPEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMG 216
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MMMLPP +++LPFK+IFFVL+DGW+L+ +L++S+
Sbjct: 217 MMMLPPATVALPFKLIFFVLVDGWTLVAGSLIQSY 251
>gi|258621114|ref|ZP_05716148.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM573]
gi|258626187|ref|ZP_05721035.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM603]
gi|262170890|ref|ZP_06038568.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451]
gi|258581542|gb|EEW06443.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM603]
gi|258586502|gb|EEW11217.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM573]
gi|261891966|gb|EEY37952.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451]
Length = 299
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 140/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 79 PAFTMTTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 138
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF++M+P ++ E +QP +N QI+ A EP FM TR
Sbjct: 139 PSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTR 198
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 199 IKDLETFVEMSG-----SQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 253
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 254 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297
>gi|307264883|ref|ZP_07546445.1| flagellar biosynthetic protein FliP [Thermoanaerobacter wiegelii
Rt8.B1]
gi|326389467|ref|ZP_08211034.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus
JW 200]
gi|306920141|gb|EFN50353.1| flagellar biosynthetic protein FliP [Thermoanaerobacter wiegelii
Rt8.B1]
gi|325994472|gb|EGD52897.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus
JW 200]
Length = 221
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 94/224 (41%), Positives = 146/224 (65%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+L D ++ S ++ + T+L++AP +LIM+T F R ++V S LR +G+ +
Sbjct: 2 NLGDWVSSVTAPSNIATSLQIVLLLTVLTLAPSILIMMTSFTRIVVVLSFLRNALGLQQM 61
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN V+I LALF+T Y+M+P I+P +IT+ A Q +P FM TR
Sbjct: 62 PPNQVLIGLALFLTLYIMAPVGQDINNNAIKPYTEGKITQEEAYQNAIKPLKNFMLKQTR 121
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+ DL+LF+ +A + + + R++IPSF+ISEL+ +FEIGF+I +PFLIID++
Sbjct: 122 QSDLNLFVSLAKIK-----VNNAEDLPMRVVIPSFIISELKTAFEIGFIIYIPFLIIDIV 176
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++M+MGM MLPP ISLPFKV+ F+L+DGW+L+V++L+ F
Sbjct: 177 VASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220
>gi|156975420|ref|YP_001446327.1| flagellar biosynthesis protein FliP [Vibrio harveyi ATCC BAA-1116]
gi|156527014|gb|ABU72100.1| hypothetical protein VIBHAR_03151 [Vibrio harveyi ATCC BAA-1116]
Length = 289
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 91/224 (40%), Positives = 137/224 (61%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 69 PAFTMTTNADGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 128
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF+VMSP L+ + IQP +N Q+T A P FM TR
Sbjct: 129 PSNQVIIGIALFLTFFVMSPVLNEINDNAIQPYLNEQVTARQAFDAAQVPMKAFMLKQTR 188
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 189 IKDLETFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 243
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 244 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287
>gi|327537629|gb|EGF24341.1| flagellar biosynthesis protein FliP [Rhodopirellula baltica WH47]
Length = 316
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 85/219 (38%), Positives = 136/219 (62%), Gaps = 4/219 (1%)
Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
++ + T+LS+AP +L+M TC+ R IIV +LR +G+ S+PP+ V+ S+
Sbjct: 94 TSPEGLAGSLQVMLLLTVLSLAPAILLMTTCYVRIIIVLGLLRQAIGLQSLPPSQVMTSV 153
Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRNNTRE--KDLS 146
ALFMT +VM+P R + I+P + + +T A ++ A P FM RE +
Sbjct: 154 ALFMTLFVMTPVWTRVYDDAIKPYTDPEVEMTLEEAFEKGAIPIREFMAWQIREARNEDD 213
Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
+ + + + D + R+L+P+F++SEL+ SF +GF I LPFLI+D++VA++
Sbjct: 214 VVLFYGYMDPDAVVPSTFDDVPLRVLLPAFILSELKTSFLMGFQIYLPFLIVDLVVASVT 273
Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++MGM+MLPP I+LPFK++ FVL+DGW L+VE L+ SF
Sbjct: 274 ISMGMLMLPPAVIALPFKLLLFVLVDGWRLVVEMLMNSF 312
>gi|254433683|ref|ZP_05047191.1| flagellar biosynthetic protein FliP [Nitrosococcus oceani AFC27]
gi|207090016|gb|EDZ67287.1| flagellar biosynthetic protein FliP [Nitrosococcus oceani AFC27]
Length = 243
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 95/233 (40%), Positives = 146/233 (62%), Gaps = 4/233 (1%)
Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
V T ++ G+ T+L++ P ++++T F R I+VFSIL
Sbjct: 11 AAGWAAPGVPALAVTADGNGEQTYTVTLQILGLMTVLTLLPAAVMVMTSFTRIIVVFSIL 70
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R +G+ P + ++I LALF+TF++MSP LD++ + G++P +I+ T A+ RV EPF
Sbjct: 71 RQALGLAQTPSSQILIGLALFLTFFIMSPVLDKAYQEGVKPYFQEEISVTDALARVREPF 130
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
FM TRE DL LF +++ + + + +L+P+F+ SEL+ +F+IGFL+
Sbjct: 131 HHFMIAQTRETDLKLFAEISGRE----AFESPEQVPFSLLVPAFITSELKTAFQIGFLLF 186
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIID++VA+++MAMGMMML P +SLPFK++ FVLIDGWSLL+ L SF
Sbjct: 187 IPFLIIDLVVASVLMAMGMMMLSPMLVSLPFKLLLFVLIDGWSLLMGTLASSF 239
>gi|291558213|emb|CBL35330.1| flagellar biosynthetic protein FliP [Eubacterium siraeum V10Sc8a]
Length = 296
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 91/222 (40%), Positives = 133/222 (59%), Gaps = 9/222 (4%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
+ + + T+LS+AP LL+M+T F R II FS LRT M S PPN+V+ L+L
Sbjct: 73 GVDGSQSLEVILLVTVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQSTPPNMVLTGLSL 132
Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
F+T ++M P E QP ++T AI +P FM T D+ F+D+
Sbjct: 133 FLTIFIMWPVFSEINETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLK 192
Query: 153 HSSHRNTDITKNDHIE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
S + D+I + +IP+F++SEL+R+F++GFLI +PFL+ID++V+
Sbjct: 193 GQSMSDVTGGATDNITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVS 252
Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ +MAMGMMMLPP ISLPFK+I FVL+DGW L+V +V S+
Sbjct: 253 STLMAMGMMMLPPAMISLPFKIILFVLVDGWQLMVGTIVNSY 294
>gi|304316893|ref|YP_003852038.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778395|gb|ADL68954.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 249
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 98/242 (40%), Positives = 152/242 (62%), Gaps = 5/242 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
L + +S +N P+ + T ++ + T+L++AP +LIM+T F
Sbjct: 12 LISLILLTKVTYAASSSASPLITINAPSGPNDITSSIQIVLLLTVLTLAPSILIMMTSFT 71
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R I+V S LR +G+ +PPN V+I L+LF+TF++M+P + IQP M +IT
Sbjct: 72 RIIVVLSFLRNALGLQQMPPNQVLIGLSLFLTFFIMAPVGVQINNDSIQPYMQGKITPQV 131
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A + +P FM TR+ DL+LF+++A + + I R++IPSF+ISEL+
Sbjct: 132 AYVKARDPLKNFMLKQTRKNDLNLFINLAKIK-----VKSVNDIPLRVVIPSFIISELKT 186
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+FEIGF+I +PFLIIDM+VA+++M+MGM MLPP ISLPFK++ F+L+DGW++L ++LV
Sbjct: 187 AFEIGFIIYIPFLIIDMVVASVLMSMGMFMLPPVLISLPFKLLLFILVDGWNILAKSLVI 246
Query: 244 SF 245
F
Sbjct: 247 GF 248
>gi|251772432|gb|EES52999.1| flagellar biosynthetic protein FliP [Leptospirillum
ferrodiazotrophum]
Length = 272
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 97/222 (43%), Positives = 142/222 (63%), Gaps = 3/222 (1%)
Query: 24 HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
N + S V F + T+LS+AP +L+M+T F R ++V S LR +G VPP
Sbjct: 53 LSFGNGNPEPSQVAMTVELFLLLTVLSLAPAILVMMTSFTRIVVVLSFLRQALGTAQVPP 112
Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
N V++ L+LF+TF++M+P IQP + +I A+ R P FM R+K
Sbjct: 113 NQVMVGLSLFLTFFIMAPVWQTMNRTAIQPYLAKEIAPDVALTRGMAPVRDFMFRQVRKK 172
Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
DL++F +AH D I +LIP+F++SEL +FE+GFLI LPFLI+D++V+
Sbjct: 173 DLAMFERIAHLP---ETPASRDDIPTYVLIPAFVVSELSTAFEMGFLIYLPFLILDVVVS 229
Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+++M+MGMMMLPPT +SLPFK++ FVL+DGWSL+V +LV+SF
Sbjct: 230 SVLMSMGMMMLPPTVVSLPFKILLFVLVDGWSLIVGSLVQSF 271
>gi|261344130|ref|ZP_05971774.1| flagellar biosynthetic protein FliP [Providencia rustigianii DSM
4541]
gi|282567722|gb|EFB73257.1| flagellar biosynthetic protein FliP [Providencia rustigianii DSM
4541]
Length = 247
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 96/232 (41%), Positives = 145/232 (62%), Gaps = 4/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
P+ A ++ + V+T T+L P +L+M+T F R IIV +LR
Sbjct: 18 PQSASAALPAVISHSLTDGGQSWSLPVQTLLFLTLLGFIPAMLLMMTSFTRIIIVLGLLR 77
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+G S PPN V++ LALF+TF+VMSP D+ QP ++I+ TA+++ P
Sbjct: 78 NALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQPFSEDKISLETALEKGTAPLR 137
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM TRE DL+LF +A +I + + RIL+P+F+ SEL+ +F+IGF I +
Sbjct: 138 TFMLGQTRESDLALFARIAKVG----EIQEAKDVPMRILVPAFITSELKTAFQIGFTIFI 193
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 194 PFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSF 245
>gi|222823982|ref|YP_002575556.1| flagellar biosynthesis protein FliP [Campylobacter lari RM2100]
gi|222539204|gb|ACM64305.1| flagellar biosynthesis protein FliP [Campylobacter lari RM2100]
Length = 244
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 99/226 (43%), Positives = 154/226 (68%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ ++ P + + TIL++AP ++ ++T F R ++VFS LRT +G +
Sbjct: 22 PTVNLSLSAPNSPQQLVTTLNIVIVLTILALAPTIVFVMTSFLRLVVVFSFLRTALGTQT 81
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN ++++LAL +TF++M P +S GI+P + QI A + +PF FM NT
Sbjct: 82 MPPNTILVTLALILTFFIMEPVATKSYNEGIKPYIAEQIGYEEAFAKGVKPFKDFMLKNT 141
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFL+ LPFL+IDM
Sbjct: 142 REKDLALFYRIRNLENPKT----IDDVPLTVLVPAFMISELKTAFEIGFLLFLPFLVIDM 197
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++++MAMGMMMLPP IS+PFK++ FVL+DGW+LL++NLVKSF+
Sbjct: 198 VVSSVLMAMGMMMLPPVMISMPFKLLIFVLVDGWNLLIQNLVKSFL 243
>gi|330447937|ref|ZP_08311585.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328492128|dbj|GAA06082.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 254
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 87/246 (35%), Positives = 132/246 (53%), Gaps = 5/246 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDV-MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
++ L V A S L+ + + + ++ + T LS P L+M
Sbjct: 12 VLTLVVIIGCLFFSSQVEANSGLNFLTVTDEQGEQEYSVKLQILLLMTALSFIPAFLLMA 71
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIV SILR +G+ PPN +++ +AL +T +M P + P N I
Sbjct: 72 TSFTRIIIVLSILRQALGLQQSPPNRILVGIALSLTILIMRPVWSDVYDNAFVPYDNGDI 131
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
T A +P FM T + L M +A+ + I + I++P+F++S
Sbjct: 132 TLLQAFDTAEKPVRDFMLKQTHQSALEQMMRIANEPLD----QDVEDISFAIVLPAFVVS 187
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK+I FVL DGW++ V
Sbjct: 188 ELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLIVFVLADGWTMTVG 247
Query: 240 NLVKSF 245
+L SF
Sbjct: 248 SLSASF 253
>gi|28899013|ref|NP_798618.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus RIMD
2210633]
gi|260365241|ref|ZP_05777798.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus K5030]
gi|260878791|ref|ZP_05891146.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
AN-5034]
gi|260897386|ref|ZP_05905882.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
Peru-466]
gi|28807232|dbj|BAC60502.1| polar flagellar assembly protein FliP [Vibrio parahaemolyticus RIMD
2210633]
gi|308088270|gb|EFO37965.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
Peru-466]
gi|308094309|gb|EFO44004.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
AN-5034]
gi|308115428|gb|EFO52968.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus K5030]
Length = 289
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 93/227 (40%), Positives = 139/227 (61%), Gaps = 5/227 (2%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
A + P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 66 AGIPAFTMTTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGL 125
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
P N VII +ALF+TF+VMSP L+ + IQP +N Q+T A P FM
Sbjct: 126 QQTPSNQVIIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLK 185
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
TR KDL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLII
Sbjct: 186 QTRIKDLETFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLII 240
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
D++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 241 DLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287
>gi|260901180|ref|ZP_05909575.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
AQ4037]
gi|308109389|gb|EFO46929.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
AQ4037]
Length = 252
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 81/235 (34%), Positives = 128/235 (54%), Gaps = 4/235 (1%)
Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
P + + + ++ + T LS P ++M T F R I+V +
Sbjct: 21 FAFPTMAADNGLTILSVTDGDAQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLA 80
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
ILR +G+ PPN V++ +AL +T +M P E QP N +IT A +
Sbjct: 81 ILRQALGLQQSPPNRVLVGIALTLTLLIMRPVWTDIYENAFQPYDNGEITLVQAFSVAEK 140
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM T + L + +A+ K + I + +++P+F+ISEL+ +F+IGF+
Sbjct: 141 PVRNFMLAQTHQSSLEQMLRIANEPLD----QKLEDISFAVVLPAFVISELKTAFQIGFM 196
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ +PFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGW++ V L SF
Sbjct: 197 LFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVGTLSASF 251
>gi|253573534|ref|ZP_04850877.1| flagellar biosynthetic protein FliP [Paenibacillus sp. oral taxon
786 str. D14]
gi|251847062|gb|EES75067.1| flagellar biosynthetic protein FliP [Paenibacillus sp. oral taxon
786 str. D14]
Length = 255
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 98/246 (39%), Positives = 155/246 (63%), Gaps = 5/246 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS-TWIVRTFGIFTILSIAPILLIMV 59
+ + A+ + + E V S+ + S T + + T+LSIAP +L+++
Sbjct: 12 LTIWSILAVSVASAEPVDPIPSIGIQIGNSDSGGASGTTSLSILLMITVLSIAPAILVLM 71
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R ++V +R+ +G +PPN V+I LALF+T ++MSPTL E+ +QP + +I
Sbjct: 72 TSFTRIVVVLGFVRSSLGTQQMPPNQVLIGLALFLTLFIMSPTLSTINEVAVQPYIKGEI 131
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
T+T A+ + A P FM ++TR KDL LFM + I +++P+F IS
Sbjct: 132 TQTEALDKAAVPMKKFMYSHTRTKDLQLFMGYTKMEKPK----SYEDIPLSVMVPAFAIS 187
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +F++GF+I +PFLIID++V++++MAMGMMMLPP ISLPFK++ FVL+DGW L+V+
Sbjct: 188 ELKTAFQMGFMIFIPFLIIDIVVSSVLMAMGMMMLPPVMISLPFKILLFVLVDGWYLIVK 247
Query: 240 NLVKSF 245
+L+ SF
Sbjct: 248 SLLVSF 253
>gi|224826623|ref|ZP_03699724.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002]
gi|224601224|gb|EEG07406.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002]
Length = 248
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 99/249 (39%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 1 MIRYCFFALFLVTPELV----FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
M R+ F+ L+ A L + + ++ T LS P LL
Sbjct: 1 MKRFLVFSGLLLAGLFPLLADAAGLPLMNSTPAAGGGQSYSLSLQMLLFMTALSFIPALL 60
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
+M+T F R IIV S+LR MG PPN V++ LALF+T +VM PT D+ P
Sbjct: 61 LMMTSFTRIIIVLSLLRQAMGTMQAPPNQVLVGLALFLTLFVMGPTFDQVYSKAWVPFSE 120
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
++I ++ ++P FM TREKDL+ F++++ S T + + LIP+F
Sbjct: 121 DKIGFAQMLEEGSKPMREFMLKQTREKDLAFFIEVSQSPAPPTPA----EVSMKTLIPAF 176
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
+ISEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMM+ P ISLPFK++ FVL+DGW+L
Sbjct: 177 VISELKTAFQIGFMVFIPFLIIDLVVASILMAMGMMMVSPVIISLPFKLMLFVLVDGWTL 236
Query: 237 LVENLVKSF 245
L+ +LV+SF
Sbjct: 237 LMGSLVRSF 245
>gi|163801855|ref|ZP_02195752.1| flagellar biosynthesis protein P [Vibrio sp. AND4]
gi|159174363|gb|EDP59167.1| flagellar biosynthesis protein P [Vibrio sp. AND4]
Length = 289
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 92/224 (41%), Positives = 137/224 (61%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 69 PAFTMTTNADGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 128
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF+VMSP L+ + IQP +N Q+T A P FM TR
Sbjct: 129 PSNQVIIGIALFLTFFVMSPVLNEINDNAIQPYLNEQLTARQAFDTAQVPMKAFMLKQTR 188
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F+DM+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 189 IKDLETFVDMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 243
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 244 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287
>gi|225159018|ref|ZP_03725328.1| Triacylglycerol lipase [Opitutaceae bacterium TAV2]
gi|224802397|gb|EEG20659.1| Triacylglycerol lipase [Opitutaceae bacterium TAV2]
Length = 297
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 82/223 (36%), Positives = 145/223 (65%), Gaps = 5/223 (2%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
L + + ++ + T+L++AP L++++T F R +IV ++RT +G+ + P
Sbjct: 78 LAIDLEGGGKPGEISVGLQIVVVMTLLTVAPSLILLMTSFTRLVIVLGLVRTALGVPNAP 137
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
N ++I L+LF+T ++M P + R+ + +QP M ++ A+ + AEP FM TR
Sbjct: 138 ANQIVIGLSLFLTIFIMGPVIQRANQEALQPYMAGEMRSADALAKAAEPVKEFMLKQTRT 197
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
+DL F+ + T+ + R++IP+F+ISEL+ +F++GFL+ LPFL+ID++V
Sbjct: 198 RDLEFFLQLGRFPP-----TRVQDLPLRVVIPAFVISELQTAFQMGFLLFLPFLVIDLLV 252
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++ +M++GMMM+PP +SLPFK++ FVL+DGW L+V++LV+SF
Sbjct: 253 SSTLMSLGMMMMPPAIVSLPFKLLLFVLVDGWHLVVKSLVESF 295
>gi|254228804|ref|ZP_04922227.1| flagellar biosynthetic protein FliP [Vibrio sp. Ex25]
gi|262396477|ref|YP_003288330.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25]
gi|151938751|gb|EDN57586.1| flagellar biosynthetic protein FliP [Vibrio sp. Ex25]
gi|262340071|gb|ACY53865.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25]
Length = 252
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 80/235 (34%), Positives = 129/235 (54%), Gaps = 4/235 (1%)
Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
P + ++ + ++ + T LS P ++M T F R I+V +
Sbjct: 21 FAFPTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLA 80
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
ILR +G+ PPN V++ +AL +T +M P E QP N +IT A +
Sbjct: 81 ILRQALGLQQSPPNRVLVGIALALTLLIMRPVWSDIHENAFQPYDNGEITLIQAFSVAEK 140
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM T + L + +A+ K + I + +++P+F+ISEL+ +F+IGF+
Sbjct: 141 PVREFMLAQTHQSSLEQMLRIANEPLD----QKVEDISFAVVLPAFVISELKTAFQIGFM 196
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ +PFL+ID++VA+++MAMGMMML P +SLPFK++ FVL+DGW++ V L SF
Sbjct: 197 LFIPFLVIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVGTLSASF 251
>gi|261209859|ref|ZP_05924160.1| flagellar biosynthesis protein FliP [Vibrio sp. RC341]
gi|260841045|gb|EEX67570.1| flagellar biosynthesis protein FliP [Vibrio sp. RC341]
Length = 299
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 139/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 79 PAFTMTTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 138
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF++M+P ++ E +QP +N QI+ A EP FM TR
Sbjct: 139 PSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTR 198
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 199 VKDLETFVEMSG-----AQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 253
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 254 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297
>gi|20807873|ref|NP_623044.1| flagellar biosynthesis protein FliP [Thermoanaerobacter
tengcongensis MB4]
gi|20516437|gb|AAM24648.1| Flagellar biosynthesis/type III secretory pathway protein
[Thermoanaerobacter tengcongensis MB4]
Length = 221
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 95/223 (42%), Positives = 151/223 (67%), Gaps = 5/223 (2%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
L ++++ S + ++ + T+L++AP +LIM+T F R +IV + LR +G+ +P
Sbjct: 3 LSNLVSSVTSPSNLSTSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLAFLRNALGLQQMP 62
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN V+I LALF+TFY+M+P I+P + QI + A QR +P FM TR+
Sbjct: 63 PNQVLIGLALFLTFYIMAPVGYDINNNAIKPYVEGQINQYEAYQRAIKPLKNFMLRQTRQ 122
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
DL+LF+++A + K + + R++IP+F+ISEL+ +FEIGF+I +PFL+ID+IV
Sbjct: 123 NDLALFVNLAKIK-----VDKVEDLPMRVVIPAFIISELKTAFEIGFIIYIPFLVIDIIV 177
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+++M+MGM MLPP ISLPFKV+ F+L+DGW+L+V++L+ F
Sbjct: 178 ASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220
>gi|207092164|ref|ZP_03239951.1| flagellar biosynthesis protein FliP [Helicobacter pylori
HPKX_438_AG0C1]
Length = 266
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 106/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P D + + T+L +AP L++++T
Sbjct: 24 FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 83
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 84 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 143
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 144 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 199
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 200 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 259
Query: 242 VKSF 245
V SF
Sbjct: 260 VASF 263
>gi|56419769|ref|YP_147087.1| flagellar biosynthesis protein FliP [Geobacillus kaustophilus
HTA426]
gi|56379611|dbj|BAD75519.1| flagellar biosynthetic protein [Geobacillus kaustophilus HTA426]
Length = 222
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 97/214 (45%), Positives = 146/214 (68%), Gaps = 4/214 (1%)
Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
+ V+ + T+LSIAP +LIM+TCF R +IV S +RT +G +PPN V++ LA
Sbjct: 12 APEHVSTAVKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTALGTQQMPPNQVLVGLA 71
Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
LF+TF++M+PT + +QPL ++I A +R A P FM TR++DL+LF+
Sbjct: 72 LFLTFFIMAPTWKEINDQALQPLFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSY 131
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ + T + I L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGM
Sbjct: 132 SGAKQPKT----INDIPMTALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGM 187
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 188 MMLPPVMISLPFKILLFVLVDGWHLVVKSLLQSF 221
>gi|146341897|ref|YP_001206945.1| flagellar biosynthesis protein FliP [Bradyrhizobium sp. ORS278]
gi|146194703|emb|CAL78728.1| Flagellar transport protein FliP [Bradyrhizobium sp. ORS278]
Length = 226
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 113/228 (49%), Positives = 161/228 (70%), Gaps = 4/228 (1%)
Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
A + + ++ V+ + T+LSIAP +L+M+T F R ++V S+LRT MG
Sbjct: 1 MAAQDISINLGGAGGGGVTERAVQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTAMG 60
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
+ PPN VII+LA+F+T +VM P L +S + G++PL+ NQIT A+QR + P FM+
Sbjct: 61 TATAPPNSVIIALAMFLTAFVMGPVLQKSYDDGVRPLIENQITVEDALQRASVPLRGFMQ 120
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
N REKDL LFMD++ + T D + RIL+P+FMISEL+R+FEIGFL+ LPFLI
Sbjct: 121 KNVREKDLKLFMDLSGEAPPAT----PDELSLRILVPAFMISELKRAFEIGFLLFLPFLI 176
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
ID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ +LV+S+
Sbjct: 177 IDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 224
>gi|254478865|ref|ZP_05092229.1| flagellar biosynthetic protein FliP [Carboxydibrachium pacificum
DSM 12653]
gi|214035178|gb|EEB75888.1| flagellar biosynthetic protein FliP [Carboxydibrachium pacificum
DSM 12653]
Length = 221
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 94/223 (42%), Positives = 150/223 (67%), Gaps = 5/223 (2%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
L ++++ S + ++ + T+L++AP +LIM+T F R +IV + LR +G+ +P
Sbjct: 3 LSNLVSSVTSPSNLSTSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLAFLRNALGLQQMP 62
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN V+I LALF+TFY+M+P I+P + QI + A +R +P FM TR+
Sbjct: 63 PNQVLIGLALFLTFYIMAPVGYDINNNAIKPYVEGQINQYEAYERAIKPLKSFMLRQTRQ 122
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
DL+LF+++A K + + R++IP+F+ISEL+ +FEIGF+I +PFL+ID+IV
Sbjct: 123 NDLALFVNLAKIK-----ADKVEDLPMRVVIPAFIISELKTAFEIGFIIYIPFLVIDIIV 177
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+++M+MGM MLPP ISLPFKV+ F+L+DGW+L+V++L+ F
Sbjct: 178 ASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220
>gi|54308125|ref|YP_129145.1| flagellar biosynthesis protein FliP [Photobacterium profundum SS9]
gi|46912551|emb|CAG19343.1| Putative polar flagellar assembly protein, FliP [Photobacterium
profundum SS9]
Length = 284
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 93/224 (41%), Positives = 139/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
V P + ++ G+ T L P ++I++T F R ++V SILR MG+
Sbjct: 64 PAFSVTTNPDGSEDYSVTLQILGLMTALGFLPAIIILMTSFTRIVVVLSILRQAMGLQQT 123
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+T +VMSP +D+ +QP +N +IT A + P FM TR
Sbjct: 124 PSNQVIIGIALFLTLFVMSPVIDKVNADAVQPYINEEITAAQAFETAQVPLRQFMLKQTR 183
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ S+ T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 184 VKDLESFVNMSGST-----ATAPEDVPITVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 238
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 239 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 282
>gi|188586035|ref|YP_001917580.1| flagellar biosynthetic protein FliP [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350722|gb|ACB84992.1| flagellar biosynthetic protein FliP [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 255
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 89/193 (46%), Positives = 127/193 (65%), Gaps = 4/193 (2%)
Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
P LLI+ T F R +IV S +R + +PPN V+I LALF+TF++MSP + +
Sbjct: 66 PALLILTTSFTRVVIVLSFIRNALATQQMPPNQVLIGLALFLTFFIMSPVWGDVYQEAWE 125
Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
P IT+ AI+ EP FM TRE DL+LF++ + + T + + ++
Sbjct: 126 PYREGDITQEEAIENGLEPVREFMYQQTREDDLALFVEYSDIENPAT----IEDVPTHVI 181
Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
IP+F+ISEL+ +F+IGF+I +PFLIIDMIVA+ +M+MGM+MLPP ISLPFKV+ FVL+D
Sbjct: 182 IPAFVISELKTAFQIGFMIFVPFLIIDMIVASTLMSMGMLMLPPVMISLPFKVLLFVLVD 241
Query: 233 GWSLLVENLVKSF 245
GW L+ +L+ SF
Sbjct: 242 GWFLITRSLLISF 254
>gi|261419434|ref|YP_003253116.1| flagellar biosynthesis protein FliP [Geobacillus sp. Y412MC61]
gi|297530591|ref|YP_003671866.1| flagellar biosynthetic protein FliP [Geobacillus sp. C56-T3]
gi|319766249|ref|YP_004131750.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC52]
gi|261375891|gb|ACX78634.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC61]
gi|297253843|gb|ADI27289.1| flagellar biosynthetic protein FliP [Geobacillus sp. C56-T3]
gi|317111115|gb|ADU93607.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC52]
Length = 222
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 97/214 (45%), Positives = 146/214 (68%), Gaps = 4/214 (1%)
Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
+ V+ + T+LSIAP +LIM+TCF R +IV S +RT +G +PPN V++ LA
Sbjct: 12 APEHVSTAVKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTALGTQQMPPNQVLVGLA 71
Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
LF+TF++M+PT + +QPL ++I A +R A P FM TR++DL+LF+
Sbjct: 72 LFLTFFIMAPTWKDINDQALQPLFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSY 131
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ + T + I L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGM
Sbjct: 132 SGAKQPKT----INDIPMTALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGM 187
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 188 MMLPPVMISLPFKILLFVLVDGWHLVVKSLLQSF 221
>gi|260598457|ref|YP_003211028.1| flagellar biosynthetic protein fliP [Cronobacter turicensis z3032]
gi|260217634|emb|CBA31933.1| Flagellar biosynthetic protein fliP [Cronobacter turicensis z3032]
Length = 223
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 96/224 (42%), Positives = 144/224 (64%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + V+T T L+ P +L+M+T F R IIVF +LR +G S
Sbjct: 2 PGLVSQPMSGGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSA 61
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN V++ LALF+TF++MSP +D+ QP N+I+ A+ R A+P FM TR
Sbjct: 62 PPNQVLLGLALFLTFFIMSPVIDKIYSDAYQPFTENKISMEVALDRGAQPLREFMLRQTR 121
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
E DL+LF +A++ I + + RIL+P+++ SEL+ +F+IGF + +PFLIID++
Sbjct: 122 EADLALFAKLANT----QPIQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLV 177
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MA+GMMM+PP SI+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 178 VASVLMALGMMMVPPASIALPFKLMLFVLVDGWQLLVGSLAQSF 221
>gi|299531251|ref|ZP_07044661.1| flagellar biosynthesis protein FliP [Comamonas testosteroni S44]
gi|298720658|gb|EFI61605.1| flagellar biosynthesis protein FliP [Comamonas testosteroni S44]
Length = 249
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 93/247 (37%), Positives = 149/247 (60%), Gaps = 7/247 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSS---LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
+ A+ L P + A+ + L ++ A + + ++T FT LS P +L++
Sbjct: 5 VSRAAAAVLLAMPLMAAAQGAPASLPLLVGQGAGGTSYSVPIQTLLFFTALSFLPAILLL 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R +IV S+LR +G S PPN V+I L+LF+T +VM PTLD+ + P N
Sbjct: 65 MTGFTRIVIVLSLLRQALGTQSAPPNQVVIGLSLFLTMFVMGPTLDKVYQDAYLPYTQNS 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
I+ A+++ P FM TR+ D +LF +A T + R+L+P+F+
Sbjct: 125 ISFEQAMEKAEAPMRGFMLKQTRQSDFALFKRLAKLDANVT----AETAPLRVLVPAFVT 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P ++LPFK++ FVL DGW+L++
Sbjct: 181 SELKTAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLII 240
Query: 239 ENLVKSF 245
+L SF
Sbjct: 241 GSLAASF 247
>gi|163849877|ref|YP_001637920.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens
PA1]
gi|163661482|gb|ABY28849.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens
PA1]
Length = 253
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 102/215 (47%), Positives = 152/215 (70%), Gaps = 4/215 (1%)
Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
+ ++ + T+L++AP +L+M T F R ++V SILR+ +G + PPN V++SL
Sbjct: 41 GAGGTTERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSL 100
Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
ALF+T +VM+PT + G++PLM QI+++ A +R + PF FM N REKDL LF+D
Sbjct: 101 ALFLTAFVMAPTAREAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLD 160
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
MA + I I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMG
Sbjct: 161 MARQPAP----AGPEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMG 216
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MMMLPP +++LPFK+IFFVL+DGW+L+ +L++S+
Sbjct: 217 MMMLPPATVALPFKLIFFVLVDGWTLVAGSLIQSY 251
>gi|149908447|ref|ZP_01897110.1| flagellar biosynthesis protein [Moritella sp. PE36]
gi|149808610|gb|EDM68545.1| flagellar biosynthesis protein [Moritella sp. PE36]
Length = 248
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 90/220 (40%), Positives = 136/220 (61%), Gaps = 5/220 (2%)
Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
V+ + ++ + T LS P LIM+T F R IIV SILR +G+ P N
Sbjct: 32 VITNNDGSQEYSVSLQILAMMTALSFLPAALIMMTSFTRIIIVLSILRQALGLQQSPSNQ 91
Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
V++ + LF++F++MSP DR + +QP ++ ++T A ++ P FM TR DL
Sbjct: 92 VLVGITLFLSFFIMSPVFDRINDNALQPYLSEELTSMQAFEQAKLPMQQFMLAQTRVTDL 151
Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
FM +A + + +R+LIP+F+ SEL+ +F+IGF++ +PFLIID++VA+I
Sbjct: 152 DTFMRIAKVE-----ADSPEEVPFRVLIPAFVTSELKTAFQIGFMVFIPFLIIDLVVASI 206
Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+MAMGMMML P +SLPFK++ FVL+DGWSL++ L SF
Sbjct: 207 LMAMGMMMLSPMIVSLPFKLMLFVLVDGWSLILGTLANSF 246
>gi|153834137|ref|ZP_01986804.1| flagellar biosynthesis protein [Vibrio harveyi HY01]
gi|148869507|gb|EDL68505.1| flagellar biosynthesis protein [Vibrio harveyi HY01]
Length = 280
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 91/224 (40%), Positives = 137/224 (61%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 60 PAFTMTTNADGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 119
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF+VMSP L+ + IQP +N Q+T A P FM TR
Sbjct: 120 PSNQVIIGIALFLTFFVMSPVLNEINDNAIQPYLNEQVTARQAFDAAQVPMKAFMLKQTR 179
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 180 IKDLETFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 234
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 235 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 278
>gi|330826721|ref|YP_004390024.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans
K601]
gi|329312093|gb|AEB86508.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans
K601]
Length = 251
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 86/222 (38%), Positives = 137/222 (61%), Gaps = 4/222 (1%)
Query: 24 HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
V+ A + + ++T FT LS P +L+M+T F R +IV S+LR +G PP
Sbjct: 32 PLVVGSGAGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQQAPP 91
Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
N V++ L+LF+T +VM PTLD+ + P N ++ A+ + P FM TR+
Sbjct: 92 NQVVVGLSLFLTLFVMGPTLDKVYQEAYVPYTTNALSFEQALAKAEAPMRGFMLKQTRQS 151
Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
D +LF +A + + R+L+P+F+ SEL+ +F+IGF++ +PFLIIDM+V+
Sbjct: 152 DFALFARLAKL----DEGVTAETAPLRVLVPAFVTSELKTAFQIGFMVFIPFLIIDMVVS 207
Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+++M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF
Sbjct: 208 SVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 249
>gi|209695730|ref|YP_002263660.1| flagellar biosynthesis protein FliP [Aliivibrio salmonicida
LFI1238]
gi|208009683|emb|CAQ79982.1| polar flagellar assembly protein FliP [Aliivibrio salmonicida
LFI1238]
Length = 289
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 86/224 (38%), Positives = 137/224 (61%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + + ++ G+ T+L P ++I++T F R ++V SILR MG+
Sbjct: 69 PAFTMTTNASGGEDYSVNLQILGLMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 128
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +A+F+TF++M+P D+ E IQP + +IT A P FM TR
Sbjct: 129 PSNQVIIGIAMFLTFFIMAPVFDKVNETAIQPYIGEEITAREAFDAAQIPMKEFMLAQTR 188
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ + + + ++IP+F+ SEL+ +F++GF++ LPFLIID++
Sbjct: 189 VKDLETFVNMSGVE-----VENPEDVPITVVIPAFITSELKTAFQMGFMLFLPFLIIDLV 243
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 244 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287
>gi|33592492|ref|NP_880136.1| flagellar biosynthesis protein FliP [Bordetella pertussis Tohama I]
gi|33572138|emb|CAE41681.1| flagellar biosynthetic protein FliP [Bordetella pertussis Tohama I]
gi|332381910|gb|AEE66757.1| flagellar biosynthesis protein FliP [Bordetella pertussis CS]
Length = 244
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 100/236 (42%), Positives = 146/236 (61%), Gaps = 6/236 (2%)
Query: 12 VTPELVFAKSSLHDVMNIPA--DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
+ P A+++L + P + ++T + T LS P L+M+T F R IIV
Sbjct: 11 LWPSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVL 70
Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
+LR+ MG PPN V+I LALF+TFY MSP D+ QPL I TA++R
Sbjct: 71 GLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAG 130
Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
P FM + TRE DL+LF ++A+ + + RILIP+F+ SEL+ +F+IGF
Sbjct: 131 APLHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGF 186
Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF
Sbjct: 187 TIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 242
>gi|149188095|ref|ZP_01866390.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
gi|148838083|gb|EDL55025.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
Length = 287
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 93/218 (42%), Positives = 140/218 (64%), Gaps = 5/218 (2%)
Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
P + ++ + T+L P ++I++T F R ++V SILR MG+ P N VI
Sbjct: 73 TNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVI 132
Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
I +A+F+TF++MSP L++ + IQP +N QIT A Q+ P FM TR KDL
Sbjct: 133 IGIAIFLTFFIMSPVLNQVNDQAIQPYLNEQITAKEAFQQAQGPMKSFMLKQTRVKDLET 192
Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
F++M+ S+ + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+I+M
Sbjct: 193 FVEMSGST-----AQNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASILM 247
Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
AMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 248 AMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 285
>gi|332702322|ref|ZP_08422410.1| flagellar biosynthetic protein FliP [Desulfovibrio africanus str.
Walvis Bay]
gi|332552471|gb|EGJ49515.1| flagellar biosynthetic protein FliP [Desulfovibrio africanus str.
Walvis Bay]
Length = 263
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 99/235 (42%), Positives = 144/235 (61%), Gaps = 7/235 (2%)
Query: 14 PELVFAKSSLHDVMNIPAD---LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
P L +A+ H M+I + ++ + T+LS+AP +++ +T F R IIVF
Sbjct: 31 PGLAWAQDIPHFSMSISGGQPEPEQVSLLLEIIFLLTVLSLAPAIIMTMTSFTRIIIVFH 90
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
LR +G +PP+ ++ISLA+FMTF +M PT +QP M +I A+ +
Sbjct: 91 FLRQALGTQQMPPSQILISLAIFMTFVIMMPTAMAINNTALQPYMEERIGFKEALDNAQK 150
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM +TREKDLS+F +A + + + +L +F+ISEL+ F IGFL
Sbjct: 151 PLREFMFKHTREKDLSVFYSIAKIERPD----NREQVPTMLLTAAFVISELKTGFIIGFL 206
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I +PFLI+DM+VA+I++AMGMMMLPP ISLPFKV+ FV++DGW+LL +LV SF
Sbjct: 207 IYIPFLILDMVVASILLAMGMMMLPPVMISLPFKVLLFVMVDGWNLLTASLVNSF 261
>gi|210134891|ref|YP_002301330.1| flagellar biosynthesis protein FliP [Helicobacter pylori P12]
gi|210132859|gb|ACJ07850.1| flagellar biosynthetic protein [Helicobacter pylori P12]
Length = 260
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 106/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P D + + T+L +AP L++++T
Sbjct: 18 FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 77
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 78 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 137
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 138 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 193
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 194 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 253
Query: 242 VKSF 245
V SF
Sbjct: 254 VASF 257
>gi|163758021|ref|ZP_02165109.1| putative flagellar biosynthetic protein FliP [Hoeflea phototrophica
DFL-43]
gi|162284310|gb|EDQ34593.1| putative flagellar biosynthetic protein FliP [Hoeflea phototrophica
DFL-43]
Length = 245
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 140/247 (56%), Positives = 188/247 (76%), Gaps = 3/247 (1%)
Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
MIR +V A++ ++ P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1 MIRLLSAVVAMMVIATAANAQALDPGLLQAPLDGSVASWIIRTFGLLTVLSVAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T FPRFII F+ILR GMG+ + P N++++SLALFMTFYVM+PT DR+ E G+ PL+ +QI
Sbjct: 61 TSFPRFIIAFAILRAGMGLATTPANMILVSLALFMTFYVMAPTFDRAWENGVTPLLEDQI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
TE AIQ +A+PF FM NTR KDL+LF+D+A R + I+ R+L+P+FMIS
Sbjct: 121 TEEEAIQLIADPFRDFMLVNTRPKDLALFVDLATE--RGQSTETDGKIDMRVLVPAFMIS 178
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
E+RR FEIGFL++LPFL+ID++VATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLVVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238
Query: 240 NLVKSFI 246
+LV+SF+
Sbjct: 239 SLVRSFV 245
>gi|90411033|ref|ZP_01219047.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
gi|90328246|gb|EAS44557.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
Length = 284
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 95/224 (42%), Positives = 140/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
V P + ++ G+ T L P ++I++T F R ++V SILR MG+
Sbjct: 64 PAFSVTTNPDGGEDYSVTLQILGLMTALGFLPAIVILMTSFTRIVVVLSILRQAMGLQQT 123
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALFMTF+VMSP +D+ +QP +N +IT A + P FM TR
Sbjct: 124 PSNQVIIGIALFMTFFVMSPVIDKVNIDAVQPYINEEITAAQAFETAQVPLRQFMLKQTR 183
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ S+ T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 184 VKDLESFVNMSGST-----ATAPEDVPITVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 238
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 239 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILTTLAGSF 282
>gi|332799191|ref|YP_004460690.1| flagellar biosynthetic protein FliP [Tepidanaerobacter sp. Re1]
gi|332696926|gb|AEE91383.1| flagellar biosynthetic protein FliP [Tepidanaerobacter sp. Re1]
Length = 258
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 96/237 (40%), Positives = 146/237 (61%), Gaps = 3/237 (1%)
Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
+ P+ + + + ++ + TILS+AP +L ++T F R IIV
Sbjct: 24 IVYAAPQDIPIPVPSFPFIKQAETTGETAMALQIVLLLTILSLAPSILTLLTSFTRTIIV 83
Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
S +R G+G+ VPP V+I LALF+T +VM+P IQP MN +I + A++R
Sbjct: 84 LSFVRNGLGVQQVPPTQVLIGLALFITVFVMAPVWTEINSEAIQPYMNQEIDTSEALRRS 143
Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
P FM TREKDL+LF+ A T + D I +LIPSF+ISEL+ +F++G
Sbjct: 144 QIPLRNFMFRQTREKDLALFVHYAKL---ETPLNTLDDIPTYVLIPSFIISELKTAFQMG 200
Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
F+I +PFL+IDMIV++ +M+MGM+MLPP ISLPFK++ FV++DGW+L++ +++ F
Sbjct: 201 FIIFIPFLVIDMIVSSTLMSMGMLMLPPIMISLPFKILLFVMVDGWNLVINSILAGF 257
>gi|148546750|ref|YP_001266852.1| flagellar biosynthesis protein FliP [Pseudomonas putida F1]
gi|148510808|gb|ABQ77668.1| flagellar biosynthetic protein FliP [Pseudomonas putida F1]
Length = 251
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 95/224 (42%), Positives = 139/224 (62%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ N P + ++ I T LS P +I++T F R IIVFSILR +G+
Sbjct: 29 PAITLSNTPDGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQT 88
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N ++ +ALF+T ++M+P +R + +QP + Q+T AI + P FM TR
Sbjct: 89 PSNQLLNGMALFLTMFIMAPVFERVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTR 148
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+ DL LFM ++ TDI D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+
Sbjct: 149 QSDLDLFMRLSKR----TDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMV 204
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 205 VASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLASSF 248
>gi|319898643|ref|YP_004158736.1| flagellar biosynthetic protein fliP [Bartonella clarridgeiae 73]
gi|319402607|emb|CBI76152.1| Flagellar biosynthetic protein fliP [Bartonella clarridgeiae 73]
Length = 250
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 134/247 (54%), Positives = 184/247 (74%), Gaps = 9/247 (3%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNI------PADLSISTWIVRTFGIFTILSIAPILLIM 58
+ L+T FA+ + +N +SIS IV+ FG+ T+LS+AP LLIM
Sbjct: 7 LVLMILLLTTTGAFAQRVGTENVNSLAGLFFSPGVSISGRIVQLFGLLTVLSVAPGLLIM 66
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
VT F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+QPL+NN+
Sbjct: 67 VTSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEQGVQPLVNNK 126
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
I+E AI+++++PF FM + REKDL LF+D++ SS + +++R+LIP+FMI
Sbjct: 127 ISEQQAIEKISQPFREFMISQVREKDLDLFVDLSDSSL---QVKTGADVDFRVLIPAFMI 183
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV
Sbjct: 184 SELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNLLV 243
Query: 239 ENLVKSF 245
+L++SF
Sbjct: 244 GSLIRSF 250
>gi|311068157|ref|YP_003973080.1| flagellar biosynthesis protein FliP [Bacillus atrophaeus 1942]
gi|310868674|gb|ADP32149.1| flagellar biosynthesis protein FliP [Bacillus atrophaeus 1942]
Length = 221
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 98/217 (45%), Positives = 147/217 (67%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+D + V+ + T+ S+AP +LI++TCF R +IV S +RT + S+PPN V+I
Sbjct: 9 NSSDPDNVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLI 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF++M+PT + + PLM+N+I+ A + EP FM +TR+KDL+LF
Sbjct: 69 GLALFLTFFIMAPTFSDINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
M+ A I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+
Sbjct: 129 MNYAKMDKP----ESLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
>gi|322833206|ref|YP_004213233.1| flagellar biosynthetic protein FliP [Rahnella sp. Y9602]
gi|321168407|gb|ADW74106.1| flagellar biosynthetic protein FliP [Rahnella sp. Y9602]
Length = 260
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 89/226 (39%), Positives = 141/226 (62%), Gaps = 4/226 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
+ + + ++T T L++ P +L+M T F R IIV +LR +G
Sbjct: 37 QLPGIISQQMSNGTQNWSLPIQTLVFITTLTLLPAMLLMCTSFTRIIIVLGLLRNALGTP 96
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
S PPN V++ L LF+TF+VM+P D+ QP N+IT A+ + A+P FM
Sbjct: 97 SAPPNQVLLGLGLFLTFFVMAPVFDKIYSDAYQPFSENKITMQEAMDKGAQPLRQFMLRQ 156
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PF+IID
Sbjct: 157 TRESDLALYARLANIP----PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFMIID 212
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 213 LVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 258
>gi|109899342|ref|YP_662597.1| flagellar biosynthesis protein FliP [Pseudoalteromonas atlantica
T6c]
gi|109701623|gb|ABG41543.1| flagellar biosynthetic protein FliP [Pseudoalteromonas atlantica
T6c]
Length = 251
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 88/236 (37%), Positives = 140/236 (59%), Gaps = 5/236 (2%)
Query: 12 VTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
+ P V A+ + + T ++ I T LS+ P ++M+T F R IIV
Sbjct: 15 MVPSWVLAEPGIPALTMTENADGSQDYTMTLQVVAIMTALSLLPAFIMMMTSFTRIIIVL 74
Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
SILR +G+ P N ++I ++LF++ ++M+P ++ E +QP ++ QIT A +
Sbjct: 75 SILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEKINETALQPYLSEQITSIQAYELAK 134
Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
EP FM TR KDL F+++ + + +LIP+F+ SEL+ +F+IGF
Sbjct: 135 EPLRGFMLAQTRIKDLETFVEIGG---YEDQFQEPADVPMNVLIPAFVTSELKTAFQIGF 191
Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++ +PFLI+D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L+ L SF
Sbjct: 192 MLFIPFLILDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIFGTLANSF 247
>gi|323703181|ref|ZP_08114834.1| flagellar biosynthetic protein FliP [Desulfotomaculum nigrificans
DSM 574]
gi|323531840|gb|EGB21726.1| flagellar biosynthetic protein FliP [Desulfotomaculum nigrificans
DSM 574]
Length = 270
Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats.
Identities = 90/242 (37%), Positives = 145/242 (59%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ V+ + +++ + + V+ ++L++ P LIM+T F
Sbjct: 32 FILMLPSGVSAAPLIPIPNINLNVETASQPQQVVDSVKLLIFLSLLAMVPAFLIMLTSFT 91
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R ++V S LR+ +G PPN V++ LALF+T ++MSP + IQP + NQ+T
Sbjct: 92 RIVVVLSFLRSALGTQQTPPNQVLVGLALFLTIFIMSPVYKDMNKNAIQPYLANQLTYEQ 151
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A + +P FM TREKDL LF+ +A + + +L+P+F+ISEL+
Sbjct: 152 AADKAIQPLKAFMARQTREKDLGLFISVAKMDKPK----NINEVPMSVLVPAFVISELKT 207
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF+I +PFL+IDM+VA+ +M+MGM MLPP +SLPFK++ FV++DGW L+V++LV+
Sbjct: 208 AFQIGFIIFVPFLVIDMVVASTLMSMGMFMLPPVMVSLPFKLLLFVMVDGWYLVVKSLVE 267
Query: 244 SF 245
SF
Sbjct: 268 SF 269
>gi|208434601|ref|YP_002266267.1| flagellar biosynthetic protein [Helicobacter pylori G27]
gi|208432530|gb|ACI27401.1| flagellar biosynthetic protein [Helicobacter pylori G27]
Length = 260
Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats.
Identities = 106/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P D + + T+L +AP L++++T
Sbjct: 18 FFILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 77
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 78 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 137
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 138 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 193
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 194 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 253
Query: 242 VKSF 245
V SF
Sbjct: 254 VASF 257
>gi|90577375|ref|ZP_01233186.1| putative flagellar assembly protein [Vibrio angustum S14]
gi|90440461|gb|EAS65641.1| putative flagellar assembly protein [Vibrio angustum S14]
Length = 243
Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats.
Identities = 89/246 (36%), Positives = 133/246 (54%), Gaps = 5/246 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADL-SISTWIVRTFGIFTILSIAPILLIMV 59
M+ AL ++ A S L+ + + ++ + T LS P L+M
Sbjct: 1 MLTLLLIALGVLFSSAAEANSGLNFLTVTDDQGEQEYSVKLQILLLMTALSFIPAFLLMA 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIV SILR +G+ PPN +++ +AL +T +M P + P N I
Sbjct: 61 TSFTRIIIVLSILRQALGLQQSPPNRILVGIALSLTILIMRPVWTDVYDNAFVPYDNGDI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
T A +P FM T + L M +A+ + I + I++P+F+IS
Sbjct: 121 TLLQAFDTAEKPVRDFMLKQTHQSALEQMMRIANEPLD----QDVEDISFAIVLPAFVIS 176
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK+I FVL DGW++ V
Sbjct: 177 ELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLIVFVLADGWTMTVG 236
Query: 240 NLVKSF 245
+L SF
Sbjct: 237 SLSASF 242
>gi|264676604|ref|YP_003276510.1| flagellar biosynthetic protein FliP [Comamonas testosteroni CNB-2]
gi|262207116|gb|ACY31214.1| flagellar biosynthetic protein FliP [Comamonas testosteroni CNB-2]
Length = 249
Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats.
Identities = 94/247 (38%), Positives = 150/247 (60%), Gaps = 7/247 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSS---LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
+ A+ L P + A+S+ L ++ A + + ++T FT LS P +L++
Sbjct: 5 VSRAAAAVLLAMPLMAAAQSAPASLPLLVGQGAGGTSYSVPIQTLLFFTALSFLPAILLL 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R +IV S+LR +G S PPN V+I L+LF+T +VM PTLD+ + P N
Sbjct: 65 MTGFTRIVIVLSLLRQALGTQSAPPNQVVIGLSLFLTMFVMGPTLDKVYQDAYLPYTQNS 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
I+ A+++ P FM TR+ D +LF +A T + R+L+P+F+
Sbjct: 125 ISFEQAMEKAEAPMRGFMLKQTRQSDFALFKRLAKLDANVT----AETAPLRVLVPAFVT 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P ++LPFK++ FVL DGW+L++
Sbjct: 181 SELKTAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLII 240
Query: 239 ENLVKSF 245
+L SF
Sbjct: 241 GSLAASF 247
>gi|188997535|ref|YP_001931786.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932602|gb|ACD67232.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 337
Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 152/242 (62%), Gaps = 5/242 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
Y ++ +V L F+ S A + ++ + TI+SIAP LLI VT F
Sbjct: 100 YLIISIIIVLTLLNFSFSYADTFSETLAGFNRLDTTLKILLLITIISIAPALLISVTAFV 159
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R +IV S+LR +G+ + PPN VI+ LALF+T +VM PT D+ E+ I P + QI++
Sbjct: 160 RIVIVLSLLRHALGIPTAPPNQVIVGLALFLTIFVMKPTFDKINEVSISPYLKKQISDIQ 219
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
AI+ EP FM NTR++DL LF+D+A+ I LIP+FMISE++
Sbjct: 220 AIENAKEPLKEFMLKNTRKEDLKLFLDLANEKP-----LSPKDISISTLIPAFMISEIKT 274
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+FEI F+I LPFL+ID IVA+I+M+MGMMM+PP ISLPFK++ FVL DG+ LLV+ LV
Sbjct: 275 AFEIVFIIYLPFLVIDFIVASILMSMGMMMIPPMFISLPFKLMLFVLADGFELLVKALVS 334
Query: 244 SF 245
S+
Sbjct: 335 SY 336
>gi|300854220|ref|YP_003779204.1| flagellar biosynthesis protein FliP [Clostridium ljungdahlii DSM
13528]
gi|300434335|gb|ADK14102.1| flagellar biosynthesis protein FliP [Clostridium ljungdahlii DSM
13528]
Length = 266
Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats.
Identities = 98/255 (38%), Positives = 149/255 (58%), Gaps = 13/255 (5%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPA-----------DLSISTWIVRTFGIFTILS 50
I F + + V+A M IP ++ T+++
Sbjct: 13 ISILIFVILVFKAHSVYAAPDASQTMPIPNINVSMDNAGTSTPQQYVQNIKLLIFLTVIT 72
Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
+ P ++M+T F R I+VF LR+ MG PPN ++I LALFMT ++M P +
Sbjct: 73 LLPSFVMMMTSFVRIIVVFGFLRSAMGTQQSPPNSILIGLALFMTVFIMYPVYSKMNTNA 132
Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170
I+P M N+IT+ AI A+P FM T +KDL LF+D A +++ T +
Sbjct: 133 IEPYMQNKITQQQAIDEGAKPIRSFMLKQTYKKDLQLFIDQAKLNYKVT--ADGQNAPLY 190
Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
+++P++MISEL+ +FEIGFLI +PF++IDM+V++++MAMGM MLPPT ISL FK++ FV+
Sbjct: 191 VVVPAYMISELKTAFEIGFLIYIPFMVIDMVVSSVLMAMGMFMLPPTMISLAFKLLLFVM 250
Query: 231 IDGWSLLVENLVKSF 245
+DGW LLV++L+ SF
Sbjct: 251 VDGWYLLVKSLIVSF 265
>gi|296534353|ref|ZP_06896817.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC
49957]
gi|296265319|gb|EFH11480.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC
49957]
Length = 258
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 105/224 (46%), Positives = 156/224 (69%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
SL+ + P + +T +V+ + +LS+AP LL+MVT F R IV S+LR+ +G V
Sbjct: 35 SLNLDLGQPGEAGATTRLVQLTALIGLLSLAPSLLVMVTAFARISIVLSLLRSAIGAPGV 94
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN V+I LALF+TF+VM P L+ S G+QP+ Q+ E +Q AEPF FM + R
Sbjct: 95 PPNPVLIGLALFLTFFVMQPVLEASWTQGLQPMAAGQLGEIEGLQAAAEPFRGFMLAHAR 154
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+ D++LF+D+A+ + + +R+L+P+F++ ELRR+FEIGFLI LPFL+ID++
Sbjct: 155 DSDIALFLDLANLP----AVEEPARTPWRVLVPAFLVGELRRAFEIGFLIFLPFLVIDIV 210
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++M +GMMMLPP ++SLPFK+IFFVL+DGW L+ +LV+ F
Sbjct: 211 VASVLMGLGMMMLPPNTVSLPFKLIFFVLVDGWRLVSGSLVQGF 254
>gi|322382378|ref|ZP_08056285.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp.
larvae B-3650]
gi|321153731|gb|EFX46106.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp.
larvae B-3650]
Length = 255
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 92/223 (41%), Positives = 150/223 (67%), Gaps = 4/223 (1%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
D+ ++ ++ V + T+LS+AP LI++T F R +IV +RT +G +P
Sbjct: 35 GIDIKVGGDSVNGASSTVTILLLLTVLSLAPAFLILMTSFTRIVIVLGFVRTSLGTQQMP 94
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN V++ LALF+T ++M+PTL ++ +QP + ++ +T A+++ AEP FM ++TR
Sbjct: 95 PNQVLVGLALFLTLFIMAPTLGDINQVAVQPYIKGELNQTQALEKAAEPIKKFMWSHTRP 154
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
KDL LF+D +++ N + L+P+F ISEL+ +F++GF+I +PFL+IDMI+
Sbjct: 155 KDLQLFLDYSNAEKPNG----PEDTPIAALVPAFAISELKTAFQMGFMIFIPFLVIDMII 210
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++ +MAMGMMMLPP ISLPFK++ FVL+DGW L+V++L+ S+
Sbjct: 211 SSTLMAMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLVSY 253
>gi|163800128|ref|ZP_02194029.1| putative flagellar assembly protein [Vibrio sp. AND4]
gi|159175571|gb|EDP60365.1| putative flagellar assembly protein [Vibrio sp. AND4]
Length = 255
Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats.
Identities = 79/235 (33%), Positives = 128/235 (54%), Gaps = 4/235 (1%)
Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
P + ++ + ++ + T LS P ++M T F R I+V +
Sbjct: 24 FSLPTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLA 83
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
ILR +G+ PPN V++ +AL +T +M P + +P N +IT A +
Sbjct: 84 ILRQALGLQQSPPNRVLVGIALALTLLIMRPVWTDIHDNAFKPYDNGEITLMQAFSVAEK 143
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM T + L + +A+ + I + +++P+F+ISEL+ +F+IGF+
Sbjct: 144 PVRNFMLAQTHQSSLEQMLRIANEP----IDQNIEDISFAVVLPAFVISELKTAFQIGFM 199
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V L SF
Sbjct: 200 LFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVIFVLVDGWAMTVGTLSASF 254
>gi|51246523|ref|YP_066407.1| flagellar biosynthesis protein FliP [Desulfotalea psychrophila
LSv54]
gi|50877560|emb|CAG37400.1| probable flagellar biosynthetic protein (FliP) [Desulfotalea
psychrophila LSv54]
Length = 260
Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats.
Identities = 86/246 (34%), Positives = 148/246 (60%), Gaps = 6/246 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNI--PADLSISTWIVRTFGIFTILSIAPILLIMV 59
I + L + +A + + + + ++ + TI+S+AP +++M+
Sbjct: 18 ILFLATISLLTSSHPSWAVGLPNITLGLEDADSPEKVSAALQILFVLTIISVAPAIVLMM 77
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
TCF R +IV +R MG ++PPN ++I ALF+TF++MSPT+++ + +QP + +I
Sbjct: 78 TCFTRIVIVLGFVRQAMGTQNMPPNQIVIGFALFLTFFIMSPTINKINDTALQPYLAKEI 137
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
++ A+ FM + +E +LS ++ I LIP++M+S
Sbjct: 138 SQGKALDLTVFSMREFMFSQVQESELSFMAELTIEKEPKDKA----DIPTTTLIPAYMLS 193
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +F +GF++ +PFL+IDMIVA+++M+MGMMMLPP IS+PFK++ F+L+DGW+L+V
Sbjct: 194 ELKTAFSMGFMVYIPFLVIDMIVASVLMSMGMMMLPPVIISMPFKLLLFILVDGWTLIVG 253
Query: 240 NLVKSF 245
+LVKSF
Sbjct: 254 SLVKSF 259
>gi|262276385|ref|ZP_06054194.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886]
gi|262220193|gb|EEY71509.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886]
Length = 277
Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 139/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ P + ++ + T L P ++I++T F R ++V +ILR MG+
Sbjct: 58 PALTMTVNPDGTEDYSVTLQILALMTALGFLPAIVILMTSFTRIVVVMAILRQAMGLQQT 117
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +A+F+T ++MSP +DR +QP +N +IT A RV P FM TR
Sbjct: 118 PSNQVIIGIAMFLTLFIMSPVIDRMNVAAVQPYLNEEITAREAFDRVQVPLREFMLQQTR 177
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++M+ +T+ + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 178 VKDLETFVNMSG-----AQVTEAEQVPMTVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 232
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 233 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 276
>gi|207728358|ref|YP_002256752.1| flagellar biosynthetic protein flip [Ralstonia solanacearum MolK2]
gi|206591604|emb|CAQ57216.1| flagellar biosynthetic protein flip [Ralstonia solanacearum MolK2]
Length = 252
Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats.
Identities = 98/229 (42%), Positives = 141/229 (61%), Gaps = 5/229 (2%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
A+ L ++ A + V+T T L P +L+M++ F R IIV S+LR +
Sbjct: 27 AQAQPGLP-LLTGAAGGQSYSLPVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 85
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G + PPN V+I LALF+TF+VMSP LD+ PL +++I+ A+ A P FM
Sbjct: 86 GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFM 145
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TRE DL+LF M + I D + R LIP+F+ SEL+ SF+IGF I +PFL
Sbjct: 146 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFL 201
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 202 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 250
>gi|218658525|ref|ZP_03514455.1| flagellar biosynthesis protein FliP [Rhizobium etli IE4771]
Length = 238
Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats.
Identities = 139/206 (67%), Positives = 177/206 (85%), Gaps = 2/206 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+RTFG+ TILS+AP +LIMVT FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVM
Sbjct: 34 IRTFGLLTILSVAPGILIMVTSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVM 93
Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
SPT D++ + G+QPL+ NQI ET A+QR+AEPF FM NTR+KDL+LF+D+A R
Sbjct: 94 SPTFDQAWQSGVQPLLANQINETEAVQRIAEPFRTFMAANTRDKDLALFVDLARE--RGQ 151
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+I +D I+YR+LIP+FMISE+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSI
Sbjct: 152 NIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSI 211
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
SLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 212 SLPFKILFFVLIDGWNLLVGSLVRSF 237
>gi|153825580|ref|ZP_01978247.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-2]
gi|149740731|gb|EDM54830.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-2]
Length = 299
Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats.
Identities = 89/224 (39%), Positives = 137/224 (61%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 79 PAFTMTTNSDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 138
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF++M+P ++ E +QP +N QIT A EP FM TR
Sbjct: 139 PSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTR 198
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 199 VNDLETFVEMSG-----AQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 253
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 254 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297
>gi|224370774|ref|YP_002604938.1| FliP [Desulfobacterium autotrophicum HRM2]
gi|223693491|gb|ACN16774.1| FliP [Desulfobacterium autotrophicum HRM2]
Length = 258
Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats.
Identities = 93/242 (38%), Positives = 143/242 (59%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ L + F S + + ++ + TIL++AP +LI++T F
Sbjct: 19 FLGLVLPSMVQGATFPIPSFNFGIGQAQGPEDVAVVLEIIALLTILALAPAILILMTPFT 78
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R I+VF LR +G S PPN V++ LALF+TF+++ P + + P + QI
Sbjct: 79 RIIVVFHFLRQAIGTQSSPPNQVVVGLALFLTFFIIKPVALDVYQNALNPYLERQIDYNE 138
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A P F+ NTRE D++LF+ A + +T + + +LIP+++ISEL+
Sbjct: 139 AFTAAQVPIRNFLLVNTREADIALFVKGAGVAKPDT----REDVSLMLLIPAYVISELKT 194
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F IGF+I +PFL+IDM+VA++++AMGMMMLPP ISLPFK++ FVL+DGW LL +L+K
Sbjct: 195 AFIIGFVIYVPFLVIDMVVASVLLAMGMMMLPPVMISLPFKLMLFVLVDGWHLLTGSLLK 254
Query: 244 SF 245
SF
Sbjct: 255 SF 256
>gi|329901241|ref|ZP_08272766.1| Flagellar biosynthesis protein fliP [Oxalobacteraceae bacterium
IMCC9480]
gi|327549173|gb|EGF33765.1| Flagellar biosynthesis protein fliP [Oxalobacteraceae bacterium
IMCC9480]
Length = 251
Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats.
Identities = 98/242 (40%), Positives = 147/242 (60%), Gaps = 7/242 (2%)
Query: 7 FALFLVTPELVFAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+V P +A+ + + T ++T + T LS P L+M+T F
Sbjct: 13 AVALVVLPLAAYAQQAGLPALTSTPTAGGGQNYTLSLQTLLLLTALSFLPAALLMMTSFT 72
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R IIV S+LR +G S PPN V++ LALF+T +VM P D+ PL N+I T
Sbjct: 73 RIIIVLSLLRQALGTQSAPPNQVMVGLALFLTLFVMGPVFDKIYADAYLPLQENKINMTQ 132
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A++R A P FM TR+ DL+L++ M++S + D + RIL+P+F+ SEL+
Sbjct: 133 AMERGAAPLKAFMMKQTRQADLALYVKMSNSP----ALQGPDDVPLRILVPAFITSELKT 188
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+I F I +PFLIIDM+VA+++M+MGMMM+ P+ +SLPFK++ FVL+DGW LL+ +L +
Sbjct: 189 AFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPSIVSLPFKLMLFVLVDGWQLLIGSLAQ 248
Query: 244 SF 245
SF
Sbjct: 249 SF 250
>gi|167464152|ref|ZP_02329241.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 257
Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats.
Identities = 92/223 (41%), Positives = 150/223 (67%), Gaps = 4/223 (1%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
D+ ++ ++ V + T+LS+AP LI++T F R +IV +RT +G +P
Sbjct: 37 GIDIKVGGDSVNGASSTVTILLLLTVLSLAPAFLILMTSFTRIVIVLGFVRTSLGTQQMP 96
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN V++ LALF+T ++M+PTL ++ +QP + ++ +T A+++ AEP FM ++TR
Sbjct: 97 PNQVLVGLALFLTLFIMAPTLGDINQVAVQPYIKGELNQTQALEKAAEPIKKFMWSHTRP 156
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
KDL LF+D +++ N + L+P+F ISEL+ +F++GF+I +PFL+IDMI+
Sbjct: 157 KDLQLFLDYSNAEKPNG----PEDTPIAALVPAFAISELKTAFQMGFMIFIPFLVIDMII 212
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++ +MAMGMMMLPP ISLPFK++ FVL+DGW L+V++L+ S+
Sbjct: 213 SSTLMAMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLVSY 255
>gi|330502776|ref|YP_004379645.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01]
gi|328917062|gb|AEB57893.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01]
Length = 261
Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats.
Identities = 93/224 (41%), Positives = 138/224 (61%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ I T LS P ++++T F R IIVFSILR +G+
Sbjct: 39 PAITLSTDAEGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQT 98
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N +++ LALF+T ++M+P DR +QP +N +I A+ R P FM TR
Sbjct: 99 PSNQILVGLALFLTMFIMAPVFDRINTDALQPYLNEEIIAQEALTRAEGPIRDFMLAQTR 158
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
E DL+LF+ ++ TD+ + + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+
Sbjct: 159 ESDLALFVRLSKR----TDLAGVEDVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMV 214
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+I+MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 215 VASILMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLAASF 258
>gi|295097216|emb|CBK86306.1| flagellar biosynthetic protein FliP [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 247
Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats.
Identities = 97/245 (39%), Positives = 153/245 (62%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I + L+ P ++ + + T ++T + + + P +L+M+T
Sbjct: 5 LIARAATGVGLLLPVASALAANGDITLASSPGSAGWTLPIQTLLLLSGFTFIPAVLLMMT 64
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R +IV ++R +G + PPN V++ LALF+TF+VMSP L++ E QPL N+IT
Sbjct: 65 GFTRIVIVLGLMRNALGTPTAPPNQVLVGLALFLTFFVMSPVLNQIYEQAWQPLQANKIT 124
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
TA++ +P FM TRE DL++F +A + +T + + IL+PSF+ SE
Sbjct: 125 METALKEGVKPLRAFMLEQTREADLAMFARIAKTPT----LTGPEDVPLSILVPSFVTSE 180
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +
Sbjct: 181 LKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 240
Query: 241 LVKSF 245
L +SF
Sbjct: 241 LAQSF 245
>gi|121586791|ref|ZP_01676573.1| flagellar biosynthetic protein FliP [Vibrio cholerae 2740-80]
gi|121548958|gb|EAX58997.1| flagellar biosynthetic protein FliP [Vibrio cholerae 2740-80]
Length = 299
Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats.
Identities = 89/224 (39%), Positives = 137/224 (61%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 79 PAFTMTTNSDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 138
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF++M+P ++ E +QP +N QIT A EP FM TR
Sbjct: 139 PSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTR 198
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 199 VNDLETFVEMSG-----AQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 253
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 254 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297
>gi|24374730|ref|NP_718773.1| flagellar biosynthesis protein FliP [Shewanella oneidensis MR-1]
gi|24349390|gb|AAN56217.1|AE015759_9 flagellar biosynthetic protein FliP [Shewanella oneidensis MR-1]
Length = 247
Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats.
Identities = 88/247 (35%), Positives = 144/247 (58%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIM 58
++ + + L A L V + + ++ + T LS P ++IM
Sbjct: 4 ILTFIGLSTLLFVTSAGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFIPAMVIM 63
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D+ + G++P ++ Q
Sbjct: 64 LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQ 123
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+T A + EP FM R DL F+D++ + I + +L+P+F+
Sbjct: 124 LTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDISGYQN----INSPEEAPMSVLVPAFIT 179
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW L++
Sbjct: 180 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVM 239
Query: 239 ENLVKSF 245
L SF
Sbjct: 240 GTLANSF 246
>gi|154686052|ref|YP_001421213.1| flagellar biosynthesis protein FliP [Bacillus amyloliquefaciens
FZB42]
gi|154351903|gb|ABS73982.1| FliP [Bacillus amyloliquefaciens FZB42]
Length = 221
Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats.
Identities = 92/217 (42%), Positives = 145/217 (66%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ + V+ + T+ S+AP +LI++TCF R +IV S +RT + ++PPN V+I
Sbjct: 9 NSNSPTEVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQNMPPNQVLI 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF++M+PT + + PLM+N+I+ A + +P +M +TR+KDL+LF
Sbjct: 69 GLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYTKAEKPIKEYMSKHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
M+ A I ++P++ ISEL+ +F++GF+I +PFLIIDM+VA+++M+
Sbjct: 129 MNYAKMKKP----ESIQDIPLTTMVPAYAISELKTAFQMGFMIFIPFLIIDMVVASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+V++L+ SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLDSF 221
>gi|294500924|ref|YP_003564624.1| flagellar biosynthetic protein FliP [Bacillus megaterium QM B1551]
gi|294350861|gb|ADE71190.1| flagellar biosynthetic protein FliP [Bacillus megaterium QM B1551]
Length = 222
Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats.
Identities = 96/217 (44%), Positives = 150/217 (69%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ + + V+ + T+ S+AP +LIM+TCF R +IV S +RT +G +PPN +++
Sbjct: 9 NSSSPTNISTSVQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILV 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
L+LF+TF++M+PT + E +QPL+ +IT A ++ AEP FM +TR+KDL+LF
Sbjct: 69 GLSLFLTFFIMAPTFSQVNEQALQPLLKEKITLNQAYEKAAEPMKEFMSAHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
++ A + I L+P++ ISEL+ +F+IGF+I +PFLIIDMI+A+++M+
Sbjct: 129 LEYADIDRP----SSVQDIPLTALVPAYAISELKTAFQIGFMIFIPFLIIDMIIASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW+L+V++L+ SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISF 221
>gi|296330850|ref|ZP_06873325.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|296151855|gb|EFG92729.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
spizizenii ATCC 6633]
Length = 221
Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 98/217 (45%), Positives = 147/217 (67%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+D + V+ + T+ S+AP +LI++TCF R +IV S +RT + S+PPN V+I
Sbjct: 9 SSSDPENVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLI 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF++M+PT + + PLM+N+I+ A + EP FM +TR+KDL+LF
Sbjct: 69 GLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYSKAEEPIKEFMSKHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
M+ A I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+
Sbjct: 129 MNYAKMDKP----ESLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
>gi|15642122|ref|NP_231754.1| flagellar biosynthesis protein FliP [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121727223|ref|ZP_01680390.1| flagellar biosynthetic protein FliP [Vibrio cholerae V52]
gi|147674933|ref|YP_001217644.1| flagellar biosynthesis protein FliP [Vibrio cholerae O395]
gi|153818972|ref|ZP_01971639.1| flagellar biosynthetic protein FliP [Vibrio cholerae NCTC 8457]
gi|153822891|ref|ZP_01975558.1| flagellar biosynthetic protein FliP [Vibrio cholerae B33]
gi|227082248|ref|YP_002810799.1| flagellar biosynthetic protein FliP [Vibrio cholerae M66-2]
gi|229507792|ref|ZP_04397297.1| flagellar biosynthesis protein FliP [Vibrio cholerae BX 330286]
gi|229511971|ref|ZP_04401450.1| flagellar biosynthesis protein FliP [Vibrio cholerae B33]
gi|229513774|ref|ZP_04403236.1| flagellar biosynthesis protein FliP [Vibrio cholerae TMA 21]
gi|229519107|ref|ZP_04408550.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC9]
gi|229522076|ref|ZP_04411493.1| flagellar biosynthesis protein FliP [Vibrio cholerae TM 11079-80]
gi|229524125|ref|ZP_04413530.1| flagellar biosynthesis protein FliP [Vibrio cholerae bv. albensis
VL426]
gi|229607337|ref|YP_002877985.1| flagellar biosynthesis protein FliP [Vibrio cholerae MJ-1236]
gi|254226359|ref|ZP_04919948.1| flagellar biosynthetic protein FliP [Vibrio cholerae V51]
gi|254291359|ref|ZP_04962152.1| flagellar biosynthetic protein FliP [Vibrio cholerae AM-19226]
gi|254849208|ref|ZP_05238558.1| flagellar biosynthesis protein FliP [Vibrio cholerae MO10]
gi|255745138|ref|ZP_05419087.1| flagellar biosynthesis protein FliP [Vibrio cholera CIRS 101]
gi|262153472|ref|ZP_06028602.1| flagellar biosynthesis protein FliP [Vibrio cholerae INDRE 91/1]
gi|262167482|ref|ZP_06035188.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC27]
gi|262191372|ref|ZP_06049562.1| flagellar biosynthesis protein FliP [Vibrio cholerae CT 5369-93]
gi|297582021|ref|ZP_06943940.1| flagellar biosynthetic protein FliP [Vibrio cholerae RC385]
gi|298497855|ref|ZP_07007662.1| flagellar biosynthetic protein FliP [Vibrio cholerae MAK 757]
gi|9656673|gb|AAF95268.1| flagellar biosynthetic protein FliP [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121630468|gb|EAX62861.1| flagellar biosynthetic protein FliP [Vibrio cholerae V52]
gi|125621109|gb|EAZ49454.1| flagellar biosynthetic protein FliP [Vibrio cholerae V51]
gi|126510467|gb|EAZ73061.1| flagellar biosynthetic protein FliP [Vibrio cholerae NCTC 8457]
gi|126519587|gb|EAZ76810.1| flagellar biosynthetic protein FliP [Vibrio cholerae B33]
gi|146316816|gb|ABQ21355.1| flagellar biosynthetic protein FliP [Vibrio cholerae O395]
gi|150422689|gb|EDN14643.1| flagellar biosynthetic protein FliP [Vibrio cholerae AM-19226]
gi|227010136|gb|ACP06348.1| flagellar biosynthetic protein FliP [Vibrio cholerae M66-2]
gi|227014019|gb|ACP10229.1| flagellar biosynthetic protein FliP [Vibrio cholerae O395]
gi|229337706|gb|EEO02723.1| flagellar biosynthesis protein FliP [Vibrio cholerae bv. albensis
VL426]
gi|229341001|gb|EEO06006.1| flagellar biosynthesis protein FliP [Vibrio cholerae TM 11079-80]
gi|229343796|gb|EEO08771.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC9]
gi|229348955|gb|EEO13912.1| flagellar biosynthesis protein FliP [Vibrio cholerae TMA 21]
gi|229351936|gb|EEO16877.1| flagellar biosynthesis protein FliP [Vibrio cholerae B33]
gi|229355297|gb|EEO20218.1| flagellar biosynthesis protein FliP [Vibrio cholerae BX 330286]
gi|229369992|gb|ACQ60415.1| flagellar biosynthesis protein FliP [Vibrio cholerae MJ-1236]
gi|254844913|gb|EET23327.1| flagellar biosynthesis protein FliP [Vibrio cholerae MO10]
gi|255736968|gb|EET92364.1| flagellar biosynthesis protein FliP [Vibrio cholera CIRS 101]
gi|262024054|gb|EEY42749.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC27]
gi|262030709|gb|EEY49343.1| flagellar biosynthesis protein FliP [Vibrio cholerae INDRE 91/1]
gi|262032747|gb|EEY51295.1| flagellar biosynthesis protein FliP [Vibrio cholerae CT 5369-93]
gi|297533716|gb|EFH72558.1| flagellar biosynthetic protein FliP [Vibrio cholerae RC385]
gi|297542188|gb|EFH78238.1| flagellar biosynthetic protein FliP [Vibrio cholerae MAK 757]
Length = 299
Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 89/224 (39%), Positives = 137/224 (61%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 79 PAFTMTTNSDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 138
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF++M+P ++ E +QP +N QIT A EP FM TR
Sbjct: 139 PSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTR 198
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 199 VNDLETFVEMSG-----AQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 253
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 254 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297
>gi|222084871|ref|YP_002543400.1| flagellar biosynthesis transmembrane protein [Agrobacterium
radiobacter K84]
gi|221722319|gb|ACM25475.1| flagellar biosynthesis transmembrane protein [Agrobacterium
radiobacter K84]
Length = 252
Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 147/249 (59%), Positives = 196/249 (78%), Gaps = 6/249 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSS----LHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
++ +++PEL A+ D++N P + S++ WI+RTFG+ TILSIAP +L
Sbjct: 5 LLILSTLVFAILSPELAMAQQLSQQIPTDLLNTPVNGSVAAWIIRTFGLLTILSIAPGIL 64
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
IMVT FPRFII FSILR+GMG+ + P N++++SLALFMTFYVMSPT D++ + G QPL+
Sbjct: 65 IMVTSFPRFIIAFSILRSGMGLATTPSNMILLSLALFMTFYVMSPTFDQAWKDGAQPLLA 124
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
NQI+E A+ R+AEPF FM NNTR+KD+ LF+D+A R + ++ I+YR+LIP+F
Sbjct: 125 NQISEADAVMRIAEPFRTFMANNTRDKDIKLFVDLAQE--RGQTVVIDNKIDYRVLIPAF 182
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
MISE+RR FEIGFL++LPFL+ID+IV+TIVMAMGMMMLPPTSISLPFK++FFVLIDGW+L
Sbjct: 183 MISEIRRGFEIGFLVVLPFLVIDLIVSTIVMAMGMMMLPPTSISLPFKILFFVLIDGWNL 242
Query: 237 LVENLVKSF 245
LV +LV+SF
Sbjct: 243 LVGSLVRSF 251
>gi|212639551|ref|YP_002316071.1| flagellar biosynthesis protein FliP [Anoxybacillus flavithermus
WK1]
gi|212561031|gb|ACJ34086.1| Flagellar biosynthesis pathway, component FliP [Anoxybacillus
flavithermus WK1]
Length = 221
Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 98/217 (45%), Positives = 144/217 (66%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ V+ + T+LSIAP +LIMVT F R +IV S +RT +G +PPN V+I
Sbjct: 9 NNSAPENVATSVKLLLLLTVLSIAPGILIMVTSFTRIVIVLSFVRTALGTQQMPPNQVMI 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
L+LF+TF++M+PT + +QPL + +I A +R P FM +TR+KDL+LF
Sbjct: 69 GLSLFLTFFIMAPTFQQINRDALQPLFDEKINLEQAYERAEAPLKEFMSKHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A + T I L+P+F ISEL+ +F+IGF++ +PFL+IDMIVA+++M+
Sbjct: 129 LSYAGAEQPKT----VQDIPMSALVPAFAISELKTAFQIGFMLFIPFLVIDMIVASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLESF 221
>gi|309779459|ref|ZP_07674220.1| flagellar biosynthetic protein FliP [Ralstonia sp. 5_7_47FAA]
gi|308921700|gb|EFP67336.1| flagellar biosynthetic protein FliP [Ralstonia sp. 5_7_47FAA]
Length = 249
Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 99/246 (40%), Positives = 147/246 (59%), Gaps = 5/246 (2%)
Query: 2 IRYCFFALFLVTPELVFAKS-SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+R L VFA++ ++ A + V+T T L P +++M++
Sbjct: 7 LRCLIALALLGAAPAVFAQAQPGLPLLTGTAGGQSYSLPVQTLVFLTSLGFLPAIILMMS 66
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV S+LR +G + PPN V+I LALF+TF+VMSP LD+ PL +++IT
Sbjct: 67 SFTRIIIVLSLLRHALGTQTSPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKIT 126
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ A P FM TRE DL+LF+ M + I + R LIP+F+ SE
Sbjct: 127 VEQAMDTAATPLRQFMLKQTREPDLALFVKMGNMP----AIASPEQTPMRALIPAFVTSE 182
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF I +PFL+ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +
Sbjct: 183 LKSAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGS 242
Query: 241 LVKSFI 246
L +SF+
Sbjct: 243 LAQSFV 248
>gi|291276476|ref|YP_003516248.1| flagellar biosynthesis protein [Helicobacter mustelae 12198]
gi|290963670|emb|CBG39502.1| flagellar biosynthesis protein [Helicobacter mustelae 12198]
Length = 247
Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 101/245 (41%), Positives = 152/245 (62%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I F F + +++ + P + + T+L +AP L++++T
Sbjct: 6 VIGLFFCIGFAYSIAAAPTIPTVNLSLTAPDTPKQLVTTLNVIIVLTLLVLAPSLVLVMT 65
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R +IVFS LRT +G PP +++SLA+ +TF++M P + S + I P ++ +I+
Sbjct: 66 SFTRLVIVFSFLRTALGTQQSPPTQILVSLAMVLTFFIMEPVVRESYQKAIVPYLDAKIS 125
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
TA R +PF FM NTREKDL+LF + + T + LIP+FMISE
Sbjct: 126 YETAFDRGVQPFKDFMLKNTREKDLALFYRIRKLENPKTSA----DVSLTTLIPAFMISE 181
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFL+ LPFL+IDM+V++I+MAMGMMMLPP ISLPFK++ FVL+DG++LL+ N
Sbjct: 182 LKTAFQIGFLLYLPFLVIDMVVSSILMAMGMMMLPPVMISLPFKILIFVLVDGFNLLIGN 241
Query: 241 LVKSF 245
LV+SF
Sbjct: 242 LVESF 246
>gi|256830495|ref|YP_003159223.1| flagellar biosynthetic protein FliP [Desulfomicrobium baculatum DSM
4028]
gi|256579671|gb|ACU90807.1| flagellar biosynthetic protein FliP [Desulfomicrobium baculatum DSM
4028]
Length = 231
Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 95/227 (41%), Positives = 142/227 (62%), Gaps = 4/227 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
S + + PA+ + + T+LS+AP ++ VT F R IIVF LR MG
Sbjct: 9 PSLSMQLSSGPAEPQKVAVALEIMALLTMLSMAPAFVLTVTSFTRIIIVFHFLRQAMGTQ 68
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
+PPN V+ SLA+FMT +M PT + +QP +N +I A++R P F+ +
Sbjct: 69 QMPPNQVLASLAIFMTVVIMMPTGRTINDTALQPYLNEEIGYGEALERAETPLRTFLFKH 128
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TREKDLS+F + D + IL+P+++ISEL+ F+IGFLI +PFLI+D
Sbjct: 129 TREKDLSVFFSITGLERP----QNKDEVPTMILVPAYLISELKTGFQIGFLIYIPFLILD 184
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+VA+I+++MGMMMLPP +SLPFK++ FV++DGW+L++ +LV SF+
Sbjct: 185 MVVASILLSMGMMMLPPVMVSLPFKILLFVMVDGWNLIIGSLVNSFV 231
>gi|74055044|gb|AAZ95849.1| FliP [Aeromonas hydrophila]
Length = 259
Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 91/218 (41%), Positives = 139/218 (63%), Gaps = 5/218 (2%)
Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
+ + ++ + T LS P ++IM+T F R IIV ILR +G+ P N V+
Sbjct: 41 TMADGSQEYSLTLQVLALMTALSFLPAMVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVL 100
Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
I +ALFM+F++MSP LDR +QP + I A+++ P FM TR KDL+
Sbjct: 101 IGIALFMSFFIMSPVLDRINNEALQPYLAETIQAKEALEKAELPIHQFMLAQTRIKDLNT 160
Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
FM++A+ + K + R+LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+I+M
Sbjct: 161 FMEIANV-----QVDKPAEVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASILM 215
Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
AMGMMML P +SLPFK++ FV++DGW+L++ +L SF
Sbjct: 216 AMGMMMLSPMLVSLPFKLMLFVMVDGWNLILGSLANSF 253
>gi|26991044|ref|NP_746469.1| flagellar biosynthesis protein FliP [Pseudomonas putida KT2440]
gi|24986076|gb|AAN69933.1|AE016632_4 flagellar biosynthetic protein FliP [Pseudomonas putida KT2440]
gi|5921665|gb|AAD01927.2| FliP [Pseudomonas putida]
gi|313497809|gb|ADR59175.1| FliP [Pseudomonas putida BIRD-1]
Length = 251
Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 96/224 (42%), Positives = 139/224 (62%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ N P + ++ I T LS P +I++T F R IIVFSILR +G+
Sbjct: 29 PAITLSNTPDGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQT 88
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N ++ +ALF+T ++M+P DR + +QP + Q+T AI + P FM TR
Sbjct: 89 PSNQLLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTR 148
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+ DL LFM ++ TDI D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+
Sbjct: 149 QSDLDLFMRLSKR----TDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMV 204
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 205 VASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLASSF 248
>gi|16078698|ref|NP_389517.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
subtilis str. 168]
gi|221309513|ref|ZP_03591360.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313837|ref|ZP_03595642.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318760|ref|ZP_03600054.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323032|ref|ZP_03604326.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321315402|ref|YP_004207689.1| flagellar biosynthesis protein FliP [Bacillus subtilis BSn5]
gi|544315|sp|P35528|FLIP_BACSU RecName: Full=Flagellar biosynthetic protein fliP
gi|142931|gb|AAA22453.1| flagellar protein [Bacillus subtilis]
gi|2634007|emb|CAB13508.1| component of the flagellar export machinery [Bacillus subtilis
subsp. subtilis str. 168]
gi|291484188|dbj|BAI85263.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. natto
BEST195]
gi|320021676|gb|ADV96662.1| flagellar biosynthesis protein FliP [Bacillus subtilis BSn5]
Length = 221
Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats.
Identities = 98/217 (45%), Positives = 147/217 (67%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+D + V+ + T+ S+AP +LI++TCF R +IV S +RT + S+PPN V+I
Sbjct: 9 SSSDPENVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLI 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF++M+PT + + PLM+N+I+ A + EP FM +TR+KDL+LF
Sbjct: 69 GLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
M+ A I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+
Sbjct: 129 MNYAKMDKP----ESLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
>gi|295706270|ref|YP_003599345.1| flagellar biosynthetic protein FliP [Bacillus megaterium DSM 319]
gi|294803929|gb|ADF40995.1| flagellar biosynthetic protein FliP [Bacillus megaterium DSM 319]
Length = 222
Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats.
Identities = 96/217 (44%), Positives = 150/217 (69%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ + + V+ + T+ S+AP +LIM+TCF R +IV S +RT +G +PPN +++
Sbjct: 9 NSSSPTNISTSVQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILV 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
L+LF+TF++M+PT + E +QPL+ +IT A ++ AEP FM +TR+KDL+LF
Sbjct: 69 GLSLFLTFFIMAPTFSQVNEQALQPLLKEKITLNQAYEKAAEPMKEFMSAHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
++ A + I L+P++ ISEL+ +F+IGF+I +PFLIIDMI+A+++M+
Sbjct: 129 LEYADIDKP----SSVQDIPLTALVPAYAISELKTAFQIGFMIFIPFLIIDMIIASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW+L+V++L+ SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISF 221
>gi|85711032|ref|ZP_01042092.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
gi|85694945|gb|EAQ32883.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
Length = 249
Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats.
Identities = 97/247 (39%), Positives = 147/247 (59%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIM 58
++ CF L L+ P++ A + V P + ++ I T L+ P ++IM
Sbjct: 5 LLLGCFVLLALLLPDVANAMQDISAVTVKTNPDGSEEYSVTLQILAIMTALTFIPAMVIM 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R I+V +ILR +G+ P N V+I + LF+TF++MSP L + +QP +N +
Sbjct: 65 MTSFTRIIVVLAILRQAIGLQQSPSNQVLIGITLFLTFFIMSPVLTEINDKALQPYLNEE 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+T A+ R P FM TR D+ F D+A T+I + ILIPSF+
Sbjct: 125 VTSMEAVDRAKAPLKAFMLAQTRVTDIQTFADIAG----ETNIQSPEDTPMSILIPSFIT 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L +
Sbjct: 181 SELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLTM 240
Query: 239 ENLVKSF 245
L SF
Sbjct: 241 STLAGSF 247
>gi|83747643|ref|ZP_00944679.1| FliP [Ralstonia solanacearum UW551]
gi|207739724|ref|YP_002258117.1| flagellar biosynthetic protein flip [Ralstonia solanacearum
IPO1609]
gi|83725695|gb|EAP72837.1| FliP [Ralstonia solanacearum UW551]
gi|206593106|emb|CAQ60012.1| flagellar biosynthetic protein flip [Ralstonia solanacearum
IPO1609]
Length = 249
Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats.
Identities = 98/229 (42%), Positives = 141/229 (61%), Gaps = 5/229 (2%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
A+ L ++ A + V+T T L P +L+M++ F R IIV S+LR +
Sbjct: 24 AQAQPGLP-LLTGAAGGQSYSLPVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G + PPN V+I LALF+TF+VMSP LD+ PL +++I+ A+ A P FM
Sbjct: 83 GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFM 142
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TRE DL+LF M + I D + R LIP+F+ SEL+ SF+IGF I +PFL
Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFL 198
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247
>gi|332558490|ref|ZP_08412812.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides WS8N]
gi|332276202|gb|EGJ21517.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides WS8N]
Length = 267
Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats.
Identities = 90/223 (40%), Positives = 137/223 (61%), Gaps = 4/223 (1%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
+ + + ++ + T L++ P L++ ++ F R IIV SILR +G P
Sbjct: 46 PAITVTEGTGGTSYSLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTP 105
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN V+I+LALF+TF+VM PTL E + P ++ QI AI+R F+ NTR+
Sbjct: 106 PNQVLIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQ 165
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
DL +F D+A + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++
Sbjct: 166 NDLLMFSDLAG----AGPYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVI 221
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+I+MA+GMMML P +SLPFK++ FVL+DGW+L V +L S+
Sbjct: 222 ASILMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAASY 264
>gi|269103167|ref|ZP_06155864.1| flagellar biosynthesis protein FliP [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163065|gb|EEZ41561.1| flagellar biosynthesis protein FliP [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 272
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 91/224 (40%), Positives = 139/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
V P + ++ + T L P ++I++T F R ++V SILR +G+
Sbjct: 52 PAVSVTVNPDGSEDYSVTLQILALMTALGFLPAIVILMTSFTRIVVVMSILRQALGLQQT 111
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF+VMSP LDR +QP +N QIT A+++ P FM TR
Sbjct: 112 PSNQVIIGIALFLTFFVMSPVLDRINAQAVQPYINEQITAPQALEKAKVPMREFMLKQTR 171
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++++ ++ + +LIP+F+ SEL+ +F+IGF++ LPFL+ID++
Sbjct: 172 VKDLETFVNISG-----AKVSDPQQVPMTVLIPAFITSELKTAFQIGFMLFLPFLVIDLV 226
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 227 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 270
>gi|154253010|ref|YP_001413834.1| flagellar biosynthetic protein FliP [Parvibaculum lavamentivorans
DS-1]
gi|154156960|gb|ABS64177.1| flagellar biosynthetic protein FliP [Parvibaculum lavamentivorans
DS-1]
Length = 248
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 113/239 (47%), Positives = 166/239 (69%), Gaps = 4/239 (1%)
Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
AL L++ + + +++ +L ++ IV+ + T+LS+AP +LIMVT F R I
Sbjct: 12 LALVLLSFGVAQPAFAQAIQVDLSDNLGLTDHIVQIVALVTVLSLAPSILIMVTSFVRII 71
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
+V S+LRT +GM PPN V++SLALF+T +VM+PT + GI+PLMN QI A +
Sbjct: 72 VVLSLLRTALGMQQSPPNAVLVSLALFLTAFVMTPTFTTAYNEGIEPLMNQQIETAEAFE 131
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
R + PF FM + R++DL LF+D++ + I ++++P+FMISELRR+FE
Sbjct: 132 RSSVPFKTFMLSQVRKQDLQLFVDLSQTEQPEEAT----DIGLQVIVPAFMISELRRAFE 187
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGFL+ LPF++IDM+VA+++M+MGMMMLPP ISLPFK+IFFVL+DGWSL+ +LV+SF
Sbjct: 188 IGFLVFLPFIVIDMVVASVLMSMGMMMLPPVIISLPFKLIFFVLVDGWSLIAGSLVQSF 246
>gi|117919800|ref|YP_868992.1| flagellar biosynthesis protein FliP [Shewanella sp. ANA-3]
gi|117612132|gb|ABK47586.1| flagellar biosynthetic protein FliP [Shewanella sp. ANA-3]
Length = 248
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 88/247 (35%), Positives = 145/247 (58%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIM 58
++ + + L + A L V + + ++ + T LS P ++IM
Sbjct: 5 ILTFIGVSTLLFAASVGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFIPAMVIM 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D+ + G++P ++ Q
Sbjct: 65 LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQ 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+T A + EP FM R DL F+D++ + I + +L+P+F+
Sbjct: 125 LTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDISGYQN----INSPEEAPMSVLVPAFIT 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW L++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVM 240
Query: 239 ENLVKSF 245
L SF
Sbjct: 241 GTLANSF 247
>gi|313901464|ref|ZP_07834920.1| flagellar biosynthetic protein FliP [Thermaerobacter subterraneus
DSM 13965]
gi|313468270|gb|EFR63728.1| flagellar biosynthetic protein FliP [Thermaerobacter subterraneus
DSM 13965]
Length = 227
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 87/225 (38%), Positives = 142/225 (63%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
++ + ++ + T+LS+AP LL+M+T F R ++ S LR +G
Sbjct: 3 PQVNVTLQPATGPEGLGAALQILLLLTVLSLAPALLVMMTGFTRIVVALSFLRGALGTQQ 62
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN V++ LALF+T +VM+P + + P + +I + A+QR EP FM T
Sbjct: 63 APPNQVLVGLALFLTVFVMAPVWQQVYQDAWIPYRDGRIGQVEALQRAQEPVREFMFRYT 122
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE+DL+LF++++ + D + +LIP+F ISEL+ +F+IGF++ +PFL+IDM
Sbjct: 123 RERDLALFLELSGRG----PVASPDQVPTYVLIPAFAISELKTAFQIGFILYVPFLVIDM 178
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+ +M+MGM+M+PP +SLPFK++ FVL+DGW+L+V +L+ SF
Sbjct: 179 VVASTLMSMGMLMVPPMLVSLPFKILLFVLVDGWNLVVRSLLASF 223
>gi|153836933|ref|ZP_01989600.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
AQ3810]
gi|149749706|gb|EDM60451.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
AQ3810]
Length = 276
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 93/227 (40%), Positives = 139/227 (61%), Gaps = 5/227 (2%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
A + P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 53 AGIPAFTMTTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGL 112
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
P N VII +ALF+TF+VMSP L+ + IQP +N Q+T A P FM
Sbjct: 113 QQTPSNQVIIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDVAQVPMKAFMLK 172
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
TR KDL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLII
Sbjct: 173 QTRIKDLETFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLII 227
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
D++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 228 DLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 274
>gi|120598260|ref|YP_962834.1| flagellar biosynthesis protein FliP [Shewanella sp. W3-18-1]
gi|146293662|ref|YP_001184086.1| flagellar biosynthesis protein FliP [Shewanella putrefaciens CN-32]
gi|120558353|gb|ABM24280.1| flagellar biosynthetic protein FliP [Shewanella sp. W3-18-1]
gi|145565352|gb|ABP76287.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens CN-32]
gi|319427061|gb|ADV55135.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens 200]
Length = 248
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 87/244 (35%), Positives = 142/244 (58%), Gaps = 7/244 (2%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
L V A + + + + + ++ + T LS P ++IM+T
Sbjct: 8 LIGLAILFFSVSVGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFLPAMVIMLTS 67
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+V SILR +G+ P N V+I ++LFMTF++M+P D+ + G++P ++ Q+T
Sbjct: 68 FTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQLTL 127
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A + EP FM R DL F+D++ + I + +L+P+F+ SEL
Sbjct: 128 QQAFDKGKEPLRAFMLGQVRTTDLKTFIDISGYQN----INSPEEAPMSVLVPAFITSEL 183
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW L++ L
Sbjct: 184 KTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVLGTL 243
Query: 242 VKSF 245
SF
Sbjct: 244 ANSF 247
>gi|299068762|emb|CBJ40002.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
[Ralstonia solanacearum CMR15]
Length = 249
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 98/229 (42%), Positives = 141/229 (61%), Gaps = 5/229 (2%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
A+ L ++ A + V+T T L P +L+M++ F R IIV S+LR +
Sbjct: 24 AQAQPGLP-LLTGTAGGQSYSLPVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G + PPN V+I LALF+TF+VMSP LD+ PL +++I+ A+ A P FM
Sbjct: 83 GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYLPLRDSKISVEQALDTAATPLRQFM 142
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TRE DL+LF M + I D + R LIP+F+ SEL+ SF+IGF I +PFL
Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFL 198
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247
>gi|254438171|ref|ZP_05051665.1| flagellar biosynthetic protein FliP [Octadecabacter antarcticus
307]
gi|198253617|gb|EDY77931.1| flagellar biosynthetic protein FliP [Octadecabacter antarcticus
307]
Length = 258
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 88/246 (35%), Positives = 148/246 (60%), Gaps = 8/246 (3%)
Query: 5 CFFALFLVTPELVFAKSSL----HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
A +V V+A+ ++ + + ++ + T+L+I P L+ VT
Sbjct: 16 VILAFCIVPFGSVYAQDGGGLPALNISTGADGETTYSLSLQILALMTVLTILPSFLLGVT 75
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV SILR +G PPN V++S+ALF+TFYVM+PT + I P + +
Sbjct: 76 AFTRIIIVLSILRQALGTQQTPPNQVLLSIALFLTFYVMAPTFEDIYNNAISPYLAGDLP 135
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
AI+ A F+ NTRE +L++F +MA + N+ + Y +L+P+F+ SE
Sbjct: 136 PVAAIEGAAGILSEFLVVNTREAELAMFAEMAG----DEPYASNEDVPYTVLLPAFITSE 191
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFL+ LPFL+ID+++A+I+M++GMMML P ++LPFK++ FVL+DGW++ + +
Sbjct: 192 LKTAFQIGFLLFLPFLVIDLVIASILMSLGMMMLSPMLVALPFKLLLFVLVDGWAMTIGS 251
Query: 241 LVKSFI 246
+ +++
Sbjct: 252 IASTYV 257
>gi|297617154|ref|YP_003702313.1| flagellar biosynthetic protein FliP [Syntrophothermus lipocalidus
DSM 12680]
gi|297144991|gb|ADI01748.1| flagellar biosynthetic protein FliP [Syntrophothermus lipocalidus
DSM 12680]
Length = 259
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 97/250 (38%), Positives = 151/250 (60%), Gaps = 9/250 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADL-----SISTWIVRTFGIFTILSIAPIL 55
++ + + A+ ++I + + ++ + TILS+AP +
Sbjct: 13 VLAAFLIMVVVCLTGEAQAQQFQIPQVSINIGGESQGETGVSQALQILALLTILSLAPAI 72
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
LI++T F R I+V S +R+ + +PPN +++ LALF+TF+VM+PT E +QP
Sbjct: 73 LILLTSFTRIIVVLSFVRSALATQQMPPNQILVGLALFLTFFVMAPTWKEVNEKALQPYF 132
Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
+IT+ A R P FM TREKDL+LF+ MA T + +LIP+
Sbjct: 133 QGEITQDQAFTRGMAPLRTFMFKQTREKDLALFVKMAKIQRPRTY----GDVPNYVLIPA 188
Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
F+ISEL+ +FEIGF+I +PFL+IDM+V++ +M+MGM+MLPP ISLPFK++ FVL+DGW+
Sbjct: 189 FVISELKTAFEIGFIIFVPFLVIDMVVSSALMSMGMLMLPPMMISLPFKILLFVLVDGWN 248
Query: 236 LLVENLVKSF 245
L+V +L+ SF
Sbjct: 249 LVVNSLLMSF 258
>gi|260776473|ref|ZP_05885368.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607696|gb|EEX33961.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC
BAA-450]
Length = 244
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 91/224 (40%), Positives = 139/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 24 PAFTMTTNPDGSEDYSVNLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 83
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +A+F+TF++MSP L+ + IQP +N QIT A P FM TR
Sbjct: 84 PSNQVIIGIAIFLTFFIMSPVLNEINDKAIQPYINEQITARQAFDVAQAPMKDFMLKQTR 143
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++++ +D T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 144 VKDLETFVNISG-----SDATAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 198
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 199 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 242
>gi|254418891|ref|ZP_05032615.1| flagellar biosynthetic protein FliP [Brevundimonas sp. BAL3]
gi|196185068|gb|EDX80044.1| flagellar biosynthetic protein FliP [Brevundimonas sp. BAL3]
Length = 266
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 97/244 (39%), Positives = 151/244 (61%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
A L A +++ + ++ +V+ G+ T+LS+AP ++IM T
Sbjct: 20 TTLVCLAWPLAAFAQDAAAGGSAINIDLGSGAGLTQRVVQLVGLMTVLSLAPSIVIMTTS 79
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R ++V S+LRT +GM PPN V++SLALF++ VM+PT + + GI+PL++ Q+
Sbjct: 80 FVRIVVVLSLLRTALGMQQSPPNAVLVSLALFLSAIVMAPTWQDAYDSGIRPLLDQQMEL 139
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A +EP FM DL+LF ++ + R++ P+FMISEL
Sbjct: 140 PQAFDAASEPVKTFMLAQVDRGDLALFTRLSRVEAP----ANLQELPLRVVTPAFMISEL 195
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+++FEIGFL+ +PFL+ID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGW L+ +L
Sbjct: 196 KKAFEIGFLLFVPFLVIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWRLVAGSL 255
Query: 242 VKSF 245
V+SF
Sbjct: 256 VESF 259
>gi|308173598|ref|YP_003920303.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7]
gi|307606462|emb|CBI42833.1| component of the flagellar export machinery [Bacillus
amyloliquefaciens DSM 7]
gi|328553470|gb|AEB23962.1| flagellar biosynthesis protein FliP [Bacillus amyloliquefaciens
TA208]
gi|328911739|gb|AEB63335.1| component of the flagellar export machinery [Bacillus
amyloliquefaciens LL3]
Length = 221
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 92/217 (42%), Positives = 146/217 (67%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ + + V+ + T+ S+AP +LI++TCF R +IV S +RT + ++PPN V+I
Sbjct: 9 NSSSPTEVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQNMPPNQVLI 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF++M+PT + + PLM+N+I+ A + +P +M +TR+KDL+LF
Sbjct: 69 GLALFLTFFIMAPTFSEINKDALTPLMDNKISLDEAYTKAEKPIKEYMSKHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
M+ A I ++P++ ISEL+ +F++GF+I +PFLIIDM+VA+++M+
Sbjct: 129 MNYAKMKKP----ESIQDIPLTTMVPAYAISELKTAFQMGFMIFIPFLIIDMVVASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+V++L+ SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLDSF 221
>gi|104782808|ref|YP_609306.1| flagellar biosynthesis protein FliP [Pseudomonas entomophila L48]
gi|95111795|emb|CAK16519.1| flagellar biosynthetic protein FliP [Pseudomonas entomophila L48]
Length = 251
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 96/224 (42%), Positives = 138/224 (61%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ N + ++ I T LS P +I++T F R IIVFSILR +G+
Sbjct: 29 PAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQT 88
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N V+ +ALF+T ++M+P +R + IQP + Q+T AI + P FM TR
Sbjct: 89 PSNQVLTGMALFLTMFIMAPVFERVNKDAIQPYLAEQMTAQQAIDKAQGPLKDFMLAQTR 148
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+ DL LFM ++ TDI D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+
Sbjct: 149 QSDLDLFMRLSKR----TDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMV 204
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 205 VASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLAGSF 248
>gi|17548596|ref|NP_521936.1| flagellar biosynthesis protein FliP [Ralstonia solanacearum
GMI1000]
gi|17430844|emb|CAD17526.1| probable flagellar biosynthetic flip transmembrane protein
[Ralstonia solanacearum GMI1000]
Length = 249
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 97/229 (42%), Positives = 141/229 (61%), Gaps = 5/229 (2%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
A+ L ++ A + V+T T L P +L+M++ F R IIV S+LR +
Sbjct: 24 AQAQPGLP-LLTGTAGGQSYSLPVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G + PPN V+I LALF+TF+VMSP LD+ PL +++I+ A+ A P FM
Sbjct: 83 GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYLPLRDSKISVEQALDTAATPLRQFM 142
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TRE DL+LF M + I D + R LIP+F+ SEL+ +F+IGF I +PFL
Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTAFQIGFAIFIPFL 198
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247
>gi|300696945|ref|YP_003747606.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
[Ralstonia solanacearum CFBP2957]
gi|299073669|emb|CBJ53189.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
[Ralstonia solanacearum CFBP2957]
Length = 249
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 98/229 (42%), Positives = 141/229 (61%), Gaps = 5/229 (2%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
A+ L ++ A + V+T T L P +L+M++ F R IIV S+LR +
Sbjct: 24 AQAQPGLP-LLTGAAGGQSYSLPVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G + PPN V+I LALF+TF+VMSP LD+ PL +++I+ A+ A P FM
Sbjct: 83 GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFM 142
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TRE DL+LF M + I D + R LIP+F+ SEL+ SF+IGF I +PFL
Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFL 198
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247
>gi|146307834|ref|YP_001188299.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina ymp]
gi|145576035|gb|ABP85567.1| flagellar biosynthetic protein FliP [Pseudomonas mendocina ymp]
Length = 261
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 94/237 (39%), Positives = 140/237 (59%), Gaps = 4/237 (1%)
Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
L+ + + ++ I T LS P ++++T F R IIV
Sbjct: 26 ASLIQQGSSPLSIPAITLSTDAEGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIV 85
Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
FSILR +G+ P N +++ LALF+T ++M+P DR +QP +N +I A+ R
Sbjct: 86 FSILRQALGLQQTPSNQILVGLALFLTLFIMAPIFDRINTDALQPYLNEEIVAQEALTRA 145
Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
P FM TRE DL+LF+ ++ TD+ + + IL+P+F+ SEL+ +F+IG
Sbjct: 146 EGPIRDFMLAQTRESDLALFVRLSKR----TDLAGVEDVPLTILVPAFVTSELKTAFQIG 201
Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
F+I +PFLIIDM+VA+I+MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 202 FMIFIPFLIIDMVVASILMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLAASF 258
>gi|325273552|ref|ZP_08139782.1| flagellar biosynthesis protein FliP [Pseudomonas sp. TJI-51]
gi|324101312|gb|EGB98928.1| flagellar biosynthesis protein FliP [Pseudomonas sp. TJI-51]
Length = 255
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 96/245 (39%), Positives = 141/245 (57%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M+ + + N + ++ I T LS P +I++T
Sbjct: 12 MLTVALLLAAPLALAADPLSIPAFTLSNTADGQQEYSVSLQILLIMTALSFIPAFVILMT 71
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + Q+T
Sbjct: 72 SFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMT 131
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
AI + P FM TR+ DL LFM ++ TDI D + IL+P+F+ SE
Sbjct: 132 AQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLSKR----TDIAGPDQVPLTILVPAFVTSE 187
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++
Sbjct: 188 LKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGT 247
Query: 241 LVKSF 245
L SF
Sbjct: 248 LASSF 252
>gi|148553144|ref|YP_001260726.1| flagellar biosynthesis protein FliP [Sphingomonas wittichii RW1]
gi|148498334|gb|ABQ66588.1| flagellar biosynthetic protein FliP [Sphingomonas wittichii RW1]
Length = 278
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 89/237 (37%), Positives = 140/237 (59%), Gaps = 4/237 (1%)
Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
T + + I D + ++ + ++L++ P L++M++ F R IIV
Sbjct: 44 ALASTAGPAQTGALDRAMTTIAGDGRPLSLSLQILVLMSLLTVLPSLVLMMSSFTRIIIV 103
Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
S+LR +G+ PPN V++ LA+F++ +VM P++D+ +P QIT AI R
Sbjct: 104 LSLLRQALGLQQTPPNQVLVGLAMFLSLFVMRPSIDQINADAFKPYGAGQITIEEAITRS 163
Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
FM TR+ DL LF D+A + + I + IL+P+F+ SEL+ +F+IG
Sbjct: 164 GAVLHRFMVLQTRQTDLKLFADLAKAPK----FARPADIPFSILLPAFVTSELKTAFQIG 219
Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FLI LPFLIID++VA+ +M++GMMML P IS+PFK++ FVL+DGW+L + +L SF
Sbjct: 220 FLIFLPFLIIDLVVASTLMSLGMMMLSPAIISMPFKLLLFVLVDGWALTMGSLAASF 276
>gi|127512307|ref|YP_001093504.1| flagellar biosynthesis protein FliP [Shewanella loihica PV-4]
gi|126637602|gb|ABO23245.1| flagellar biosynthetic protein FliP [Shewanella loihica PV-4]
Length = 255
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 89/248 (35%), Positives = 147/248 (59%), Gaps = 7/248 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHD---VMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
++ L ++ P+L A+ + V + + ++ + T LS P ++I
Sbjct: 10 ILTPLLLLLAVMAPQLALAQDGILPAVTVTTGADGSTQYSVTMQILLLMTALSFLPAMVI 69
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
M+T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D+ + ++P ++
Sbjct: 70 MLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQAVKPYIDE 129
Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
+T A + EP FM TR DL F+ ++ + I + +LIP+F+
Sbjct: 130 TMTIEQAYDKGKEPLRAFMLAQTRLTDLETFVQISGYQN----IQSPEDAPMSVLIPAFI 185
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL+
Sbjct: 186 TSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLV 245
Query: 238 VENLVKSF 245
+ L SF
Sbjct: 246 MGTLANSF 253
>gi|300693349|ref|YP_003749322.1| flip: flagellar biosynthesis protein. flip/mopc/spap family
[Ralstonia solanacearum PSI07]
gi|299075386|emb|CBJ34681.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
[Ralstonia solanacearum PSI07]
Length = 249
Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats.
Identities = 97/229 (42%), Positives = 141/229 (61%), Gaps = 5/229 (2%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
A+ L ++ A + V+T T L P +L+M++ F R IIV S+LR +
Sbjct: 24 AQAQPGLP-LLTGTAGGQSYSLPVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G + PPN V+I LALF+TF+VMSP LD+ PL +++I+ A+ A P FM
Sbjct: 83 GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKISVEQALDTAATPMRQFM 142
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TRE DL+LF M + I D + R LIP+F+ SEL+ +F+IGF I +PFL
Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTAFQIGFAIFIPFL 198
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247
>gi|298736381|ref|YP_003728907.1| flagellar biosynthesis protein FliP [Helicobacter pylori B8]
gi|298355571|emb|CBI66443.1| flagellar biosynthesis protein (FliP) [Helicobacter pylori B8]
Length = 260
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 106/244 (43%), Positives = 163/244 (66%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P+D + + T+L +AP L++++T
Sbjct: 18 FFILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTS 77
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 78 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 137
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 138 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 193
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 194 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 253
Query: 242 VKSF 245
V SF
Sbjct: 254 VASF 257
>gi|209545574|ref|YP_002277803.1| flagellar biosynthesis protein FliP [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533251|gb|ACI53188.1| flagellar biosynthetic protein FliP [Gluconacetobacter
diazotrophicus PAl 5]
Length = 266
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 103/238 (43%), Positives = 155/238 (65%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
A+ P L A+S D+ D ++ +V+ + TILS+AP LL+MVT F R I+
Sbjct: 31 AVLAGMPTLAHAQSLSLDLGKGMGDAGTTSRLVQLTALITILSLAPSLLVMVTAFTRIIV 90
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
V S+LR +G PPN V+I LALF+TF+VM P +S + GI P+M+ +++E +
Sbjct: 91 VLSLLRGAIGAQGAPPNTVLIGLALFLTFFVMQPVFQQSWDHGIVPMMDGRVSEMEGLTA 150
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
AEPF FM N R D++ F+ +A+ T +R+++P+FMI EL R FE+
Sbjct: 151 AAEPFRTFMLANARPADITTFLHLANVPPPATPAETP----WRVIMPAFMIGELSRGFEM 206
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GFL+ LPFL+ID++ ++++M++GMMMLPP +ISLPFK+IFFV++DGW ++ LV+SF
Sbjct: 207 GFLLYLPFLVIDIVTSSVLMSLGMMMLPPATISLPFKLIFFVMVDGWQMVAGGLVRSF 264
>gi|153011518|ref|YP_001372732.1| flagellar biosynthesis protein FliP [Ochrobactrum anthropi ATCC
49188]
gi|151563406|gb|ABS16903.1| flagellar biosynthetic protein FliP [Ochrobactrum anthropi ATCC
49188]
Length = 246
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 125/226 (55%), Positives = 168/226 (74%), Gaps = 3/226 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
+ D + + S IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+
Sbjct: 23 QPLTLDNLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQ 82
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
+ P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT+ A +++PF FM
Sbjct: 83 TAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMGQ 142
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
R+KDL LF D+A S R D +++R+L+P+FMISELRR FEIGFLI+LPFL+ID
Sbjct: 143 VRDKDLRLFEDLADPSFRTGDDGI---VDFRVLVPAFMISELRRGFEIGFLIVLPFLVID 199
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 200 LVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245
>gi|157376188|ref|YP_001474788.1| flagellar biosynthesis protein FliP [Shewanella sediminis HAW-EB3]
gi|157318562|gb|ABV37660.1| Triacylglycerol lipase [Shewanella sediminis HAW-EB3]
Length = 248
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 92/247 (37%), Positives = 147/247 (59%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIM 58
++ + F+L L++PE L V P + + ++ + T LS P ++IM
Sbjct: 4 ILIFIAFSLLLISPEAFSQGGVLPAVTVTTGPQGETQYSVTMQILLLMTSLSFLPAMVIM 63
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R I+V SILR +G+ P N V+I ++LF+TF++MSP D+ + ++P M
Sbjct: 64 LTSFTRIIVVLSILRQAIGLQQAPSNQVLIGMSLFLTFFIMSPVFDKVYDDAVKPYMEES 123
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+ A + EP FM TR DL F+ ++ + I + ++IPSF+
Sbjct: 124 MGIEEAFNKGKEPIKTFMLAQTRVTDLDTFIQISGYQN----INSPEEAPMSVIIPSFIT 179
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++
Sbjct: 180 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 239
Query: 239 ENLVKSF 245
L SF
Sbjct: 240 GTLANSF 246
>gi|323496545|ref|ZP_08101599.1| flagellar biosynthesis protein FliP [Vibrio sinaloensis DSM 21326]
gi|323318389|gb|EGA71346.1| flagellar biosynthesis protein FliP [Vibrio sinaloensis DSM 21326]
Length = 291
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 88/224 (39%), Positives = 140/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 71 PAFTMTTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 130
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +A+F+TF++MSP L++ E +QP +N QI+ A P FM TR
Sbjct: 131 PSNQVIIGIAIFLTFFIMSPVLNKINEAAVQPYINEQISAREAFDLAQAPMKDFMLKQTR 190
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++++ ++ + + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 191 VKDLETFVNISGAT-----VNNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 245
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 246 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 289
>gi|332981449|ref|YP_004462890.1| flagellar biosynthetic protein FliP [Mahella australiensis 50-1
BON]
gi|332699127|gb|AEE96068.1| flagellar biosynthetic protein FliP [Mahella australiensis 50-1
BON]
Length = 257
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 97/234 (41%), Positives = 149/234 (63%), Gaps = 4/234 (1%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
+++ + + ++ + TILS+AP +LIM+T F R I+V S
Sbjct: 27 AYAAPEIPIPNINVDIEPAQTPQETALSLQILLLLTILSLAPAILIMLTSFTRIIVVLSF 86
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
+R+ +G+ +PPN VII LALF+TF+ M+P + + +QP MN QI + AI P
Sbjct: 87 VRSALGLQQMPPNQVIIGLALFLTFFTMAPVATQINQTALQPYMNGQIEQQQAIDNAMVP 146
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
FM TREKDL+LF++++ + I +LIP+F+ISEL+ +F+IGFLI
Sbjct: 147 LREFMFKETREKDLNLFVNLSGMDKP----EQLSDISSTVLIPAFIISELKTAFQIGFLI 202
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PF++IDM+VAT +M+MGMMM+PP ISLPFKV+ F+++DGW+L+V++L+ SF
Sbjct: 203 YVPFIVIDMVVATTLMSMGMMMIPPVMISLPFKVLLFIMVDGWNLVVQSLITSF 256
>gi|145298356|ref|YP_001141197.1| flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851128|gb|ABO89449.1| Flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 249
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 94/246 (38%), Positives = 150/246 (60%), Gaps = 7/246 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
+ + ++ L A+ + V + + ++ + T LS P ++IM+
Sbjct: 3 LLVGLLSTLVLFSPLALAQDGMSAVTIKTLADGSQEYSLTLQVLALMTALSFLPAVVIMM 62
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIV ILR +G+ P N V+I +ALFM+F++MSP LDR + +QP + I
Sbjct: 63 TSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRINDEALQPYLAETI 122
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
A+++ P FM + TR KDL+ FM++A + + K + R+LIP+F+ S
Sbjct: 123 QAREALEKAELPIHQFMLSQTRIKDLNTFMEIA-----DVQVDKPAEVPLRVLIPAFVTS 177
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +F+IGF++ LPFL+ID++VA+I+MAMGMMML P +SLPFK++ FV++DGW+L++
Sbjct: 178 ELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMLVSLPFKLMLFVMVDGWNLILG 237
Query: 240 NLVKSF 245
+L SF
Sbjct: 238 SLANSF 243
>gi|114046865|ref|YP_737415.1| flagellar biosynthesis protein FliP [Shewanella sp. MR-7]
gi|113888307|gb|ABI42358.1| flagellar biosynthetic protein FliP [Shewanella sp. MR-7]
Length = 248
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 89/247 (36%), Positives = 145/247 (58%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIM 58
++ F+ L + A L V + + ++ + T LS P ++IM
Sbjct: 5 ILTLIGFSTLLFAASVGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFIPAMVIM 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D+ + G++P ++ Q
Sbjct: 65 LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQ 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+T A + EP FM R DL F+D++ + I + +L+P+F+
Sbjct: 125 LTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDISGYQN----INSPEEAPMSVLVPAFIT 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW L++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVM 240
Query: 239 ENLVKSF 245
L SF
Sbjct: 241 GTLANSF 247
>gi|256059603|ref|ZP_05449801.1| flagellar biosynthesis protein FliP [Brucella neotomae 5K33]
gi|261323570|ref|ZP_05962767.1| flagellar biosynthetic protein FliP [Brucella neotomae 5K33]
gi|261299550|gb|EEY03047.1| flagellar biosynthetic protein FliP [Brucella neotomae 5K33]
Length = 246
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 127/242 (52%), Positives = 173/242 (71%), Gaps = 3/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+T ++ D + + S IV+ FG+ T+LSIAP LLIMVT F
Sbjct: 7 LGVILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFT 66
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+PT DR+ G+QPLM N+IT+
Sbjct: 67 RFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPTFDRAWNNGVQPLMRNEITQEA 126
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +++PF FM R+KDL LF D+A S R +D +++R+L+P+FMISELRR
Sbjct: 127 AFGEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRR 183
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++
Sbjct: 184 GFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIR 243
Query: 244 SF 245
SF
Sbjct: 244 SF 245
>gi|241761180|ref|ZP_04759269.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241374799|gb|EER64260.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 316
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 89/230 (38%), Positives = 134/230 (58%), Gaps = 4/230 (1%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
+ + + + T ++ + T++++ P +++M+T F R IIV S+LR +
Sbjct: 90 ASSAAFSKGMNTFLNNGKPLTLSLQILLLMTLMTVLPSIILMMTSFTRIIIVLSLLRQAI 149
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G+ PPN V+I LALF++ +VM P LD+ P +I AI R FM
Sbjct: 150 GLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFSPYGRGEIQIEEAIMRSGTALHGFM 209
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TR+ DL LF D+AH + I + +L+PSF+ SEL+ +FEIGFLI LPF+
Sbjct: 210 TKQTRKNDLQLFTDLAHHPR----YENAESIPFTVLVPSFVTSELKTAFEIGFLIFLPFI 265
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
IID++VA + A+GMMML P IS PFK++ F+++DGW+L V +L SFI
Sbjct: 266 IIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVDGWALTVGSLAGSFI 315
>gi|167037653|ref|YP_001665231.1| flagellar biosynthesis protein FliP [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116068|ref|YP_004186227.1| flagellar biosynthetic protein FliP [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166856487|gb|ABY94895.1| flagellar biosynthetic protein FliP [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929159|gb|ADV79844.1| flagellar biosynthetic protein FliP [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 221
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 94/224 (41%), Positives = 147/224 (65%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+L D+++ S ++ + T+L++AP +LIM+T F R +IV S LR +G+ +
Sbjct: 2 NLGDLVSSVTAPSNMATSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLSFLRNALGLQQM 61
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN V+I LALF+T ++M+P I+P +IT+ A Q +P FM TR
Sbjct: 62 PPNQVLIGLALFLTLFIMAPIGQDINNNAIKPYTEGKITQEEAYQNAIKPLKNFMLKQTR 121
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+ DL+LF+ +A + + + R++IPSF+ISEL+ +FEIGF+I +PFLIID++
Sbjct: 122 QSDLNLFVSLAKIK-----VNNAEDLPMRVVIPSFIISELKTAFEIGFIIYIPFLIIDIV 176
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++M+MGM MLPP ISLPFKV+ F+L+DGW+L+V++L+ F
Sbjct: 177 VASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220
>gi|283853451|ref|ZP_06370695.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. FW1012B]
gi|283571171|gb|EFC19187.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. FW1012B]
Length = 262
Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 145/245 (59%), Gaps = 7/245 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVT 60
L L A+ + +N+ A + + ++ T+LS+AP ++ VT
Sbjct: 20 LVLAGLVLFVAGPALAQDAPTLSLNLAAGQNQPERVSTLLEILFALTVLSLAPSFILTVT 79
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVFS LR MG+ VPP ++ SLA+F+T +M PT + + +QP + +I
Sbjct: 80 SFTRIIIVFSFLRQAMGVPQVPPTQILASLAIFLTCVIMYPTGKQINDDALQPYLEERIG 139
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
T A+++ P F+ +TREKDLS+F + + +L FMISE
Sbjct: 140 FTEALKKAEAPLREFLFKHTREKDLSVFYTVTKMERPKDKA----EVPTMMLAAGFMISE 195
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F IGFLI +PFLI+DM++++I++AMGMMMLPP +I++PFK++ FVL+DGW+L+V +
Sbjct: 196 LKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPPATIAMPFKLLLFVLVDGWALMVGS 255
Query: 241 LVKSF 245
LV SF
Sbjct: 256 LVNSF 260
>gi|261252332|ref|ZP_05944905.1| flagellar biosynthesis protein FliP [Vibrio orientalis CIP 102891]
gi|260935723|gb|EEX91712.1| flagellar biosynthesis protein FliP [Vibrio orientalis CIP 102891]
Length = 275
Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 89/224 (39%), Positives = 140/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ P + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 55 PAFTMTTNPDGSEDYSVNLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 114
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +A+F+TF++MSP L++ + IQP +N QI+ A P FM TR
Sbjct: 115 PSNQVIIGIAIFLTFFIMSPVLNKINDDAIQPYINEQISARQAFDLAQIPMKDFMLKQTR 174
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++++ S+ T + + +LIP+F+ SEL+ +F+IGF++ LPFL+ID++
Sbjct: 175 VKDLETFVNISGST-----ATAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLVIDLV 229
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 230 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 273
>gi|115523185|ref|YP_780096.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
BisA53]
gi|115517132|gb|ABJ05116.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
BisA53]
Length = 244
Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 126/246 (51%), Positives = 168/246 (68%), Gaps = 2/246 (0%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M R ++ P A+ + S S I++ + T+LS+AP LLIMVT
Sbjct: 1 MKRAPLVLFAVLLPTAALAQIPDLSTLIPQGQGSASGRIIQMVALLTVLSLAPGLLIMVT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F RF++ S LRTG+G+ + P N+V+ISLALF+TFYVM+PT DR+ GIQPLM N+IT
Sbjct: 61 SFTRFVVALSFLRTGLGLQTTPANIVMISLALFLTFYVMAPTFDRAWREGIQPLMQNEIT 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
E A RV EPF FM R+KDL F ++A S R + ++ R++IP+FM+SE
Sbjct: 121 EKEAYARVTEPFREFMLAQVRDKDLQTFENLAAESLRAKP--DGERVDLRVIIPAFMVSE 178
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LRR+FEIGFLI++PFL+IDMIVAT+ M+MGMMM+PPT +LPFKV+FFVLIDGW+LL
Sbjct: 179 LRRAFEIGFLIVMPFLVIDMIVATLTMSMGMMMMPPTVFALPFKVLFFVLIDGWNLLAVG 238
Query: 241 LVKSFI 246
LV+SF+
Sbjct: 239 LVRSFL 244
>gi|289523556|ref|ZP_06440410.1| flagellar biosynthetic protein FliP [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289503248|gb|EFD24412.1| flagellar biosynthetic protein FliP [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 252
Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 85/225 (37%), Positives = 140/225 (62%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+L + S ++ + TILS+AP +++MVT F R I+V +R +G+
Sbjct: 31 PTLDINVRPGDSPSDVALTLQIIALITILSLAPAIVLMVTSFTRIIVVLGFVRQSIGLQQ 90
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN V+++LALF+TF+ MSP + I P M +I A + P FM +
Sbjct: 91 LPPNQVLVTLALFLTFFTMSPVWQKIYSESINPYMAGEIATQEAYAKAIGPIRDFMFSQV 150
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
++++LSL + ++ +D + R+LIP+FMI EL+++F++G LI +PF+++DM
Sbjct: 151 KDEELSLMVSLSDLPQP----QNHDDVPTRVLIPAFMIGELKKAFQMGILIFIPFIVVDM 206
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IVA+++++MGM+MLPP ISLPFKV+ FV+ DGW L++ ++V SF
Sbjct: 207 IVASVLLSMGMIMLPPMLISLPFKVLLFVVADGWDLVIYSVVSSF 251
>gi|119775422|ref|YP_928162.1| flagellar biosynthesis protein FliP [Shewanella amazonensis SB2B]
gi|119767922|gb|ABM00493.1| flagellar biosynthetic protein FliP [Shewanella amazonensis SB2B]
Length = 249
Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 89/245 (36%), Positives = 142/245 (57%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M+ + + + V P + + ++ + T LS P ++IM+T
Sbjct: 7 MLFWILAGMASLPAFGADGVLPAVTVTTTPDGGTQYSVTLQILMLMTALSFLPAMVIMLT 66
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R I+ S+LR +G+ P N V+I L+LFMTF++M+P D+ E G++P M +
Sbjct: 67 SFTRIIVTLSLLRQAIGLQQAPSNQVLIGLSLFMTFFIMAPVFDKIYEQGVKPYMEETLP 126
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A +R EP FM + R DL F+++A + I + ++IP+F+ SE
Sbjct: 127 IDQAFERGKEPLKAFMLSQVRITDLETFVNIAGYDN----IKSPEEAPMTVIIPAFITSE 182
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF++ +PFL+ID++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++
Sbjct: 183 LKTAFQIGFMLFVPFLVIDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGT 242
Query: 241 LVKSF 245
L SF
Sbjct: 243 LANSF 247
>gi|260893864|ref|YP_003239961.1| flagellar biosynthetic protein FliP [Ammonifex degensii KC4]
gi|260866005|gb|ACX53111.1| flagellar biosynthetic protein FliP [Ammonifex degensii KC4]
Length = 223
Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 95/225 (42%), Positives = 146/225 (64%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + V+ + T+LS+ P +LI++T F R +IV S+LR+ +G
Sbjct: 2 PPISISIGGTGSPAQVIDAVKILLLLTVLSLVPAILILMTSFTRIVIVLSLLRSALGTHQ 61
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN V++ LALF+T ++M+P +R + I+P + NQIT A R P FM
Sbjct: 62 APPNQVLVGLALFLTVFIMAPVYERINQEAIRPYLANQITRQEAQVRGLRPLKEFMLRQV 121
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF+++AH + + R++IP+F+ISEL+ +F +GFL+ LPFL+IDM
Sbjct: 122 REKDLALFVNLAHLPQP----VNKEELPLRVIIPAFLISELKTAFAMGFLLYLPFLVIDM 177
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGM MLPP ISLPFK++ FVL+DGW L+V++LV+SF
Sbjct: 178 VVASVLMSMGMFMLPPVMISLPFKLLLFVLVDGWYLVVKSLVESF 222
>gi|291326353|ref|ZP_06124191.2| flagellar biosynthetic protein FliP [Providencia rettgeri DSM 1131]
gi|291314687|gb|EFE55140.1| flagellar biosynthetic protein FliP [Providencia rettgeri DSM 1131]
Length = 215
Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 95/216 (43%), Positives = 140/216 (64%), Gaps = 4/216 (1%)
Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
+ V+T T+L P LL+M+T F R IIV +LR +G S PPN V++
Sbjct: 2 ADGGQTWSLPVQTLLFLTLLGFIPALLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLG 61
Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
LALF+TF+VMSP D+ QP ++I+ TA+++ P FM TRE DL+LF
Sbjct: 62 LALFLTFFVMSPVADQVYREAYQPFSEDKISLETALEKGTAPLRTFMLGQTRESDLALFA 121
Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
+A +I + + RIL+P+F+ SEL+ +F+IGF I +PFLIID++VA+++MA+
Sbjct: 122 RIAKVG----EIQEAKDVPLRILVPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMAL 177
Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GMMM+PP ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 178 GMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSF 213
>gi|317051545|ref|YP_004112661.1| flagellar biosynthetic protein FliP [Desulfurispirillum indicum S5]
gi|316946629|gb|ADU66105.1| flagellar biosynthetic protein FliP [Desulfurispirillum indicum S5]
Length = 253
Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 97/226 (42%), Positives = 150/226 (66%), Gaps = 4/226 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + +D S ++ + TIL++AP +L+++T F R +IV S LR MG
Sbjct: 30 PVITFGVESSSDPSNVAVTLQILFLLTILTLAPSILVLMTSFVRILIVLSFLRQAMGTMQ 89
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN V++SLALF+TFY+M PT + ++ +QP +N +I A+ A P FM +T
Sbjct: 90 SPPNQVLVSLALFLTFYIMMPTFQQINDVALQPYLNQEIGTQEALDNAARPLSEFMLKHT 149
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF+ + T + + + L+P+F+ISEL+ +F++GF+I +PFLIIDM
Sbjct: 150 REKDLALFVHFSGDERPATK----EDVSFFTLVPAFVISELKTAFQMGFMIFIPFLIIDM 205
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+VA+ +M+MGMMMLPP IS+PFKVI FVL+DGW+L++ +L++SF+
Sbjct: 206 VVASTLMSMGMMMLPPAMISMPFKVILFVLVDGWNLVMSSLLRSFV 251
>gi|260752858|ref|YP_003225751.1| flagellar biosynthesis protein FliP [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|258552221|gb|ACV75167.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 316
Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 89/230 (38%), Positives = 134/230 (58%), Gaps = 4/230 (1%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
+ + + + T ++ + T++++ P +++M+T F R IIV S+LR +
Sbjct: 90 ASSAAFSKGMSTFLNNGKPLTLSLQILLLMTLMTVLPSIILMMTSFTRIIIVLSLLRQAI 149
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G+ PPN V+I LALF++ +VM P LD+ P +I AI R FM
Sbjct: 150 GLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFSPYGRGEIQIEEAIMRSGTALHGFM 209
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TR+ DL LF D+AH + I + +L+PSF+ SEL+ +FEIGFLI LPF+
Sbjct: 210 TKQTRKNDLQLFTDLAHHPR----YENAESIPFTVLVPSFVTSELKTAFEIGFLIFLPFI 265
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
IID++VA + A+GMMML P IS PFK++ F+++DGW+L V +L SFI
Sbjct: 266 IIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVDGWALTVGSLAGSFI 315
>gi|46204265|ref|ZP_00050254.2| COG1338: Flagellar biosynthesis pathway, component FliP
[Magnetospirillum magnetotacticum MS-1]
Length = 249
Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 107/244 (43%), Positives = 158/244 (64%), Gaps = 8/244 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + A+S D+ + +S ++ + T+LS+AP L++VT
Sbjct: 12 LLIGALCASFLGSTPASAQSLTIDLSS----GGVSERALQLVALVTVLSLAPSALVVVTS 67
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R ++VFSILR+ +G S PPN V+++LALF+T +VM+P ++ GI PL+ +I +
Sbjct: 68 FTRLVVVFSILRSALGTQSAPPNAVLVALALFLTAFVMAPVGRQAYTAGIAPLLAGEIQQ 127
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A +R PF FM N REKDL LF+ MA + + I ++ P+FMISEL
Sbjct: 128 GQAFERTLAPFRAFMLKNVREKDLDLFLKMAKTPPP----ASPEEIGLEVVTPAFMISEL 183
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
R+FEIGFL+ +PF+IID+ V++++MA+GMMM+PPTS+SLPFK+IFFVL+DGWSLLV +L
Sbjct: 184 SRAFEIGFLLFIPFMIIDLAVSSVLMALGMMMMPPTSVSLPFKLIFFVLVDGWSLLVGSL 243
Query: 242 VKSF 245
V+SF
Sbjct: 244 VQSF 247
>gi|23099026|ref|NP_692492.1| flagellar biosynthesis protein FliP [Oceanobacillus iheyensis
HTE831]
gi|22777254|dbj|BAC13527.1| flagellar protein required for flagellar formation [Oceanobacillus
iheyensis HTE831]
Length = 221
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 97/217 (44%), Positives = 142/217 (65%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+D + + V+ + TI S+AP +LI++T F R IIV S +RT + +PPN V+I
Sbjct: 9 SSSDPTNISTSVKLLLLLTIFSLAPGILILMTSFTRIIIVLSFVRTSLATQQMPPNQVLI 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
+ALFM+F++M+PT E G+ PL N +IT A + + P FM +TR+KDL LF
Sbjct: 69 GIALFMSFFIMAPTFTEVYEEGLGPLFNEEITLDEAYENASIPLKEFMAQHTRQKDLELF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
++ + T + I L+P+F ISEL+ +F++GFLI +PFLIIDM VA+I+M+
Sbjct: 129 LNYTQADPPET----IEDIPLTTLVPAFAISELKTAFQMGFLIFIPFLIIDMAVASILMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+ ++L+ F
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLITQSLLGGF 221
>gi|294508622|ref|YP_003572681.1| flagellar biosynthetic protein FliP [Salinibacter ruber M8]
gi|294344951|emb|CBH25729.1| flagellar biosynthetic protein FliP [Salinibacter ruber M8]
Length = 284
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 145/224 (64%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+++ ++ + T+L++AP ++I++T F R ++VFSILR +G+
Sbjct: 62 GGLPQVDLTPSEDGYELPIQLLLLLTVLTLAPAIIILMTSFTRLVVVFSILRRALGLQRS 121
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PP V+I L+LF++ ++M P L+ + ++P ++N+IT+ A R + P FM +TR
Sbjct: 122 PPRQVVIGLSLFLSLFIMQPVLETVHQDALRPYLDNEITQQEAFDRASTPMKRFMLTHTR 181
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+KDL LFMDM D +++P+F+ISELR +F+IGF+I LPFLI+D++
Sbjct: 182 DKDLMLFMDMGEIE----SFEGPDEAPLYVVVPAFVISELRIAFQIGFMIFLPFLIVDLV 237
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+I+M+MGMMMLPP ISLP K++ FVL DGW L+VE+L++ +
Sbjct: 238 VASILMSMGMMMLPPVMISLPIKLLLFVLTDGWYLIVESLMQGY 281
>gi|269960157|ref|ZP_06174533.1| flagellar assembly protein [Vibrio harveyi 1DA3]
gi|269835128|gb|EEZ89211.1| flagellar assembly protein [Vibrio harveyi 1DA3]
Length = 255
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 4/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
P + ++ + ++ + T LS P ++M T F R I+V +ILR
Sbjct: 27 PTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLAILR 86
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+G+ PPN V++ +AL +T +M P + +P N +IT A +P
Sbjct: 87 QALGLQQSPPNRVLVGIALALTLLIMRPVWTDIHDNAFKPYDNGEITLMQAFSVAEKPVR 146
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM T + L + +A+ + I + +++P+F+ISEL+ +F+IGF++ +
Sbjct: 147 NFMLAQTHQSSLEQMLRIANEP----IDQNVEDISFAVVLPAFVISELKTAFQIGFMLFI 202
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V L SF
Sbjct: 203 PFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTLSASF 254
>gi|260768789|ref|ZP_05877723.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
gi|260616819|gb|EEX42004.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
gi|315180492|gb|ADT87406.1| flagellar biosynthesis protein P [Vibrio furnissii NCTC 11218]
Length = 249
Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 89/242 (36%), Positives = 140/242 (57%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ L + P A+ ++ + S + ++ + T+LS P +IM TCF
Sbjct: 8 WLVAILLVGLPSWASAQDISLFTIHDASGTSEYSAKLQILIMMTMLSFVPAFIIMCTCFT 67
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R IIV SILR +G+ PPN V++ LAL T +M P QP M +IT +
Sbjct: 68 RIIIVLSILRQALGLQQSPPNQVLVGLALVFTLLIMRPVWTEIYADAYQPYMQEKITLSE 127
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
AI A+P +M T+ + L +A S +D I + IL+P++++SEL+
Sbjct: 128 AISTGAKPLHHYMLAQTQVQTLEQVTKIAGESL----AENDDDIPFLILLPAYVLSELKI 183
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF++ LPFL+ID++VA+++M+MGMMML P +SLPFK++ FV++DGW +LV +L +
Sbjct: 184 AFQIGFMVFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFKLLVFVVVDGWGMLVSSLSQ 243
Query: 244 SF 245
SF
Sbjct: 244 SF 245
>gi|254292926|ref|YP_003058949.1| flagellar biosynthetic protein FliP [Hirschia baltica ATCC 49814]
gi|254041457|gb|ACT58252.1| flagellar biosynthetic protein FliP [Hirschia baltica ATCC 49814]
Length = 255
Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 106/230 (46%), Positives = 157/230 (68%), Gaps = 4/230 (1%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
A + ++ +++ IV G+ TILS+AP +L+M T F R ++V S+LRT M
Sbjct: 25 APAGIAQEFNFDLGTGAGMTSGIVEMLGVITILSLAPSILVMTTSFVRIVVVLSLLRTAM 84
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G+ PPN VIISL+LF+T +VM+PT + + + G++P M I A+ R A P FM
Sbjct: 85 GLQQAPPNAVIISLSLFLTAFVMAPTFEAAYKEGVEPFMAESIGLEDALPRAAAPIKTFM 144
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
+ ++ DL+LFM MA+ + + +++L P+FMISEL+R+FEIGF+I LPFL
Sbjct: 145 AKHVQDDDLALFMGMANIET----LESAEAAPFQVLAPAFMISELKRAFEIGFMIFLPFL 200
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ID++VA+I+M+MGMMMLPP +IS+PFK+IFFVL+DGW LL +LV+SF+
Sbjct: 201 VIDLVVASILMSMGMMMLPPVTISMPFKLIFFVLVDGWRLLAGSLVESFV 250
>gi|262273547|ref|ZP_06051361.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886]
gi|262222525|gb|EEY73836.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886]
Length = 243
Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 90/241 (37%), Positives = 140/241 (58%), Gaps = 4/241 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
F FL+ F + + P + ++ F + T+LS P +L+MVT F R
Sbjct: 6 LFIIFFLLFSLPAFGQDLPVLTVTGPDGTEEYSVKMQIFLLMTMLSFLPAMLLMVTSFTR 65
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIV ILR +G+ PPN V++ +AL +T + M P L E ++P N ++ A
Sbjct: 66 IIIVLGILRQAIGLQQSPPNTVLVGIALILTLFTMRPVLTDIHENAVKPYQNGTLSLQQA 125
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+ +P FM TRE DL + +A+ + I+ +L+P+F++SEL+ +
Sbjct: 126 VSVAEKPLKAFMLQQTRETDLDQILRIANEP----PHQAGEDIDLLLLMPAFVLSELKTA 181
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F+IGF++ +PFLIID++V++++MAMGMMML P ISLPFK++ FV++DGWS+LV L S
Sbjct: 182 FQIGFMLFVPFLIIDIVVSSVLMAMGMMMLSPLIISLPFKLMIFVMVDGWSMLVGTLTAS 241
Query: 245 F 245
F
Sbjct: 242 F 242
>gi|327481256|gb|AEA84566.1| flagellar biosynthesis protein FliP [Pseudomonas stutzeri DSM 4166]
Length = 258
Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 99/259 (38%), Positives = 144/259 (55%), Gaps = 18/259 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSL--------------HDVMNIPADLSISTWIVRTFGIF 46
M+R A ++ L A+ + + ++ I
Sbjct: 1 MLRILLLATLMLVGPLAMAQEPSGILAQGNNPLSIPAITLTTDAEGQQEYSVSLQILLIM 60
Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
T LS P ++++T F R IIVFSILR +G+ P N ++I L LF+T ++M+P DR
Sbjct: 61 TALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILIGLTLFLTLFIMAPVFDRI 120
Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
+ +QP ++ QI AI R P FM TRE DL LF+ ++ TDI +
Sbjct: 121 NQDALQPYLSEQIPAQEAIARAEVPLKNFMLAQTRESDLELFVRLSQR----TDIASPEA 176
Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK++
Sbjct: 177 APMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIM 236
Query: 227 FFVLIDGWSLLVENLVKSF 245
FVL+DGW L++ L SF
Sbjct: 237 LFVLVDGWGLIIGTLAGSF 255
>gi|297379879|gb|ADI34766.1| flagellar biosynthetic protein FliP [Helicobacter pylori v225d]
Length = 248
Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 105/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P D + + T+L +AP L++++T
Sbjct: 6 FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P ++ +I+
Sbjct: 66 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYVDKKISY 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 126 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 241
Query: 242 VKSF 245
V SF
Sbjct: 242 VASF 245
>gi|89899371|ref|YP_521842.1| flagellar biosynthesis protein FliP [Rhodoferax ferrireducens T118]
gi|89344108|gb|ABD68311.1| flagellar biosynthetic protein FliP [Rhodoferax ferrireducens T118]
Length = 260
Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 92/245 (37%), Positives = 145/245 (59%), Gaps = 4/245 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ A+ + L + L +M + ++T FT LS P +L+M+T
Sbjct: 19 VAVVLLAILTQSAALAQSAGQLPLLMGSGPSGVSFSVPIQTLLFFTALSFLPAVLLMMTG 78
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R +IV S++R +G S PPN VI+ L+LF+TF VM PTLD+ P N+ +
Sbjct: 79 FTRIVIVLSLMRQALGTQSAPPNQVIVGLSLFLTFLVMGPTLDKVYSEAYLPYTNSGMPF 138
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + +P FM TR+ DL+LF +A T + R+L+P+F+ SEL
Sbjct: 139 EQALAKAEDPLRQFMSKQTRQSDLALFAKLAKLEPGAT----AQTVPMRVLVPAFVTSEL 194
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF+I +PFL+ID++VA+++M++GMMML P ++LPFK++ FVL DGW+LL+ +L
Sbjct: 195 KSAFQIGFMIFIPFLVIDIVVASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSL 254
Query: 242 VKSFI 246
SF+
Sbjct: 255 AASFV 259
>gi|251797428|ref|YP_003012159.1| flagellar biosynthetic protein FliP [Paenibacillus sp. JDR-2]
gi|247545054|gb|ACT02073.1| flagellar biosynthetic protein FliP [Paenibacillus sp. JDR-2]
Length = 256
Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 101/247 (40%), Positives = 158/247 (63%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIM 58
+ ++ FA L ++ D S T + + T+LSIAP +L++
Sbjct: 12 ISIVTVVLGVMLLQSHAFAADPLPNLDISIGDGSEEPGTSALSLLLLITVLSIAPAILVL 71
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R +IV +RT +G +PPN V+I LA+F+TF++M+PT + E+ +QP + +
Sbjct: 72 MTSFTRIVIVLGFVRTSLGTQQMPPNQVLIGLAMFLTFFIMAPTFSQVNEVALQPYLKGE 131
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
IT+T A+++ A+P FM ++TREKDL LF++ + K I +L+P++ I
Sbjct: 132 ITQTVALEKAADPMKKFMISHTREKDLLLFLNYTKTEKP----EKYQDIPITVLVPAYAI 187
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F++GF+I +PFL+IDMIVA+ +MAMGMMMLPP ISLPFK++ FVL+DGW L+V
Sbjct: 188 SELKTAFQMGFMIFIPFLVIDMIVASTLMAMGMMMLPPVMISLPFKLLLFVLVDGWYLIV 247
Query: 239 ENLVKSF 245
++L+ SF
Sbjct: 248 KSLLLSF 254
>gi|153828653|ref|ZP_01981320.1| flagellar biosynthetic protein FliP [Vibrio cholerae 623-39]
gi|148875924|gb|EDL74059.1| flagellar biosynthetic protein FliP [Vibrio cholerae 623-39]
Length = 299
Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 89/224 (39%), Positives = 137/224 (61%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 79 PAFTMTTNSDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 138
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF++M+P ++ E +QP +N QIT A EP FM TR
Sbjct: 139 PSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQITALQAFDLAQEPLKAFMLKQTR 198
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 199 VNDLETFVEMSG-----AQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 253
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 254 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297
>gi|167034912|ref|YP_001670143.1| flagellar biosynthesis protein FliP [Pseudomonas putida GB-1]
gi|166861400|gb|ABY99807.1| flagellar biosynthetic protein FliP [Pseudomonas putida GB-1]
Length = 251
Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 95/224 (42%), Positives = 138/224 (61%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ N + ++ I T LS P +I++T F R IIVFSILR +G+
Sbjct: 29 PAITLSNTADGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQT 88
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N ++ +ALF+T ++M+P DR + +QP + Q+T AI + P FM TR
Sbjct: 89 PSNQLLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTR 148
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+ DL LFM ++ TDI D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+
Sbjct: 149 QSDLDLFMRLSKR----TDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMV 204
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 205 VASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLASSF 248
>gi|256158112|ref|ZP_05456030.1| flagellar biosynthesis protein FliP [Brucella ceti M490/95/1]
gi|256252934|ref|ZP_05458470.1| flagellar biosynthesis protein FliP [Brucella ceti B1/94]
gi|261220025|ref|ZP_05934306.1| flagellar biosynthetic protein FliP [Brucella ceti B1/94]
gi|265996629|ref|ZP_06109186.1| flagellar biosynthetic protein FliP [Brucella ceti M490/95/1]
gi|260918609|gb|EEX85262.1| flagellar biosynthetic protein FliP [Brucella ceti B1/94]
gi|262550926|gb|EEZ07087.1| flagellar biosynthetic protein FliP [Brucella ceti M490/95/1]
Length = 246
Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 127/242 (52%), Positives = 173/242 (71%), Gaps = 3/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
F +T ++ D + + S IV+ FG+ T+LSIAP LLIMVT F
Sbjct: 7 LGVILTFALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFT 66
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT+
Sbjct: 67 RFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEA 126
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +++PF FM R+KDL LF D+A S R +D +++R+L+P+FMISELRR
Sbjct: 127 AFGEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRR 183
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++
Sbjct: 184 GFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIR 243
Query: 244 SF 245
SF
Sbjct: 244 SF 245
>gi|56551543|ref|YP_162382.1| flagellar biosynthesis protein FliP [Zymomonas mobilis subsp.
mobilis ZM4]
gi|56543117|gb|AAV89271.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 316
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 89/230 (38%), Positives = 134/230 (58%), Gaps = 4/230 (1%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
+ + + + T ++ + T++++ P +++M+T F R IIV S+LR +
Sbjct: 90 ASSAAFSKGMSTFLNNGKPLTLSLQILLLMTLMTVLPSIILMMTSFTRIIIVLSLLRQAI 149
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G+ PPN V+I LALF++ +VM P LD+ P +I AI R FM
Sbjct: 150 GLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFSPYGRGEIQIEEAIMRSGTALHGFM 209
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TR+ DL LF D+AH + I + +L+PSF+ SEL+ +FEIGFLI LPF+
Sbjct: 210 TKQTRKNDLQLFTDLAHHPR----YENAESIPFTVLVPSFVTSELKTAFEIGFLIFLPFI 265
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
IID++VA + A+GMMML P IS PFK++ F+++DGW+L V +L SFI
Sbjct: 266 IIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVDGWALTVGSLAGSFI 315
>gi|113969635|ref|YP_733428.1| flagellar biosynthesis protein FliP [Shewanella sp. MR-4]
gi|113884319|gb|ABI38371.1| flagellar biosynthetic protein FliP [Shewanella sp. MR-4]
Length = 248
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 88/247 (35%), Positives = 144/247 (58%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIM 58
++ + L + A L V + + ++ + T LS P ++IM
Sbjct: 5 ILTLIGVSTLLFAASVGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFIPAMVIM 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D+ + G++P ++ Q
Sbjct: 65 LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQ 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+T A + EP FM R DL F+D++ + I + +L+P+F+
Sbjct: 125 LTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDISGYQN----INSPEEAPMSVLVPAFIT 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW L++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVM 240
Query: 239 ENLVKSF 245
L SF
Sbjct: 241 GTLANSF 247
>gi|83815985|ref|YP_446686.1| flagellar biosynthesis protein FliP [Salinibacter ruber DSM 13855]
gi|83757379|gb|ABC45492.1| flagellar biosynthetic protein FliP [Salinibacter ruber DSM 13855]
Length = 279
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 145/224 (64%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+++ ++ + T+L++AP ++I++T F R ++VFSILR +G+
Sbjct: 57 GGLPQVDLTPSEDGYELPIQLLLLLTVLTLAPAIIILMTSFTRLVVVFSILRRALGLQRS 116
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PP V+I L+LF++ ++M P L+ + ++P ++N+IT+ A R + P FM +TR
Sbjct: 117 PPRQVVIGLSLFLSLFIMQPVLETVHQDALRPYLDNEITQQEAFDRASTPMKRFMLTHTR 176
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+KDL LFMDM D +++P+F+ISELR +F+IGF+I LPFLI+D++
Sbjct: 177 DKDLMLFMDMGEIE----SFEGPDEAPLYVVVPAFVISELRIAFQIGFMIFLPFLIVDLV 232
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+I+M+MGMMMLPP ISLP K++ FVL DGW L+VE+L++ +
Sbjct: 233 VASILMSMGMMMLPPVMISLPIKLLLFVLTDGWYLIVESLMQGY 276
>gi|315179664|gb|ADT86578.1| flagellar biosynthesis protein FliP [Vibrio furnissii NCTC 11218]
Length = 252
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 81/242 (33%), Positives = 130/242 (53%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ P L ++ + + ++ + T LS P ++M T F
Sbjct: 13 LALVLMLCAWPTLAADNGLTLFTVSDGSTQEEYSVKLQILLLMTALSFLPAFILMATSFT 72
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R I+V +ILR +G+ PPN V++ +AL ++ +M P E +P QIT
Sbjct: 73 RIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWSEVYEHAFKPYDQGQITLMQ 132
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +P FM T++ L + +A+ D I + +++P+F+ISEL+
Sbjct: 133 AFSVAEKPVRNFMLAQTQQSSLEQMLRIANEPLD----QNVDDISFAVVLPAFVISELKT 188
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V L
Sbjct: 189 AFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTLSA 248
Query: 244 SF 245
SF
Sbjct: 249 SF 250
>gi|239834436|ref|ZP_04682764.1| flagellar biosynthetic protein FliP [Ochrobactrum intermedium LMG
3301]
gi|239822499|gb|EEQ94068.1| flagellar biosynthetic protein FliP [Ochrobactrum intermedium LMG
3301]
Length = 246
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 125/245 (51%), Positives = 173/245 (70%), Gaps = 3/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ +T ++ D + + S IV+ FG+ T+LSIAP +LIMVT
Sbjct: 4 LLGLGVILTLALTVSAQAQQALTLDNLLPAGSGAASGQIVQLFGLLTVLSIAPGILIMVT 63
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT
Sbjct: 64 SFTRFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEIT 123
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A +++PF FM R+KDL LF D+A S R D +++R+L+P+FMISE
Sbjct: 124 QQAAFTEISQPFREFMLGQVRDKDLRLFEDLADPSFRTGDDGI---VDFRVLVPAFMISE 180
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +
Sbjct: 181 LRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGS 240
Query: 241 LVKSF 245
L++SF
Sbjct: 241 LIRSF 245
>gi|258592488|emb|CBE68797.1| Flagellar transport protein FliP [NC10 bacterium 'Dutch sediment']
Length = 243
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 147/245 (60%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M F A + F ++ A + T V+ + T+L++AP L+IM+T
Sbjct: 2 MGIGTFVAASPLAVGPSFVPIPQLPLVAGGAGSAEPTVAVQLVILLTLLAMAPALVIMLT 61
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV S LRT MG +PPN V+I L LF+TF+VM+P ++ +QP ++ Q+
Sbjct: 62 SFSRIIIVLSFLRTAMGTQQMPPNQVLIGLTLFLTFFVMAPVGEQINREALQPYLSRQLA 121
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A++R +P FM TRE+DL+L + +A + +L+P++ ISE
Sbjct: 122 QEAALERALQPLRTFMFKQTRERDLALMVHLARLERPKDRAA----VPTHVLVPAYAISE 177
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LR +F+IGF++ +PFL+IDM+V++++++MGM+ LPP IS PFK++ FVL DGW L+V +
Sbjct: 178 LRTAFQIGFVLFIPFLVIDMVVSSVLISMGMLFLPPPVISFPFKLLLFVLADGWHLVVRS 237
Query: 241 LVKSF 245
LV F
Sbjct: 238 LVIGF 242
>gi|254720604|ref|ZP_05182415.1| flagellar biosynthesis protein FliP [Brucella sp. 83/13]
gi|265985644|ref|ZP_06098379.1| flagellar biosynthetic protein FliP [Brucella sp. 83/13]
gi|306838566|ref|ZP_07471403.1| flagellar biosynthetic protein FliP [Brucella sp. NF 2653]
gi|264664236|gb|EEZ34497.1| flagellar biosynthetic protein FliP [Brucella sp. 83/13]
gi|306406352|gb|EFM62594.1| flagellar biosynthetic protein FliP [Brucella sp. NF 2653]
Length = 246
Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 126/242 (52%), Positives = 171/242 (70%), Gaps = 3/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+T ++ D + + S IV+ FG+ T+LSIAP LLIMVT F
Sbjct: 7 LGVILTLALTVSAEAQQALTLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFT 66
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT+
Sbjct: 67 RFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEA 126
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +++PF FM R+KDL LF D+A S R D +++R+L+P+FMISELRR
Sbjct: 127 AFGEISQPFREFMMAQVRDKDLRLFEDLADPSFRTGDDGI---VDFRVLVPAFMISELRR 183
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++
Sbjct: 184 GFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIR 243
Query: 244 SF 245
SF
Sbjct: 244 SF 245
>gi|56964019|ref|YP_175750.1| flagellar biosynthesis protein FliP [Bacillus clausii KSM-K16]
gi|56910262|dbj|BAD64789.1| flagellar biosynthetic protein FliP [Bacillus clausii KSM-K16]
Length = 227
Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 95/215 (44%), Positives = 137/215 (63%), Gaps = 4/215 (1%)
Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
+ V+ + T+L+IAP +LIM+TCF R IIV + +R G+ S PPN V+I L
Sbjct: 16 TNGETMATTVQIALLLTVLTIAPGILIMMTCFTRIIIVLAFVRQGLATQSTPPNQVLIGL 75
Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
ALF+T ++M+P + E PL + + + A + P FM +TREKDL+LFM
Sbjct: 76 ALFITAFIMAPVIQEVYETAYVPLADGEYSSEEAFEAAVVPIKEFMSAHTREKDLALFMG 135
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
D + L+P+F ISEL+ +F+IGFLI +PFL+IDMIVA+++M+MG
Sbjct: 136 YGGYDRP----ASIDDVPLTALVPAFAISELKTAFQIGFLIFIPFLVIDMIVASVLMSMG 191
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MMMLPP I+LPFKV+ FVL+DGW L+V++L+ S+
Sbjct: 192 MMMLPPVMIALPFKVLLFVLVDGWYLVVQSLLISY 226
>gi|332673532|gb|AEE70349.1| flagellar biosynthetic protein FliP [Helicobacter pylori 83]
Length = 248
Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 105/244 (43%), Positives = 161/244 (65%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P D + + T+L +AP L++++T
Sbjct: 6 FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 66 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 126 TEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 241
Query: 242 VKSF 245
V SF
Sbjct: 242 VASF 245
>gi|146277690|ref|YP_001167849.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC
17025]
gi|145555931|gb|ABP70544.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC
17025]
Length = 246
Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 90/244 (36%), Positives = 142/244 (58%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+R L+ FA+ + + + ++ + T L++ P L++ ++
Sbjct: 4 LRVTALVAALLLSGPAFAQGLPALTITESTGGTSYSLSLQILALMTALTVLPSLVLGMSA 63
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIV SILR +G PPN V+I+LALF+TF+VM PTL + P ++ ++
Sbjct: 64 FTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVMQPTLGTLYAEALSPFLDGRLAA 123
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
AI+R F+ NTR+ DL +F D+A + + L+P+FM SEL
Sbjct: 124 EPAIERGGAIMKEFLIANTRQNDLLMFSDLAG----AGPYEDPRDVPFSTLLPAFMTSEL 179
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P +SLPFK++ FVL+DGW+L V +L
Sbjct: 180 KTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSL 239
Query: 242 VKSF 245
++
Sbjct: 240 AATY 243
>gi|170725983|ref|YP_001760009.1| flagellar biosynthesis protein FliP [Shewanella woodyi ATCC 51908]
gi|169811330|gb|ACA85914.1| flagellar biosynthetic protein FliP [Shewanella woodyi ATCC 51908]
Length = 248
Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 88/231 (38%), Positives = 139/231 (60%), Gaps = 7/231 (3%)
Query: 18 FAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
FA+ + + + + ++ + T LS P +LIM+T F R IIV SILR
Sbjct: 20 FAQDGILPAVTVSTGADGDTQYSVTMQILLLMTALSFLPAMLIMLTSFTRIIIVLSILRQ 79
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G+ P N V+I +++F+TF++MSP D+ + ++P MN + A EP
Sbjct: 80 AIGLQQTPSNQVLIGMSMFLTFFIMSPVFDKVYDSAVKPYMNESMNIEQAFHVGKEPIKE 139
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM TR DL F++++ + I D ++IP+F+ SEL+ +F+IGF++ +P
Sbjct: 140 FMLAQTRVTDLETFVEISGYQN----INSVDEAPMSVIIPAFITSELKTAFQIGFMLFVP 195
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ L SF
Sbjct: 196 FLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 246
>gi|323491455|ref|ZP_08096639.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546]
gi|323314324|gb|EGA67404.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546]
Length = 291
Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 138/224 (61%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 71 PAFTMTTNSDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 130
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +A+F+TF++MSP L + + IQP +N QIT A P FM TR
Sbjct: 131 PSNQVIIGIAIFLTFFIMSPVLSKINDDAIQPYINEQITARQAFDLAQTPMKDFMLKQTR 190
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++++ S+ T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 191 VKDLETFVNISGST-----ATAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 245
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 246 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 289
>gi|23499922|ref|NP_699362.1| flagellar biosynthesis protein FliP [Brucella suis 1330]
gi|148558353|ref|YP_001257218.1| flagellar biosynthesis protein FliP [Brucella ovis ATCC 25840]
gi|161620242|ref|YP_001594128.1| flagellar biosynthesis protein FliP [Brucella canis ATCC 23365]
gi|163844351|ref|YP_001622006.1| flagellar biosynthesis protein FliP [Brucella suis ATCC 23445]
gi|225628631|ref|ZP_03786665.1| flagellar biosynthetic protein FliP [Brucella ceti str. Cudo]
gi|225686018|ref|YP_002733990.1| flagellar biosynthesis protein FliP [Brucella melitensis ATCC
23457]
gi|254695296|ref|ZP_05157124.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 3 str.
Tulya]
gi|254702582|ref|ZP_05164410.1| flagellar biosynthesis protein FliP [Brucella suis bv. 3 str. 686]
gi|254706286|ref|ZP_05168114.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis
M163/99/10]
gi|254711420|ref|ZP_05173231.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis B2/94]
gi|254712020|ref|ZP_05173831.1| flagellar biosynthesis protein FliP [Brucella ceti M644/93/1]
gi|254715089|ref|ZP_05176900.1| flagellar biosynthesis protein FliP [Brucella ceti M13/05/1]
gi|256014948|ref|YP_003104957.1| flagellar biosynthesis protein [Brucella microti CCM 4915]
gi|256111937|ref|ZP_05452888.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 3 str.
Ether]
gi|256262859|ref|ZP_05465391.1| flagellar transporter FliP [Brucella melitensis bv. 2 str. 63/9]
gi|260568510|ref|ZP_05838979.1| flagellar transporter FliP [Brucella suis bv. 4 str. 40]
gi|261215665|ref|ZP_05929946.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 3 str.
Tulya]
gi|261216798|ref|ZP_05931079.1| flagellar biosynthetic protein FliP [Brucella ceti M13/05/1]
gi|261313730|ref|ZP_05952927.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis
M163/99/10]
gi|261319028|ref|ZP_05958225.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis B2/94]
gi|261319665|ref|ZP_05958862.1| flagellar biosynthetic protein FliP [Brucella ceti M644/93/1]
gi|261753162|ref|ZP_05996871.1| flagellar biosynthetic protein FliP [Brucella suis bv. 3 str. 686]
gi|265993384|ref|ZP_06105941.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 3 str.
Ether]
gi|23463499|gb|AAN33367.1| flagellar biosynthetic protein FliP [Brucella suis 1330]
gi|148369638|gb|ABQ62510.1| flagellar biosynthetic protein FliP [Brucella ovis ATCC 25840]
gi|161337053|gb|ABX63357.1| flagellar biosynthetic protein FliP [Brucella canis ATCC 23365]
gi|163675074|gb|ABY39184.1| flagellar biosynthetic protein FliP [Brucella suis ATCC 23445]
gi|225616477|gb|EEH13525.1| flagellar biosynthetic protein FliP [Brucella ceti str. Cudo]
gi|225642123|gb|ACO02036.1| flagellar biosynthetic protein FliP [Brucella melitensis ATCC
23457]
gi|255997608|gb|ACU49295.1| flagellar biosynthesis protein [Brucella microti CCM 4915]
gi|260155175|gb|EEW90256.1| flagellar transporter FliP [Brucella suis bv. 4 str. 40]
gi|260917272|gb|EEX84133.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 3 str.
Tulya]
gi|260921887|gb|EEX88455.1| flagellar biosynthetic protein FliP [Brucella ceti M13/05/1]
gi|261292355|gb|EEX95851.1| flagellar biosynthetic protein FliP [Brucella ceti M644/93/1]
gi|261298251|gb|EEY01748.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis B2/94]
gi|261302756|gb|EEY06253.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis
M163/99/10]
gi|261742915|gb|EEY30841.1| flagellar biosynthetic protein FliP [Brucella suis bv. 3 str. 686]
gi|262764254|gb|EEZ10286.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 3 str.
Ether]
gi|263092694|gb|EEZ16903.1| flagellar transporter FliP [Brucella melitensis bv. 2 str. 63/9]
gi|326410341|gb|ADZ67405.1| flagellar biosynthesis protein FliP [Brucella melitensis M28]
gi|326553633|gb|ADZ88272.1| flagellar biosynthesis protein FliP [Brucella melitensis M5-90]
Length = 246
Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 126/242 (52%), Positives = 172/242 (71%), Gaps = 3/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+T ++ D + + S IV+ FG+ T+LSIAP LLIMVT F
Sbjct: 7 LGVILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFT 66
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT+
Sbjct: 67 RFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEA 126
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +++PF FM R+KDL LF D+A S R +D +++R+L+P+FMISELRR
Sbjct: 127 AFGEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRR 183
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++
Sbjct: 184 GFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIR 243
Query: 244 SF 245
SF
Sbjct: 244 SF 245
>gi|167040314|ref|YP_001663299.1| flagellar biosynthesis protein FliP [Thermoanaerobacter sp. X514]
gi|256750756|ref|ZP_05491641.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914398|ref|ZP_07131714.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X561]
gi|307724366|ref|YP_003904117.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X513]
gi|166854554|gb|ABY92963.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X514]
gi|256750339|gb|EEU63358.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889333|gb|EFK84479.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X561]
gi|307581427|gb|ADN54826.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X513]
Length = 221
Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 92/224 (41%), Positives = 148/224 (66%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+L D+++ S ++ + T+L++AP +LIM+T F R +IV S LR +G+ +
Sbjct: 2 NLGDLVSSVTAPSNMATSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLSFLRNALGLQQM 61
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN V+I LALF+T ++M+P I+P +IT+ A Q +P FM TR
Sbjct: 62 PPNQVLIGLALFLTLFIMAPIGQDINNNAIKPYTEGKITQEEAYQNTIKPLKNFMLKQTR 121
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+ DL+LF+ +A + I + + R++IP+F+ISEL+ +F+IGF++ +PFLIID++
Sbjct: 122 QNDLNLFVSLAKIN-----INNVEELPMRVVIPAFIISELKTAFQIGFILYIPFLIIDIV 176
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++M+MGM MLPP ISLPFKV+ F+L+DGW+L+V++L+ F
Sbjct: 177 VASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220
>gi|108563093|ref|YP_627409.1| flagellar biosynthesis protein FliP [Helicobacter pylori HPAG1]
gi|107836866|gb|ABF84735.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1]
gi|261839493|gb|ACX99258.1| flagellar biosynthesis protein FliP [Helicobacter pylori 52]
gi|308062010|gb|ADO03898.1| flagellar biosynthesis protein FliP [Helicobacter pylori Cuz20]
gi|317009302|gb|ADU79882.1| flagellar biosynthesis protein FliP [Helicobacter pylori India7]
gi|317012496|gb|ADU83104.1| flagellar biosynthesis protein FliP [Helicobacter pylori
Lithuania75]
gi|317177503|dbj|BAJ55292.1| flagellar biosynthesis protein FliP [Helicobacter pylori F16]
gi|317178956|dbj|BAJ56744.1| flagellar biosynthesis protein FliP [Helicobacter pylori F30]
gi|317181997|dbj|BAJ59781.1| flagellar biosynthesis protein FliP [Helicobacter pylori F57]
Length = 248
Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 106/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P D + + T+L +AP L++++T
Sbjct: 6 FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 66 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 126 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 241
Query: 242 VKSF 245
V SF
Sbjct: 242 VASF 245
>gi|77457776|ref|YP_347281.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens Pf0-1]
gi|77381779|gb|ABA73292.1| flagellar biosynthesis protein [Pseudomonas fluorescens Pf0-1]
Length = 252
Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 135/224 (60%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ I T LS P +I++T F R IIVFSILR +G+
Sbjct: 28 PAITLGTNAEGAQEYSVSLQILLIMTALSFIPAAVILMTSFTRIIIVFSILRQALGLQQT 87
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N ++ +ALF+T ++M+P DR +QP + ++T A+++ P FM TR
Sbjct: 88 PSNQILTGMALFLTLFIMAPVFDRVNNDALQPYLAEKLTAQQAVEKAQVPIKDFMLAQTR 147
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL LF+ ++ TDI D IL+P+F+ SEL+ +F+IGF+I +PFLIID++
Sbjct: 148 SSDLELFVRLSKR----TDIATPDAAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLV 203
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 204 VASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLASSF 247
>gi|149193956|ref|ZP_01871054.1| flagellar biosynthesis protein P [Caminibacter mediatlanticus TB-2]
gi|149135909|gb|EDM24387.1| flagellar biosynthesis protein P [Caminibacter mediatlanticus TB-2]
Length = 243
Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 101/246 (41%), Positives = 151/246 (61%), Gaps = 5/246 (2%)
Query: 1 MIRYCFFALFLVTPELVFAK-SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
M + F LF + +++ + P + ++ + TIL +AP ++++
Sbjct: 1 MKKILIFFLFCTVIFAATPQIPTVNLSLTAPENPKQLVTVLNIAILMTILVLAPSIVLVA 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R ++VF LR +G PP +++SL+L +TF++M P + + GI+P M +I
Sbjct: 61 TSFVRLLVVFGFLRQALGTPQSPPTTLLVSLSLVLTFFIMEPYAKEAYKSGIKPYMEQKI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
A R +PF FM NTREKDL+LF + H + T D + IL+P+FMIS
Sbjct: 121 GYEEAFNRAVKPFKRFMIKNTREKDLALFFRIRHLPNPKT----IDDVPLSILVPAFMIS 176
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +FEIGFLI LPFLIIDM+V++I+M++GMMMLPP ISLPFK++ F+L+DGW+L+V
Sbjct: 177 ELKTAFEIGFLIFLPFLIIDMVVSSILMSLGMMMLPPVMISLPFKILVFILVDGWNLIVM 236
Query: 240 NLVKSF 245
LV SF
Sbjct: 237 GLVNSF 242
>gi|229591840|ref|YP_002873959.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens SBW25]
gi|229363706|emb|CAY51090.1| flagellar biosynthesis [Pseudomonas fluorescens SBW25]
Length = 247
Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 91/224 (40%), Positives = 137/224 (61%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ A + ++ I T LS P ++++T F R IIVFSILR +G+
Sbjct: 25 PAITLGTNAAGAQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQT 84
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N ++ +ALF+T ++M+P D+ + +QP + ++T AI + P FM + TR
Sbjct: 85 PSNQILTGMALFLTLFIMAPVFDKVNQQALQPYLAEKMTAQDAIDKAQGPIKDFMLSQTR 144
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL LFM ++ TDI D IL+P+F+ SEL+ +F+IGF+I +PFLIID++
Sbjct: 145 SSDLELFMRLSKR----TDIATPDQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLV 200
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 201 VASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLASSF 244
>gi|125973002|ref|YP_001036912.1| flagellar biosynthesis protein FliP [Clostridium thermocellum ATCC
27405]
gi|256004799|ref|ZP_05429774.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM
2360]
gi|281417213|ref|ZP_06248233.1| flagellar biosynthetic protein FliP [Clostridium thermocellum JW20]
gi|125713227|gb|ABN51719.1| flagellar biosynthetic protein FliP [Clostridium thermocellum ATCC
27405]
gi|255991249|gb|EEU01356.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM
2360]
gi|281408615|gb|EFB38873.1| flagellar biosynthetic protein FliP [Clostridium thermocellum JW20]
gi|316940762|gb|ADU74796.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM
1313]
Length = 260
Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 90/246 (36%), Positives = 143/246 (58%), Gaps = 1/246 (0%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+ + + A L + + + ++ + TILS+AP +LIM+T
Sbjct: 15 ITVFMLITSNVYAEPDSIALPKLGFTVEPSDNPQDVSTTIQIIVLLTILSLAPSILIMMT 74
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV S R +G +PPN V+I LALF+T ++M P L E +P N +IT
Sbjct: 75 SFVRIIIVLSFFRNAIGTQQMPPNQVLIGLALFLTLFIMRPVLTEINETAFKPYTNQEIT 134
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A++R ++ FM T + DL LF+ ++ + + I+IP+F+ISE
Sbjct: 135 QEVALERSSDIIKRFMLKQTSKNDLGLFVSLSGMETPIKEEDIP-KLPLTIVIPAFIISE 193
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L +F+IGFLI +PFL+IDM+V++ +M+MGMMMLPP ISLPFK++ F+++ GW+L+ +
Sbjct: 194 LTIAFKIGFLIYIPFLVIDMVVSSTLMSMGMMMLPPVMISLPFKILLFIMVGGWNLMTQM 253
Query: 241 LVKSFI 246
+V SF+
Sbjct: 254 IVNSFV 259
>gi|308048762|ref|YP_003912328.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799]
gi|307630952|gb|ADN75254.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799]
Length = 251
Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 89/234 (38%), Positives = 146/234 (62%), Gaps = 6/234 (2%)
Query: 14 PELVFAKSSLHD--VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
P L A + + P + ++ G+ T+L+ P ++I++T F R I+V +I
Sbjct: 17 PSLALADPGIPAITLTTGPDGTQQYSVSLQILGLMTLLTFLPAMVILMTSFTRIIVVLAI 76
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LR +G+ P N V++ +ALF++ ++M+P LDR E + P M QI A++R P
Sbjct: 77 LRQALGLQQTPSNQVLLGMALFLSLFIMTPVLDRVYEDALVPYMGEQIGALEAMERAKAP 136
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
FM + TR D++ F++++ TDI D + +LIP+F+ SEL+ +F+IGF++
Sbjct: 137 VKDFMLSQTRITDINTFVEISGR----TDIASVDEVPMTVLIPAFVTSELKTAFQIGFML 192
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFL+ID++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 193 FVPFLVIDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWNLVMGTLATSF 246
>gi|188527470|ref|YP_001910157.1| flagellar biosynthesis protein FliP [Helicobacter pylori Shi470]
gi|188143710|gb|ACD48127.1| flagellar biosynthesis protein FliP [Helicobacter pylori Shi470]
Length = 248
Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 106/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P D + + T+L +AP L++++T
Sbjct: 6 FLNLICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 66 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 126 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 241
Query: 242 VKSF 245
V SF
Sbjct: 242 VASF 245
>gi|152965632|ref|YP_001361416.1| flagellar biosynthesis protein FliP [Kineococcus radiotolerans
SRS30216]
gi|151360149|gb|ABS03152.1| flagellar biosynthetic protein FliP [Kineococcus radiotolerans
SRS30216]
Length = 287
Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 84/220 (38%), Positives = 132/220 (60%), Gaps = 4/220 (1%)
Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
++I + + TILS+AP LL++ TCF + +IV + R +G+ PPN
Sbjct: 70 SLDINGVDGKPSQSITVIIALTILSVAPALLLLTTCFTKILIVLGLTRNALGLQGTPPNQ 129
Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
V+ LALF+T +VM+PT + +QP + + T T A ++P FM TR ++L
Sbjct: 130 VLAGLALFLTMFVMAPTFGAINDTAVQPYLKGEKTATVAFTDGSQPLKEFMLKQTRPEEL 189
Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
+L A T + L+P+F +SELR +F IGF+I +PFL+ID++V+
Sbjct: 190 ALMTKAAKRDLPAT----REETPLTTLVPAFALSELRSAFIIGFVIFIPFLVIDIVVSGA 245
Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+M++GMMMLPP ++SLPFK++ FV+IDGW L+++ LV S+
Sbjct: 246 LMSLGMMMLPPVTVSLPFKLLLFVMIDGWGLIIKALVSSY 285
>gi|289578418|ref|YP_003477045.1| flagellar biosynthetic protein FliP [Thermoanaerobacter italicus
Ab9]
gi|297544694|ref|YP_003676996.1| flagellar biosynthetic protein FliP [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289528131|gb|ADD02483.1| flagellar biosynthetic protein FliP [Thermoanaerobacter italicus
Ab9]
gi|296842469|gb|ADH60985.1| flagellar biosynthetic protein FliP [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 221
Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats.
Identities = 94/224 (41%), Positives = 148/224 (66%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+L D+ + S ++ + T+L++AP +LIM+T F R +IV S LR +G+ +
Sbjct: 2 NLGDLASSVTAPSNMATSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLSFLRNALGLQQM 61
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN V+I LALF+T ++M+P I+P +IT+ A Q +P FM TR
Sbjct: 62 PPNQVLIGLALFLTLFIMAPIGQDINNNAIKPYTEGKITQEEAYQNAIKPLKSFMLKQTR 121
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+ DL+LF+ +A + ++ + + R++IP+F+ISEL+ +FEIGF+I +PFLIID+I
Sbjct: 122 QNDLNLFVSLAKIN-----VSNVEDLPMRVVIPAFIISELKTAFEIGFIIYIPFLIIDII 176
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++M+MGM MLPP ISLPFKV+ F+L+DGW+L+V++L+ F
Sbjct: 177 VASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220
>gi|15611692|ref|NP_223343.1| flagellar biosynthesis protein FliP [Helicobacter pylori J99]
gi|4155178|gb|AAD06205.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 248
Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats.
Identities = 105/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P+D + + T+L +AP L++++T
Sbjct: 6 FLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 66 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 126 TEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDDVSLSVLIPAFMISEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 241
Query: 242 VKSF 245
V SF
Sbjct: 242 VASF 245
>gi|254779331|ref|YP_003057436.1| flagellar biosynthesis protein FliP [Helicobacter pylori B38]
gi|254001242|emb|CAX29217.1| Flagellar biosynthetic protein FliP [Helicobacter pylori B38]
Length = 248
Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats.
Identities = 106/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P D + + T+L +AP L++++T
Sbjct: 6 FFILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 66 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 126 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 241
Query: 242 VKSF 245
V SF
Sbjct: 242 VASF 245
>gi|120554901|ref|YP_959252.1| flagellar biosynthesis protein FliP [Marinobacter aquaeolei VT8]
gi|120324750|gb|ABM19065.1| flagellar biosynthetic protein FliP [Marinobacter aquaeolei VT8]
Length = 253
Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats.
Identities = 90/245 (36%), Positives = 147/245 (60%), Gaps = 8/245 (3%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+ L P L A + ++ + T L+ P +L+M+T
Sbjct: 12 WLALIAGLCLPALAQADLPGIPAFTVEPGENGTEEYSVTLQILALMTALTFLPAMLMMMT 71
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R I+VF+ILR +G+ + P N +++ LALF++ ++M P L+ + +G+QP + ++T
Sbjct: 72 SFTRIIVVFAILRQALGLQATPSNQILLGLALFLSIFIMKPVLEEANRVGLQPYLQEEVT 131
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A++ ++PF FM TRE DL+LFM +A + + + IL+P+F+ SE
Sbjct: 132 SLEAVELASQPFRKFMLEQTREDDLALFMRIA-----DVQYETPQDVSFWILMPAFVTSE 186
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++
Sbjct: 187 LKTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALIMGT 246
Query: 241 LVKSF 245
L S+
Sbjct: 247 LAASY 251
>gi|315586640|gb|ADU41021.1| flagellar biosynthetic protein FliP [Helicobacter pylori 35A]
Length = 248
Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats.
Identities = 107/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P D + + T+L +AP L++++T
Sbjct: 6 FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 66 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 126 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFKV+ F+L+DG++LL ENL
Sbjct: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKVLVFILVDGFNLLTENL 241
Query: 242 VKSF 245
V SF
Sbjct: 242 VASF 245
>gi|308063526|gb|ADO05413.1| flagellar biosynthesis protein FliP [Helicobacter pylori Sat464]
Length = 248
Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats.
Identities = 106/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P D + + T+L +AP L++++T
Sbjct: 6 FLTLICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 66 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 126 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 241
Query: 242 VKSF 245
V SF
Sbjct: 242 VASF 245
>gi|83944189|ref|ZP_00956645.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36]
gi|83955110|ref|ZP_00963766.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1]
gi|83840439|gb|EAP79612.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1]
gi|83845056|gb|EAP82937.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36]
Length = 274
Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats.
Identities = 117/255 (45%), Positives = 167/255 (65%), Gaps = 14/255 (5%)
Query: 5 CFFALFLVTPELVFAKSSLHDVM-------------NIPADLSISTWIVRTFGIFTILSI 51
A + + +A+ + M S+S +++ F I T+LS+
Sbjct: 19 LVLAGVVASASTGWAQEADLGSMVRDLSSAFGDVTPGTDEGASLSGRLIQLFAIITVLSV 78
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
AP LL+MVT F RF+IVFS+LR +G+ PPN+V+ ++ALFMTF+VM P + + E G+
Sbjct: 79 APGLLVMVTSFTRFVIVFSMLRLALGLNQTPPNIVLNAMALFMTFFVMQPVFEDAWEGGL 138
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
PLM N I E A++ ++EPF+ FM NTR+KDL LF D+A + +D +R+
Sbjct: 139 VPLMENAIIEEQAVRNISEPFYNFMLVNTRDKDLQLFTDIADEASPPSDGPAALP-SWRV 197
Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
L+PSFMISELRR+F IGFLI LPF+ ID+IVA+++M+ GMMMLPP +SLPFKVIFFVLI
Sbjct: 198 LVPSFMISELRRAFTIGFLIYLPFIAIDLIVASVLMSAGMMMLPPVLVSLPFKVIFFVLI 257
Query: 232 DGWSLLVENLVKSFI 246
DGW +L +L++S++
Sbjct: 258 DGWYMLAGSLIQSYV 272
>gi|153831725|ref|ZP_01984392.1| flagellar biosynthetic protein FliP [Vibrio harveyi HY01]
gi|148872235|gb|EDL71052.1| flagellar biosynthetic protein FliP [Vibrio harveyi HY01]
Length = 259
Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats.
Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M+ L P + ++ + ++ + T LS P ++M T
Sbjct: 18 MVIALLGLLLFALPTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMAT 77
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R I+V +ILR +G+ PPN V++ +AL +T +M P + +P N +IT
Sbjct: 78 SFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWTDIHDNAFKPYDNGEIT 137
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A +P FM T + L + +A+ + I + +++P+F+ISE
Sbjct: 138 LMQAFSVAEKPVRNFMLAQTHQSSLEQMLRIANEP----IDQNVEDISFAVVLPAFVISE 193
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V
Sbjct: 194 LKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGT 253
Query: 241 LVKSF 245
L SF
Sbjct: 254 LSASF 258
>gi|323700135|ref|ZP_08112047.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. ND132]
gi|323460067|gb|EGB15932.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans
ND132]
Length = 252
Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats.
Identities = 97/215 (45%), Positives = 135/215 (62%), Gaps = 4/215 (1%)
Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
AD + ++ + TILSIAP +L+ +T F R IIVF +R MG +PPN ++ +L
Sbjct: 41 ADPQEVSTLLEILFLLTILSIAPAILLTMTSFTRIIIVFHFIRQAMGTQQMPPNQILAAL 100
Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
A+FMT +M P E +QP MN I T A+ R P FM +TREKDLS+F
Sbjct: 101 AIFMTMVIMYPVGKTINETALQPYMNETINFTEALTRAQVPIRQFMFKHTREKDLSIFYS 160
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
+ + + +L+ ++ ISEL+ F IGFLI +PFLI+DM+VA+I++AMG
Sbjct: 161 ITKEPRP----ENKEEVPTIMLVAAYTISELKTGFTIGFLIYIPFLILDMVVASILLAMG 216
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MMMLPP ISLPFK++ F+LIDGW+LLV +LV +F
Sbjct: 217 MMMLPPVMISLPFKILLFILIDGWNLLVGSLVNTF 251
>gi|152979946|ref|YP_001353121.1| flagellar biosynthesis protein FliP [Janthinobacterium sp.
Marseille]
gi|151280023|gb|ABR88433.1| Flip component of flagellar biosynthesis pathway [Janthinobacterium
sp. Marseille]
Length = 252
Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats.
Identities = 94/233 (40%), Positives = 141/233 (60%), Gaps = 7/233 (3%)
Query: 16 LVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
A+ + P + ++T + T LS P +L+M+T F R IIV S+L
Sbjct: 23 AAMAQQAGLPAFTSSPAPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSLL 82
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R +G S PPN VII L+LF+T +VMSP LD+ QP N+I A+ + P
Sbjct: 83 RQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSQNKIQMQEALDKAVAPL 142
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
FM TRE DL+L++ ++ ++ + I RIL+P+F+ SEL+ +F+I F I
Sbjct: 143 KTFMIKQTRESDLALYVKLSKGP----ELQGPEDIPLRILVPAFVTSELKTAFQISFAIF 198
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 IPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSF 251
>gi|62317108|ref|YP_222961.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 1 str.
9-941]
gi|83269100|ref|YP_418391.1| flagellar biosynthesis protein FliP [Brucella melitensis biovar
Abortus 2308]
gi|189022373|ref|YP_001932114.1| flagellar biosynthesis protein FliP [Brucella abortus S19]
gi|237816670|ref|ZP_04595662.1| flagellar biosynthetic protein FliP [Brucella abortus str. 2308 A]
gi|254691406|ref|ZP_05154660.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 6 str.
870]
gi|254698391|ref|ZP_05160219.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 2 str.
86/8/59]
gi|254731838|ref|ZP_05190416.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 4 str.
292]
gi|256256592|ref|ZP_05462128.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 9 str.
C68]
gi|260544347|ref|ZP_05820168.1| flagellar transporter FliP [Brucella abortus NCTC 8038]
gi|260757020|ref|ZP_05869368.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 6 str.
870]
gi|260759608|ref|ZP_05871956.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 4 str.
292]
gi|260762850|ref|ZP_05875182.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 2 str.
86/8/59]
gi|260882830|ref|ZP_05894444.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 9 str.
C68]
gi|297249948|ref|ZP_06933649.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 5 str.
B3196]
gi|62197301|gb|AAX75600.1| FliP, flagellar biosynthetic protein [Brucella abortus bv. 1 str.
9-941]
gi|82939374|emb|CAJ12324.1| Flagellar transport protein FliP:Type III secretion system inner
membrane P protein [Brucella melitensis biovar Abortus
2308]
gi|189020947|gb|ACD73668.1| Flagellar transport protein FliP [Brucella abortus S19]
gi|237787483|gb|EEP61699.1| flagellar biosynthetic protein FliP [Brucella abortus str. 2308 A]
gi|260097618|gb|EEW81492.1| flagellar transporter FliP [Brucella abortus NCTC 8038]
gi|260669926|gb|EEX56866.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 4 str.
292]
gi|260673271|gb|EEX60092.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 2 str.
86/8/59]
gi|260677128|gb|EEX63949.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 6 str.
870]
gi|260872358|gb|EEX79427.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 9 str.
C68]
gi|297173817|gb|EFH33181.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 5 str.
B3196]
Length = 246
Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats.
Identities = 126/242 (52%), Positives = 172/242 (71%), Gaps = 3/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+T ++ D + + S IV+ FG+ T+LSIAP LLIMVT F
Sbjct: 7 LGVILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFT 66
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT+
Sbjct: 67 RFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEA 126
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +++PF FM R+KDL LF D+A S R +D +++R+L+P+FMISELRR
Sbjct: 127 AFGEISQPFREFMMAQVRDKDLCLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRR 183
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++
Sbjct: 184 GFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIR 243
Query: 244 SF 245
SF
Sbjct: 244 SF 245
>gi|311030115|ref|ZP_07708205.1| flagellar biosynthesis protein FliP [Bacillus sp. m3-13]
Length = 221
Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats.
Identities = 97/217 (44%), Positives = 148/217 (68%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ S + V+ + T+ S+AP +LI++T F R IIV S +RT + S+PPN V+I
Sbjct: 9 SGNEASTVSTSVQLLLLLTVFSLAPAILILMTSFTRIIIVLSFVRTSLATQSMPPNQVLI 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF++M+PT + + +QPL N +IT A ++ + P FM +TR+KDL+LF
Sbjct: 69 GLALFLTFFIMAPTFSQVNDQALQPLFNEEITLDEAYEKASIPLKEFMSKHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+D A + I +L+P+F ISEL+ +F+IGF+I +PFL+IDM+VA+++M+
Sbjct: 129 IDYAGMERP----ESIEDIPLTVLVPAFAISELKTAFQIGFMIFIPFLVIDMVVASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+V++L+ +F
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLLTF 221
>gi|317010902|gb|ADU84649.1| flagellar biosynthesis protein FliP [Helicobacter pylori
SouthAfrica7]
Length = 248
Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats.
Identities = 108/244 (44%), Positives = 162/244 (66%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I + FAL A S++ +N P D + + T+L +AP L++++T
Sbjct: 6 IIFLIFALIGPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 66 FIRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 126 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDDVSLSVLIPAFMISEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 241
Query: 242 VKSF 245
V SF
Sbjct: 242 VASF 245
>gi|218133679|ref|ZP_03462483.1| hypothetical protein BACPEC_01548 [Bacteroides pectinophilus ATCC
43243]
gi|217991054|gb|EEC57060.1| hypothetical protein BACPEC_01548 [Bacteroides pectinophilus ATCC
43243]
Length = 278
Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats.
Identities = 94/223 (42%), Positives = 148/223 (66%), Gaps = 2/223 (0%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
L + D S +++ + TI+S+AP +L+++T F R +IV R +G+ ++P
Sbjct: 57 LINFSVAAGDGSDMASVLQMLLVLTIISLAPSILMLLTSFTRIVIVLHFTRAALGVQTIP 116
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN V+I L++F+TF+VMSPT + + I+PL NN+IT A +P FM
Sbjct: 117 PNQVLIGLSIFLTFFVMSPTFTQVYDSAIKPLSNNEITTEQAFDAGIKPMRAFMLKQVST 176
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
KDL F+++A + I D I +LIP+F+ISELR +F IGFLI +PF++IDM+V
Sbjct: 177 KDLDTFLNIAGTE--AGSIENEDDIPLNVLIPAFIISELRIAFIIGFLIYIPFIVIDMVV 234
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++++M+MGMMMLPPT+IS+PFK++ FV+ DGW+L++ NL+++F
Sbjct: 235 SSVLMSMGMMMLPPTTISMPFKILLFVMADGWNLVIGNLMQTF 277
>gi|89098628|ref|ZP_01171510.1| flagellar biosynthesis protein P [Bacillus sp. NRRL B-14911]
gi|89086590|gb|EAR65709.1| flagellar biosynthesis protein P [Bacillus sp. NRRL B-14911]
Length = 221
Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats.
Identities = 94/217 (43%), Positives = 147/217 (67%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ + V+ + T+LS+AP +LI++TCF R IIV S +RT + +PPN V++
Sbjct: 9 NASSPDNVSTSVKMLLLLTVLSLAPSILILMTCFTRIIIVLSFVRTALATQQMPPNQVLV 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
L+LF+TF++M+PT E + PL N++I A ++ + PF FM +TR+KDL+LF
Sbjct: 69 GLSLFLTFFIMAPTFQEVNEQALTPLFNDEINLEQAYEKASVPFKDFMSAHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
++ + + I L+P+F ISE++ +F+IGF+I +PFL+IDMIVA+++M+
Sbjct: 129 LEYSGAETP----ESIQDIPLTALVPAFAISEIKTAFQIGFMIFIPFLVIDMIVASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLQSF 221
>gi|154174223|ref|YP_001408145.1| flagellar biosynthesis protein FliP [Campylobacter curvus 525.92]
gi|112802855|gb|EAU00199.1| flagellar biosynthetic protein FliP [Campylobacter curvus 525.92]
Length = 245
Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats.
Identities = 108/244 (44%), Positives = 154/244 (63%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVFAK--SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ ALF ++ +++ ++ P+ + TIL++AP L+ M+T
Sbjct: 5 FVLAALFCISFGAPVDPVVPTINLSLSAPSSPQQLVNSLNVLIFLTILTLAPSLVFMMTS 64
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIVFS LR MG VPP+ VIISLA+ +TF++M P +S + G++P + QI
Sbjct: 65 FLRLIIVFSFLRQAMGTQQVPPSTVIISLAMVLTFFIMEPIGRQSYDEGVKPYLAEQIGY 124
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
+R +PF FM NTREKDL+LF + + + + D I I + +FMISEL
Sbjct: 125 EEMFERSVKPFKNFMVKNTREKDLALFFRIRNLQNP----SNIDDIPLSIAMSAFMISEL 180
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +FEI FL+ LPFL+IDM+V++++MAMGMMMLPP ISLPFK++ FVL+DGW+LLV NL
Sbjct: 181 KTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLVGNL 240
Query: 242 VKSF 245
VKSF
Sbjct: 241 VKSF 244
>gi|312962263|ref|ZP_07776755.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens WH6]
gi|311283600|gb|EFQ62189.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens WH6]
Length = 247
Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats.
Identities = 96/248 (38%), Positives = 144/248 (58%), Gaps = 7/248 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA---DLSISTWIVRTFGIFTILSIAPILLI 57
M L+L TP A + + + ++ I T LS P ++
Sbjct: 1 MRVLLTLMLWLATPLAFGADPLSIPAITLGTNAAGAQEYSVSLQILLIMTALSFIPAFVM 60
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D+ + +QP +
Sbjct: 61 LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDKVNQQALQPYLAE 120
Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
++T AI + P FM + TR DL LFM ++ TDI D IL+P+F+
Sbjct: 121 KMTAQDAIDKAQGPIKDFMLSQTRSSDLELFMRLSKR----TDIASPDQAPLTILVPAFV 176
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
SEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+
Sbjct: 177 TSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 236
Query: 238 VENLVKSF 245
+ L SF
Sbjct: 237 IGTLASSF 244
>gi|260767960|ref|ZP_05876894.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
gi|260615990|gb|EEX41175.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
Length = 252
Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats.
Identities = 81/242 (33%), Positives = 130/242 (53%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ P L ++ + + ++ + T LS P ++M T F
Sbjct: 13 LALVLMLCAWPTLAADNGLTLFTVSDGSTQEEYSVKLQILLLMTALSFLPAFILMATSFT 72
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R I+V +ILR +G+ PPN V++ +AL ++ +M P E +P QIT
Sbjct: 73 RIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWSEVYEHAFKPYDQGQITLMQ 132
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +P FM T++ L + +A+ D I + +++P+F+ISEL+
Sbjct: 133 AFSVAEKPVRNFMLAQTQQSSLEQMLRIANEPLD----QNVDDISFAVVLPAFVISELKT 188
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V L
Sbjct: 189 AFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTLSA 248
Query: 244 SF 245
SF
Sbjct: 249 SF 250
>gi|162147465|ref|YP_001601926.1| flagellar biosynthesis protein FliP [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786042|emb|CAP55624.1| putative flagellar biosynthetic protein fliP [Gluconacetobacter
diazotrophicus PAl 5]
Length = 259
Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats.
Identities = 103/238 (43%), Positives = 155/238 (65%), Gaps = 4/238 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
A+ P L A+S D+ D ++ +V+ + TILS+AP LL+MVT F R I+
Sbjct: 24 AVLAGMPTLAHAQSLSLDLGKGMGDAGTTSRLVQLTALITILSLAPSLLVMVTAFTRIIV 83
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
V S+LR +G PPN V+I LALF+TF+VM P +S + GI P+M+ +++E +
Sbjct: 84 VLSLLRGAIGAQGAPPNTVLIGLALFLTFFVMQPVFQQSWDHGIVPMMDGRVSEMEGLTA 143
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
AEPF FM N R D++ F+ +A+ T +R+++P+FMI EL R FE+
Sbjct: 144 AAEPFRTFMLANARPADITTFLHLANVPPPATPAETP----WRVIMPAFMIGELSRGFEM 199
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GFL+ LPFL+ID++ ++++M++GMMMLPP +ISLPFK+IFFV++DGW ++ LV+SF
Sbjct: 200 GFLLYLPFLVIDIVTSSVLMSLGMMMLPPATISLPFKLIFFVMVDGWQMVAGGLVRSF 257
>gi|194014385|ref|ZP_03053002.1| flagellar biosynthetic protein FliP [Bacillus pumilus ATCC 7061]
gi|194013411|gb|EDW22976.1| flagellar biosynthetic protein FliP [Bacillus pumilus ATCC 7061]
Length = 221
Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats.
Identities = 95/217 (43%), Positives = 144/217 (66%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ + VR + T+ S+AP +LI++TCF R +IV S +RT + S+PPN V++
Sbjct: 9 NSSGAGNISTSVRLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATNSMPPNQVLV 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF++M+PT + + PL+N+ IT A ++ P FM +TR+KDL+LF
Sbjct: 69 GLALFLTFFIMAPTFSEINKEALTPLLNDDITLNQAYEKAEVPIKEFMSKHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+
Sbjct: 129 LSYAKIDTP----ESIKDIPLTAMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
>gi|323493116|ref|ZP_08098247.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546]
gi|323312587|gb|EGA65720.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546]
Length = 252
Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats.
Identities = 83/245 (33%), Positives = 134/245 (54%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + L L P ++ A + ++ + T LS P ++M T
Sbjct: 11 LVLFTASVLLLSFPSFASESGLTILSVSDGASEQEYSVKLQILLLMTALSFLPAFILMAT 70
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R I+V +ILR +G+ PPN V++ +AL ++ +M P QP N +IT
Sbjct: 71 SFTRIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWTDIYHNAFQPYDNGEIT 130
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A +P FM T++ L + +A+ T + I + +++P+F+ISE
Sbjct: 131 LMQAFSVAEKPVRNFMLAQTQQTSLEQMLRIANEPLD----TSVEDISFAVVLPAFVISE 186
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V
Sbjct: 187 LKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGT 246
Query: 241 LVKSF 245
L SF
Sbjct: 247 LSASF 251
>gi|156976196|ref|YP_001447102.1| flagellar biosynthesis protein FliP [Vibrio harveyi ATCC BAA-1116]
gi|156527790|gb|ABU72875.1| hypothetical protein VIBHAR_04967 [Vibrio harveyi ATCC BAA-1116]
Length = 255
Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats.
Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M+ L P + ++ + ++ + T LS P ++M T
Sbjct: 14 MVIALLGLLLFALPTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMAT 73
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R I+V +ILR +G+ PPN V++ +AL +T +M P + +P N +IT
Sbjct: 74 SFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWTDIHDNAFKPYDNGEIT 133
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A +P FM T + L + +A+ + I + +++P+F+ISE
Sbjct: 134 LMQAFSVAEKPVRNFMLAQTHQSSLEQMLRIANEP----IDQNVEDISFAVVLPAFVISE 189
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V
Sbjct: 190 LKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGT 249
Query: 241 LVKSF 245
L SF
Sbjct: 250 LSASF 254
>gi|109947417|ref|YP_664645.1| flagellar biosynthesis protein FliP [Helicobacter acinonychis str.
Sheeba]
gi|109714638|emb|CAJ99646.1| flagellar biosynthesis protein [Helicobacter acinonychis str.
Sheeba]
Length = 248
Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats.
Identities = 107/244 (43%), Positives = 161/244 (65%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I + FAL S++ +N P D + + T+L +AP L++++T
Sbjct: 6 IIFLIFALICPLMSTDNTLPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ ++GI+P M+ +I+
Sbjct: 66 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDIGIKPYMDKKISY 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + T D + +LIP+FMISEL
Sbjct: 126 TEAFEKSALPFKEFMLKNTREKDLALFFRIRQLPNPKT----PDDVSLSVLIPAFMISEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 241
Query: 242 VKSF 245
V SF
Sbjct: 242 VASF 245
>gi|294853182|ref|ZP_06793854.1| flagellar biosynthetic protein FliP [Brucella sp. NVSL 07-0026]
gi|294818837|gb|EFG35837.1| flagellar biosynthetic protein FliP [Brucella sp. NVSL 07-0026]
Length = 246
Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats.
Identities = 125/242 (51%), Positives = 171/242 (70%), Gaps = 3/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+T ++ D + + S IV+ FG+ T+LSIAP LLIMVT F
Sbjct: 7 LGVILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFT 66
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT+
Sbjct: 67 RFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEA 126
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +++PF FM R+KDL LF D+ S R +D +++R+L+P+FMISELRR
Sbjct: 127 AFGEISQPFREFMMAQVRDKDLRLFEDLVDPSFRTSDDGI---VDFRVLVPAFMISELRR 183
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++
Sbjct: 184 GFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIR 243
Query: 244 SF 245
SF
Sbjct: 244 SF 245
>gi|256029950|ref|ZP_05443564.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis
M292/94/1]
gi|265986969|ref|ZP_06099526.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis
M292/94/1]
gi|264659166|gb|EEZ29427.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis
M292/94/1]
Length = 246
Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats.
Identities = 126/242 (52%), Positives = 172/242 (71%), Gaps = 3/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+T ++ D + + S IV+ FG+ T+LSIAP LLIMVT F
Sbjct: 7 LGVILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFT 66
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT+
Sbjct: 67 RFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMPNEITQEA 126
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +++PF FM R+KDL LF D+A S R +D +++R+L+P+FMISELRR
Sbjct: 127 AFGEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRR 183
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++
Sbjct: 184 GFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIR 243
Query: 244 SF 245
SF
Sbjct: 244 SF 245
>gi|32490799|ref|NP_871053.1| flagellar biosynthesis protein FliP [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166005|dbj|BAC24196.1| fliP [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 263
Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats.
Identities = 92/245 (37%), Positives = 149/245 (60%), Gaps = 5/245 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPA-DLSISTWIVRTFGIFTILSIAPILLIMVT 60
I + P +++ D + + + + V+T T L+ P L+++++
Sbjct: 20 IFVILILILFYFPVYSVSETIPIDSQKLNSLEDIKLSLPVQTLLFLTSLTFIPALILLMS 79
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV SILR +G + PPN ++I L+L +T ++MSP L++ P N+I
Sbjct: 80 SFTRIIIVLSILRNALGTPTAPPNQILIGLSLCLTIFIMSPVLEKIYYDSYLPFYQNKIN 139
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
AI +P FM + TREKDL+ + ++ ++ +I + +ILIP+F+ SE
Sbjct: 140 LQKAIIYAEQPIKEFMISQTREKDLAFYSKISKTN----EINSPKEVPIKILIPAFVTSE 195
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF + +PFLIIDM+VA+I+MA+GMMMLPPT++SLPFK++ FV+ DGW +L+ +
Sbjct: 196 LKTAFQIGFTLFIPFLIIDMVVASILMALGMMMLPPTTVSLPFKLMLFVMADGWQILLGS 255
Query: 241 LVKSF 245
LV+SF
Sbjct: 256 LVQSF 260
>gi|260222420|emb|CBA31966.1| Flagellar biosynthetic protein fliP [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 218
Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats.
Identities = 92/221 (41%), Positives = 138/221 (62%), Gaps = 4/221 (1%)
Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
++ + ++T FT LS P +L+M+T F R +IV S+LR +G S PPN
Sbjct: 1 MVGTGESGVNFSVPIQTLLFFTALSFIPAVLLMMTGFTRIVIVLSLLRQALGTQSAPPNQ 60
Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
VI+ L+LF+TF+VM PT DR QP ++ A+Q+ P FM TR+ D
Sbjct: 61 VIVGLSLFLTFFVMGPTFDRIYADAYQPYSQGTMSFDQALQKAEVPIRNFMVKQTRQSDF 120
Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
SLF +A K D R+L+P+F+ISEL+ +F+IGF+I +PFL+ID++VA++
Sbjct: 121 SLFAKLAKLP----PDMKADTAPIRVLVPAFVISELKSAFQIGFMIFIPFLVIDIVVASV 176
Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF+
Sbjct: 177 LMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASFV 217
>gi|328958270|ref|YP_004375656.1| flagellar biosynthesis protein FliP [Carnobacterium sp. 17-4]
gi|328674594|gb|AEB30640.1| flagellar biosynthesis protein FliP [Carnobacterium sp. 17-4]
Length = 254
Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats.
Identities = 93/245 (37%), Positives = 149/245 (60%), Gaps = 8/245 (3%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNI----PADLSISTWIVRTFGIFTILSIAPILLIMVT 60
F L+ P++V A + + ++ ++ +V+ F + T LS+AP L++ T
Sbjct: 13 LFLMSSLLFPQVVTAAEITDGLSGLSEALGSETGETSQVVQLFLLTTALSLAPTFLVLTT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CF R I+V S +R+ +G PPNLV++ +ALF++ ++M P + I P +N +I+
Sbjct: 73 CFTRIIVVLSFVRSSLGTQQNPPNLVLMGIALFLSLFIMQPVYTDVMNEAITPYINEEIS 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A + P FM TR++D+ LF+D++ ++ + + IP+F+ISE
Sbjct: 133 GQAAFESAELPIKEFMYKQTRDEDIQLFLDISETAKP----ADVKELPLTVAIPAFIISE 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LR +F IGFLI +PFL+ID++VA+I+M+MGM ML P ISLPFK++ FVL+DGW L+VE+
Sbjct: 189 LRTAFSIGFLIFIPFLVIDIVVASILMSMGMFMLSPVMISLPFKLLLFVLVDGWYLVVES 248
Query: 241 LVKSF 245
LV F
Sbjct: 249 LVTGF 253
>gi|88858098|ref|ZP_01132740.1| flagellar biosynthesis [Pseudoalteromonas tunicata D2]
gi|88819715|gb|EAR29528.1| flagellar biosynthesis [Pseudoalteromonas tunicata D2]
Length = 247
Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats.
Identities = 87/247 (35%), Positives = 141/247 (57%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSL--HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
MI++ + A+ L V + ++ I T LS P +IM
Sbjct: 1 MIKWIILIALFTLSPSLSAEQGLQALTVTTNADGTQDYSVSLQVLAIMTALSFIPAAVIM 60
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R I+V +ILR +G+ S P N V++ +++FM+ ++M+P + E I P + +
Sbjct: 61 MTSFTRIIVVLAILRQAIGLQSTPSNQVLVGMSVFMSIFIMAPIYQQIHEAAIDPYLKEE 120
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+T A+++ +P FM TR DL F +A + K + + ++IP+F+
Sbjct: 121 LTSIQALEKAKDPLKTFMLRQTRISDLETFAQIAGLEK----LDKPEDAPFIVVIPAFIT 176
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F IGF+ +PFLI+D++VA+++MAMGMMML P +SLPFK++ FVL+DGWSL++
Sbjct: 177 SELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 236
Query: 239 ENLVKSF 245
L KSF
Sbjct: 237 GTLAKSF 243
>gi|306846272|ref|ZP_07478833.1| flagellar biosynthetic protein FliP [Brucella sp. BO1]
gi|306273267|gb|EFM55136.1| flagellar biosynthetic protein FliP [Brucella sp. BO1]
Length = 246
Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats.
Identities = 126/242 (52%), Positives = 171/242 (70%), Gaps = 3/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+T ++ D + + S IV+ FG+ T+LSIAP LLIMVT F
Sbjct: 7 LGVILTLALTVSAQAQQALTLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFT 66
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ + G+QPLM N+IT+
Sbjct: 67 RFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWDNGVQPLMRNEITQEA 126
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +++PF FM R KDL LF D+A S R D +++R+L+P+FMISELRR
Sbjct: 127 AFGEISQPFREFMMAQVRGKDLRLFEDLADPSFRTGDDGI---VDFRVLVPAFMISELRR 183
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++
Sbjct: 184 GFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIR 243
Query: 244 SF 245
SF
Sbjct: 244 SF 245
>gi|144900473|emb|CAM77337.1| Type III secretion system inner membrane P protein
[Magnetospirillum gryphiswaldense MSR-1]
Length = 253
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 103/242 (42%), Positives = 159/242 (65%), Gaps = 7/242 (2%)
Query: 7 FALFLVTPELVFAKS---SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
LV +A+ +L S + I++ + T+LS+AP +L+MVT F
Sbjct: 13 VLGVLVLSAPAWAQQFSLNLGAGGGGGNANSTTLRIIQLIALTTVLSVAPSILVMVTSFT 72
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R +IV LR +G PPN+V++SLA+F+T ++M+PTL++S G+QP + + E
Sbjct: 73 RIVIVLGFLRQALGTMQSPPNMVLVSLAMFLTAFIMAPTLEQSWNDGVQPYVEGSLEEAA 132
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A + +P FM + R++DL LF+D++ + D+ K + + LIP+FMISELRR
Sbjct: 133 AFEATVKPLQTFMLRHVRDQDLQLFLDLSRTP----DVAKAEDAPLKALIPAFMISELRR 188
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+FEIGFLI LPF++IDM++A+++M+MGMMM+PP +SLPFK+IFFVL+DGW ++V +LV+
Sbjct: 189 AFEIGFLIFLPFIVIDMVIASVLMSMGMMMIPPAMVSLPFKLIFFVLVDGWYMVVGSLVQ 248
Query: 244 SF 245
SF
Sbjct: 249 SF 250
>gi|188592196|ref|YP_001796794.1| flagellar biosynthesis protein flip [Cupriavidus taiwanensis LMG
19424]
gi|170938570|emb|CAP63557.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
[Cupriavidus taiwanensis LMG 19424]
Length = 274
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 96/218 (44%), Positives = 144/218 (66%), Gaps = 4/218 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
P I + V+T + T LS P ++M+T F R IIV +LR +G + PPN V++
Sbjct: 60 APGGGQIWSLPVQTLVLLTSLSFLPAAMLMMTGFTRVIIVLGLLRNALGTATSPPNQVLV 119
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
L+LF+TF+VM+P DR +PL N+++ A + AEP FM TREKDL++F
Sbjct: 120 GLSLFLTFFVMAPVFDRVYNDAYKPLSENKLSLEAAAAKAAEPLKAFMLRQTREKDLAMF 179
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
MA + ++ + + IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+++MA
Sbjct: 180 AQMAKAP----EMQGPEEVPLSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMA 235
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 236 MGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 273
>gi|152986552|ref|YP_001349235.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PA7]
gi|150961710|gb|ABR83735.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa PA7]
Length = 255
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 97/224 (43%), Positives = 139/224 (62%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
S V + ++ I T LS P ++++T F R IIVFSILR +G+ S
Sbjct: 33 SAITVTTNGQGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQST 92
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N V++ LALF+T +VM+P DR +QP +N QI A+QR P FM TR
Sbjct: 93 PSNQVLVGLALFLTMFVMAPVFDRINSQALQPYLNEQIPAQEALQRAEVPLKAFMLAQTR 152
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL LF+ ++ TDI+ + IL+P+F+ SEL+ +F+IGF+I +PFLIID++
Sbjct: 153 TSDLELFVRLSKR----TDISGPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLV 208
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
V++++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 209 VSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 252
>gi|138894755|ref|YP_001125208.1| flagellar biosynthesis protein FliP [Geobacillus
thermodenitrificans NG80-2]
gi|196247623|ref|ZP_03146325.1| flagellar biosynthetic protein FliP [Geobacillus sp. G11MC16]
gi|134266268|gb|ABO66463.1| Flagellar protein [Geobacillus thermodenitrificans NG80-2]
gi|196212407|gb|EDY07164.1| flagellar biosynthetic protein FliP [Geobacillus sp. G11MC16]
Length = 222
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 94/195 (48%), Positives = 138/195 (70%), Gaps = 4/195 (2%)
Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
IAP +LIM+TCF R +IV S +RT +G +PPN V+I LALF+TF++M+PT +
Sbjct: 31 IAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQVLIGLALFLTFFIMAPTWKDINDQA 90
Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170
+QPL +I A +R A P FM +TR++DL+LF+ + + T + I
Sbjct: 91 LQPLFAEKIDLDEAYERAAIPLKQFMSKHTRQQDLALFLSYSGAEQPKT----VNDIPLT 146
Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP ISLPFK++ FVL
Sbjct: 147 ALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVL 206
Query: 231 IDGWSLLVENLVKSF 245
+DGW L+V++L++SF
Sbjct: 207 VDGWYLVVKSLLQSF 221
>gi|153213266|ref|ZP_01948678.1| flagellar biosynthetic protein FliP [Vibrio cholerae 1587]
gi|124116066|gb|EAY34886.1| flagellar biosynthetic protein FliP [Vibrio cholerae 1587]
Length = 287
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 89/224 (39%), Positives = 137/224 (61%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 67 PAFTMTTNSDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 126
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +ALF+TF++M+P ++ E +QP +N QIT A EP FM TR
Sbjct: 127 PSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTR 186
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 187 VNDLETFVEMSG-----AQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 241
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 242 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 285
>gi|308182827|ref|YP_003926954.1| flagellar biosynthesis protein FliP [Helicobacter pylori PeCan4]
gi|308065012|gb|ADO06904.1| flagellar biosynthesis protein FliP [Helicobacter pylori PeCan4]
Length = 248
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 106/244 (43%), Positives = 163/244 (66%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P+D + + T+L +AP L++++T
Sbjct: 6 FLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 66 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 126 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 241
Query: 242 VKSF 245
V SF
Sbjct: 242 VASF 245
>gi|331006679|ref|ZP_08329957.1| Flagellar biosynthesis protein fliP [gamma proteobacterium
IMCC1989]
gi|330419511|gb|EGG93899.1| Flagellar biosynthesis protein fliP [gamma proteobacterium
IMCC1989]
Length = 280
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 95/235 (40%), Positives = 145/235 (61%), Gaps = 4/235 (1%)
Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
+ + F S + + ++ + T L+ P +LIM+T F R IIVF+
Sbjct: 48 VSSTLSSFPSLSAITLTTNEDGTQEYSVSIQVLLLMTTLTFIPAILIMMTSFTRIIIVFA 107
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
ILR +G+ P N ++I + LF+T ++M+P ++ E +QP + QIT AI +V E
Sbjct: 108 ILRQALGLQQSPSNQILIGMTLFLTLFIMTPVINEVNEQALQPYIAEQITSDQAIDKVIE 167
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
PF FM TRE DL LFMD+A+ + + + +LIPSF+ SEL+ +F+IGF+
Sbjct: 168 PFHRFMIGQTRESDLKLFMDIANVP----AVDTREEVPLTVLIPSFITSELKTAFQIGFI 223
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ +PFL+ID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++L+ L SF
Sbjct: 224 LFIPFLVIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWAMLMGTLAASF 278
>gi|260779323|ref|ZP_05888215.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC
BAA-450]
gi|260605487|gb|EEX31782.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC
BAA-450]
Length = 252
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 83/244 (34%), Positives = 134/244 (54%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I +L P + ++ A + ++ + T LS P ++M T
Sbjct: 12 ILIGLVSLLFAFPSVANESGLTILSVSDGATQQEYSVKLQILLLMTALSFLPAFILMATS 71
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+V +ILR +G+ PPN V++ +AL ++ +M P + QP N +IT
Sbjct: 72 FTRIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWTDIYQNAFQPYDNGEITL 131
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A +P FM T++ L + +A+ T + I + +++P+F+ISEL
Sbjct: 132 MQAFSVAEKPVRNFMLAQTQQTSLEQMLRIANEPLD----TALEDISFAVVLPAFVISEL 187
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V L
Sbjct: 188 KTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTL 247
Query: 242 VKSF 245
SF
Sbjct: 248 SASF 251
>gi|229918642|ref|YP_002887288.1| flagellar biosynthetic protein FliP [Exiguobacterium sp. AT1b]
gi|229470071|gb|ACQ71843.1| flagellar biosynthetic protein FliP [Exiguobacterium sp. AT1b]
Length = 221
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 88/214 (41%), Positives = 140/214 (65%), Gaps = 4/214 (1%)
Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
++ ++ + T+L++AP LI++TCF R ++V S +R +G PPN +I+ L
Sbjct: 11 ETPDSTSTSIKLLILLTLLTLAPSFLILMTCFTRVVVVLSFIRPALGTQQTPPNQLIVGL 70
Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
ALF+T +VMSP L E ++P ++++I++ A + FM TR++DL LF+
Sbjct: 71 ALFITLFVMSPVLSDLNENALKPYLDDKISQDEAFDEASGTMKEFMSKYTRQEDLQLFLK 130
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
+ T D + L+P++ ISEL+ +F+IGF+I LPFLIIDM+VA+++M+MG
Sbjct: 131 YGNYEQPET----LDDVPLLALVPAYAISELKTAFQIGFMIFLPFLIIDMVVASVLMSMG 186
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
MMMLPP I+LPFK++ FVL+DGW L+VE+L++S
Sbjct: 187 MMMLPPVMIALPFKLLLFVLVDGWHLIVESLLRS 220
>gi|15596643|ref|NP_250137.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PAO1]
gi|107100880|ref|ZP_01364798.1| hypothetical protein PaerPA_01001910 [Pseudomonas aeruginosa PACS2]
gi|116049391|ref|YP_791806.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218892681|ref|YP_002441550.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa LESB58]
gi|254234545|ref|ZP_04927868.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa C3719]
gi|254239796|ref|ZP_04933118.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 2192]
gi|296390187|ref|ZP_06879662.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PAb1]
gi|313106445|ref|ZP_07792676.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 39016]
gi|12230927|sp|Q51468|FLIP_PSEAE RecName: Full=Flagellar biosynthetic protein fliP
gi|9947397|gb|AAG04835.1|AE004574_6 flagellar biosynthetic protein FliP [Pseudomonas aeruginosa PAO1]
gi|115584612|gb|ABJ10627.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126166476|gb|EAZ51987.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa C3719]
gi|126193174|gb|EAZ57237.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 2192]
gi|218772909|emb|CAW28721.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa LESB58]
gi|310879178|gb|EFQ37772.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 39016]
Length = 255
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 95/224 (42%), Positives = 138/224 (61%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
S V + ++ I T LS P ++++T F R IIVFSILR +G+ S
Sbjct: 33 SAITVTTNGQGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQST 92
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N V++ LALF+T +VM+P D+ +QP +N QI A+Q+ P FM TR
Sbjct: 93 PSNQVLVGLALFLTMFVMAPVFDKINSQALQPYLNEQIPAQEALQKAEVPLKAFMLAQTR 152
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL LF+ ++ TDI + IL+P+F+ SEL+ +F+IGF+I +PFLIID++
Sbjct: 153 TSDLELFVRLSKR----TDIGSPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLV 208
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
V++++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 209 VSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 252
>gi|126665005|ref|ZP_01735988.1| flagellar biosynthetic protein FliP [Marinobacter sp. ELB17]
gi|126630375|gb|EBA00990.1| flagellar biosynthetic protein FliP [Marinobacter sp. ELB17]
Length = 259
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 94/244 (38%), Positives = 147/244 (60%), Gaps = 8/244 (3%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSI---STWIVRTFGIFTILSIAPILLIMVTC 61
A + P + P + ++ + T L+ P +L+M+T
Sbjct: 19 IVIAAMVWAPLAQADLPGIPAFTVEPGAGEGQQEYSVTLQILALMTALTFLPAMLMMMTS 78
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIVFSILR +G+ S P N +++ LALF+T ++M P L+ + +G+QP + ++T
Sbjct: 79 FTRIIIVFSILRQALGLQSAPSNQILLGLALFLTIFIMKPVLEEANRVGLQPYLQEELTS 138
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A++ +EPF FM TRE DL LFM MA + + + + +L+P+F+ SEL
Sbjct: 139 LEAVEAASEPFKQFMLAQTRESDLGLFMRMA-----DEQFASPEDVTFWVLLPAFVTSEL 193
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L
Sbjct: 194 KTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALIMGTL 253
Query: 242 VKSF 245
S+
Sbjct: 254 AASY 257
>gi|27381978|ref|NP_773507.1| flagellar biosynthesis protein FliP [Bradyrhizobium japonicum USDA
110]
gi|27355148|dbj|BAC52132.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110]
Length = 246
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 127/232 (54%), Positives = 170/232 (73%), Gaps = 2/232 (0%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
PE+ FA+ + + P + S S I++ + T+LS+AP LLIMVT F RF + S LR
Sbjct: 16 PEMAFAQIPDLNSLLPPGNGSTSGRIIQLMALITVLSVAPGLLIMVTSFTRFAVALSFLR 75
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+G+G+ + P NLV++SLALFMTFYVM+PT DR+ E G+QPLM N+I+E A ++ +PF
Sbjct: 76 SGLGLQTTPANLVLVSLALFMTFYVMAPTFDRAWETGVQPLMKNEISEEEAYLKITDPFR 135
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM + R+KDL F +A S R K I+ R++IP+FMISELRRSFEIGFLI+L
Sbjct: 136 EFMLAHVRDKDLQTFEALAAESFRKKFDDK--RIDLRVIIPAFMISELRRSFEIGFLIML 193
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFL+IDMIVAT+ M+MGMMM+PPT ++LPFK++FFVLIDGW+LL LV+SF
Sbjct: 194 PFLVIDMIVATLTMSMGMMMMPPTILALPFKMLFFVLIDGWNLLASGLVRSF 245
>gi|157164339|ref|YP_001466589.1| flagellar biosynthesis protein FliP [Campylobacter concisus 13826]
gi|112800704|gb|EAT98048.1| flagellar biosynthetic protein FliP [Campylobacter concisus 13826]
Length = 243
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 108/242 (44%), Positives = 151/242 (62%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
LF V A +++ +N P + + I T L++AP L+ M+T F
Sbjct: 5 LSLAVLFCVVFGADPALPTINLSLNSPQNAEQLVNSLNVLLILTALALAPSLIFMMTSFL 64
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R +IVFS LR MG VPP+ V+ISLA+ +TF++M P RS + GI+P + QI
Sbjct: 65 RLVIVFSFLRQAMGTQQVPPSTVLISLAMVLTFFIMEPVGQRSYDEGIKPYIAEQIGYEE 124
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
+ + +PF FM NTREKDL+LF + + + + I I + +FMISEL+
Sbjct: 125 MLDKSLKPFKEFMVKNTREKDLALFFRIRNLQNP----ANIEDIPLSIAMSAFMISELKT 180
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
SFEI FL+ LPFL+IDM+V++++MAMGMMMLPP ISLPFK++ FVL+DGW+LL+ NLVK
Sbjct: 181 SFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLIGNLVK 240
Query: 244 SF 245
SF
Sbjct: 241 SF 242
>gi|294013059|ref|YP_003546519.1| flagellar biosynthetic protein FliP [Sphingobium japonicum UT26S]
gi|292676389|dbj|BAI97907.1| flagellar biosynthetic protein FliP [Sphingobium japonicum UT26S]
Length = 288
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 88/221 (39%), Positives = 137/221 (61%), Gaps = 4/221 (1%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
+ I D + ++ + ++L++ P L++M+T F R IIV S+LR +G+ PPN
Sbjct: 70 AMGQISGDGRSLSLSLQILILMSLLTVLPSLILMMTSFTRIIIVLSLLRQALGLQQTPPN 129
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
V++ L+LF++ +VM P +D+ P QI+ A+ R + FM TRE D
Sbjct: 130 QVLVGLSLFLSLFVMRPAIDQINGQAFDPYGKGQISIEEAVGRSGKVLHGFMTKQTRETD 189
Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
L LF ++A + I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+
Sbjct: 190 LKLFQNLAEAP----AFRTPADIPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVAS 245
Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+MA+GMMML PT IS+PFK++ FVL+DGW+L + +L SF
Sbjct: 246 TLMALGMMMLSPTIISMPFKLLLFVLVDGWALTMGSLAGSF 286
>gi|317180434|dbj|BAJ58220.1| flagellar biosynthesis protein FliP [Helicobacter pylori F32]
Length = 248
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 106/244 (43%), Positives = 161/244 (65%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P D + + T+L +AP L++++T
Sbjct: 6 FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ I+
Sbjct: 66 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKTISY 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 126 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 241
Query: 242 VKSF 245
V SF
Sbjct: 242 VASF 245
>gi|326204610|ref|ZP_08194466.1| flagellar biosynthetic protein FliP [Clostridium papyrosolvens DSM
2782]
gi|325985177|gb|EGD46017.1| flagellar biosynthetic protein FliP [Clostridium papyrosolvens DSM
2782]
Length = 243
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 5/238 (2%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
E + + + + + ++ T+LSIAP +LIM+T F R II+ S
Sbjct: 5 ALAEPTVSVTKDGVNIGASTNPKEVSSSIQLLIALTVLSIAPSILIMMTGFTRIIIILSF 64
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LR +G +PPN V+I LALF+T +VMSP L E QP N +IT+ AI + ++
Sbjct: 65 LRNALGTQQMPPNQVLIGLALFITLFVMSPVLSDINENAFQPYTNGKITQQQAIDKSSQS 124
Query: 132 FWVFMRNNT----REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
+M REKDL LFM + + + ++ P+F+ISEL +F+
Sbjct: 125 IKTWMVKQIFSNKREKDLELFMTLGGQKEP-VKVQDASKLSLTMVAPAFLISELTVAFKF 183
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GFLI LPFLIIDM+V++ +M+MGMMMLPP ISLPFK++ FVL+DGWS+L ++++ SF
Sbjct: 184 GFLIFLPFLIIDMVVSSALMSMGMMMLPPIMISLPFKILLFVLVDGWSMLTQSIITSF 241
>gi|288573013|ref|ZP_06391370.1| flagellar biosynthetic protein FliP [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568754|gb|EFC90311.1| flagellar biosynthetic protein FliP [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 256
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 86/253 (33%), Positives = 153/253 (60%), Gaps = 12/253 (4%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLH--------DVMNIPADLSISTWIVRTFGIFTILSIA 52
+ ++F ++ A+ + + + ++ + T+LS+A
Sbjct: 7 IAILISLSVFFLSCGGASAQPNQPELPVPALRIAVEGATSPQDVSTSLQIVALLTVLSVA 66
Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
P +L+MVT F R ++V +R +G+ PPN VI++LALF++ ++M+PT D G+
Sbjct: 67 PAILLMVTSFTRVLVVLGFVRNALGLQQTPPNQVIVTLALFLSLFIMAPTWDVMYSQGLS 126
Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
P M +I A++ V P FM + TRE++LSL + M+ + D I ++L
Sbjct: 127 PYMEGRIGSMEALENVTTPLRRFMLSQTREEELSLMVSMSGLERP----SSADDIPNKVL 182
Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
+P++M+SEL+ +F++G +I +PF+++DMI+++++M+MGM+MLPP ISLPFKV+ FV+ D
Sbjct: 183 LPAYMLSELKSAFQMGIVIYVPFIVVDMIISSVLMSMGMIMLPPMMISLPFKVLLFVMAD 242
Query: 233 GWSLLVENLVKSF 245
GW+L+V +L++SF
Sbjct: 243 GWNLVVVSLIRSF 255
>gi|242281272|ref|YP_002993401.1| flagellar biosynthesis protein FliP [Desulfovibrio salexigens DSM
2638]
gi|242124166|gb|ACS81862.1| flagellar biosynthetic protein FliP [Desulfovibrio salexigens DSM
2638]
Length = 252
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 93/245 (37%), Positives = 143/245 (58%), Gaps = 8/245 (3%)
Query: 5 CFFALFLVTPELVFAKSSLHDVM----NIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
L+ P FA+ ++ + + ++ + TIL +AP +L+ +T
Sbjct: 11 LSAIFLLLIPAAAFAQETVPTLTLNLAAGQEEPEQVAKLLEILFLLTILGMAPSILLTMT 70
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVF LR MG +PPN ++ SLA+FMT +M PT + +QP +N +I
Sbjct: 71 SFTRIIIVFHFLRQAMGTQQMPPNQILASLAIFMTVVIMMPTGKAINDSALQPYLNEEIG 130
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ AI R P F+ +TREKDLS+F + T + + +L+ ++ ISE
Sbjct: 131 FSEAIDRAQVPIRTFLFKHTREKDLSIFYSITGEKRPETK----EDVNTMLLVAAYTISE 186
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ F IGFLI +PFLI+DM++A+I++AMGMMMLPP +SLPFK++ F+++DGWSLL +
Sbjct: 187 LKTGFTIGFLIYVPFLILDMVIASILLAMGMMMLPPAMVSLPFKILLFIMVDGWSLLTGS 246
Query: 241 LVKSF 245
+V +F
Sbjct: 247 IVNTF 251
>gi|87307408|ref|ZP_01089553.1| flagellar biosynthetic protein fliP-putative transporter of
flagellar proteins [Blastopirellula marina DSM 3645]
gi|87290148|gb|EAQ82037.1| flagellar biosynthetic protein fliP-putative transporter of
flagellar proteins [Blastopirellula marina DSM 3645]
Length = 317
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 82/242 (33%), Positives = 129/242 (53%), Gaps = 27/242 (11%)
Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
++ + T+LS+AP +L+M T F R IIV +LR +G +PP+ V+ ++
Sbjct: 72 TSPGGLVSTIQIMVLLTVLSLAPAILLMTTGFIRIIIVLGLLRQALGTQQLPPSQVVTAI 131
Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLM---------------------NNQITETTAIQRVA 129
ALFMT +M PT E + P ++ A ++
Sbjct: 132 ALFMTILLMYPTWQEVYEESVGPYTREEVNPDTGQQYKLFAVEDPATGEMGPDEAWEKGT 191
Query: 130 EPFWVFMRNNTR----EKDLSLFMDMAHSSHRNT--DITKNDHIEYRILIPSFMISELRR 183
+P FM D+ +F + ++ + D + + LIP+F++SEL+
Sbjct: 192 KPIRHFMSKQIDIAGNSDDVWMFFEFLPQGTKDKIGEPQSYDDVPLQALIPAFILSELKT 251
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F IGF I LPFLI+D++VA+I ++MGMMMLPP ISLPFK++ FVL+DGW+L+V L++
Sbjct: 252 AFLIGFQIYLPFLILDIVVASITISMGMMMLPPVMISLPFKLLLFVLVDGWTLVVGMLLQ 311
Query: 244 SF 245
SF
Sbjct: 312 SF 313
>gi|305674368|ref|YP_003866040.1| flagellar export machinery protein [Bacillus subtilis subsp.
spizizenii str. W23]
gi|305412612|gb|ADM37731.1| component of the flagellar export machinery [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 221
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 95/217 (43%), Positives = 144/217 (66%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+D + V+ + T+ S+AP +LI++TCF R +IV S +RT + S+PPN V+I
Sbjct: 9 SSSDPENVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLI 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF++M+PT + + PLM+N+I+ A + EP FM +TR+KDL+LF
Sbjct: 69 GLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYSKAEEPIKEFMSKHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
M+ A I ++P+F L+ +F+IGF+I +PFLIIDM+VA+++M+
Sbjct: 129 MNYAKMDKP----ESLKDIPLTTMVPAFATPILKTAFQIGFMIFIPFLIIDMVVASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
>gi|307637369|gb|ADN79819.1| Flagellar biosynthesis protein [Helicobacter pylori 908]
gi|325997557|gb|ADZ49765.1| Flagellar biosynthesis protein [Helicobacter pylori 2017]
Length = 250
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 109/251 (43%), Positives = 166/251 (66%), Gaps = 10/251 (3%)
Query: 1 MIRYCFFALFLVTPELV------FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPI 54
M + F L L+ P + A S++ +N P+D + + T+L +AP
Sbjct: 1 MRFFIFLMLALICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPS 60
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
L++++T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P
Sbjct: 61 LILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPY 120
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
M+ +I+ T A ++ A PF FM NTREKDL+LF + + + T D + +LIP
Sbjct: 121 MDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDDVSLSVLIP 176
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
+FMISEL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG+
Sbjct: 177 AFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGF 236
Query: 235 SLLVENLVKSF 245
+LL ENLV SF
Sbjct: 237 NLLTENLVASF 247
>gi|15606937|ref|NP_214318.1| flagellar biosynthesis protein FliP [Aquifex aeolicus VF5]
gi|6225367|sp|O67750|FLIP_AQUAE RecName: Full=Flagellar biosynthetic protein fliP
gi|2984179|gb|AAC07711.1| flagellar biosynthetic protein FliP [Aquifex aeolicus VF5]
Length = 239
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 89/239 (37%), Positives = 149/239 (62%), Gaps = 5/239 (2%)
Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
+ +++ VF++ + + +R TILS+ P +LIM T F R +
Sbjct: 5 LTILILSAGFVFSQIPP---IELKVGEGNLVDSIRLLIFLTILSLVPSILIMFTSFTRLV 61
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
+V S+LR +G PPN VII+L+LF+TF++M PT+D+ +QP + +I++ +
Sbjct: 62 VVLSLLRQAIGTPQAPPNQVIIALSLFLTFFIMKPTIDKINSEALQPYIREEISDEEFFK 121
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
RV FM +TR++ L F+ +A + + I R++IP+FM+SEL+ +FE
Sbjct: 122 RVEFYAKDFMLKHTRKETLEAFLSIAKI--PKDSVKEPHEIPLRVVIPAFMVSELKTAFE 179
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I FL+ +PFLI+D++VA+I+++MG++M+PP ISLPFK++ FVL +GW L+V +LV+S+
Sbjct: 180 IVFLLYIPFLIVDLVVASILISMGIIMIPPQLISLPFKIMLFVLANGWELVVLSLVRSY 238
>gi|157692315|ref|YP_001486777.1| flagellar biosynthesis protein FliP [Bacillus pumilus SAFR-032]
gi|157681073|gb|ABV62217.1| flagellar biosynthesis protein FliP [Bacillus pumilus SAFR-032]
Length = 221
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 95/217 (43%), Positives = 144/217 (66%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ + VR + T+ S+AP +LI++TCF R +IV S +RT + S+PPN V++
Sbjct: 9 NSSGAGNISTSVRLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATNSMPPNQVLV 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF++M+PT + + PL+N+ IT A ++ P FM +TR+KDL+LF
Sbjct: 69 GLALFLTFFIMAPTFSEINKEALTPLLNDDITLNQAYEKAEVPIKEFMSKHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+
Sbjct: 129 LSYAKMDTP----ESIKDIPLTAMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
>gi|90406809|ref|ZP_01215001.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
gi|90312046|gb|EAS40139.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
Length = 249
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 90/247 (36%), Positives = 150/247 (60%), Gaps = 8/247 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPA---DLSISTWIVRTFGIFTILSIAPILLIM 58
+ + +L L+ + A++ + + + ++ T LS P +L++
Sbjct: 5 LIFFIPSLLLLMSPSLSAQTGALTALTVTTNSLGNQEYSVTLQVLAFMTALSFLPAMLVL 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R ++V SILR +G+ P N VI +ALF+TF++M+P D+ E +QP +N
Sbjct: 65 MTSFTRIVVVMSILRQALGLQQTPSNQVINGIALFLTFFIMTPVFDKINEEALQPYLNED 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+ AI++ +P FM TR KDL F+++A+ + + + + +LIP+F+
Sbjct: 125 MNIVQAIEQGKKPLMAFMLAQTRLKDLETFLEIANV-----QVDTPEEVPFTVLIPAFVT 179
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF+I +PFLIID++VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L++
Sbjct: 180 SELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIM 239
Query: 239 ENLVKSF 245
+L SF
Sbjct: 240 GSLANSF 246
>gi|209963528|ref|YP_002296443.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW]
gi|209956994|gb|ACI97630.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW]
Length = 267
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 111/231 (48%), Positives = 150/231 (64%), Gaps = 12/231 (5%)
Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
M D S + +V+ + TILS+AP LL+MVT F R ++V S+LR+ +G+ PPN+V
Sbjct: 33 MGGTGDASFAGRMVQVVALVTILSVAPGLLVMVTSFTRIVVVLSLLRSALGLQQTPPNMV 92
Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
++ LAL +T YVM PTLDRS G+QP+++ QITE A +R+ EPF FM+ + R KDL
Sbjct: 93 LLGLALLLTAYVMGPTLDRSWREGVQPMVDGQITEEQAFERIVEPFRDFMQAHVRPKDLE 152
Query: 147 LFMDMAHSSHRNTDI------------TKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
LF + R LI +F+ISELRR+FEIGFL+ LP
Sbjct: 153 LFRSFEAGTKSGAAPAAGSAGPAPSTEEAASAPGLRTLIAAFVISELRRAFEIGFLLFLP 212
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FL+IDMI+A ++MAMGMMMLPP ISLPFK+IFFV++DGW L+ LV+S+
Sbjct: 213 FLVIDMIIAAVLMAMGMMMLPPVIISLPFKIIFFVMVDGWLLVAGALVRSY 263
>gi|312115243|ref|YP_004012839.1| flagellar biosynthetic protein FliP [Rhodomicrobium vannielii ATCC
17100]
gi|311220372|gb|ADP71740.1| flagellar biosynthetic protein FliP [Rhodomicrobium vannielii ATCC
17100]
Length = 265
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 114/237 (48%), Positives = 160/237 (67%), Gaps = 11/237 (4%)
Query: 14 PELVFAKS-----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
P A+ + S+ I++ + T+LS+AP +LIMVTCF RF+I
Sbjct: 34 PSSAAAQQTGGQFGGLASLFPETADGTSSRIIQLVLVITVLSLAPGILIMVTCFTRFVIA 93
Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
S LR G+G+ S P N++++SLALFMT + MSPT D++ E G++P M+ +++E A Q++
Sbjct: 94 LSFLRVGLGLPSTPANIILVSLALFMTAFTMSPTFDKAWETGVKPFMDKKLSEDAAFQKI 153
Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
+PF FM N R+KD+ LF M+ + R LIP+FMISELRR FEIG
Sbjct: 154 TDPFREFMMANVRQKDIDLFAGMSPQASAEGATA------LRTLIPAFMISELRRGFEIG 207
Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FLI+LPFL+ID+I +T++MAMGMMM+ PT++SLPFKV+FF+LIDGW+LLV NLV+SF
Sbjct: 208 FLIMLPFLVIDLIASTVLMAMGMMMVSPTTVSLPFKVLFFILIDGWNLLVGNLVRSF 264
>gi|157961199|ref|YP_001501233.1| flagellar biosynthesis protein FliP [Shewanella pealeana ATCC
700345]
gi|157846199|gb|ABV86698.1| flagellar biosynthetic protein FliP [Shewanella pealeana ATCC
700345]
Length = 249
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 85/247 (34%), Positives = 142/247 (57%), Gaps = 7/247 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIM 58
I + FA++ + + + + ++ + T LS P ++IM
Sbjct: 5 ILVIVGLTLCLAAPAAFAENGILPAVTVSTGADGSTQYSVTMQILLLMTALSFIPAMVIM 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R I+V SILR +G+ P N V+I +++FMTF++MSP D+ + +QP +
Sbjct: 65 LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMSPVFDKIYDQAVQPYIEQG 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+ A + P FM TR DL F++++ + I + + ++IP+F+
Sbjct: 125 MPLQDAFTKGQGPLKDFMLAQTRLTDLDTFIEISGYQN----INEPEDAPMTVIIPAFIT 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 240
Query: 239 ENLVKSF 245
L SF
Sbjct: 241 GTLANSF 247
>gi|149377875|ref|ZP_01895604.1| flagellar biosynthesis protein P [Marinobacter algicola DG893]
gi|149357817|gb|EDM46310.1| flagellar biosynthesis protein P [Marinobacter algicola DG893]
Length = 254
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 88/248 (35%), Positives = 147/248 (59%), Gaps = 8/248 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA---DLSISTWIVRTFGIFTILSIAPILLI 57
+ P + + P + + ++ + T L+ P +L+
Sbjct: 10 LATLALLIFTAWAPAALADIPGIPAFTVTPGEEEGVQEYSVSLQILALMTALTFLPAMLM 69
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
M+T F R I+VF+ILR +G+ S P N +++ L LF+T ++M P L+ E+ +QP M
Sbjct: 70 MMTSFTRIIVVFAILRQALGLQSTPSNQILLGLTLFLTIFIMKPVLEEVNEVALQPYMQE 129
Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
+++ A+++ ++PF FM TRE DL LFM +A + + + + +L+P+F+
Sbjct: 130 ELSSLEAVEQASQPFRKFMLAQTRESDLGLFMRIA-----DEQYDTAEDVSFWVLLPAFV 184
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
SEL+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+
Sbjct: 185 TSELKTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALI 244
Query: 238 VENLVKSF 245
+ L S+
Sbjct: 245 MGTLAASY 252
>gi|217033687|ref|ZP_03439114.1| hypothetical protein HP9810_5g29 [Helicobacter pylori 98-10]
gi|216943876|gb|EEC23313.1| hypothetical protein HP9810_5g29 [Helicobacter pylori 98-10]
Length = 231
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 103/225 (45%), Positives = 156/225 (69%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G
Sbjct: 8 PSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQ 67
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM NT
Sbjct: 68 TPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNT 127
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+IDM
Sbjct: 128 REKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDM 183
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 184 VISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 228
>gi|114777577|ref|ZP_01452558.1| flagellar biosynthetic protein fliP [Mariprofundus ferrooxydans
PV-1]
gi|114552048|gb|EAU54565.1| flagellar biosynthetic protein fliP [Mariprofundus ferrooxydans
PV-1]
Length = 249
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 94/229 (41%), Positives = 140/229 (61%), Gaps = 4/229 (1%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
+L + D ++ + TIL++AP +L+M+T F R +IVF+ LR +
Sbjct: 23 AADIPTLSLSLGNGDDPDAWFTGLKILAMLTILTLAPSILVMMTSFTRILIVFAFLRQAL 82
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G PPN ++I L+LF+T ++M P + + P +N +I ++ A +R P FM
Sbjct: 83 GTQQAPPNQILIGLSLFLTLFIMMPVWQKIDTTALTPYLNEEINQSVAFERGIAPLRDFM 142
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TRE DL LF++ A K + + +LIPSF+ISELR +FEIGFLI +PF+
Sbjct: 143 LKQTREDDLLLFLNAAKLKK----PAKAEDMPMHVLIPSFVISELRTAFEIGFLIYIPFI 198
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++D+IVA+++M+MGMMMLPP ISLP K+I FVL+DGW L+ NL+ SF
Sbjct: 199 VLDLIVASVLMSMGMMMLPPVMISLPLKIILFVLVDGWHLITANLIASF 247
>gi|239628946|ref|ZP_04671977.1| flagellar biosynthesis protein FliP [Clostridiales bacterium
1_7_47_FAA]
gi|239519092|gb|EEQ58958.1| flagellar biosynthesis protein FliP [Clostridiales bacterium
1_7_47FAA]
Length = 255
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 88/247 (35%), Positives = 142/247 (57%), Gaps = 2/247 (0%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ FAL + + + + + ++ +F L++ P L+IM+T
Sbjct: 8 ILAGAVFALTWAGSAMTAYATDVSVTLQGSSGAGKPMDMLDIMFLFLFLAVVPSLIIMMT 67
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R +IV S LR +G PPN +++ LALF+T ++M+P QP + IT
Sbjct: 68 SFTRIVIVLSFLRNALGTQQSPPNQILVGLALFLTLFIMAPVFTSVNVQAYQPYKSGTIT 127
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD--ITKNDHIEYRILIPSFMI 178
A R EP FM T +K L LF+ ++ + +T + ++PSF++
Sbjct: 128 REEAFDRAQEPMKEFMLKQTEKKSLDLFLSISKTDPPDTSKGPEGYMELGLTTIVPSFIL 187
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL ++F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LPFK++ FVL+DGWSL++
Sbjct: 188 SELNKAFTMGFLIFIPFLIIDLVVSSTLMSMGMVMLPPTMIALPFKIMMFVLVDGWSLVI 247
Query: 239 ENLVKSF 245
+ LV+SF
Sbjct: 248 KTLVQSF 254
>gi|330808228|ref|YP_004352690.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376336|gb|AEA67686.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 249
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 92/224 (41%), Positives = 135/224 (60%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ I T LS P ++++T F R IIVFSILR +G+
Sbjct: 27 PAITLGTNAEGAQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQT 86
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N ++ +ALF+T ++M+P DR + +QP + +IT A+ + P FM TR
Sbjct: 87 PSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKITAQDAVAKAEVPIKDFMLAQTR 146
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL LFM ++ TDI D IL+P+F+ SEL+ +F+IGF+I +PFLIID++
Sbjct: 147 SSDLELFMRLSKR----TDIPSADQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLV 202
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+I+MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 203 VASILMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 246
>gi|317133473|ref|YP_004092787.1| flagellar biosynthetic protein FliP [Ethanoligenens harbinense
YUAN-3]
gi|315471452|gb|ADU28056.1| flagellar biosynthetic protein FliP [Ethanoligenens harbinense
YUAN-3]
Length = 267
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 97/242 (40%), Positives = 141/242 (58%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+C + + +N S + ++ + T++++AP +LIM+T F
Sbjct: 29 FCIVFSVGFAVSAASSDPGISLTLNGLTTPSGTANTLQILLLLTLIALAPSILIMMTSFT 88
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R II S LR +G PPN V++ +ALF++ ++MSP +++ QPL+N QIT
Sbjct: 89 RIIIFLSFLRNALGTQQTPPNQVLVGIALFLSLFIMSPVINQINTTAYQPLVNGQITTEQ 148
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +P FM T L F+ MA + + D+I +LIP+F+ISEL+R
Sbjct: 149 AEVNAMKPLRQFMFKQTENASLKTFLSMAGTPT----VKSLDNIPNSVLIPAFVISELKR 204
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F +GFLI LPFLIID+IV T +M+MGMMMLPPT ISLP K+ FVL+DGW L V++LV
Sbjct: 205 AFMMGFLIYLPFLIIDVIVGTTLMSMGMMMLPPTMISLPLKLALFVLVDGWGLTVQSLVY 264
Query: 244 SF 245
SF
Sbjct: 265 SF 266
>gi|17989425|ref|NP_542058.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 1 str.
16M]
gi|256043079|ref|ZP_05446023.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 1 str.
Rev.1]
gi|260564309|ref|ZP_05834794.1| flagellar transporter FliP [Brucella melitensis bv. 1 str. 16M]
gi|265989517|ref|ZP_06102074.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 1 str.
Rev.1]
gi|17985302|gb|AAL54322.1| flagellar biosynthetic protein flip [Brucella melitensis bv. 1 str.
16M]
gi|260151952|gb|EEW87045.1| flagellar transporter FliP [Brucella melitensis bv. 1 str. 16M]
gi|263000186|gb|EEZ12876.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 1 str.
Rev.1]
Length = 246
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 125/242 (51%), Positives = 171/242 (70%), Gaps = 3/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+T ++ D + + S IV+ FG+ T+LSIAP LLIMVT F
Sbjct: 7 LGVILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFT 66
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+I +
Sbjct: 67 RFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEIMQEA 126
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A +++PF FM R+KDL LF D+A S R +D +++R+L+P+FMISELRR
Sbjct: 127 AFGEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRR 183
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++
Sbjct: 184 GFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIR 243
Query: 244 SF 245
SF
Sbjct: 244 SF 245
>gi|306820131|ref|ZP_07453779.1| flagellar biosynthetic protein FliP [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551909|gb|EFM39852.1| flagellar biosynthetic protein FliP [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 264
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 88/242 (36%), Positives = 149/242 (61%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
F F A ++ +N + + + + FT+LS+ P +LIM+TCF
Sbjct: 22 LIAFIYFFNNMASATAIPNVSLNINTGGNSTDMSDSIELLLFFTLLSVLPSILIMMTCFT 81
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R +++ S L+ +G P+ V++ LALF+TF++M+P ++ + G++P + QI +
Sbjct: 82 RIVVILSFLKQAIGAQQTIPSQVMVGLALFLTFFIMAPVGKQAYDGGLKPYFDKQIKQEQ 141
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A++ V +P FM TR+ D+ LF++++ D ++I +LIP+F ISEL+
Sbjct: 142 AVENVMKPVREFMFKQTRQSDIKLFLELSKDEQLKKDNVTLENIPNSVLIPAFCISELKT 201
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
F+IGFL+ +PF+IIDM+V++ +M+MGMMMLPP IS+PFK++ FVL+DGW L++ ++V
Sbjct: 202 GFQIGFLLFIPFIIIDMVVSSTLMSMGMMMLPPMMISMPFKLLLFVLVDGWDLVIRSIVM 261
Query: 244 SF 245
F
Sbjct: 262 GF 263
>gi|217033150|ref|ZP_03438609.1| hypothetical protein HPB128_194g3 [Helicobacter pylori B128]
gi|216945122|gb|EEC23821.1| hypothetical protein HPB128_194g3 [Helicobacter pylori B128]
Length = 231
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 104/227 (45%), Positives = 158/227 (69%), Gaps = 4/227 (1%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
A S++ +N P+D + + T+L +AP L++++T F R I+VFS LRT +G
Sbjct: 6 ALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 65
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM
Sbjct: 66 QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 125
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+I
Sbjct: 126 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 181
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
DM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 182 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 228
>gi|121533746|ref|ZP_01665573.1| flagellar biosynthetic protein FliP [Thermosinus carboxydivorans
Nor1]
gi|121307737|gb|EAX48652.1| flagellar biosynthetic protein FliP [Thermosinus carboxydivorans
Nor1]
Length = 253
Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 97/249 (38%), Positives = 148/249 (59%), Gaps = 9/249 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSLH-----DVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
+ + A +L A + + + ++ T+LS+AP +L
Sbjct: 8 MLFAVMAAWLSVIATAQAAPLVPVPNLNIGVTSAENPKDVALSLQVLFTLTVLSLAPSIL 67
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
IM+T F R IIV S LR+ + PPN V+I LALF+TFY MSP D+ + +QP +
Sbjct: 68 IMMTSFTRIIIVLSFLRSALATQQTPPNQVLIGLALFLTFYTMSPYWDQINQNALQPYLA 127
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
I++ TA+ +P FM TRE DL+LF++++ N + I LIP+F
Sbjct: 128 GTISQDTAMSEAMKPLRQFMLKQTRENDLALFVNLSEGPRPN----SPEDITTSTLIPAF 183
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
+ISEL+ +F+IGFLI +PF++IDM+VA+ +M+MGMMM+PP ISLPFK++ F+L+DGW L
Sbjct: 184 IISELKTAFQIGFLIYIPFIVIDMVVASTLMSMGMMMVPPVMISLPFKLLLFILVDGWHL 243
Query: 237 LVENLVKSF 245
++ +L+ SF
Sbjct: 244 IIRSLITSF 252
>gi|225849157|ref|YP_002729321.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644291|gb|ACN99341.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 239
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 97/239 (40%), Positives = 151/239 (63%), Gaps = 5/239 (2%)
Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
L++ + F S + + + ++ + T+LSIAP +LI +T F R +
Sbjct: 4 ALFILLSLFVFFDFSQADLLTETLQNFNRLDTSLKILLLITVLSIAPAILISMTSFVRIV 63
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IV S+LR +G+ + PPN VI+ LALF+TF++M P D+ E+ + P + QI++ AI+
Sbjct: 64 IVLSLLRHALGIPTAPPNQVIVGLALFLTFFIMKPVFDKINEVSLTPYLKKQISDVQAIE 123
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
+P FM NTR++DL LF+D++ K + + LIP+FMISE++ +FE
Sbjct: 124 NAKQPLKEFMLKNTRKEDLKLFIDISKEKP-----QKLEDVSMTTLIPAFMISEIKTAFE 178
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I F+I LPF++ID +VA+I+M+MGMMM+PP ISLPFK++ FVL DGW LL + L++S+
Sbjct: 179 IVFIIYLPFIVIDFVVASILMSMGMMMVPPMFISLPFKLMLFVLADGWELLTKALIQSY 237
>gi|317014102|gb|ADU81538.1| flagellar biosynthesis protein FliP [Helicobacter pylori
Gambia94/24]
Length = 248
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 105/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVFAK--SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + S++ +N P+D + + T+L +AP L++++T
Sbjct: 6 FLILICPLICPLMSADSTLPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+
Sbjct: 66 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL
Sbjct: 126 TEAFEKSALPFKKFMLKNTREKDLALFFRIRNLPNPKT----PDDVSLSVLIPAFMISEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL
Sbjct: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 241
Query: 242 VKSF 245
V SF
Sbjct: 242 VASF 245
>gi|296124299|ref|YP_003632077.1| flagellar biosynthetic protein FliP [Planctomyces limnophilus DSM
3776]
gi|296016639|gb|ADG69878.1| flagellar biosynthetic protein FliP [Planctomyces limnophilus DSM
3776]
Length = 339
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 91/250 (36%), Positives = 134/250 (53%), Gaps = 15/250 (6%)
Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
P L + S + ++ + T+L++AP +L+M TCF RF+IV
Sbjct: 85 LAFPPGLAAPALPTGLDASNLTSRSGLSNTLKIMFLLTVLTLAPSILMMTTCFIRFVIVL 144
Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM-----NNQITETTA 124
+LR +G +PPN VI SL LF+TF VM+P + E GI+P I E TA
Sbjct: 145 GLLRQALGTQQLPPNQVITSLCLFLTFLVMAPIWQEAYEAGIRPYTAPRAGEAAIDEWTA 204
Query: 125 IQRVAEPFWVFMRNNTRE----KDLSLFMDMAHSSHRN------TDITKNDHIEYRILIP 174
R P FM + +F+D + + T + + L+P
Sbjct: 205 FNRTLVPIRRFMAEQIDRTGSSDSVWMFIDFMRPPQDSPALSTWKEPTTYEDVPLVALLP 264
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
++++SEL+ SF I F I LPFLIIDM++++I+++MGMMMLPP ISLPFK++ FV+IDGW
Sbjct: 265 AYVLSELKVSFLIAFQIYLPFLIIDMVISSILISMGMMMLPPVLISLPFKLLLFVMIDGW 324
Query: 235 SLLVENLVKS 244
L V L++S
Sbjct: 325 FLTVGMLLES 334
>gi|313673292|ref|YP_004051403.1| flagellar biosynthetic protein flip [Calditerrivibrio nitroreducens
DSM 19672]
gi|312940048|gb|ADR19240.1| flagellar biosynthetic protein FliP [Calditerrivibrio nitroreducens
DSM 19672]
Length = 244
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 99/220 (45%), Positives = 145/220 (65%), Gaps = 4/220 (1%)
Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
+ ++ + TILSIAP +LIM+T F R IIVFS LR+ MG PPN V
Sbjct: 29 VEGATAPKDVAVTLQIIFLITILSIAPAILIMMTSFTRIIIVFSFLRSAMGTQQTPPNQV 88
Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
+I LALF+TF++MSP + + P ++ +I T A++ +P FM NTR+KD+
Sbjct: 89 LIGLALFLTFFIMSPVFSEMNKNALAPYLDGKIAFTDALKEAKKPLRKFMLENTRKKDIM 148
Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
F+ ++ S T D I +L+P+F+ SEL+ +FEIGFL+ LPFLIID +V++++
Sbjct: 149 TFLQVSKSPMPKT----VDDIPDMVLLPAFVTSELQTAFEIGFLLFLPFLIIDFVVSSVL 204
Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++MGMMMLPP IS+PFK++ FVL+DGW+L+V +LVKSF+
Sbjct: 205 LSMGMMMLPPVMISMPFKILLFVLVDGWNLIVMSLVKSFM 244
>gi|323136548|ref|ZP_08071629.1| flagellar biosynthetic protein FliP [Methylocystis sp. ATCC 49242]
gi|322397865|gb|EFY00386.1| flagellar biosynthetic protein FliP [Methylocystis sp. ATCC 49242]
Length = 243
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 117/245 (47%), Positives = 162/245 (66%), Gaps = 3/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M R + + A+ + + S S I++ G T+LSIAP LLIMVT
Sbjct: 1 MNRLLIIGVMMTPSIAFAAEGLDLNALLPNGAASSSGKIIQLLGALTVLSIAPGLLIMVT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F RF I S LRTG+G+ S P NLV+ISLALFMTFYVM+P ++++ G++PL+ N+IT
Sbjct: 61 SFTRFAIALSFLRTGLGLQSTPANLVLISLALFMTFYVMTPAMNQAWSSGVKPLVENKIT 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
E A ++++ PF FM + R+KD+ LF D+ T+ +LIP+FMISE
Sbjct: 121 EVEAFEKISAPFREFMIAHVRDKDIRLFEDLRKVEPSTKGKTELQ---LSVLIPAFMISE 177
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
LRR FEIGFLI++PFL ID+IVA + M+MGMMMLPP +ISLP K++FF+LIDGW+LL +
Sbjct: 178 LRRGFEIGFLIVVPFLAIDIIVAVLTMSMGMMMLPPATISLPAKILFFILIDGWNLLAGS 237
Query: 241 LVKSF 245
L++S+
Sbjct: 238 LIRSY 242
>gi|284041537|ref|YP_003391877.1| flagellar biosynthetic protein FliP [Conexibacter woesei DSM 14684]
gi|283945758|gb|ADB48502.1| flagellar biosynthetic protein FliP [Conexibacter woesei DSM 14684]
Length = 213
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 86/208 (41%), Positives = 133/208 (63%), Gaps = 3/208 (1%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
++ + ++ P L +T F R +IV +RT +G + PPN V++ +ALF+T +
Sbjct: 8 SAIQVLLLIGAFTLIPAGLFCLTGFTRILIVLGFIRTAIGTPTAPPNQVLVGIALFLTLF 67
Query: 98 VMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
VM+PT + E PL +I A++R EP FM TR KDL+LF+ ++ +
Sbjct: 68 VMAPTFTQIKETAWDPLEAGRINTAQAVRRAEEPLRQFMFEQTRTKDLALFVRLSRTR-- 125
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
I +LIP+F++SEL+ +F+IGF+I LPFL+ID+IVA+ +M+MGM+MLPP
Sbjct: 126 -EQPRTRADIPTTVLIPAFIVSELKTAFQIGFMIFLPFLVIDLIVASTLMSMGMIMLPPV 184
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
ISLPFK++ FVL+DGW+L+ ++LV+SF
Sbjct: 185 FISLPFKILLFVLVDGWALITDSLVRSF 212
>gi|319649551|ref|ZP_08003707.1| flagellar biosynthesis protein P [Bacillus sp. 2_A_57_CT2]
gi|317398713|gb|EFV79395.1| flagellar biosynthesis protein P [Bacillus sp. 2_A_57_CT2]
Length = 221
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 95/217 (43%), Positives = 149/217 (68%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ + V+ F + T+LS+AP +LI++TCF R IIV S +RT + +PPN V+I
Sbjct: 9 NSSSPENVSTSVKLFLLLTVLSLAPSILILMTCFTRIIIVLSFVRTALATQQMPPNQVLI 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
L+LF+TF++M+PT+ E + PL N +I A ++ + PF FM +TR+KDL+LF
Sbjct: 69 GLSLFLTFFIMAPTMQEVNEQALTPLFNEEINLEEAYEKASIPFKEFMSAHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ + + + + I L+P+F ISE++ +F+IGF+I +PFL+IDM+VA+++M+
Sbjct: 129 LQYSGAEAP----SSIEDIPLTSLVPAFAISEIKTAFQIGFMIFIPFLVIDMVVASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLQSF 221
>gi|116694514|ref|YP_728725.1| flagellar biosynthesis protein FliP [Ralstonia eutropha H16]
gi|113529013|emb|CAJ95360.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
Length = 261
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 96/218 (44%), Positives = 145/218 (66%), Gaps = 4/218 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
P I + V+T + T LS P ++++T F R IIV +LR+ +G + PPN V++
Sbjct: 47 APGGGQIWSLPVQTLVLLTSLSFLPAAMLLMTGFTRIIIVLGLLRSALGTATSPPNQVLV 106
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
L+LF+TF+VM+P DR +PL N+I+ A + AEP FM TREKDL++F
Sbjct: 107 GLSLFLTFFVMAPVFDRVYNDAYKPLSENKISLEAAAAKAAEPLKAFMLRQTREKDLAMF 166
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
MA + ++ + + IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+++MA
Sbjct: 167 AQMAKAP----EMQGPEEVPLSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMA 222
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 223 MGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 260
>gi|260429128|ref|ZP_05783105.1| flagellar biosynthetic protein FliP [Citreicella sp. SE45]
gi|260419751|gb|EEX13004.1| flagellar biosynthetic protein FliP [Citreicella sp. SE45]
Length = 242
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 96/244 (39%), Positives = 145/244 (59%), Gaps = 3/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+R ++ +N+ S++ ++ + T+LS+AP + IMVTC
Sbjct: 1 MRRLIALTGFALLMQAGPAAAQEITLNLGEGGSVTAASLQLIALITLLSLAPGIAIMVTC 60
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
FP + V SILR +G+ PPN++I+SLALF+T++VM P + G+ PL++ QI
Sbjct: 61 FPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFVMEPVFTEAWTNGVAPLLDEQIEA 120
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A +R EPF FM D F ++A + +L+PSFM+SE+
Sbjct: 121 REAFERTLEPFRGFMATRI---DPDTFANIADLRPDARGTELDPGAPLSLLVPSFMLSEI 177
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
R+F++GFLI LPFLIID++VA ++M+MGMMM+PP +SLPFK+ FFV+ DGWSLL +L
Sbjct: 178 ARAFQVGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAIVSLPFKLAFFVIADGWSLLAGSL 237
Query: 242 VKSF 245
V+S+
Sbjct: 238 VRSY 241
>gi|224373184|ref|YP_002607556.1| flagellar biosynthesis protein FliP [Nautilia profundicola AmH]
gi|223589473|gb|ACM93209.1| flagellar biosynthetic protein FliP [Nautilia profundicola AmH]
Length = 242
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 97/245 (39%), Positives = 149/245 (60%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M + + + +++ + P ++ + T+L +AP +++++T
Sbjct: 1 MKKLFLILIPIFIFAAAPQIPTVNLSLTAPETPKQLVSVLNITILLTLLVLAPSIILVMT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R ++VF LR +G PP +++SLAL +TF++M P ++ GI+P M +I
Sbjct: 61 SFVRLLVVFGFLRQALGTPQSPPTTLLVSLALVLTFFIMEPYAKQAYNTGIKPYMEEKIG 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A +PF FM NTREKDL+LF + H + T D + IL+P+FM+SE
Sbjct: 121 YDQAFNNAVKPFKKFMIKNTREKDLALFFRIRHLPNPKT----IDDVPLTILVPAFMLSE 176
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +FEIGFLI LPFLIIDM+V++I+M++GMMMLPP ISLPFK++ FVL+DGW+L+V
Sbjct: 177 LKTAFEIGFLIFLPFLIIDMVVSSILMSLGMMMLPPVMISLPFKILVFVLVDGWNLIVMG 236
Query: 241 LVKSF 245
LV+SF
Sbjct: 237 LVQSF 241
>gi|212634377|ref|YP_002310902.1| flagellar biosynthesis protein FliP [Shewanella piezotolerans WP3]
gi|212555861|gb|ACJ28315.1| Flagellar biosynthetic protein FliP [Shewanella piezotolerans WP3]
Length = 249
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 87/247 (35%), Positives = 146/247 (59%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIM 58
++ + AL L++P ++ L V + + ++ + T LS P +IM
Sbjct: 5 IVLFGGLALSLISPTVLAETGILPAVTVSTGADGSTQYSVTMQILLLMTALSFIPAAVIM 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R I+V SILR +G+ P N ++I +++FMTF++MSP D+ E ++P +
Sbjct: 65 LTSFTRIIVVLSILRQAIGLQQAPSNQILIGISMFMTFFIMSPVFDKIYEQAVKPYIEQG 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+ A P FM + TR DL F++++ + I + + ++IP+F+
Sbjct: 125 MPIQDAFNTGKGPLKDFMLSQTRLTDLDTFIEISGYQN----INEPEDAPMSVIIPAFIT 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 240
Query: 239 ENLVKSF 245
L SF
Sbjct: 241 GTLANSF 247
>gi|134095087|ref|YP_001100162.1| flagellar biosynthesis protein FliP [Herminiimonas arsenicoxydans]
gi|133738990|emb|CAL62038.1| Flagellar biosynthetic protein FliP Precursor [Herminiimonas
arsenicoxydans]
Length = 252
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 95/234 (40%), Positives = 140/234 (59%), Gaps = 4/234 (1%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
+ A P + ++T + T LS P +L+M+T F R IIV S+
Sbjct: 22 MAAMAQQAGLPALTSTPTPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSL 81
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LR +G S PPN VII L+LF+T +VMSP LD+ QP N+I A+ + P
Sbjct: 82 LRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSANKIQMGEALDKAVAP 141
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
FM TRE DL+L++ M+ ++ + I RIL+P+F+ SEL+ +F+I F I
Sbjct: 142 LKTFMIKQTRESDLALYVKMSKGP----ELQGPEDIPLRILVPAFITSELKTAFQISFAI 197
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 198 FIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSF 251
>gi|255021382|ref|ZP_05293430.1| Flagellar biosynthesis protein fliP [Acidithiobacillus caldus ATCC
51756]
gi|254969245|gb|EET26759.1| Flagellar biosynthesis protein fliP [Acidithiobacillus caldus ATCC
51756]
Length = 223
Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 85/225 (37%), Positives = 138/225 (61%), Gaps = 4/225 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
P + + ++T T+L P LL+M+T F R IIV S+L+ +G +
Sbjct: 2 PALTASPAPGGGTEYSLSIQTLLFMTVLVFLPALLLMMTAFTRIIIVLSLLKQALGSTQM 61
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PP+ V++ LALF+TF+VM+P + +QPL +N+I A+ + P FM + TR
Sbjct: 62 PPSQVMVGLALFLTFFVMAPVFQQINTEALQPLNDNKIDLVQAMAKAEGPLRNFMLSQTR 121
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL+LF+ ++ + K +L+P+F+ SEL+ F+IGFLI +PF+IID++
Sbjct: 122 PDDLALFVKLSGH----KALEKPSDTPLSLLVPAFITSELKTGFQIGFLIFIPFVIIDLV 177
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
VA ++M++GMMML P ++S P K++ FVL+DGW L++ +LV+SF+
Sbjct: 178 VAAVLMSLGMMMLSPVTVSFPLKLMLFVLVDGWDLVIGSLVQSFV 222
>gi|295399824|ref|ZP_06809805.1| flagellar biosynthetic protein FliP [Geobacillus
thermoglucosidasius C56-YS93]
gi|312111664|ref|YP_003989980.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y4.1MC1]
gi|294978227|gb|EFG53824.1| flagellar biosynthetic protein FliP [Geobacillus
thermoglucosidasius C56-YS93]
gi|311216765|gb|ADP75369.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y4.1MC1]
Length = 222
Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 92/195 (47%), Positives = 137/195 (70%), Gaps = 4/195 (2%)
Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
IAP +LIM+TCF R IIV S +RT +G +PPN V+I LA+F+TF++M+PT +
Sbjct: 31 IAPGILIMMTCFTRIIIVLSFVRTSLGTQQMPPNQVLIGLAMFLTFFIMAPTFKEINDQA 90
Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170
+QPL + +I A +R + P FM +TR+KDL+LF+ + + T I
Sbjct: 91 LQPLFSEKINLEQAYERASVPIKEFMSKHTRQKDLALFLSYSGAEKPKT----VQDIPLS 146
Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
L+P+F ISE++ +F++G +I +PFL+IDMIVA+++M+MGMMMLPP ISLPFK++ FVL
Sbjct: 147 TLVPAFAISEIKTAFQMGVMIFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVL 206
Query: 231 IDGWSLLVENLVKSF 245
+DGW L+V++L++SF
Sbjct: 207 VDGWYLVVKSLLESF 221
>gi|160939626|ref|ZP_02086974.1| hypothetical protein CLOBOL_04518 [Clostridium bolteae ATCC
BAA-613]
gi|158437417|gb|EDP15181.1| hypothetical protein CLOBOL_04518 [Clostridium bolteae ATCC
BAA-613]
Length = 258
Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 88/241 (36%), Positives = 143/241 (59%), Gaps = 3/241 (1%)
Query: 8 ALFLVTPELVFA-KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
++ P V + + + + + ++ +F L++ P L+IM+T F R +
Sbjct: 17 FAWMWAPGAVTSYATDVSLTLQGSSGTGKPMDMLDIMFLFLFLAVVPSLIIMMTSFTRIV 76
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IV S LR +G PPN +++ LALF+T ++MSP + QP QIT A +
Sbjct: 77 IVLSFLRNALGTQQSPPNQILVGLALFLTLFIMSPVIASVNTQAYQPYREGQITREQAFE 136
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND--HIEYRILIPSFMISELRRS 184
R EP FM T +K L LF+ ++ + + + + ++PSF++SEL ++
Sbjct: 137 RAQEPMKEFMLKQTEKKSLDLFLSISKAQPPDISQGQEGYMKLGLTTIVPSFILSELNKA 196
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LPFK++ FVL+DGWSL+++ LV+S
Sbjct: 197 FTMGFLIFIPFLIIDLVVSSTLMSMGMVMLPPTMIALPFKIMMFVLVDGWSLVIKTLVQS 256
Query: 245 F 245
F
Sbjct: 257 F 257
>gi|163750540|ref|ZP_02157778.1| flagellar biosynthesis protein [Shewanella benthica KT99]
gi|161329695|gb|EDQ00684.1| flagellar biosynthesis protein [Shewanella benthica KT99]
Length = 248
Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 89/247 (36%), Positives = 143/247 (57%), Gaps = 7/247 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVM---NIPADLSISTWIVRTFGIFTILSIAPILLIM 58
+ YCF L+ FA + + + + ++ + T +S P ++IM
Sbjct: 4 LSYCFILSLLLISPGAFALDGVLPALIVTTTADGGTQYSVTMQILLLMTAMSFLPAMIIM 63
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R I+V SILR +G+ P N V+I +++FMTF++M+P D+ +QP +
Sbjct: 64 LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMAPVFDKIYAEAVQPYIAET 123
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+ A EP FM TR DL F++++ + I + + +LIPSF+
Sbjct: 124 MNIEQAFNIGKEPIKTFMLAQTRVTDLDTFIEISGYQN----INSPEDVPMSVLIPSFIT 179
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++
Sbjct: 180 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 239
Query: 239 ENLVKSF 245
L SF
Sbjct: 240 GTLANSF 246
>gi|237750901|ref|ZP_04581381.1| flagellar biosynthesis protein FliP [Helicobacter bilis ATCC 43879]
gi|229373346|gb|EEO23737.1| flagellar biosynthesis protein FliP [Helicobacter bilis ATCC 43879]
Length = 275
Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 96/233 (41%), Positives = 145/233 (62%), Gaps = 8/233 (3%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
S+ +N P+ + + + T+L +AP L++M+T F R +IV LRT +G
Sbjct: 40 PSVDLSINPPSTPTQLVTTLNIVVLLTLLILAPSLVLMMTSFTRILIVLGFLRTALGTQQ 99
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PP V++SLA+ +TF++M P + + +GI+P M +I A + PF FM NT
Sbjct: 100 SPPTQVLVSLAMILTFFIMEPVIKDAYNVGIKPYMEEKIGYEEAFEETMRPFKKFMLMNT 159
Query: 141 REKDLSLFMDMAHSSHRNTD--------ITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
R D++LF + + D D + I++PSFMISEL+ +F+IGFL+
Sbjct: 160 RHSDIALFYKIRNEEPPQMDNITTKEQFEALIDKVSLSIILPSFMISELKTAFQIGFLLY 219
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LPFL+IDM++A+++MAMGMMMLPP ISLPFK++ FVL+DG++LL+ NLV+SF
Sbjct: 220 LPFLVIDMVIASVLMAMGMMMLPPVMISLPFKILIFVLVDGFNLLIWNLVRSF 272
>gi|294140213|ref|YP_003556191.1| flagellar biosynthetic protein FliP [Shewanella violacea DSS12]
gi|293326682|dbj|BAJ01413.1| flagellar biosynthetic protein FliP [Shewanella violacea DSS12]
Length = 248
Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 84/224 (37%), Positives = 136/224 (60%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
V P + + ++ + T +S P ++IM+T F R I+V SILR +G+
Sbjct: 27 PALTVTTTPDGGTQYSVTMQILLLMTAMSFLPAMIIMLTSFTRIIVVLSILRQAIGLQQT 86
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N V+I +++FMTF++M+P D+ + ++P + + A EP FM TR
Sbjct: 87 PSNQVLIGISMFMTFFIMAPVFDKIYDEAVKPYIAETMDIEQAFNIGKEPIKTFMLAQTR 146
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL F++++ + I + + +LIPSF+ SEL+ +F+IGF++ +PFL++D++
Sbjct: 147 LTDLDTFIEISGYQN----IDSPEDVPMSVLIPSFITSELKTAFQIGFMLFVPFLVLDLV 202
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ L SF
Sbjct: 203 VASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 246
>gi|15895419|ref|NP_348768.1| flagellar biosynthesis protein FliP [Clostridium acetobutylicum
ATCC 824]
gi|15025142|gb|AAK80108.1|AE007715_13 Flagellar biosynthesis protein FliP [Clostridium acetobutylicum
ATCC 824]
gi|325509565|gb|ADZ21201.1| flagellar biosynthesis protein FliP [Clostridium acetobutylicum EA
2018]
Length = 261
Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 90/257 (35%), Positives = 147/257 (57%), Gaps = 16/257 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVM------------NIPADLSISTWIVRTFGIFTI 48
++ F A + ++ + T+
Sbjct: 7 IMLAVFLVFLAFLGARAHAAPVDTASTIQIPKVNISVDNANSNNPKDFVDNIKLLLVLTV 66
Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
+++ P +++M+T F R I+V LRT MG PPN V+I LALF+T ++M PT + +
Sbjct: 67 ITLLPSIIMMMTSFTRIIVVLGFLRTSMGTQQSPPNQVLIGLALFLTMFIMMPTYKQINK 126
Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
IQP +N I++ A+ + +P FM T +KDL LF+D+ + S + T D +
Sbjct: 127 NAIQPYLNKSISQQQALLEMEKPLRTFMYKQTYQKDLKLFIDLDNQSGKITK----DTVP 182
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+ ++P+F+ISEL+ +F IGFL+ +PFLIID++VA+I+M+MGMMMLPP +S+PFK++ F
Sbjct: 183 FHDIVPAFIISELKTAFTIGFLLYIPFLIIDLVVASILMSMGMMMLPPVMVSMPFKLLLF 242
Query: 229 VLIDGWSLLVENLVKSF 245
+++DGW L+V++LV SF
Sbjct: 243 IMVDGWYLIVKSLVLSF 259
>gi|288870652|ref|ZP_06114850.2| flagellar biosynthetic protein FliP [Clostridium hathewayi DSM
13479]
gi|288866388|gb|EFC98686.1| flagellar biosynthetic protein FliP [Clostridium hathewayi DSM
13479]
Length = 259
Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 91/243 (37%), Positives = 140/243 (57%), Gaps = 3/243 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
F + ++ FA S + + + ++ +F L++ P LLIM+T F R
Sbjct: 17 AFIRVSAACGQIAFA-SDISLTLEGSSGSGKPMDMLDIMFLFLFLAVVPSLLIMMTSFTR 75
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
+IV S LR +G PPN V+I LALF+T ++MSP + +P IT A
Sbjct: 76 IVIVLSFLRNALGTQQSPPNQVMIGLALFLTLFIMSPVFAKVNTQAYEPYKAGAITREEA 135
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD--ITKNDHIEYRILIPSFMISELR 182
R EP FM T +K L LF+ ++ + + + +L+PSF++SEL
Sbjct: 136 FTRAQEPMKEFMLKQTEKKSLDLFLSISKTEVPDVSGGPEGYMKLGLTVLVPSFILSELN 195
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
++F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LPFK++ FVL+DGWSL+++ LV
Sbjct: 196 KAFTMGFLIYIPFLIIDLVVSSTLMSMGMVMLPPTMIALPFKIMMFVLVDGWSLVIKTLV 255
Query: 243 KSF 245
F
Sbjct: 256 TGF 258
>gi|302878289|ref|YP_003846853.1| flagellar biosynthetic protein FliP [Gallionella capsiferriformans
ES-2]
gi|302581078|gb|ADL55089.1| flagellar biosynthetic protein FliP [Gallionella capsiferriformans
ES-2]
Length = 249
Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 91/217 (41%), Positives = 143/217 (65%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ ++T I T LS P +L+M+T F R IIV S+LR+ +G + PPN V+I
Sbjct: 35 AAGGGQSYSLSLQTLLILTSLSFLPAMLLMMTSFTRIIIVLSMLRSALGTQASPPNQVLI 94
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
L+LF+TF++MSP D+ P N+I A+++ P FM TR+ DL+LF
Sbjct: 95 GLSLFLTFFIMSPVFDKIYTDAYLPYSENRIELQEAVEKGVIPLKTFMLRQTRQADLALF 154
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ +++S ++ + + R+L+P+++ SEL+ +F+IGF++ +PFLIIDM+VA+I+M+
Sbjct: 155 VKISNS----DELQSAEEVPMRLLVPAYVTSELKTAFQIGFVVFIPFLIIDMVVASILMS 210
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMML P+ ISLPFK++ FVL DGW+LL+ +L +SF
Sbjct: 211 MGMMMLSPSIISLPFKIMLFVLADGWNLLIGSLAQSF 247
>gi|288553049|ref|YP_003424984.1| flagellar biosynthesis protein FliP [Bacillus pseudofirmus OF4]
gi|288544209|gb|ADC48092.1| flagellar biosynthesis protein FliP [Bacillus pseudofirmus OF4]
Length = 234
Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 99/230 (43%), Positives = 148/230 (64%), Gaps = 4/230 (1%)
Query: 16 LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
+ D+ + D + ++ + T+LS+AP +LI++T F R +IV S +R G
Sbjct: 8 PAITQIPGLDLDFLSEDPANVATTIQLLIVLTVLSLAPGILILMTSFTRIVIVLSFVRQG 67
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
+ S+PPN V+I LALF+TF++M+P E + P + ++T+ A+++ A P F
Sbjct: 68 LATQSMPPNQVLIGLALFLTFFIMAPIFAEVNEQALTPFLEGELTQEEALEQAAVPMKEF 127
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
M +TREKDL+LFM A D I LIP+F ISEL+ +F+IGFLI +PF
Sbjct: 128 MAQHTREKDLALFMGYAGMDRP----ESLDDIPLTALIPAFAISELKTAFQIGFLIFVPF 183
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
L+IDMIVA+++M+MGMMMLPP I+LPFK++ FVL+DGW L+V++L+ SF
Sbjct: 184 LVIDMIVASVLMSMGMMMLPPVMIALPFKILLFVLVDGWYLIVQSLLLSF 233
>gi|312879603|ref|ZP_07739403.1| flagellar biosynthetic protein FliP [Aminomonas paucivorans DSM
12260]
gi|310782894|gb|EFQ23292.1| flagellar biosynthetic protein FliP [Aminomonas paucivorans DSM
12260]
Length = 258
Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 143/224 (63%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+L + ++ + T+LS+AP +++M+T F R ++V +R MG+ +
Sbjct: 38 ALQVGVQAAKSPQDVALTLQIVALMTVLSMAPAIILMLTSFTRILVVLGFIRNAMGLQQM 97
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN V+++LALF+TF+ M+P D+ G+ P MN QI A R +P FM TR
Sbjct: 98 PPNQVLVTLALFLTFFTMTPVWDQIYGKGLVPYMNGQIPAAQAWDRSIKPLRAFMFRQTR 157
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
EK+LSL + +A D I R+L+P+FM+SEL+ +F++G ++ +PF++IDMI
Sbjct: 158 EKELSLMVRLAKMPQPKNQ----DGIPTRVLMPAFMLSELKTAFQMGVVLFIPFIVIDMI 213
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
V++++M+MGM+MLPP ISLPFKV+ FV+ DGW+L++ +LV SF
Sbjct: 214 VSSVLMSMGMIMLPPMMISLPFKVLLFVMADGWNLVIASLVTSF 257
>gi|261838080|gb|ACX97846.1| flagellar biosynthetic protein [Helicobacter pylori 51]
Length = 252
Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats.
Identities = 106/247 (42%), Positives = 163/247 (65%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
+I C L+ P + S++ +N P D + + T+L +AP L+++
Sbjct: 7 LILICPLICPLICPLMSADSVLPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILV 66
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +
Sbjct: 67 MTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKK 126
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
I+ T A ++ A PF FM NTREKDL+LF + + + T + + +LIP+FMI
Sbjct: 127 ISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PNEVSLSVLIPAFMI 182
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL
Sbjct: 183 SELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLT 242
Query: 239 ENLVKSF 245
ENLV SF
Sbjct: 243 ENLVASF 249
>gi|71735211|ref|YP_275528.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71555764|gb|AAZ34975.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320325127|gb|EFW81196.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329386|gb|EFW85379.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330889047|gb|EGH21708.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. mori
str. 301020]
Length = 250
Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats.
Identities = 97/248 (39%), Positives = 146/248 (58%), Gaps = 8/248 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSL----HDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
+R+ L ++ V A L + N + ++ I T LS P ++
Sbjct: 4 LRFVILLLLVMVTPAVLAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVM 63
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP +
Sbjct: 64 LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAE 123
Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
+++ A+ + P FM TR DL LFM ++ TDI D IL+P+F+
Sbjct: 124 KLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKR----TDIPTPDAAPLTILVPAFV 179
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+
Sbjct: 180 ISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 239
Query: 238 VENLVKSF 245
V L SF
Sbjct: 240 VGTLAGSF 247
>gi|326796455|ref|YP_004314275.1| flagellar biosynthetic protein FliP [Marinomonas mediterranea
MMB-1]
gi|326547219|gb|ADZ92439.1| flagellar biosynthetic protein FliP [Marinomonas mediterranea
MMB-1]
Length = 251
Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats.
Identities = 93/231 (40%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
L V P T ++ I T L++ P LIM+T F R IIV SILR
Sbjct: 22 GLAETGLPAVSVTTNPDGSQEYTVSLQILFIMTALTLLPSALIMMTSFTRIIIVLSILRQ 81
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G+ P N +I+ +ALF+T ++M PTLD+ E +QP +++ +T A++ + P
Sbjct: 82 ALGLQQAPSNQIILGMALFLTLFIMGPTLDQINESALQPYLSDNMTSLQAVKAASIPIRE 141
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM TRE D++LF+ +A + I + + + IL+P+F+ SEL+ +F+IGF++ +P
Sbjct: 142 FMLGQTREDDIALFVKLAG---KEGQIPSLEDLPFTILMPAFVTSELKTAFQIGFMLFIP 198
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FLI+DM+VA+++MAMGMMML P ISLPFK++ FV++DGWS+++ L SF
Sbjct: 199 FLIVDMVVASVLMAMGMMMLSPIIISLPFKIMLFVMVDGWSMIMGTLAASF 249
>gi|325288789|ref|YP_004264970.1| flagellar biosynthetic protein FliP [Syntrophobotulus glycolicus
DSM 8271]
gi|324964190|gb|ADY54969.1| flagellar biosynthetic protein FliP [Syntrophobotulus glycolicus
DSM 8271]
Length = 250
Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats.
Identities = 107/244 (43%), Positives = 157/244 (64%), Gaps = 6/244 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + +L L+ P+ V A D+ N P + ++ ++ F I T+LS+ P +L+++T
Sbjct: 12 VFFILVSLLLLLPQGVRAAGINLDLGNTPVE--QTSSAIQIFLIMTVLSLVPAILVLMTS 69
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+V S +R MG +PPN VII LAL +TF+VM+PT + I+P + NQI+
Sbjct: 70 FTRIIVVLSFVRNAMGTQQLPPNQVIIGLALILTFFVMAPTFSQVNTNAIKPYIENQISR 129
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ R P FM TREKDL+LF+ ++ T I +L+PSF+ISEL
Sbjct: 130 EEALTRAEAPLREFMIKQTREKDLALFVGLSQIPQPKTYR----DIPTYVLVPSFVISEL 185
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF I +PF+IIDMIVA+ +M+MGMMMLPP ISLPFK++ FV++DGW L+V++L
Sbjct: 186 KTAFQIGFAIFIPFMIIDMIVASTLMSMGMMMLPPMMISLPFKILLFVIVDGWYLIVQSL 245
Query: 242 VKSF 245
V SF
Sbjct: 246 VASF 249
>gi|77918770|ref|YP_356585.1| flagellar biosynthesis protein FliP [Pelobacter carbinolicus DSM
2380]
gi|77544853|gb|ABA88415.1| flagellar biosynthetic protein FliP [Pelobacter carbinolicus DSM
2380]
Length = 248
Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats.
Identities = 101/243 (41%), Positives = 152/243 (62%), Gaps = 6/243 (2%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSI--STWIVRTFGIFTILSIAPILLIMVTCF 62
L +V P V A+ + + + +++ I T+LS+AP +L+M T F
Sbjct: 7 IVLMLLIVLPASVMAEPVPAITIGLGQAGGQAPPSTLMQILLIMTVLSVAPAILLMTTAF 66
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R +V S LR MG +PPN VII L+LF+TF+VMSP ++ + +QP + +I +
Sbjct: 67 IRLAVVLSFLRQAMGTQQMPPNQVIIGLSLFLTFFVMSPVFNQINDQAVQPYLTQKIDQK 126
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
A+ EP FM + T E +LSL M+++ + + LIP+FM+SEL+
Sbjct: 127 QALTLAVEPMRQFMFSQTTESELSLLMEISGHPDPAGK----EDVPTLTLIPAFMLSELK 182
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
R+F+IGF+I +PFL+IDMIVA+++M+MGMMMLPP ISLPFK++ FVL+DGW+L+V +LV
Sbjct: 183 RAFQIGFMIYIPFLVIDMIVASVLMSMGMMMLPPIIISLPFKLLLFVLVDGWTLIVGSLV 242
Query: 243 KSF 245
+SF
Sbjct: 243 QSF 245
>gi|68343342|gb|AAY90948.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens Pf-5]
Length = 241
Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 136/224 (60%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + + ++ I T LS P ++++T F R IIVFSILR +G+
Sbjct: 19 PAITLGTNASGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQT 78
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N ++ +ALF+T ++M+P DR + +QP + ++T A+ + P FM TR
Sbjct: 79 PSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTR 138
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL LFM ++ TDI D IL+P+F+ SEL+ +F+IGF+I +PFLIID++
Sbjct: 139 SSDLELFMRLSKR----TDIASPDQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLV 194
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 195 VASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 238
>gi|257484903|ref|ZP_05638944.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289629020|ref|ZP_06461974.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289651610|ref|ZP_06482953.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298487821|ref|ZP_07005861.1| Flagellar biosynthesis protein fliP [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298157546|gb|EFH98626.1| Flagellar biosynthesis protein fliP [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330866458|gb|EGH01167.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330986502|gb|EGH84605.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011077|gb|EGH91133.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 250
Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats.
Identities = 98/248 (39%), Positives = 146/248 (58%), Gaps = 8/248 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSL----HDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
+R+ L ++ V A L + N + ++ I T LS P ++
Sbjct: 4 LRFVILLLLVMVTPAVLAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVM 63
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP +
Sbjct: 64 LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAE 123
Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
++T A+ + P FM TR DL LFM ++ TDI D IL+P+F+
Sbjct: 124 KLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKR----TDIPTPDAAPLTILVPAFV 179
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+
Sbjct: 180 ISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 239
Query: 238 VENLVKSF 245
V L SF
Sbjct: 240 VGTLAGSF 247
>gi|330880585|gb|EGH14734.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 226
Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats.
Identities = 92/224 (41%), Positives = 137/224 (61%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ N + ++ I T LS P ++++T F R IIVFSILR +G+
Sbjct: 4 PAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQT 63
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N ++ +ALF+T ++M+P DR + +QP + +++ A+ + P FM TR
Sbjct: 64 PSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTR 123
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL LFM ++ TDI D IL+P+F+ISEL+ +F+IGF+I +PFLIID++
Sbjct: 124 TSDLELFMRLSKR----TDIPTPDAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLV 179
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF
Sbjct: 180 VASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 223
>gi|332533116|ref|ZP_08408985.1| flagellar biosynthetic protein FliP [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037398|gb|EGI73852.1| flagellar biosynthetic protein FliP [Pseudoalteromonas haloplanktis
ANT/505]
Length = 246
Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats.
Identities = 85/242 (35%), Positives = 134/242 (55%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ P + + + ++ I T LS P +IM+T F
Sbjct: 5 LLIIFAMVFVPNVSAEGIDALTITTNADGTQDYSVTLQVLAIMTALSFIPAAIIMMTSFT 64
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R I+V +ILR +G+ P N V++ ++LF++ ++M+P + E I+P +N Q+T
Sbjct: 65 RIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIMAPIYQQVNERAIEPYLNEQVTSVE 124
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A++ EP FM + R KDL F +A + +LIP+F+ SEL+
Sbjct: 125 ALELAKEPMKAFMLSQVRLKDLETFAKIAGY----DQLNSPQDTPLIVLIPAFVTSELQT 180
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F IGF+ +PFLI+D++VA+++MAMGMMML P +SLPFK++ FVL+DGWSL++ L K
Sbjct: 181 AFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLAK 240
Query: 244 SF 245
SF
Sbjct: 241 SF 242
>gi|103488403|ref|YP_617964.1| flagellar biosynthesis protein FliP [Sphingopyxis alaskensis
RB2256]
gi|98978480|gb|ABF54631.1| flagellar biosynthetic protein FliP [Sphingopyxis alaskensis
RB2256]
Length = 256
Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats.
Identities = 88/221 (39%), Positives = 136/221 (61%), Gaps = 4/221 (1%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
V I D + ++ + ++L++ P LL+M+T F R IIV SILR +G+ PPN
Sbjct: 38 AVNEIGGDGRPLSLSLQILVLMSLLTVLPSLLLMMTSFTRIIIVLSILRHALGLQQTPPN 97
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
V++ L+LF++ +VM P + + I+P QI A+ R + FM TR+ D
Sbjct: 98 QVLVGLSLFLSLFVMQPVISEVNRVAIEPYGQEQIDIGEAVSRSGDALHGFMMKQTRKTD 157
Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
L +F +A + + + IL+P+F+ SEL+ +F+IGFLI LPFL+ID+IVA+
Sbjct: 158 LMMFAKIARAP----AYASPKDVPFSILLPAFVTSELKTAFQIGFLIFLPFLVIDLIVAS 213
Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+M++GMMML PT IS+PFK++ FVL+DGW+L + +L SF
Sbjct: 214 ALMSLGMMMLSPTIISMPFKLLLFVLVDGWALTMGSLAASF 254
>gi|330961233|gb|EGH61493.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 250
Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats.
Identities = 98/248 (39%), Positives = 146/248 (58%), Gaps = 8/248 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSL----HDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
+R+ L ++ V A L + N + ++ I T LS P ++
Sbjct: 4 LRFLIPLLLVMVAPSVLAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVM 63
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP +
Sbjct: 64 LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAE 123
Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
++T A+ + P FM TR DL LFM ++ TDI D IL+P+F+
Sbjct: 124 KLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKR----TDIPTPDAAPLTILVPAFV 179
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+
Sbjct: 180 ISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 239
Query: 238 VENLVKSF 245
V L SF
Sbjct: 240 VGTLAGSF 247
>gi|158422252|ref|YP_001523544.1| flagellar biosynthetic FliP protein [Azorhizobium caulinodans ORS
571]
gi|158329141|dbj|BAF86626.1| flagellar biosynthetic FliP protein [Azorhizobium caulinodans ORS
571]
Length = 292
Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats.
Identities = 126/248 (50%), Positives = 165/248 (66%), Gaps = 22/248 (8%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
+ D + ++S I++ + T+LSIAP LLIMVT F RF+I S LR+G+G+
Sbjct: 44 QIPSLDSLLGDNGGAVSGRIIQMVMVLTVLSIAPGLLIMVTSFTRFVIALSFLRSGLGLS 103
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
S P NLV+ISL+LFMTFYVM PT D++ G++PL +ITE A +++EPF FM +
Sbjct: 104 STPANLVLISLSLFMTFYVMGPTFDKAWTEGVRPLTERKITEEEAFTKISEPFREFMLSQ 163
Query: 140 TREKDLSLFMDMAH----------------------SSHRNTDITKNDHIEYRILIPSFM 177
R KDL LF D+A S +R+ + IE RILIP+FM
Sbjct: 164 VRPKDLRLFADIAAATGRPSKNDPETAAQNNSAPATSPNRDQNAQPERQIELRILIPAFM 223
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
ISELRR FEIGFLIILPFLIIDMIVAT+VM+MGMMM+ P +++LPFK++FFVLIDGW++L
Sbjct: 224 ISELRRGFEIGFLIILPFLIIDMIVATLVMSMGMMMMSPAALALPFKILFFVLIDGWNIL 283
Query: 238 VENLVKSF 245
V LV+SF
Sbjct: 284 VSGLVRSF 291
>gi|52080238|ref|YP_079029.1| flagellar biosynthesis protein FliP [Bacillus licheniformis ATCC
14580]
gi|52785615|ref|YP_091444.1| flagellar biosynthesis protein FliP [Bacillus licheniformis ATCC
14580]
gi|319645983|ref|ZP_08000213.1| FliP protein [Bacillus sp. BT1B_CT2]
gi|52003449|gb|AAU23391.1| flagellar protein [Bacillus licheniformis ATCC 14580]
gi|52348117|gb|AAU40751.1| FliP [Bacillus licheniformis ATCC 14580]
gi|317391733|gb|EFV72530.1| FliP protein [Bacillus sp. BT1B_CT2]
Length = 221
Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats.
Identities = 100/217 (46%), Positives = 148/217 (68%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+D + + VR + T+ SIAP +LI++TCF R +IV S +RT + S+PPN V+I
Sbjct: 9 NSSDAANVSASVRLLLLLTVFSIAPGILILMTCFTRVVIVLSFVRTSLATQSMPPNQVLI 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF++M PT + + PLMNN+IT A + P FM +TR+KDL+LF
Sbjct: 69 GLALFLTFFIMGPTFSEINKEALTPLMNNKITLDEAYTKAEAPIKTFMSKHTRQKDLALF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
M+ A + I ++P+F+ISEL+ +F++GF+I +PFLIIDM+VA+++M+
Sbjct: 129 MNYAKMETP----ESINDIPLSTMVPAFVISELKTAFQMGFMIFIPFLIIDMVVASVLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
>gi|312884811|ref|ZP_07744503.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367463|gb|EFP95023.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 251
Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats.
Identities = 85/243 (34%), Positives = 135/243 (55%), Gaps = 6/243 (2%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSI--STWIVRTFGIFTILSIAPILLIMVTCF 62
+ L+ P L A S + ++ + + ++ + T LS P ++M T F
Sbjct: 12 IIGGIVLLCPFLAIASDSGLTLFSVTDGETQQEYSVKLQILLLMTALSFLPAFILMATSF 71
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R I+V +ILR +G+ PPN V++ +AL +T +M P + P IT +
Sbjct: 72 TRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWSDIHQNAFLPYEAGTITLS 131
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
A +P FM T++ L M +A+ T D I + +++P+F+ISEL+
Sbjct: 132 QAFSIAEKPVRQFMLRQTQQNSLEQMMRIANEP----MDTSLDDISFAVILPAFVISELK 187
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V L
Sbjct: 188 TAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTLS 247
Query: 243 KSF 245
SF
Sbjct: 248 ASF 250
>gi|90422616|ref|YP_530986.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
BisB18]
gi|90104630|gb|ABD86667.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
BisB18]
Length = 248
Score = 198 bits (503), Expect = 8e-49, Method: Composition-based stats.
Identities = 120/227 (52%), Positives = 164/227 (72%), Gaps = 2/227 (0%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
+ + P S S I++ + T+LS+AP LLIMVT F RF++ S LRTG+G+
Sbjct: 24 QMPDLSTLIPPGGGSASGRIIQMVALLTVLSLAPGLLIMVTSFTRFVVALSFLRTGLGLQ 83
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
+ P N+V+ISLALF+TFYVM+PT DR+ G+QPLM N+ITE A RV EPF FM +
Sbjct: 84 TTPANIVMISLALFLTFYVMAPTFDRAWRDGLQPLMQNEITEKEAYSRVTEPFREFMLAH 143
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
R+KDL F +A S R + + ++ R++IP+FM+SELRR+FEIGFLI++PFL+ID
Sbjct: 144 VRDKDLQTFESLAAESLRIRP--EGEKVDLRVIIPAFMVSELRRAFEIGFLIVMPFLVID 201
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+VAT+ M+MGMMM+PPT +LPFKV+FFVLIDGW+LL LV+S++
Sbjct: 202 MVVATLTMSMGMMMMPPTVFALPFKVLFFVLIDGWNLLAVGLVRSYL 248
>gi|225850263|ref|YP_002730497.1| flagellar biosynthetic protein FliP [Persephonella marina EX-H1]
gi|225646564|gb|ACO04750.1| flagellar biosynthetic protein FliP [Persephonella marina EX-H1]
Length = 222
Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats.
Identities = 101/212 (47%), Positives = 141/212 (66%), Gaps = 5/212 (2%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ ++ + TILS+AP +LI VT F R +IV S+LR +G+ PPN VII+ +LF
Sbjct: 15 NNLDITLKILFLITILSLAPSILITVTAFVRIVIVLSLLRHALGIPQSPPNQVIIAFSLF 74
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
+TF+VM P D IQP + +I + AI+R EP FM NTR++DL LF+D+A
Sbjct: 75 LTFFVMKPVFDDINGNAIQPYLKKEIGDMEAIERAKEPVKKFMLKNTRKEDLKLFLDIAG 134
Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
+ D + LIP+FMISE++ +FEI F+I LPFLIIDM+VA+I+M+MGMMM
Sbjct: 135 EKPK-----SPDEVSMVSLIPAFMISEIKTAFEIVFIIFLPFLIIDMLVASILMSMGMMM 189
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PP ISLPFK+I FVL DG+ LL + L++S+
Sbjct: 190 IPPMLISLPFKLILFVLADGFELLTKALIQSY 221
>gi|254506844|ref|ZP_05118983.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus 16]
gi|219550129|gb|EED27115.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus 16]
Length = 244
Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats.
Identities = 89/224 (39%), Positives = 140/224 (62%), Gaps = 5/224 (2%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++ + T+L P ++I++T F R ++V SILR MG+
Sbjct: 24 PAFTMTTNADGSEDYSVNLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQT 83
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N VII +A+F+TF++MSP L++ ++ +QP +N QIT A P FM TR
Sbjct: 84 PSNQVIIGIAIFLTFFIMSPVLNKINDVAVQPYINEQITAREAFDLAQAPMKDFMLKQTR 143
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KDL F++++ S+ T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++
Sbjct: 144 VKDLETFVNISGST-----ATAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLV 198
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 199 VASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 242
>gi|119469996|ref|ZP_01612801.1| flagellar biosynthesis protein P [Alteromonadales bacterium TW-7]
gi|119446706|gb|EAW27979.1| flagellar biosynthesis protein P [Alteromonadales bacterium TW-7]
Length = 246
Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats.
Identities = 84/242 (34%), Positives = 136/242 (56%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ P + + + ++ I T LS P +IM+T F
Sbjct: 5 LLIIFAIVFVPSVSAEGIDALTITTNADGTQDYSVTLQVLAIMTALSFIPAAIIMMTSFT 64
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R I+V +ILR +G+ P N V++ ++LF++ ++M+P + ++ I+P +N Q+T
Sbjct: 65 RIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIMAPIYQKVNDVAIEPYLNEQVTSVQ 124
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A++ EP FM + R KDL F +A + + +LIP+F+ SEL+
Sbjct: 125 ALELAKEPMKAFMLSQVRLKDLETFAKIAGYDK----LESPEETPLIVLIPAFVTSELQT 180
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F IGF+ +PFLI+D++VA+++MAMGMMML P +SLPFK++ FVL+DGWSL++ L K
Sbjct: 181 AFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLAK 240
Query: 244 SF 245
SF
Sbjct: 241 SF 242
>gi|119476307|ref|ZP_01616658.1| flagellar biosynthesis protein [marine gamma proteobacterium
HTCC2143]
gi|119450171|gb|EAW31406.1| flagellar biosynthesis protein [marine gamma proteobacterium
HTCC2143]
Length = 270
Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats.
Identities = 88/232 (37%), Positives = 143/232 (61%), Gaps = 4/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
V + T ++ + T+L++ P L+M+T F R I+V +ILR
Sbjct: 41 AAKAVPGIPAMTVTTNASGGQDYTVTIQILAVMTVLTLLPSFLMMMTAFTRVIVVLAILR 100
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+G+ S P N +I+ LA+F+T ++M P +++ +QP MN +IT AI ++PF
Sbjct: 101 QAIGLQSTPSNQIILGLAIFLTIFIMLPVFEQANTQALQPYMNEKITSLEAIDAASKPFH 160
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM + TRE DL LFM ++++ T I + + +L P+F+ SEL+ +F++GF++ +
Sbjct: 161 EFMLSQTRETDLDLFMRISNT----TGIQTPEETPFFVLAPAFLTSELKTAFQMGFVLFI 216
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFL+ID++VA+++MAMGMMML P ISLPFK++ FVL+DGW ++V L S+
Sbjct: 217 PFLVIDLVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWVMIVGTLAASY 268
>gi|150390469|ref|YP_001320518.1| flagellar biosynthetic protein FliP [Alkaliphilus metalliredigens
QYMF]
gi|149950331|gb|ABR48859.1| flagellar biosynthetic protein FliP [Alkaliphilus metalliredigens
QYMF]
Length = 267
Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 145/245 (59%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+ F S+ + + ++ + TILSIAP +LIM+T
Sbjct: 26 LFIIVMMTSSTQAQPNTFPIPSIGINVEEADNPQEVAASLQILFLLTILSIAPAILIMMT 85
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R +IV S LR + PP +II LALF+TF+ M+P +QP + ++
Sbjct: 86 SFTRIVIVLSFLRNAIATQQTPPTQIIIGLALFLTFFTMAPIATDINTNALQPYLAEELG 145
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A++R EP FM TREKDL+LF+++++S T+ I LIP+F+ISE
Sbjct: 146 QEEALERAMEPIREFMFRQTREKDLALFIEVSNSEMP----TEVADIATSTLIPAFIISE 201
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F++GF++ +PF++IDM+VA+ +MAMGMMMLPP ISLPFK++ F+++DGW++LV
Sbjct: 202 LKTAFQMGFILFIPFIVIDMVVASTLMAMGMMMLPPAMISLPFKLLLFIMVDGWNILVRA 261
Query: 241 LVKSF 245
L+ SF
Sbjct: 262 LIMSF 266
>gi|161501973|ref|YP_258777.2| flagellar biosynthesis protein FliP [Pseudomonas fluorescens Pf-5]
Length = 249
Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats.
Identities = 90/224 (40%), Positives = 136/224 (60%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + + ++ I T LS P ++++T F R IIVFSILR +G+
Sbjct: 27 PAITLGTNASGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQT 86
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N ++ +ALF+T ++M+P DR + +QP + ++T A+ + P FM TR
Sbjct: 87 PSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTR 146
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL LFM ++ TDI D IL+P+F+ SEL+ +F+IGF+I +PFLIID++
Sbjct: 147 SSDLELFMRLSKR----TDIASPDQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLV 202
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 203 VASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 246
>gi|302185375|ref|ZP_07262048.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
syringae 642]
Length = 250
Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats.
Identities = 96/239 (40%), Positives = 143/239 (59%), Gaps = 7/239 (2%)
Query: 10 FLVTPELVFAKSSLHDVM---NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
+VTP + A + N + ++ I T LS P ++++T F R I
Sbjct: 13 VMVTPAALAADPLSIPAITLSNGTDGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + +++ A+
Sbjct: 73 IVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
+ P FM TR DL LFM ++ TDI D IL+P+F+ISEL+ +F+
Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLSKR----TDIPTPDAAPLTILVPAFVISELKTAFQ 188
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF
Sbjct: 189 IGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247
>gi|302874603|ref|YP_003843236.1| flagellar biosynthetic protein FliP [Clostridium cellulovorans
743B]
gi|307690786|ref|ZP_07633232.1| flagellar biosynthesis protein FliP [Clostridium cellulovorans
743B]
gi|302577460|gb|ADL51472.1| flagellar biosynthetic protein FliP [Clostridium cellulovorans
743B]
Length = 257
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 92/252 (36%), Positives = 152/252 (60%), Gaps = 11/252 (4%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI-------PADLSISTWIVRTFGIFTILSIAP 53
++ + L + + + A ++ + NI + ++ + T LS+ P
Sbjct: 9 VLVFLLAILVVKSQYVSAATTNTMPIPNINLTVDGKSSSPQEYVDNIKLLLVLTALSLLP 68
Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113
+L+ +T F R IV S L+ +G PP+ V+I L+LF+TF+VMSPT+ + +QP
Sbjct: 69 SILLTMTSFTRISIVLSFLKNAIGTQQTPPSQVLIGLSLFLTFFVMSPTISKVNTNALQP 128
Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
+NNQI++ AI FM TR+KDL LF D+ + + TK + ++ ++I
Sbjct: 129 YLNNQISQQQAIDIGTTEMKTFMLKQTRKKDLKLFRDIRGVA----EETKPEDLKMEVVI 184
Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
PSF+ISEL+ +F IGF I +PFLIID +VA+++M+MGM M+ P +S+PFK++ F+++DG
Sbjct: 185 PSFIISELKTAFTIGFFIYIPFLIIDFVVASVLMSMGMFMISPMMVSIPFKILLFIMVDG 244
Query: 234 WSLLVENLVKSF 245
W+L+V++LV SF
Sbjct: 245 WNLIVKSLVLSF 256
>gi|148976243|ref|ZP_01812967.1| putative flagellar assembly protein [Vibrionales bacterium SWAT-3]
gi|145964337|gb|EDK29592.1| putative flagellar assembly protein [Vibrionales bacterium SWAT-3]
Length = 246
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 79/242 (32%), Positives = 135/242 (55%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
F + A+ +D + + ++ + T+LS P +IM T F
Sbjct: 5 IFFTLALALFAGASHAEGLTILSETTTSDGTEYSIKLQILILMTLLSFVPAFVIMCTSFT 64
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R +IV +ILR +G+ PPN V++ +AL T +M P + + P +++T
Sbjct: 65 RIVIVLAILRQALGLQQTPPNQVLVGIALIFTLLIMRPVWTKIYDTAYIPYSKDEVTLME 124
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A+ +P +M + T+ K L +A T I + I + +L+P++++SEL+
Sbjct: 125 ALATAEKPLRRYMLDQTQRKALEQVSKIAG----ETAIESDQDIPFLVLLPAYLLSELKA 180
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF++ LPFL+ID++VA+++M+MGMMML P +SLPFK++ FV++DGW LL+ +L
Sbjct: 181 AFQIGFMLFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFKLLVFVIVDGWGLLMGSLAN 240
Query: 244 SF 245
SF
Sbjct: 241 SF 242
>gi|15615005|ref|NP_243308.1| flagellar biosynthesis protein FliP [Bacillus halodurans C-125]
gi|10175062|dbj|BAB06161.1| flagellar protein required for flagellar formation [Bacillus
halodurans C-125]
Length = 233
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 100/226 (44%), Positives = 148/226 (65%), Gaps = 4/226 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
+ D + D + V+ + T+LS+AP +LI++TCF R +IV S +RTG+
Sbjct: 11 QLPGLDPEFMTDDPAGVATTVQLLLLLTVLSLAPSILILMTCFTRVVIVLSFVRTGLATQ 70
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
++PPN VII +ALF+TF++M+P + + P ++ +I + A+ R A P FM +
Sbjct: 71 TMPPNQVIIGIALFITFFIMAPVFAEVNDQALTPFLDGEIDQQEAMDRAAIPMKEFMAKH 130
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TREKDL+LFM A + I L+P+F ISEL+ +F+IGFLI +PFL+ID
Sbjct: 131 TREKDLALFMGYAGHDRP----ESIEDIPLTALVPAFAISELKTAFQIGFLIFIPFLVID 186
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MIVA+++M+MGMMMLPP ISLPFK++ FVL+DGW L+V++L+ SF
Sbjct: 187 MIVASVLMSMGMMMLPPIMISLPFKILLFVLVDGWYLVVQSLLLSF 232
>gi|149189860|ref|ZP_01868140.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
gi|148836346|gb|EDL53303.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
Length = 261
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 82/246 (33%), Positives = 133/246 (54%), Gaps = 5/246 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVM-NIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
++ + + A + L + N + ++ + T LS P ++M
Sbjct: 17 LLIGLVIVMLGLFAHPALADNGLTFLTVNDGQSEQEYSVKLQILLLMTALSFLPAFILMA 76
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R I+V +ILR +G+ PPN V+I +AL ++ +M P E P +I
Sbjct: 77 TSFTRIIVVLAILRQALGLQQSPPNRVLIGIALSLSILIMRPVWSDVYEHAFVPYDQGEI 136
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
T A +P FM T+ L + +A+ +K + I + I++P+F+IS
Sbjct: 137 TLMQAFATAEKPVRNFMLAQTQRNSLEQMLRIANEPVD----SKVEDISFAIVLPAFVIS 192
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGW++ V
Sbjct: 193 ELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVG 252
Query: 240 NLVKSF 245
L SF
Sbjct: 253 TLSASF 258
>gi|313682238|ref|YP_004059976.1| flagellar biosynthetic protein flip [Sulfuricurvum kujiense DSM
16994]
gi|313155098|gb|ADR33776.1| flagellar biosynthetic protein FliP [Sulfuricurvum kujiense DSM
16994]
Length = 244
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 98/243 (40%), Positives = 152/243 (62%), Gaps = 4/243 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + F + L+ +++ + P + + + T+L +AP L++++T
Sbjct: 4 LAFFLFMIPLMLWGADPQVPAMNFNLTAPETPAEVVSSLNVLLVLTVLFLAPSLVLVMTT 63
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F RF+IVF LR +G VPP +++ LAL +T +VM P ++ + GI+P +IT
Sbjct: 64 FTRFVIVFGFLRQALGTQQVPPTQLLVMLALILTVFVMEPVATKAYDEGIKPYSEEKITY 123
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A ++ EPF FM NTREKDL+LF+ + H + + I+IP+FMISEL
Sbjct: 124 DEAFEKTTEPFKNFMVRNTREKDLALFLRIRHMQNP----QSIKEVPLTIVIPAFMISEL 179
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP IS+PFK++ FV++DGW+LL+ NL
Sbjct: 180 KTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMISMPFKILVFVMVDGWNLLIGNL 239
Query: 242 VKS 244
+ S
Sbjct: 240 IAS 242
>gi|330953762|gb|EGH54022.1| flagellar biosynthesis protein FliP [Pseudomonas syringae Cit 7]
Length = 250
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 96/239 (40%), Positives = 143/239 (59%), Gaps = 7/239 (2%)
Query: 10 FLVTPELVFAKSSLHDVM---NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
+VTP + A + N + ++ I T LS P ++++T F R I
Sbjct: 13 VMVTPAALAADPLSIQAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + +++ A+
Sbjct: 73 IVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
+ P FM TR DL LFM ++ TDI D IL+P+F+ISEL+ +F+
Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLSKR----TDIPTPDAAPLTILVPAFVISELKTAFQ 188
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF
Sbjct: 189 IGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247
>gi|52842016|ref|YP_095815.1| flagellar biosynthesis protein FliP [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|296107380|ref|YP_003619080.1| flagellar biosynthetic protein FliP [Legionella pneumophila 2300/99
Alcoy]
gi|52629127|gb|AAU27868.1| flagellar biosynthetic protein FliP [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|295649281|gb|ADG25128.1| flagellar biosynthetic protein FliP [Legionella pneumophila 2300/99
Alcoy]
gi|307610489|emb|CBX00061.1| flagellar biosynthetic protein FliP [Legionella pneumophila 130b]
Length = 249
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 95/217 (43%), Positives = 140/217 (64%), Gaps = 5/217 (2%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ ++ T+L++ P LL+ +T F R IIV SILR +GM P N ++I
Sbjct: 35 GTDGSQSYSINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILI 94
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
+ALFMT++VMSP ++ E IQP MN +I + A+ +P FM N TR+ DLSLF
Sbjct: 95 GIALFMTYFVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPLRQFMLNQTRKNDLSLF 154
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
AH+ + D I +LIP+F+ SEL+ +F+IGF++ LPFLIID++V++++MA
Sbjct: 155 EKFAHNVPK-----SLDEIPMSVLIPAFITSELKTAFQIGFILFLPFLIIDLVVSSVLMA 209
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMML P ISLPFK++ FV++DGW+L++ +L SF
Sbjct: 210 MGMMMLSPLIISLPFKIMLFVMVDGWTLVLGSLASSF 246
>gi|330972449|gb|EGH72515.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 250
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 97/239 (40%), Positives = 143/239 (59%), Gaps = 7/239 (2%)
Query: 10 FLVTPELVFAKSSLHDVM---NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
+VTP + A + N + ++ I T LS P ++++T F R I
Sbjct: 13 VMVTPAALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + +++ A+
Sbjct: 73 IVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
+ P FM TR DL LFM ++ TDI D IL+P+F+ISEL+ +F+
Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLSKR----TDIPTPDAAPLTILVPAFVISELKTAFQ 188
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF
Sbjct: 189 IGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247
>gi|66046673|ref|YP_236514.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
syringae B728a]
gi|289678972|ref|ZP_06499862.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
syringae FF5]
gi|63257380|gb|AAY38476.1| Flagellar transport protein FliP [Pseudomonas syringae pv. syringae
B728a]
gi|330899441|gb|EGH30860.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330976008|gb|EGH76074.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 250
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 96/239 (40%), Positives = 143/239 (59%), Gaps = 7/239 (2%)
Query: 10 FLVTPELVFAKSSLHDVM---NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
+VTP + A + N + ++ I T LS P ++++T F R I
Sbjct: 13 VMVTPAALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + +++ A+
Sbjct: 73 IVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
+ P FM TR DL LFM ++ TDI D IL+P+F+ISEL+ +F+
Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLSKR----TDIPTPDAAPLTILVPAFVISELKTAFQ 188
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF
Sbjct: 189 IGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247
>gi|115377840|ref|ZP_01465028.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella
aurantiaca DW4/3-1]
gi|310820307|ref|YP_003952665.1| type III secretion system inner membrane p family protein
[Stigmatella aurantiaca DW4/3-1]
gi|115365172|gb|EAU64219.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella
aurantiaca DW4/3-1]
gi|309393379|gb|ADO70838.1| Type III secretion system inner membrane P family protein
[Stigmatella aurantiaca DW4/3-1]
Length = 277
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 81/264 (30%), Positives = 138/264 (52%), Gaps = 18/264 (6%)
Query: 1 MIRYCFFALFLVTPELVFAK---------SSLHDVMNIPADLSISTWIVRTFGIFTILSI 51
+I + F + P + A+ V ++ S ++ + LS+
Sbjct: 14 IIPWLFATTVALQPAVALAQRRRGGGDDPIPDSVVQAATSNESFASRPLILILALAALSL 73
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
P +L+MVT F + +V SI+R+ +G +PP VI LA+ +T Y+M+P +
Sbjct: 74 VPFMLMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGQEMYKAAK 133
Query: 112 QPLMNNQITET---------TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
+ + A R EP F+ + KD +LF +A + D
Sbjct: 134 VDIWAKGPSLLSSETVGTLLEAADRSKEPLRDFLVKKVKNKDRALFFHLAKKMRKAEDRK 193
Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
++ I+IP+F++SEL+ +F+IGFL+ +PF++IDM+VA I++A+GM ML PT+IS+P
Sbjct: 194 DIGDRDFMIIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTISMP 253
Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246
FK++ FVL+DGW L+ + LV ++
Sbjct: 254 FKLLLFVLVDGWYLIAKGLVVGYL 277
>gi|148359333|ref|YP_001250540.1| flagellar biosynthetic protein FliP [Legionella pneumophila str.
Corby]
gi|148281106|gb|ABQ55194.1| flagellar biosynthetic protein FliP [Legionella pneumophila str.
Corby]
Length = 249
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 95/217 (43%), Positives = 140/217 (64%), Gaps = 5/217 (2%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ ++ T+L++ P LL+ +T F R IIV SILR +GM P N ++I
Sbjct: 35 GTNGSQSYSINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILI 94
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
+ALFMT++VMSP ++ E IQP MN +I + A+ +P FM N TR+ DLSLF
Sbjct: 95 GIALFMTYFVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPLRQFMLNQTRKNDLSLF 154
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
AH+ + D I +LIP+F+ SEL+ +F+IGF++ LPFLIID++V++++MA
Sbjct: 155 EKFAHNVPK-----SLDEIPMSVLIPAFITSELKTAFQIGFILFLPFLIIDLVVSSVLMA 209
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMML P ISLPFK++ FV++DGW+L++ +L SF
Sbjct: 210 MGMMMLSPLIISLPFKIMLFVMVDGWTLVLGSLASSF 246
>gi|300024600|ref|YP_003757211.1| flagellar biosynthetic protein FliP [Hyphomicrobium denitrificans
ATCC 51888]
gi|299526421|gb|ADJ24890.1| flagellar biosynthetic protein FliP [Hyphomicrobium denitrificans
ATCC 51888]
Length = 247
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 115/235 (48%), Positives = 166/235 (70%), Gaps = 2/235 (0%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
V P A++ + + D S+S IV+ + T+LS+AP LL+MVT F RF+I S
Sbjct: 15 VMPTAALAQTIDLNTLFPAGDASVSGRIVQLLVVMTVLSVAPGLLMMVTSFARFVIALSF 74
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LR+G+G+ + P N++++SLALFMT +VM+PT + + G++P++ N+I++ QR EP
Sbjct: 75 LRSGLGLQTTPSNMILVSLALFMTMFVMAPTFQAAWDNGVKPMVENKISQEEGYQRTTEP 134
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
F FM+ N REKD+++F D++ + D R+LIP+FM+SELRR FEIGFL+
Sbjct: 135 FRAFMKANVREKDIAIFQDLSAERFGEANKAGPDD--LRVLIPAFMVSELRRGFEIGFLV 192
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
LPFL+ID++VATI+ +MGMMM+PPT +SLP K++FFVL+DGWSLLV LVKSFI
Sbjct: 193 TLPFLVIDLVVATIMTSMGMMMMPPTVVSLPLKILFFVLVDGWSLLVGALVKSFI 247
>gi|254462066|ref|ZP_05075482.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium
HTCC2083]
gi|206678655|gb|EDZ43142.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
HTCC2083]
Length = 256
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 92/247 (37%), Positives = 152/247 (61%), Gaps = 9/247 (3%)
Query: 5 CFFALFLVTPELVFAKSSL-----HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
+ P + A++++ +V + + ++ + T L+I P L+ +
Sbjct: 13 LALVSAALVPSISLAQTAVEGMPALNVTTGADGETQYSLSLQILALMTALTILPSFLLGI 72
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIV SILR MG PPN V+IS+ALF+TFY+M+PT ++ E I P +N Q+
Sbjct: 73 TAFTRVIIVLSILRQAMGTQQTPPNQVLISIALFLTFYIMAPTFEQIYEKAISPYLNGQM 132
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
AI+ A F+ NTRE +L++F +MA + N+ + Y +L+P+F+ S
Sbjct: 133 QPVAAIETGAAILSEFLILNTRESELAMFAEMAG----DAPYESNEDVPYTVLMPAFITS 188
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +F+IGFL+ LPFL+ID+++A+I+MA+GMMML P +SLPFK++ FVL+DGW++ +
Sbjct: 189 ELKTAFQIGFLLFLPFLVIDLVIASILMALGMMMLSPMLVSLPFKLLLFVLVDGWAMTIG 248
Query: 240 NLVKSFI 246
++ +++
Sbjct: 249 SIASTYV 255
>gi|304404260|ref|ZP_07385922.1| flagellar biosynthetic protein FliP [Paenibacillus curdlanolyticus
YK9]
gi|304347238|gb|EFM13070.1| flagellar biosynthetic protein FliP [Paenibacillus curdlanolyticus
YK9]
Length = 256
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 94/208 (45%), Positives = 142/208 (68%), Gaps = 4/208 (1%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
V + T+LS+AP +L+++T F R +IV +RT +G +PPN V+I LA+F+TF+
Sbjct: 50 SAVSILLLLTVLSVAPAILVLMTSFTRIVIVLGFVRTSLGTQQMPPNQVLIGLAMFLTFF 109
Query: 98 VMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
VM+PTL + ++ +QP + +IT+ A + A P FM + TREKDL LFM +
Sbjct: 110 VMAPTLSQVNQVALQPYLKGEITQMQAFDKAAVPMKKFMFSQTREKDLLLFMKYTKTEKP 169
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ I +L+P++ ISEL+ +F++GF+I +PFLIIDM+V++ +MAMGMMMLPP
Sbjct: 170 K----SYEDIPITVLVPAYAISELKTAFQMGFMIFIPFLIIDMVVSSTLMAMGMMMLPPV 225
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
ISLPFK++ FVL+DGW L+V++L+ SF
Sbjct: 226 MISLPFKILLFVLVDGWYLIVKSLLISF 253
>gi|237799248|ref|ZP_04587709.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331022103|gb|EGI02160.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 250
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 96/248 (38%), Positives = 146/248 (58%), Gaps = 8/248 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSL----HDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
+R+ + ++ V A L + N + ++ I T LS P ++
Sbjct: 4 LRFLILLMLVMVAPAVLAADPLSIPAITLSNSTDGQQEYSVSLQILLIMTALSFIPAFVM 63
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP +
Sbjct: 64 LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAE 123
Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
+++ A+ + P FM TR DL LFM ++ TDI D IL+P+F+
Sbjct: 124 KLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKR----TDIPTPDAAPLTILVPAFV 179
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+
Sbjct: 180 ISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 239
Query: 238 VENLVKSF 245
V L SF
Sbjct: 240 VGTLAGSF 247
>gi|257866390|ref|ZP_05646043.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC30]
gi|257871301|ref|ZP_05650954.1| flagellar biosynthesis protein P [Enterococcus gallinarum EG2]
gi|257873094|ref|ZP_05652747.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC10]
gi|257876003|ref|ZP_05655656.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC20]
gi|257800348|gb|EEV29376.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC30]
gi|257805465|gb|EEV34287.1| flagellar biosynthesis protein P [Enterococcus gallinarum EG2]
gi|257807258|gb|EEV36080.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC10]
gi|257810169|gb|EEV38989.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC20]
Length = 271
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 100/244 (40%), Positives = 154/244 (63%), Gaps = 6/244 (2%)
Query: 5 CFFALFLVTPELVFA---KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
L+ P+ FA + + N+ ++ + S+ + TF + T+LS+ P+LLIM+T
Sbjct: 30 AVLFSSLMLPQTAFALDTEDVSSTINNLLSNGNGSSDTINTFLLLTLLSLLPVLLIMMTS 89
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+V S +R+ +G PPN V+I LALF+TF++M P + I+P +I++
Sbjct: 90 FTRIIMVLSFVRSSLGTQQNPPNQVLIGLALFLTFFIMKPVYTDVYQQAIEPFDRQEISQ 149
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A R + FM TREKD++LF + + +D + +++P+F+ISEL
Sbjct: 150 AEAFDRSEKRIKAFMMVQTREKDIALFAEADGET---EKYHSSDDVPLTVMVPAFIISEL 206
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
R +F IGFLI +PFLIID++V++I+M+MGMMML P ISLPFK++ FVL+DGW L+VE+L
Sbjct: 207 RTAFSIGFLIFIPFLIIDLVVSSILMSMGMMMLSPIMISLPFKILLFVLVDGWYLIVESL 266
Query: 242 VKSF 245
+KSF
Sbjct: 267 IKSF 270
>gi|330940696|gb|EGH43707.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 250
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 97/239 (40%), Positives = 143/239 (59%), Gaps = 7/239 (2%)
Query: 10 FLVTPELVFAKSSLHDVM---NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
+VTP + A + N + ++ I T LS P ++++T F R I
Sbjct: 13 VMVTPAALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + +++ A+
Sbjct: 73 IVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
+ P FM TR DL LFM ++ TDI D IL+P+F+ISEL+ +F+
Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLSKR----TDIPTPDAAPLTILVPAFVISELKTAFQ 188
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF
Sbjct: 189 IGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247
>gi|237752332|ref|ZP_04582812.1| flagellar biosynthesis protein FliP [Helicobacter winghamensis ATCC
BAA-430]
gi|229375821|gb|EEO25912.1| flagellar biosynthesis protein FliP [Helicobacter winghamensis ATCC
BAA-430]
Length = 249
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 99/252 (39%), Positives = 151/252 (59%), Gaps = 11/252 (4%)
Query: 1 MIRYCFFA---LFLVTPELVFAKSSLHDVMNI----PADLSISTWIVRTFGIFTILSIAP 53
M+R F + L+ ++ +++ P + + I T+L +AP
Sbjct: 1 MLRLVFILCIGVILLFGAPPEPQAPTIPTVDLTLRAPTEPGDLVTTLNIVVILTLLVLAP 60
Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113
L++M T F R +IVFS LRT MG PP +++S AL +T ++M P E GI+P
Sbjct: 61 SLILMATSFARILIVFSFLRTAMGTQQSPPTQLLVSFALILTMFIMEPVAKEGYEKGIKP 120
Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
+ +I A R ++PF FM NTR KDL+LF + + + T + I +
Sbjct: 121 YIAKEIPYDEAFLRASQPFKDFMIRNTRPKDLALFYRIRNLENPQT----AQDVPLSIAL 176
Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
P+F+ISE++ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPPT ISLPFK++ F+L+DG
Sbjct: 177 PAFIISEMKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPTMISLPFKILIFILVDG 236
Query: 234 WSLLVENLVKSF 245
++LL NLV+SF
Sbjct: 237 FNLLTMNLVQSF 248
>gi|213612735|ref|ZP_03370561.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 206
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 93/208 (44%), Positives = 141/208 (67%), Gaps = 4/208 (1%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
V+T T L+ P +L+M+T F R IIVF +LR +G S PPN V++ LALF+TF+
Sbjct: 1 LSVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFF 60
Query: 98 VMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+MSP +D+ QP +I+ A+ + A+P FM TRE DL+LF +A+S
Sbjct: 61 IMSPVIDKIYVDAYQPFSEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG-- 118
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + + RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP
Sbjct: 119 --PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPA 176
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 177 TIALPFKLMLFVLVDGWQLLVGSLAQSF 204
>gi|172057873|ref|YP_001814333.1| flagellar biosynthetic protein FliP [Exiguobacterium sibiricum
255-15]
gi|171990394|gb|ACB61316.1| flagellar biosynthetic protein FliP [Exiguobacterium sibiricum
255-15]
Length = 222
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 88/214 (41%), Positives = 137/214 (64%), Gaps = 4/214 (1%)
Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
S + V+ + T+LS+AP LLI++TCF R I+V S +R+ +G PPN +++ L
Sbjct: 11 DTPSGTATSVKLLVLLTLLSLAPSLLILMTCFTRVIVVLSFVRSALGTQQTPPNQLLVGL 70
Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
ALF+T +VM+P L +QP M+ +I++ A + FM TR DL LF+
Sbjct: 71 ALFITLFVMAPVLTELNTTALQPYMDEKISQDEAFDQAGGTMKRFMSQYTRSNDLELFLK 130
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
+ K + I L+P++ ISEL+ +F+IGF+I +PFL+IDM+V++++M+MG
Sbjct: 131 YGNYEKP----EKVEDIPLVALVPAYAISELKTAFQIGFMIFIPFLVIDMVVSSVLMSMG 186
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
MMMLPP I+LPFK++ F+L+DGW L+VE+L+ S
Sbjct: 187 MMMLPPVMIALPFKLLLFILVDGWHLIVESLLVS 220
>gi|218288310|ref|ZP_03492609.1| flagellar biosynthetic protein FliP [Alicyclobacillus
acidocaldarius LAA1]
gi|218241669|gb|EED08842.1| flagellar biosynthetic protein FliP [Alicyclobacillus
acidocaldarius LAA1]
Length = 272
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 97/249 (38%), Positives = 151/249 (60%), Gaps = 7/249 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHD-------VMNIPADLSISTWIVRTFGIFTILSIAPILL 56
+ + P V A++S V + + V+ + T L++AP L
Sbjct: 22 WMAVFIMCFHPSFVHAQTSPSAPAIPGVSVSVGGSGPTSVANTVKIVLLLTALTLAPAAL 81
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
I++TCF R I+V S +R + + + PPN V++ LALF+T +VM PTL ++ +QP +
Sbjct: 82 ILMTCFTRVIVVLSFVRNALSLQTSPPNQVLVGLALFITLFVMQPTLQQANTQALQPYLR 141
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
QI++T AI+R PF VFM TR +DL LF+ H + + I L+P+F
Sbjct: 142 GQISQTAAIERAEAPFKVFMAKQTRAQDLELFLAYRHETLTAEMERHPEAIAMSALVPAF 201
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
+SEL+ +F+IGF+I LPFL+ID++V+T +M+MGMMMLPP ISLPFKV+ FV+++GW L
Sbjct: 202 TLSELQTAFQIGFMIYLPFLVIDLVVSTTLMSMGMMMLPPVMISLPFKVLLFVMVNGWYL 261
Query: 237 LVENLVKSF 245
+V++L+ +
Sbjct: 262 VVKSLLAGY 270
>gi|311695203|gb|ADP98076.1| flagellar biosynthesis protein FliP [marine bacterium HP15]
Length = 258
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 90/253 (35%), Positives = 148/253 (58%), Gaps = 13/253 (5%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHD--------VMNIPADLSISTWIVRTFGIFTILSIA 52
++ V L A+ + ++ + T L+
Sbjct: 9 LLPSLIVLAGFVWAPLALAQEPSGIPGIPAFTVTPGEGEGAQEYSVTLQILALMTALTFL 68
Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
P +L+M+T F R I+VF+ILR +G+ S P N +++ LALF++ ++M P L+ + + +Q
Sbjct: 69 PAMLMMMTSFTRIIVVFAILRQAIGLQSTPSNQILLGLALFLSIFIMKPVLEEANRVALQ 128
Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
P M ++T A++ ++PF FM TRE DL+LFM ++ +T + + IL
Sbjct: 129 PYMQEEVTSLEAVELASQPFRKFMLEQTRESDLALFMRIS-----DTQYETPQDVSFWIL 183
Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
+P+F+ SEL+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+D
Sbjct: 184 MPAFVTSELKTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVD 243
Query: 233 GWSLLVENLVKSF 245
GW+L++ L S+
Sbjct: 244 GWALIMGTLAASY 256
>gi|327441040|dbj|BAK17405.1| flagellar biosynthesis pathway, component FliP [Solibacillus
silvestris StLB046]
Length = 221
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 95/217 (43%), Positives = 146/217 (67%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+DL + V + T+LS+AP LLI++T F R +IV S RT + +PPN VII
Sbjct: 9 SESDLGNVSTSVTLLFLLTVLSLAPSLLILMTSFARIVIVLSFTRTALATNQMPPNQVII 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF++M+PT + E +QPL + +I A R PF FM +TR+KDL LF
Sbjct: 69 GLALFLTFFIMAPTFQQVNEQALQPLFDEEINLEEAYDRATIPFKQFMAQHTRQKDLELF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
++ + + + + I +L+P+F +SE++ +F++GF+I +PFL+IDM+VA+ +M+
Sbjct: 129 IEYNQAEYPD----SIEEIPMTLLVPAFALSEIKTAFQMGFMIFIPFLVIDMVVASTLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L++++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLVMKSLLQSF 221
>gi|24052334|gb|AAN43540.1| flagellar biosynthesis [Shigella flexneri 2a str. 301]
gi|313650170|gb|EFS14583.1| flagellar biosynthetic protein FliP [Shigella flexneri 2a str.
2457T]
gi|332757282|gb|EGJ87619.1| flagellar biosynthetic protein FliP [Shigella flexneri 2747-71]
gi|332757514|gb|EGJ87849.1| flagellar biosynthetic protein FliP [Shigella flexneri K-671]
gi|332766686|gb|EGJ96890.1| flagellar biosynthetic protein FliP [Shigella flexneri 2930-71]
gi|333017554|gb|EGK36866.1| flagellar biosynthetic protein FliP [Shigella flexneri K-304]
Length = 204
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 91/206 (44%), Positives = 141/206 (68%), Gaps = 4/206 (1%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
++T T L+ P +L+M+T F R IIVF +LR +G S PPN V++ LALF+TF++M
Sbjct: 1 MQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIM 60
Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
SP +D+ QP +I+ A+++ A+P FM TRE DL LF +A++
Sbjct: 61 SPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG---- 116
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + + RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I
Sbjct: 117 PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATI 176
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 177 ALPFKLMLFVLVDGWQLLVGSLAQSF 202
>gi|114764047|ref|ZP_01443286.1| flagellar biosynthetic protein FliP [Pelagibaca bermudensis
HTCC2601]
gi|114543405|gb|EAU46420.1| flagellar biosynthetic protein FliP [Roseovarius sp. HTCC2601]
Length = 241
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 103/245 (42%), Positives = 155/245 (63%), Gaps = 5/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M R AL L+ L A ++ +++ S++ ++ + T+LS+AP + IMVT
Sbjct: 1 MWRAALSALILI--ALSTAATAQELRLDLGGGGSLTATSLQLIALITLLSLAPGIAIMVT 58
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CFP + V +ILR +G+ PPN++I+SLALF+T++VM PT + + G++PL++ +I+
Sbjct: 59 CFPFLVTVLAILRQAVGLQQSPPNMLIVSLALFLTYFVMEPTFTAAWQDGLRPLIDEEIS 118
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
++R PF FM T D + F MA + T +LIPSFM+SE
Sbjct: 119 VEEGVERTLVPFRGFMAGRT---DANTFSSMADLRPDASGETLRPEAPLSLLIPSFMLSE 175
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ R+F++GFLI LPFLIID++VA I+M+MGMMM+PP +SLPFK+ FFV+ DGWSLL
Sbjct: 176 IARAFQVGFLIFLPFLIIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGWSLLAGA 235
Query: 241 LVKSF 245
LV+S+
Sbjct: 236 LVRSY 240
>gi|315127309|ref|YP_004069312.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913]
gi|315015823|gb|ADT69161.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913]
Length = 246
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 84/242 (34%), Positives = 136/242 (56%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
F + P + + + ++ I T +S P +IM+T F
Sbjct: 5 LLFLFAMVFVPGVNAEGIDALTITTNADGTQDYSVTLQVLAIMTAMSFIPAAIIMMTSFT 64
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R I+V +ILR +G+ P N V++ ++LF++ ++M+P ++ E I+P ++ Q+T
Sbjct: 65 RIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIMAPIYEQINERAIEPYLSEQVTSLE 124
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A+ EP FM + R KDL F +A + + +LIP+F+ SEL+
Sbjct: 125 ALDLAKEPMKAFMLSQVRIKDLETFAKIAGY----DQLDSPEATPMVVLIPAFVTSELQT 180
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F IGF+ +PFLI+D++VA+++MAMGMMML P +SLPFK++ FVL+DGWSL++ L K
Sbjct: 181 AFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLAK 240
Query: 244 SF 245
SF
Sbjct: 241 SF 242
>gi|88800467|ref|ZP_01116031.1| flagellar biosynthetic protein FliP [Reinekea sp. MED297]
gi|88776797|gb|EAR08008.1| flagellar biosynthetic protein FliP [Reinekea sp. MED297]
Length = 221
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 88/221 (39%), Positives = 135/221 (61%), Gaps = 3/221 (1%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
+ + + ++ I T L+ P L+M+T F R I+VF+ILR +G+ P N
Sbjct: 2 TLETTEDGGTRYSVTIQILAIMTALTFIPAALMMMTSFTRIIVVFAILRQAIGLQQTPSN 61
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
++I LALF+TF++M+P + IQP + I A+ R EP FM TRE D
Sbjct: 62 QMLIGLALFLTFFIMAPVFNEVNANAIQPYIAEDILPLEAVDRAVEPMKRFMLAQTRESD 121
Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
L LF+ +A + + IL+P+F+ SEL+ +F+IGFL+ +PFLIID+++A+
Sbjct: 122 LGLFIRLADE---EGNFDDPQQVPLNILMPAFVTSELKTAFQIGFLLFIPFLIIDLVIAS 178
Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I+MAMGMMML P ISLPFK++ FVL+DGW++++ ++ SF
Sbjct: 179 ILMAMGMMMLSPIIISLPFKIMLFVLVDGWAMVMGSVAASF 219
>gi|327399031|ref|YP_004339900.1| flagellar biosynthetic protein FliP [Hippea maritima DSM 10411]
gi|327181660|gb|AEA33841.1| flagellar biosynthetic protein FliP [Hippea maritima DSM 10411]
Length = 249
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 96/227 (42%), Positives = 148/227 (65%), Gaps = 4/227 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
S++ M + + ++ + T+L++AP +LIM+T F R IIV +ILR +G
Sbjct: 26 APSINITMPTANNPTTIAESIKLLILLTVLALAPSILIMMTSFTRIIIVLAILRQALGTQ 85
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
+PPN ++I +ALF+T ++MSP ++ + PL N+IT A + +P FM
Sbjct: 86 QMPPNQILIGIALFLTLFIMSPQINTIYKTAYLPLQKNEITLEGAYKNATKPLKTFMLKQ 145
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TR+KDL+LF+ +A + + I+IP+F+ISEL+ +FE+GF+I +PFLIID
Sbjct: 146 TRQKDLALFLRIAKKPNPK----NPQELSMDIVIPAFIISELKTAFEMGFIIYIPFLIID 201
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+V++I+M+MGMMMLPP ISLPFK++ FVL DGW+L+V +L KSF+
Sbjct: 202 MVVSSILMSMGMMMLPPIMISLPFKLLIFVLADGWNLVVMSLFKSFM 248
>gi|74101640|gb|AAZ99730.1| FliPL [Aeromonas hydrophila]
Length = 244
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 87/227 (38%), Positives = 132/227 (58%), Gaps = 4/227 (1%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
A +L V+ ++ T+L + P LL+M+T F R IIV +ILR MG+
Sbjct: 18 ADMTLFSVLPGAEGGEDYNIKLQILFFMTLLGLLPTLLLMMTSFTRIIIVLAILRQAMGL 77
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
PPN V+I ++L +T +M P + P N+I+ + I R +P FM
Sbjct: 78 QQSPPNRVLIGISLILTIVIMRPVWTDMYQHAFIPYDQNEISLSEGIARAEKPLRHFMLA 137
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
TRE DL + ++ T D + + +L+P+F++SEL +F+IGF++ +PFL+I
Sbjct: 138 QTREPDLEQMLRISGEPISLTK----DEVPFGVLLPAFVLSELNTAFQIGFMLFIPFLVI 193
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
D++VA+++MAMGMMML P ISLPFK++ FVL+DGWS+ V L SF
Sbjct: 194 DLVVASVLMAMGMMMLSPLIISLPFKLMVFVLVDGWSMTVGTLAASF 240
>gi|257457603|ref|ZP_05622770.1| flagellar biosynthetic protein FliP [Treponema vincentii ATCC
35580]
gi|257444989|gb|EEV20065.1| flagellar biosynthetic protein FliP [Treponema vincentii ATCC
35580]
Length = 269
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 132/232 (56%), Gaps = 6/232 (2%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
A ++ + P + + ++ + T++++AP +L+++T F R I ++ +
Sbjct: 42 AGAIPFVNLNIREPQNNREVAFSIQLLLLITLITLAPSILLLMTSFLRLSIALDFIKRAL 101
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
+ VPP V+ +ALF+T ++M PT + +P+ + QI TA +P +FM
Sbjct: 102 SLQQVPPTQVLNGIALFLTIFIMWPTFTEIYDKSFKPMADGQINIETAYTEAEKPLRLFM 161
Query: 137 RNNT--REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
+ L M +A NT + +LIP+F++ EL +F+IG + LP
Sbjct: 162 YKQMAHDPSHIRLCMSLARMDKPNT----LADVPTHVLIPAFILHELTVAFQIGIFLYLP 217
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
F+IIDM+VA+I+M+MGM+MLPP IS+PFK+I FVL+DGW+LLV L +SF+
Sbjct: 218 FIIIDMVVASILMSMGMIMLPPVQISMPFKLILFVLVDGWNLLVGQLFQSFL 269
>gi|307546958|ref|YP_003899437.1| flagellar biosynthesis protein FliP [Halomonas elongata DSM 2581]
gi|307218982|emb|CBV44252.1| flagellar biosynthesis protein FliP [Halomonas elongata DSM 2581]
Length = 273
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 89/226 (39%), Positives = 136/226 (60%), Gaps = 4/226 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
+ + + ++T + + ++ P L+M+T F R IIV S+LRT MG
Sbjct: 50 QIPGIISEPMEDGGQKWSLSLQTLLLLSSMAFLPAALLMMTSFTRIIIVLSLLRTAMGTQ 109
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
+ PPN V++ LALF+TF++M+P PL N I +++ P FM
Sbjct: 110 ATPPNQVLLGLALFLTFFIMAPVFGEVHAQAWVPLSNGDINFPEFLRQAQGPLREFMMAQ 169
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TRE DL+LF +A ++ + RIL+PSF+ SEL+ +F+IGF I +PFLIID
Sbjct: 170 TREPDLALFARLADIG----ELQGPADVPMRILVPSFVTSELKTAFQIGFTIFIPFLIID 225
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++VA+ +M++GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 226 LVVASTLMSLGMMMVPPITISLPFKLMLFVLVDGWQLLIGSLAESF 271
>gi|71906402|ref|YP_283989.1| flagellar biosynthesis protein FliP [Dechloromonas aromatica RCB]
gi|71846023|gb|AAZ45519.1| Flagellar transport protein FliP [Dechloromonas aromatica RCB]
Length = 248
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 94/229 (41%), Positives = 146/229 (63%), Gaps = 6/229 (2%)
Query: 19 AKSSLHDVMNIP--ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
A L V + P + + ++T + T L+ P +++M+T F R +IV S+LR +
Sbjct: 22 AAGGLPAVTSTPAAGGGTTYSLTIQTLLLMTALTFIPAIVLMMTGFTRIVIVLSLLRHAL 81
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G + PPN V++ L+LF+TF+VMSP L++ PL N+I A +R A P FM
Sbjct: 82 GTQTAPPNQVVVGLSLFLTFFVMSPVLEKVYTDAYVPLSENKINIMQAGERAAIPMRSFM 141
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TRE DL+LF +A I + RIL+P+F+ISEL+ +F+IGF++ +PFL
Sbjct: 142 LKQTRESDLALFAGIAKIDK----IETPEDTPLRILVPAFVISELKTAFQIGFILFIPFL 197
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+IDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW L++ +LV+SF
Sbjct: 198 VIDMVVASLLMSMGMMMMSPVMVALPFKLMLFVLVDGWHLVIGSLVQSF 246
>gi|299534771|ref|ZP_07048101.1| flagellar biosynthesis protein FliP [Lysinibacillus fusiformis ZC1]
gi|298729859|gb|EFI70404.1| flagellar biosynthesis protein FliP [Lysinibacillus fusiformis ZC1]
Length = 221
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 94/224 (41%), Positives = 146/224 (65%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + +D + + V+ + T+LS+AP +LI++T F R +IV S +RT + +
Sbjct: 2 NDLINIFSNSDPTNVSTSVKLLLLLTVLSLAPSILILMTSFARIVIVLSFVRTALATQQM 61
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN VII LALF+TF++M+PT + +QPL +I A R + PF FM +TR
Sbjct: 62 PPNQVIIGLALFLTFFIMAPTFQEVNKEALQPLFAEEIGIEEAYDRASVPFKEFMSKHTR 121
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+KDL LF+ + + I +L+P+F +SE++ +F+IGF+I +PFL+IDMI
Sbjct: 122 QKDLDLFLTYNQADKP----ASVEEIPLTMLVPAFALSEIKTAFQIGFMIFIPFLVIDMI 177
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+ +M+MGMMMLPP ISLPFK++ FVL+DGW L++++L++SF
Sbjct: 178 VASTLMSMGMMMLPPVMISLPFKILLFVLVDGWYLVMKSLLQSF 221
>gi|307293814|ref|ZP_07573658.1| flagellar biosynthetic protein FliP [Sphingobium chlorophenolicum
L-1]
gi|306879965|gb|EFN11182.1| flagellar biosynthetic protein FliP [Sphingobium chlorophenolicum
L-1]
Length = 273
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 89/221 (40%), Positives = 137/221 (61%), Gaps = 4/221 (1%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
+ I D + ++ + ++L++ P L++M+T F R IIV S+LR +G+ PPN
Sbjct: 55 AMGQISGDGRSLSLSLQILILMSLLTVLPSLILMMTSFTRIIIVLSLLRQALGLQQTPPN 114
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
V++ L+LF++ +VM P +D+ P QI A+ R A+ FM TRE D
Sbjct: 115 QVLVGLSLFLSLFVMRPAIDQINAQAFDPYGKGQIPIEEAVGRSAKVLHGFMTKQTRETD 174
Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
L LF ++A + I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+
Sbjct: 175 LKLFQNLAEAP----AFRTPADIPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVAS 230
Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+MA+GMMML PT IS+PFK++ FVL+DGW+L + +L SF
Sbjct: 231 TLMALGMMMLSPTIISMPFKLLLFVLVDGWALTMGSLAGSF 271
>gi|169827136|ref|YP_001697294.1| flagellar biosynthesis protein FliP [Lysinibacillus sphaericus
C3-41]
gi|168991624|gb|ACA39164.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41]
Length = 221
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 93/224 (41%), Positives = 147/224 (65%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + +D + + V+ + T+LS+AP +LI++T F R +IV S +RT + +
Sbjct: 2 NDLINIFSNSDPTNVSTSVKLLLLLTVLSLAPSILILMTSFARIVIVLSFVRTALATQQM 61
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN VI+ LALF+TF++M+PT + +QPL + +I A R + PF FM +TR
Sbjct: 62 PPNQVIVGLALFLTFFIMAPTFQEVNKEALQPLFSEEIGLEEAYDRASLPFKEFMSKHTR 121
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+KDL LF+ + + I +L+P+F +SE++ +F+IGF+I +PFL+IDMI
Sbjct: 122 QKDLDLFLSYNQAEKP----ASVEEIPLTMLVPAFALSEIKTAFQIGFMIFIPFLVIDMI 177
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+ +M+MGMMMLPP ISLPFK++ FVL+DGW L++++L++SF
Sbjct: 178 VASTLMSMGMMMLPPVMISLPFKILLFVLVDGWYLVMKSLLQSF 221
>gi|77359751|ref|YP_339326.1| flagellar biosynthesis protein FliP [Pseudoalteromonas haloplanktis
TAC125]
gi|76874662|emb|CAI85883.1| flagellar biosynthesis [Pseudoalteromonas haloplanktis TAC125]
Length = 246
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 85/242 (35%), Positives = 136/242 (56%), Gaps = 4/242 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ L P + + + ++ I T LS P +IM+T F
Sbjct: 5 LLLIFVMLFVPNVSAEGIDALTITTNADGTQDYSVTLQVLAIMTALSFIPAAIIMMTSFT 64
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R I+V +ILR +G+ P N V++ ++LF++ ++M+P + E I+P ++ Q+T
Sbjct: 65 RIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIMAPIYQQVNERAIEPYLSEQVTSME 124
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A++ EP FM + R KDL F +A + + +LIP+F+ SEL+
Sbjct: 125 ALELAKEPMKAFMLSQVRIKDLETFAKIAGY----DQLDSPEATPLIVLIPAFVTSELQT 180
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F IGF+ +PFLI+D++VA+++MAMGMMML P +SLPFK++ FVL+DGWSL++ L K
Sbjct: 181 AFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLAK 240
Query: 244 SF 245
SF
Sbjct: 241 SF 242
>gi|94500290|ref|ZP_01306823.1| Flagellar transport protein FliP [Oceanobacter sp. RED65]
gi|94427589|gb|EAT12566.1| Flagellar transport protein FliP [Oceanobacter sp. RED65]
Length = 251
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 95/248 (38%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 2 IRYCFFALFLVTPELVFAKS----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
IR + A L+ P L +A++ P + ++ I TIL++ P L+I
Sbjct: 6 IRLVWVAALLLLPSLGWAENTFDIPAITYEEDPNGNGRYSVTIQILAIMTILTVLPSLVI 65
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
M+T F R I+VF+ILR +G+ P N +++ L LF+T ++M P + E IQP +
Sbjct: 66 MMTSFTRIIVVFAILRQALGLQQTPSNQILLGLTLFLTLFIMMPIFNVINETAIQPYLEE 125
Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
+I A+ P FM RE DL++F+ ++ T I ILIP+F+
Sbjct: 126 KILPKEALDLAIIPIKEFMLAQVRETDLNMFVRLSG----ETGIQTPMDTPLHILIPAFI 181
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
SEL+ +F+IGF+I +PFLIID++VA+I+MAMGMMML P ISLPFK++ FVL+DGW ++
Sbjct: 182 TSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPIIISLPFKIMLFVLVDGWVMI 241
Query: 238 VENLVKSF 245
+ L S+
Sbjct: 242 IGTLAASY 249
>gi|163732490|ref|ZP_02139935.1| flagellar biosynthesis protein P [Roseobacter litoralis Och 149]
gi|161393850|gb|EDQ18174.1| flagellar biosynthesis protein P [Roseobacter litoralis Och 149]
Length = 243
Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats.
Identities = 104/245 (42%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M R A+FL + + +++ D S+S ++ F + T+LS+AP L IM+T
Sbjct: 1 MTRVVLLAVFLTGVFIPSVSFAQDLSISLGDDGSLSARTIQLFILITVLSLAPGLAIMIT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CFP + V SILR +G+ PPN++I+SLALF+T+++M P + + GIQPL +N I
Sbjct: 61 CFPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFIMEPVFQAAWQNGIQPLTDNAID 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
TA R EPF FM F MA D T +L+PSF++SE
Sbjct: 121 AETAFVRTLEPFRSFMAARLDPD---TFFAMAELRSETIDATPTAEAPLSVLVPSFLLSE 177
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ R+F+IGFL+ LPFLIID++VA ++M+MGMMM+PP +SLPFK+ FFVL DGW+L+ +
Sbjct: 178 ISRAFQIGFLVFLPFLIIDLVVAAVLMSMGMMMVPPVIVSLPFKLAFFVLADGWNLIAGS 237
Query: 241 LVKSF 245
LV+S+
Sbjct: 238 LVQSY 242
>gi|330964683|gb|EGH64943.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 250
Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 140/245 (57%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I + + N + ++ I T LS P ++++T
Sbjct: 7 LILLMLVVVAPAALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMT 66
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + ++T
Sbjct: 67 SFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAGKLT 126
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ + P FM TR DL LFM ++ TDI D IL+P+F+ISE
Sbjct: 127 AQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKR----TDIPTPDAAPLTILVPAFVISE 182
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V
Sbjct: 183 LKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGT 242
Query: 241 LVKSF 245
L SF
Sbjct: 243 LAGSF 247
>gi|269792928|ref|YP_003317832.1| flagellar biosynthetic protein FliP [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100563|gb|ACZ19550.1| flagellar biosynthetic protein FliP [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 247
Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats.
Identities = 87/231 (37%), Positives = 138/231 (59%), Gaps = 4/231 (1%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
++ + ++ + T+LS+AP +++M+T F R ++V +R
Sbjct: 20 PPTLPIPAIRVGVEAARSQQDVALTLQIVALMTVLSMAPAIILMLTSFTRILVVLGFVRN 79
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
MG+ +PPN VI SLALF+TF+ MSP D+ + + P M +I+ A V P
Sbjct: 80 AMGLQQMPPNQVIASLALFLTFFTMSPVWDQVYKGALVPYMRGEISAQRAFDGVEGPVRA 139
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM TRE +LSL + +A + R+LIP+F+ISEL+ +F++G +I +P
Sbjct: 140 FMLRQTREPELSLMVRLAKMKQPK----NPSEVPTRVLIPAFVISELKTAFQMGVVIFIP 195
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
F+++DMIV++++M+MGM+MLPP ISLPFKV+ FV+ DGW L++ +LV SF
Sbjct: 196 FIVVDMIVSSVLMSMGMIMLPPMMISLPFKVLLFVMADGWDLVIASLVSSF 246
>gi|117926839|ref|YP_867456.1| flagellar biosynthesis protein FliP [Magnetococcus sp. MC-1]
gi|117610595|gb|ABK46050.1| flagellar biosynthetic protein FliP [Magnetococcus sp. MC-1]
Length = 260
Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats.
Identities = 99/249 (39%), Positives = 146/249 (58%), Gaps = 11/249 (4%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLS-------ISTWIVRTFGIFTILSIAPILL 56
A ++ A +++ + + ++ T+ S+AP +L
Sbjct: 15 LVTMAFMVLLVGDALAVEVNLPGLSLQGGGNPGDADPEQVSIALQILAFMTLFSLAPGIL 74
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
+MVT F R I+V S +R MG+ PPN V+I+LALF+T +VM P +D+ + + P +N
Sbjct: 75 VMVTSFTRVIVVMSFVRQAMGLQGQPPNQVLIALALFVTMFVMGPVMDKVWDTALNPYLN 134
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
QI A P FM TRE DL LFM +A + K D R++IP+F
Sbjct: 135 KQIGGEQAWDNAVIPVKDFMLRQTRESDLGLFMRLAGME----QVEKRDEAPLRLVIPAF 190
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
M+SEL+ +F+IGF++ LPFLI+DM+VA++VM+MGMMMLPP IS+P K+I FVL+DGW L
Sbjct: 191 MVSELKTAFQIGFMVYLPFLIVDMVVASVVMSMGMMMLPPLVISMPIKLILFVLVDGWVL 250
Query: 237 LVENLVKSF 245
+V +LV+SF
Sbjct: 251 VVGSLVQSF 259
>gi|126653733|ref|ZP_01725651.1| flagellar biosynthesis protein P [Bacillus sp. B14905]
gi|126589697|gb|EAZ83833.1| flagellar biosynthesis protein P [Bacillus sp. B14905]
Length = 221
Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats.
Identities = 93/217 (42%), Positives = 145/217 (66%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+D + + V+ + T+LS+AP +LI++T F R +IV S +RT + +PPN VI+
Sbjct: 9 SNSDPTNVSTSVKLLLLLTVLSLAPSILILMTSFARIVIVLSFVRTALATQQMPPNQVIV 68
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+TF++M+PT + +QPL + +I A R + PF FM +TR+KDL LF
Sbjct: 69 GLALFLTFFIMAPTFQEVNKEALQPLFSEEIGLDEAYDRASLPFKEFMSKHTRQKDLDLF 128
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ + + I +L+P+F +SE++ +F+IGF+I +PFL+IDMIVA+ +M+
Sbjct: 129 LSYNQAEKP----ASVEEIPLTMLVPAFALSEIKTAFQIGFMIFIPFLVIDMIVASTLMS 184
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMMLPP ISLPFK++ FVL+DGW L++++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLVMKSLLQSF 221
>gi|330876029|gb|EGH10178.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|331016991|gb|EGH97047.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 250
Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 140/245 (57%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I + + N + ++ I T LS P ++++T
Sbjct: 7 LILLMLVVVAPAALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMT 66
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + ++T
Sbjct: 67 SFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLT 126
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ + P FM TR DL LFM ++ TDI D IL+P+F+ISE
Sbjct: 127 AQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKR----TDIPTPDAAPLTILVPAFVISE 182
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V
Sbjct: 183 LKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGT 242
Query: 241 LVKSF 245
L SF
Sbjct: 243 LAGSF 247
>gi|145297437|ref|YP_001140278.1| flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142850209|gb|ABO88530.1| lateral flagellar assembly protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 244
Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats.
Identities = 86/227 (37%), Positives = 132/227 (58%), Gaps = 4/227 (1%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
A +L V+ ++ T+L + P LL+M+T F R IIV +ILR MG+
Sbjct: 18 ADMTLFSVLPGAEGGEDYNIKLQILFFMTLLGLLPTLLLMMTSFTRIIIVLAILRQAMGL 77
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
PPN V+I ++L +T ++ P + P N+I+ + I R +P FM
Sbjct: 78 QQSPPNRVLIGISLILTIVIIRPVWTDMYQHAFIPYDQNEISLSEGIARAEKPLRHFMLA 137
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
TRE DL + ++ T D + + +L+P+F++SEL +F+IGF++ +PFL+I
Sbjct: 138 QTREPDLEQMLRISGEPTSLTK----DEVPFGVLLPAFVLSELNTAFQIGFMLFIPFLVI 193
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
D++VA+++MAMGMMML P ISLPFK++ FVL+DGWS+ V L SF
Sbjct: 194 DLVVASVLMAMGMMMLSPLIISLPFKLMVFVLVDGWSMTVGTLAASF 240
>gi|28869176|ref|NP_791795.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213967547|ref|ZP_03395695.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
tomato T1]
gi|301382884|ref|ZP_07231302.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
tomato Max13]
gi|302061094|ref|ZP_07252635.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
tomato K40]
gi|302131290|ref|ZP_07257280.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28852416|gb|AAO55490.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927848|gb|EEB61395.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
tomato T1]
Length = 250
Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 140/245 (57%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I + + N + ++ I T LS P ++++T
Sbjct: 7 LILLMLAVVAPAALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMT 66
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + ++T
Sbjct: 67 SFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLT 126
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ + P FM TR DL LFM ++ TDI D IL+P+F+ISE
Sbjct: 127 AQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKR----TDIPTPDAAPLTILVPAFVISE 182
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V
Sbjct: 183 LKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGT 242
Query: 241 LVKSF 245
L SF
Sbjct: 243 LAGSF 247
>gi|242310594|ref|ZP_04809749.1| flagellar biosynthesis protein FliP [Helicobacter pullorum MIT
98-5489]
gi|239522992|gb|EEQ62858.1| flagellar biosynthesis protein FliP [Helicobacter pullorum MIT
98-5489]
Length = 251
Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats.
Identities = 96/249 (38%), Positives = 150/249 (60%), Gaps = 8/249 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSS----LHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
++ F L + +S + + P + I+ + T+L +AP L+
Sbjct: 6 LLIVVFLPLVIFAAPPELPQSPTIPTIDLTLTAPNEPGDLVAILNIVIVLTLLVLAPSLV 65
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
+M T F R +IVFS LRT MG PP +++S AL +T ++M P + E G++P +
Sbjct: 66 LMATSFARILIVFSFLRTAMGTQQSPPTQLLVSFALILTMFIMEPVVKEGYEKGVKPYVA 125
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
+I+ A R ++PF FM NTR KDL+LF + + + + I +P+F
Sbjct: 126 KEISYQEAFVRASQPFKDFMIRNTRPKDLALFYRIRGMENP----QNAQEVPFTIALPAF 181
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
+ISE++ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPPT ISLPFK++ F+L+DG++L
Sbjct: 182 IISEMKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPTMISLPFKILIFILVDGFNL 241
Query: 237 LVENLVKSF 245
L NLV+SF
Sbjct: 242 LTMNLVESF 250
>gi|323490154|ref|ZP_08095374.1| flagellar biosynthesis protein FliP [Planococcus donghaensis
MPA1U2]
gi|323396202|gb|EGA89028.1| flagellar biosynthesis protein FliP [Planococcus donghaensis
MPA1U2]
Length = 229
Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats.
Identities = 97/228 (42%), Positives = 147/228 (64%), Gaps = 4/228 (1%)
Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
+ ++ + + ++ + T+LS+AP +LIM+T F R IIV S +RTG+G
Sbjct: 6 LSSINIPGIDFGAESPEDVSSTLQLLALLTVLSLAPGILIMMTSFTRIIIVLSFVRTGLG 65
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
S+PPN V++ LALF+TF++MSP + + +QP ++ ++ + A+ P FM
Sbjct: 66 TQSMPPNQVLVGLALFLTFFIMSPIVVEMNDTALQPYLDGEMEQQEALDTAVVPLKEFMA 125
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
NTREKDL+LF A + + I L+P+F ISE++ +F+IGF+I +PFLI
Sbjct: 126 KNTREKDLALFFKYAELEKPD----SIEEIPLTSLVPAFAISEMKTAFQIGFVIFIPFLI 181
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IDM+VA+ +MAMGMMMLPP ISLPFK++ FVL+DGW L++E+L+ SF
Sbjct: 182 IDMVVASTLMAMGMMMLPPVMISLPFKILLFVLVDGWYLIIESLLVSF 229
>gi|124516299|gb|EAY57807.1| Flagellar biosynthesis protein FliP [Leptospirillum rubarum]
Length = 265
Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats.
Identities = 104/249 (41%), Positives = 151/249 (60%), Gaps = 7/249 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDV----MNIPADLSISTWIVRTFGIFTILSIAPILL 56
M F V S L D+ + S V + T+LS+AP +L
Sbjct: 19 MTGVLFVTSAPAADLHVAPVSPLPDIHLSFGSGTPAPSQVAVTVELLLLLTVLSLAPAIL 78
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
+M+T F R ++V S LR MG VPPN V++ L+LF+TF+VM+P E I P ++
Sbjct: 79 VMMTSFTRIVVVLSFLRQAMGTAQVPPNQVLVGLSLFLTFFVMAPVWKTMDETAITPYLD 138
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
+I A+ R +P FM R+KD++LF+ +AH + D I +LIP+F
Sbjct: 139 KKIAPDVAVDRAMKPVRAFMFRQVRQKDIALFVRIAHLPR---TPSSPDDIPTYVLIPAF 195
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
++SEL +FE+GFLI LPFLI+DM+V++++M+MGMMMLPPT +SLPFK++ FVL+DGWSL
Sbjct: 196 VVSELSTAFEMGFLIYLPFLILDMVVSSVLMSMGMMMLPPTVVSLPFKILLFVLVDGWSL 255
Query: 237 LVENLVKSF 245
+V +LV+SF
Sbjct: 256 VVGSLVRSF 264
>gi|297584051|ref|YP_003699831.1| flagellar biosynthetic protein FliP [Bacillus selenitireducens
MLS10]
gi|297142508|gb|ADH99265.1| flagellar biosynthetic protein FliP [Bacillus selenitireducens
MLS10]
Length = 226
Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats.
Identities = 98/223 (43%), Positives = 144/223 (64%), Gaps = 4/223 (1%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
+ + D + T V+ + T+LS+AP +LI++T F R +IV S +R G+ +P
Sbjct: 8 IPALDIFSDDPANLTSTVQLLLLLTVLSLAPAILILMTSFTRIVIVLSFVRNGLATQQMP 67
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN VII LALF+TF+VM+PT E +QPL + I++ A P FM +TRE
Sbjct: 68 PNQVIIGLALFLTFFVMAPTFSEVNEAALQPLFDGDISQEEAFDEATIPMKEFMAQHTRE 127
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
+DL+LFM A + I L+P+F+ISEL+ +F+IGF+I +PFL+IDM+V
Sbjct: 128 RDLALFMGYAGQERP----ESLEDIPLTSLVPAFVISELKTAFQIGFMIFVPFLVIDMVV 183
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+++M+MGMMMLPP I+LPFKV+ FVL+DGW L+V +L+ +F
Sbjct: 184 ASVLMSMGMMMLPPVMIALPFKVLLFVLVDGWHLVVRSLLYTF 226
>gi|332187877|ref|ZP_08389610.1| flagellar biosynthetic protein FliP [Sphingomonas sp. S17]
gi|332012038|gb|EGI54110.1| flagellar biosynthetic protein FliP [Sphingomonas sp. S17]
Length = 293
Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats.
Identities = 87/208 (41%), Positives = 136/208 (65%), Gaps = 4/208 (1%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
++ I +L+I P +++M+T F R +IV +ILR +G+ PPN V+I LA+F++ +
Sbjct: 88 LSLQVLIIMGLLTILPGIILMMTSFTRIVIVLAILRQALGLQQTPPNQVLIGLAMFLSLF 147
Query: 98 VMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+M+PT+ + IQP ++ T I+ P FM TR KD+++F MA S
Sbjct: 148 IMAPTISQMNANAIQPYAEGRLPGTEMIKAAGAPLHAFMAKQTRVKDVTMFAQMAKSG-- 205
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ I Y +L+P+F+ SEL+ +F+IGFLI LPF++ID++VAT++MA+GMMML P+
Sbjct: 206 --PYASPNDIPYAVLLPAFVTSELKTAFQIGFLIFLPFIVIDLVVATVLMALGMMMLSPS 263
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
ISLPFK++ FVL+DGW+L + +L SF
Sbjct: 264 IISLPFKLLLFVLVDGWALTMGSLANSF 291
>gi|315453643|ref|YP_004073913.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179]
gi|315132695|emb|CBY83323.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179]
Length = 252
Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats.
Identities = 98/225 (43%), Positives = 151/225 (67%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
++ ++ P + + + T+L +AP L++ +T F R I+VFS LRT +G
Sbjct: 28 PTIDLSLSAPHTPTQLVTTLNVVLVLTLLVLAPSLVLTMTSFIRLIVVFSFLRTALGTQQ 87
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PP +++SLAL +TF++M PT +S ++ I+P + +I+ T A +R PF FM NT
Sbjct: 88 TPPTQILVSLALILTFFIMEPTAKKSYKIAIKPYLAEKISYTQAFERGVVPFKEFMLKNT 147
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + + + + +L+P+FMISEL+ +F+IGFL+ LPFL+IDM
Sbjct: 148 REKDLALFFRIRNLENPK----DVNSVPLSVLVPAFMISELKTAFQIGFLLYLPFLVIDM 203
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+V++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL+ENLV SF
Sbjct: 204 VVSSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLIENLVASF 248
>gi|310659027|ref|YP_003936748.1| flagellar export machinery protein [Clostridium sticklandii DSM
519]
gi|308825805|emb|CBH21843.1| component of the flagellar export machinery [Clostridium
sticklandii]
Length = 262
Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats.
Identities = 85/226 (37%), Positives = 145/226 (64%), Gaps = 1/226 (0%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ +N + + + +FT+L++ P +LIM+T F R I++ S L+ MG+
Sbjct: 36 PDISLEINGSENPRDLSNSIEMLMLFTVLTLLPSILIMMTSFTRVIVILSFLKNAMGVQQ 95
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P+ VI+ L+LF+TF++M+P ++P +N+IT+ A + P FM T
Sbjct: 96 AIPSQVIVGLSLFLTFFIMAPVGSEVYSEALRPYFDNEITQEEAFETAMVPVREFMMKQT 155
Query: 141 REKDLSLFMDMAH-SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
REKD+ LFMD++ N++ ++I ++IP+F+ISEL+ F++GFL+ +PF++ID
Sbjct: 156 REKDIKLFMDLSKNEELANSEDLVLENIPNTVIIPAFIISELKTGFQVGFLLFIPFIVID 215
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+VA+ +M+MGMMMLPP ISLPFK++ FVL+DGW +++++++ F
Sbjct: 216 MVVASTLMSMGMMMLPPMMISLPFKILLFVLVDGWDMVIKSIIVGF 261
>gi|148261126|ref|YP_001235253.1| flagellar biosynthesis protein FliP [Acidiphilium cryptum JF-5]
gi|326404527|ref|YP_004284609.1| flagellar biosynthetic protein FliP [Acidiphilium multivorum
AIU301]
gi|146402807|gb|ABQ31334.1| flagellar biosynthetic protein FliP [Acidiphilium cryptum JF-5]
gi|325051389|dbj|BAJ81727.1| flagellar biosynthetic protein FliP [Acidiphilium multivorum
AIU301]
Length = 253
Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats.
Identities = 89/217 (41%), Positives = 143/217 (65%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ +++ + ++S+AP LL+M+T F R +IV S+LRT +G + PPN V+I
Sbjct: 36 GSGGAPETAKLIQLIALIGVISLAPSLLVMLTAFTRIVIVLSLLRTALGTQTTPPNSVLI 95
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+T++VM+P +S G+ P+ + ++ A PF F+ +N R D+ +F
Sbjct: 96 GLALFLTYFVMAPVFSQSWHTGLLPMTQGDVGTLEGLKLAAAPFHTFLADNARPADVRVF 155
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ +AH + +R LIP F++ ELRR FE+GF+I LPF++ID+++++I+M+
Sbjct: 156 LSLAHIKPP----ANMQDVPWRALIPGFVVGELRRGFEMGFMIFLPFMVIDIVISSILMS 211
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GMMMLPPT++SLPFK+IFFVL+DGW L+ +LV+SF
Sbjct: 212 LGMMMLPPTAVSLPFKIIFFVLVDGWQLVCGSLVRSF 248
>gi|167623389|ref|YP_001673683.1| flagellar biosynthesis protein FliP [Shewanella halifaxensis
HAW-EB4]
gi|167353411|gb|ABZ76024.1| flagellar biosynthetic protein FliP [Shewanella halifaxensis
HAW-EB4]
Length = 249
Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats.
Identities = 84/247 (34%), Positives = 139/247 (56%), Gaps = 7/247 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIM 58
I A++ + + + + ++ + T LS P ++IM
Sbjct: 5 ILLLAGLALTFMAPTALAENGILPAVTVSTGADGSTQYSVTMQILLLMTALSFIPAMVIM 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R I+V SILR +G+ P N V+I +++FMTF++MSP D+ +QP +
Sbjct: 65 LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMSPVFDKIYVQAVQPYIEQG 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+ A P FM TR DL+ F++++ + I + + ++IP+F+
Sbjct: 125 MPLQDAFTTGQGPLKDFMLAQTRNSDLNTFIEISGYQN----INEPEDAPMTVIIPAFIT 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 240
Query: 239 ENLVKSF 245
L SF
Sbjct: 241 GTLANSF 247
>gi|300817291|ref|ZP_07097509.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1]
gi|300530267|gb|EFK51329.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1]
Length = 276
Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats.
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N+QIT T A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------HAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|268679749|ref|YP_003304180.1| flagellar biosynthetic protein FliP [Sulfurospirillum deleyianum
DSM 6946]
gi|268617780|gb|ACZ12145.1| flagellar biosynthetic protein FliP [Sulfurospirillum deleyianum
DSM 6946]
Length = 238
Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats.
Identities = 99/241 (41%), Positives = 154/241 (63%), Gaps = 7/241 (2%)
Query: 8 ALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
L L + F ++ V ++ P + + TIL +AP L+ M+T F R
Sbjct: 1 MLLLSLTPMAFGADTIPTVNLSLSAPDSPQQLVTSMNLVLVLTILVLAPSLIFMMTSFLR 60
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
+IVFS LR +G +PP+ V++SLA+ +TF++M P + S ++ I+P + +++ A
Sbjct: 61 LLIVFSFLRQALGTQQMPPSQVMVSLAMILTFFIMEPVMKESYDVAIKPYLAEKMSYQEA 120
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
++ + PF FM NTREKDL+LF + + + + + + +P+FMISEL+ +
Sbjct: 121 FEKGSAPFKAFMIRNTREKDLALFFRIRNLENPK----NIEDVPLTVAMPAFMISELKTA 176
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
FEIGFL+ LPFL+IDM+V++++MAMGMMMLPP ISLPFK++ FVL+DGW+LLV+ LV+S
Sbjct: 177 FEIGFLLYLPFLVIDMVVSSVLMAMGMMMLPPAMISLPFKLLIFVLVDGWNLLVQRLVES 236
Query: 245 F 245
F
Sbjct: 237 F 237
>gi|206603142|gb|EDZ39622.1| Flagellar biosynthesis protein FliP [Leptospirillum sp. Group II
'5-way CG']
Length = 265
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 104/249 (41%), Positives = 152/249 (61%), Gaps = 7/249 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDV----MNIPADLSISTWIVRTFGIFTILSIAPILL 56
M+ F V S L D+ + S V + T+LS+AP +L
Sbjct: 19 MMGILFVTSAPAADLHVAPVSPLPDIHLSFGSGTPAPSQVAVTVELLLLLTVLSLAPAIL 78
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
+M+T F R ++V S LR MG VPPN V++ L+LF+TF+VM+P E I P ++
Sbjct: 79 VMMTSFTRIVVVLSFLRQAMGTAQVPPNQVLVGLSLFLTFFVMAPVWKTMDETAITPYLD 138
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
+I A+ R +P FM R+KD++LF+ +AH + D I +LIP+F
Sbjct: 139 KKIAPDVAVDRAMKPVRAFMFRQVRQKDIALFVRIAHLPR---TPSSPDDIPTYVLIPAF 195
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
++SEL +FE+GFLI LPFLI+DM+V++++M+MGMMMLPPT +SLPFK++ FVL+DGWSL
Sbjct: 196 VVSELSTAFEMGFLIYLPFLILDMVVSSVLMSMGMMMLPPTVVSLPFKILLFVLVDGWSL 255
Query: 237 LVENLVKSF 245
+V +LV+SF
Sbjct: 256 VVGSLVRSF 264
>gi|119385379|ref|YP_916435.1| flagellar biosynthesis protein FliP [Paracoccus denitrificans
PD1222]
gi|119375146|gb|ABL70739.1| flagellar biosynthetic protein FliP [Paracoccus denitrificans
PD1222]
Length = 241
Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 95/247 (38%), Positives = 147/247 (59%), Gaps = 9/247 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI--PADLSISTWIVRTFGIFTILSIAPILLIM 58
MIR L+ P+ A+ + + + T LS+AP + IM
Sbjct: 1 MIRLVLVLAVLLLPQPGSAQDLPLIDAAGLDAVAGGVGRHAITLLAVMTALSLAPGIAIM 60
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
VTCFP + V SILR +G+ PPN++I+SLA+F+T++VM+P L + ++ PL + +
Sbjct: 61 VTCFPFIVTVLSILRQSLGLQQSPPNMLIVSLAMFLTWFVMNPVLTEAWDVAGAPLRDGR 120
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
IT A +R PF FM + T + L+ ++A D +LIP+FMI
Sbjct: 121 ITVEQAFERGIVPFRGFMEHRTDPEMLATLAEIAPDPEAAPDR-------LSVLIPAFMI 173
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SE++R+FEIGFL+ LPFLIID++V+ ++M+MGMMM+PP ++LPFK+ FFV++DGW ++
Sbjct: 174 SEIQRAFEIGFLVALPFLIIDLVVSAVLMSMGMMMVPPVVVALPFKLAFFVVVDGWGMIA 233
Query: 239 ENLVKSF 245
LV+S+
Sbjct: 234 AALVRSY 240
>gi|256833225|ref|YP_003161952.1| flagellar biosynthetic protein FliP [Jonesia denitrificans DSM
20603]
gi|256686756|gb|ACV09649.1| flagellar biosynthetic protein FliP [Jonesia denitrificans DSM
20603]
Length = 276
Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 88/235 (37%), Positives = 140/235 (59%), Gaps = 4/235 (1%)
Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
LV P A ++I T + T+LS+AP LL+++T F + ++V S
Sbjct: 45 LVDPADPAAPVDDGISIDIGGGGDGPTSSIVVLLGITLLSVAPSLLLLMTSFTKILVVLS 104
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
I R +G+ SVPPN V+ +ALF++ ++M P L ++ +QP + + A+ + +
Sbjct: 105 ITRNALGLQSVPPNQVLAGIALFLSIFIMGPVLTSINDIAVQPFLAGDLDFAGALDQGSG 164
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM +TRE D++L A + + + LIP+F++SELR +F IGF+
Sbjct: 165 PLRDFMLAHTRESDIALITRAAEAENP----ADPQSVPLMTLIPAFLLSELRAAFIIGFV 220
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I LPFL+ID++++ +M++GMMMLPP ISLPFK++ FVL+DGWSL+V L+ S+
Sbjct: 221 IFLPFLVIDLVISASLMSLGMMMLPPIIISLPFKLLLFVLVDGWSLIVTALIGSY 275
>gi|121997286|ref|YP_001002073.1| flagellar biosynthesis protein FliP [Halorhodospira halophila SL1]
gi|121588691|gb|ABM61271.1| flagellar biosynthetic protein FliP [Halorhodospira halophila SL1]
Length = 246
Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 90/221 (40%), Positives = 139/221 (62%), Gaps = 4/221 (1%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
+ D + V+ + T+L++ P +++M+T F R I+V +ILR +G S P N
Sbjct: 28 LTIEETEDGQTWSLSVQVLVLMTLLTLLPAMVLMMTAFTRIIVVLAILRQALGTASTPSN 87
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
V+I LALF+T +VM P D E +QP M ++ A+++ +EP FM TRE D
Sbjct: 88 QVLIGLALFLTLFVMMPVFDEINETALQPYMAEEMGAEEALEQASEPMREFMIRQTREDD 147
Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
++LF+ +A ++ D + +LIP+FM SEL+ +F IGF++ LPFL+ID++VA+
Sbjct: 148 IALFLRIA----DYGEVDSPDDVPMSVLIPAFMTSELKTAFIIGFVLYLPFLVIDLVVAS 203
Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+M+MGM+ML P ISLPFK++ FVL+DGWSL++ L SF
Sbjct: 204 TLMSMGMLMLSPMIISLPFKIMLFVLVDGWSLIMGTLASSF 244
>gi|296273474|ref|YP_003656105.1| flagellar biosynthetic protein FliP [Arcobacter nitrofigilis DSM
7299]
gi|296097648|gb|ADG93598.1| flagellar biosynthetic protein FliP [Arcobacter nitrofigilis DSM
7299]
Length = 242
Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 104/243 (42%), Positives = 150/243 (61%), Gaps = 6/243 (2%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIP--ADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
ALF+ + L A + ++I + + I +L++AP LL+MVT F
Sbjct: 3 IILALFIFSISLFAADNLPVINLSIASIDQPAQFVKTINIAIILILLAMAPTLLLMVTSF 62
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R IIV S+LR MG+ PPN ++IS+AL +T ++M P S GI+P M +I
Sbjct: 63 TRLIIVLSLLRQAMGLQQAPPNQIVISMALILTIFIMEPYAKTSYNEGIKPYMEEKIGYE 122
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
A + +PF FM NTRE+D++LF + + D + +L+P+F++SELR
Sbjct: 123 EAFAKSVKPFKEFMIKNTREEDIALFYRIKKEKNPK----NIDDVALTLLMPAFIVSELR 178
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP ISLP KVIFF++IDGW L++ NL
Sbjct: 179 TAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKVIFFIIIDGWQLIIGNLA 238
Query: 243 KSF 245
+SF
Sbjct: 239 QSF 241
>gi|322378387|ref|ZP_08052842.1| flagellar biosynthesis protein FliP [Helicobacter suis HS1]
gi|322380261|ref|ZP_08054481.1| flagellar biosynthesis protein FliP [Helicobacter suis HS5]
gi|321147298|gb|EFX41978.1| flagellar biosynthesis protein FliP [Helicobacter suis HS5]
gi|321149200|gb|EFX43645.1| flagellar biosynthesis protein FliP [Helicobacter suis HS1]
Length = 250
Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 103/250 (41%), Positives = 155/250 (62%), Gaps = 10/250 (4%)
Query: 2 IRYCFFALFLVTPELVFA------KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPIL 55
+R+ F L A +++ ++ P + + + T+L +AP L
Sbjct: 1 MRFFLFWAILAFSLACAATLKDPVIPTINLSLSAPHTPTQLVTTLNVVLVLTLLVLAPSL 60
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
++++T F R I+VFS LRT +G PP +++SLAL +TF++M P +S E I+P +
Sbjct: 61 VLVMTSFIRLIVVFSFLRTALGTQQTPPTQILVSLALILTFFIMEPAAKQSYESAIKPYL 120
Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
+I+ T A ++ PF FM NTREKDL+LF + + + IL+P+
Sbjct: 121 VEKISYTEAFEKGIVPFKEFMLKNTREKDLALFFRIRRLENPKNASA----VPLNILVPA 176
Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
FMISEL+ +F+IGFL+ LPFL+IDM+V++I+MAMGMMMLPP ISLPFK++ F+L+DG++
Sbjct: 177 FMISELKTAFQIGFLLYLPFLVIDMVVSSILMAMGMMMLPPVMISLPFKILVFILVDGFN 236
Query: 236 LLVENLVKSF 245
LLVENLV SF
Sbjct: 237 LLVENLVASF 246
>gi|320354332|ref|YP_004195671.1| flagellar biosynthetic protein FliP [Desulfobulbus propionicus DSM
2032]
gi|320122834|gb|ADW18380.1| flagellar biosynthetic protein FliP [Desulfobulbus propionicus DSM
2032]
Length = 246
Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 94/225 (41%), Positives = 149/225 (66%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+L + A + + ++ + TIL++AP +L+M T F R +IV S +R MG +
Sbjct: 25 PTLSLGIKEAATPAEVSTALQALLVLTILTVAPAILLMTTAFTRIVIVLSFVRQAMGTQN 84
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN V++ LALF+TF+VM+P+L+ + +QP + +IT+ A++R E FM +
Sbjct: 85 TPPNQVLLGLALFLTFFVMAPSLNAINDQALQPYIQEKITQQQALERSMEVMRDFMFSQV 144
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+E +L LF+D+ + ILIP+FM+SEL+R+F++GF+I +PFL+IDM
Sbjct: 145 QESELQLFIDITKEEQPADKKA----VSSSILIPAFMLSELKRAFQMGFMIYVPFLVIDM 200
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+V++++M+MGMMMLPP ISLPFK++ FVL+DGW L+V +L+KSF
Sbjct: 201 LVSSVLMSMGMMMLPPIVISLPFKLLLFVLVDGWQLVVGSLMKSF 245
>gi|224418310|ref|ZP_03656316.1| flagellar biosynthesis protein FliP [Helicobacter canadensis MIT
98-5491]
gi|253827632|ref|ZP_04870517.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|313141841|ref|ZP_07804034.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|253511038|gb|EES89697.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|313130872|gb|EFR48489.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
Length = 250
Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 96/244 (39%), Positives = 151/244 (61%), Gaps = 7/244 (2%)
Query: 5 CFFALFLVTPELVFAKSSLH---DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
CF + P + ++ ++ P + + I+ + T+L +AP L++M T
Sbjct: 10 CFIVVAFSAPPELPQSPTIPTIDLTLSGPNEPADLVAILNIVVVLTLLVLAPSLILMATS 69
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R +IVFS LRT +G PP +++S AL +T ++M P E G++P + +I+
Sbjct: 70 FARLLIVFSFLRTALGTQQSPPTQLLVSFALILTMFIMEPVFKEGYEQGVKPYVAKEISY 129
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A R ++PF FM NTR KDL+LF + + T + + I +P+F+ISE+
Sbjct: 130 QEAFVRASQPFKDFMIRNTRPKDLALFYRIRGMENPQT----AQDVPFTIALPAFIISEM 185
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPPT ISLPFK++ F+L+DG++LL NL
Sbjct: 186 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPTMISLPFKILIFILVDGFNLLTMNL 245
Query: 242 VKSF 245
V+SF
Sbjct: 246 VESF 249
>gi|254457934|ref|ZP_05071361.1| flagellar biosynthetic protein FliP [Campylobacterales bacterium GD
1]
gi|207085327|gb|EDZ62612.1| flagellar biosynthetic protein FliP [Campylobacterales bacterium GD
1]
Length = 244
Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 100/246 (40%), Positives = 152/246 (61%), Gaps = 6/246 (2%)
Query: 1 MIRYCFFALFLVTPELVFA--KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
M+R L V+ A +++ ++ P + + T+L +AP ++++
Sbjct: 1 MLRLLIVILAFVSILGAEAVTIPTMNFALSAPDTPQQLVSSLNVLVVLTLLFLAPSMVLV 60
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F RF+IVF LR +G VPP +++ LA+ +TF+VM P ++ + GI+P + +
Sbjct: 61 MTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLAMILTFFVMEPIGQKAYDNGIKPYIEEK 120
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
I A ++ PF FM NTREKDL+LF + + T + ++IPSF+I
Sbjct: 121 IGYEEAFEKSTLPFKNFMIRNTREKDLALFFRIRGMENPAT----VSDVPLSVIIPSFVI 176
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP ISLPFK++ FVLIDGWSLL+
Sbjct: 177 SELKTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMISLPFKILVFVLIDGWSLLI 236
Query: 239 ENLVKS 244
NL+ +
Sbjct: 237 GNLIAT 242
>gi|110677670|ref|YP_680677.1| flagellar biosynthesis protein FliP [Roseobacter denitrificans OCh
114]
gi|109453786|gb|ABG29991.1| flagellar biosynthetic protein FliP [Roseobacter denitrificans OCh
114]
Length = 245
Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 102/245 (41%), Positives = 150/245 (61%), Gaps = 3/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M R A+ L+ + +++ D S+S ++ F + T+LS+AP L IM+T
Sbjct: 3 MTRITLLAVVLIGLFTPSVSLAQDLSISLGDDGSLSARTIQLFILITVLSLAPGLAIMIT 62
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CFP + V SILR +G+ PPN++I+SLALF+T+++M P + + GIQPL +N I
Sbjct: 63 CFPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFIMEPVFQAAWQNGIQPLTDNAID 122
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
TA R EPF +FM F MA D +L+PSF++SE
Sbjct: 123 AETAFVRTLEPFRIFMAGRLDPD---TFFAMAELRSETIDAAPTAEAPLSVLVPSFLLSE 179
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ R+F+IGFL+ LPFLIID++VA ++M+MGMMM+PP +SLPFK+ FFVL DGW+L+ +
Sbjct: 180 ISRAFQIGFLVFLPFLIIDLVVAAVLMSMGMMMVPPVIVSLPFKLAFFVLADGWNLIAGS 239
Query: 241 LVKSF 245
LV+S+
Sbjct: 240 LVQSY 244
>gi|126463729|ref|YP_001044843.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC
17029]
gi|126105393|gb|ABN78071.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC
17029]
Length = 238
Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 91/227 (40%), Positives = 140/227 (61%), Gaps = 5/227 (2%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
++ +++ S++ V+ + T+LS+ P L +M+TCFP + V SILR +G+
Sbjct: 16 PATAQSLSLDLGDGGSLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGL 75
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
PPN++I+SLALF+T+YVM P + GI PL N++ A+ A PF FM
Sbjct: 76 QQAPPNMLIVSLALFLTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTG 135
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
L+ A + R + +L+PSF++SE++R+FEIGFLI LPFLII
Sbjct: 136 RIDPDTLA-----ALQALRPGPAAPPSEASFSVLVPSFLLSEIQRAFEIGFLIYLPFLII 190
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
D++V+ ++M+MGMMM+PP +S+PFK+ FFV+ DGWSL+ LV+S+
Sbjct: 191 DLVVSAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLISGALVRSY 237
>gi|157147125|ref|YP_001454444.1| flagellar biosynthesis protein FliP [Citrobacter koseri ATCC
BAA-895]
gi|157084330|gb|ABV14008.1| hypothetical protein CKO_02902 [Citrobacter koseri ATCC BAA-895]
Length = 250
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 83/243 (34%), Positives = 128/243 (52%), Gaps = 6/243 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I + P L + + T+L + PI+++M+TC
Sbjct: 10 IALLLLGFLVAQPALAANGDITLFSTAANGAGQDYNVKIEILILMTLLGLLPIMVLMMTC 69
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F RFIIV +ILR +G+ PPN ++ +AL +T VM P I P ++IT
Sbjct: 70 FTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYTDAIDPFQKDEITL 129
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + P +M T K ++ M +A + + I+ P++++SEL
Sbjct: 130 KQALAKAEVPLKNYMLAQTNNKAMAQMMSIAGIEGDAREQ------DLTIVTPAYLLSEL 183
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V L
Sbjct: 184 KTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGTL 243
Query: 242 VKS 244
S
Sbjct: 244 ASS 246
>gi|91792694|ref|YP_562345.1| flagellar biosynthesis protein FliP [Shewanella denitrificans
OS217]
gi|91714696|gb|ABE54622.1| flagellar biosynthetic protein FliP [Shewanella denitrificans
OS217]
Length = 247
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 86/235 (36%), Positives = 139/235 (59%), Gaps = 6/235 (2%)
Query: 13 TPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
FA+ L V + + ++ + T +S P ++IM+T F R I+V S
Sbjct: 15 FSPAGFAEGILPAVTVKTGADGSAEYSVTMQILILMTAMSFIPAMVIMLTSFTRIIVVLS 74
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
ILR +G+ P N V+I ++LFMTF++MSP D+ ++P +N +T + +
Sbjct: 75 ILRQALGLQQTPSNQVLIGISLFMTFFIMSPVFDKIYTEAVEPYINETMTLQQSYEVGKL 134
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM + R DL F++++ IT + ++IP+F+ SEL+ +F+IGF+
Sbjct: 135 PIKSFMLSQLRLTDLQTFVEISGYKG----ITSPEEAPMSVIIPAFITSELKTAFQIGFM 190
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ L SF
Sbjct: 191 LFIPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 245
>gi|152997437|ref|YP_001342272.1| flagellar biosynthesis protein FliP [Marinomonas sp. MWYL1]
gi|150838361|gb|ABR72337.1| flagellar biosynthetic protein FliP [Marinomonas sp. MWYL1]
Length = 245
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 99/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDV--MNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
MIR+ L LV P +A+ L V + T ++ I T L++ P L+M
Sbjct: 1 MIRF-VSLLLLVFPAFSWAEVGLPAVKVVTNADGSQDYTVSLQILFIMTALTLLPAALMM 59
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R I+V +ILR +G+ P N ++I +ALF+T ++M+PTLDR E+ +QP + +
Sbjct: 60 MTAFTRIIVVLAILRQAIGLQQTPSNQIMIGMALFLTLFIMTPTLDRVNEVALQPYLKEE 119
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+T A++ + P FM TRE D++LF+ +A + I + + + IL+P+F+
Sbjct: 120 MTSIQAVEAASVPVRDFMLAQTREDDIALFVKLAG---KEGTIQSMETLPFTILMPAFVT 176
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF+I +PFLI+DM+VA+++MAMGMMML P ISLPFK++ FV++DGWS+++
Sbjct: 177 SELKTAFQIGFMIFIPFLIVDMVVASVLMAMGMMMLSPIIISLPFKIMLFVMVDGWSMIM 236
Query: 239 ENLVKSF 245
L SF
Sbjct: 237 GTLAASF 243
>gi|149191147|ref|ZP_01869405.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
gi|148834985|gb|EDL51964.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
Length = 245
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 80/245 (32%), Positives = 134/245 (54%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M + A+ ++ + + ++ + T+LS P +IM T
Sbjct: 1 MPIRILLMVLTFWFSPTQAEGLTILSETNTSEGTEYSVKLQILILMTMLSFVPAFVIMCT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +ILR +G+ PPN V+I +AL T +M P + + P + IT
Sbjct: 61 SFTRIIIVLAILRQALGLQQTPPNQVLIGIALIFTLLIMRPVWTKIYDTAYVPYSTDDIT 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ +P +M + T+ K L +A + ++ I + IL+P++++SE
Sbjct: 121 LMEALASAEKPLRRYMLDQTQRKALEQVTKIAG----EKTLASDEKIPFLILLPAYLLSE 176
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF++ LPFL+ID++VA+++M+MGMMML P +SLPFK++ FV++DGW LL+ +
Sbjct: 177 LKVAFQIGFMLFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFKLLVFVIVDGWGLLMGS 236
Query: 241 LVKSF 245
L SF
Sbjct: 237 LANSF 241
>gi|288942627|ref|YP_003444867.1| flagellar biosynthetic protein FliP [Allochromatium vinosum DSM
180]
gi|288897999|gb|ADC63835.1| flagellar biosynthetic protein FliP [Allochromatium vinosum DSM
180]
Length = 249
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 103/248 (41%), Positives = 148/248 (59%), Gaps = 7/248 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHD---VMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
+ R+ L+ P LV A+ + V P + + ++ I T++++ P LI
Sbjct: 4 LARWGLVLAGLLAPGLVLAQIGGLNAVTVTTAPDGGQVYSVTLQILIIMTLMTLLPSALI 63
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
M+T F R IIV ILR G+G P N +++ LALF+T +VMSP + IQP M
Sbjct: 64 MMTSFTRIIIVLGILRQGLGTTQTPSNQILLGLALFLTLFVMSPIFQEIYDTAIQPYMEE 123
Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
Q+ A+ + +P FM TRE DL+LF + D I +LIPSF+
Sbjct: 124 QLGTEEALAKAVKPLRTFMLAQTRESDLALFAGIRGIDG----FESPDDIPLTLLIPSFV 179
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
ISEL+ +F+IGFLI++PFLIID++VA+++M+MGMMML P ISLPFK++ FVL+DGWSLL
Sbjct: 180 ISELKTAFQIGFLILIPFLIIDLVVASVLMSMGMMMLSPLIISLPFKLMLFVLVDGWSLL 239
Query: 238 VENLVKSF 245
+ L +SF
Sbjct: 240 LGTLARSF 247
>gi|149908778|ref|ZP_01897438.1| putative flagellar assembly protein [Moritella sp. PE36]
gi|149808052|gb|EDM67993.1| putative flagellar assembly protein [Moritella sp. PE36]
Length = 246
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 86/244 (35%), Positives = 137/244 (56%), Gaps = 5/244 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I F F+ A +N + ++ + T LS+ P +L+M+T
Sbjct: 6 IYLAVFLAFISLAAPAHA-DLALFSVNNGGQPQEYSIKLQLLLLMTALSLLPAMLLMLTS 64
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R ++V +ILR +G+ PPN V++ +AL +T +M P + E P + +T
Sbjct: 65 FTRIVVVLAILRQAIGLQQSPPNRVLVGIALTLTILIMRPVWTQIHEDAFLPYDSGSMTL 124
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + P FM TRE DL + + + +T D I + +L+P+F++SEL
Sbjct: 125 IEALGKAEIPLRTFMLKQTRETDLEQMLKIGNEP----PVTSVDDIPFVVLMPAFVLSEL 180
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF++ LPFL+ID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V L
Sbjct: 181 KTAFQIGFMLFLPFLVIDLVVASVLMAMGMMMLSPLIISLPFKLMIFVLVDGWAMTVGTL 240
Query: 242 VKSF 245
SF
Sbjct: 241 TASF 244
>gi|294084391|ref|YP_003551149.1| flagellar biosynthetic protein FliP [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663964|gb|ADE39065.1| flagellar biosynthetic protein FliP [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 261
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 85/224 (37%), Positives = 138/224 (61%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+V S + ++ + T L++ P L++ +T F R IIV SILR MG
Sbjct: 39 PAFNVTGSEDGTSTYSLSLQILALMTALTVLPSLVLGMTSFTRIIIVLSILRQAMGTQQT 98
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN V++++ALF+TF++M+PT + +M + P M + TA+ F+ NTR
Sbjct: 99 PPNQVLVAIALFLTFFIMAPTFTQLNDMALSPYMEGTMPMETALSDGTNIMKDFLVQNTR 158
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
DL +F +MA +T + +L+P+F+ SEL+ +F+IGFL+ LPFL+IDM+
Sbjct: 159 VTDLVMFTEMAG----DTTYEDPKDVPLTVLLPAFITSELKTAFQIGFLLFLPFLVIDMV 214
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+A+I+M++GMMML P ++LPFK++ FVL+DGW++ V +LV ++
Sbjct: 215 IASILMSLGMMMLSPMLVALPFKLLLFVLVDGWAMTVGSLVATY 258
>gi|317129193|ref|YP_004095475.1| flagellar biosynthetic protein FliP [Bacillus cellulosilyticus DSM
2522]
gi|315474141|gb|ADU30744.1| flagellar biosynthetic protein FliP [Bacillus cellulosilyticus DSM
2522]
Length = 222
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 97/223 (43%), Positives = 145/223 (65%), Gaps = 4/223 (1%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
+ + D + T V + T+LSIAP +LI++TCF R ++V S +R+G+ +P
Sbjct: 4 IPALDIFSEDPNNLTTTVSLLLLLTVLSIAPSILILMTCFTRIVVVLSFVRSGLATQQMP 63
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN V++ LALF+TF++M+P E +QP+ ++T+ A A P FM +TRE
Sbjct: 64 PNQVLVGLALFITFFIMAPVFSEVNEQALQPMFAGEMTQEEAFDAAALPMKEFMAQHTRE 123
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
KDL+LFM A T D I L+P+F ISEL+ +F+IGF+I +PFL+IDM+V
Sbjct: 124 KDLALFMGYAGLPRPET----LDDIPLTALVPAFAISELKTAFQIGFMIFIPFLVIDMVV 179
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+++M+MGMMMLPP I+LPFK++ FV++DGW L+V +L+ SF
Sbjct: 180 ASVLMSMGMMMLPPVMIALPFKILLFVMVDGWHLVVRSLLLSF 222
>gi|68164510|gb|AAY87239.1| predicted flagellar biosynthesis protein [uncultured bacterium
BAC17H8]
Length = 256
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 87/232 (37%), Positives = 141/232 (60%), Gaps = 4/232 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
P +N +D S + ++ + T L++ P L++ +T F R IIV SILR
Sbjct: 26 PAAAQVAGIPALSINEGSDGSTYSLSLQILALMTALTLLPSLVLGMTSFTRIIIVLSILR 85
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
MG PPN V++++ALF+TF++M+PTL I P ++ Q+ TA+ E
Sbjct: 86 QAMGTQQTPPNQVLVAIALFLTFFIMAPTLTTLNSDVISPYLDGQLPAETALANGTEVMK 145
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F+ NTR DL +F +M + + + +L+P+F+ SEL+ +F+IGFL+ L
Sbjct: 146 RFLVQNTRVNDLVMFTEMIG----DQPYASAEDVPLSVLLPAFITSELKTAFQIGFLLFL 201
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFL+IDM++A+I+M++GMMML P ++LPFK++ FVL+DGW++ V +LV ++
Sbjct: 202 PFLVIDMVIASILMSLGMMMLSPMLVALPFKLLLFVLVDGWAMTVGSLVATY 253
>gi|159045807|ref|YP_001534601.1| flagellar biosynthesis protein FliP [Dinoroseobacter shibae DFL 12]
gi|157913567|gb|ABV95000.1| flagellar biosynthesis protein FliP [Dinoroseobacter shibae DFL 12]
Length = 242
Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 1/228 (0%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
+ + +N+ + S+S + + T+LSIAP L IM+TCFP + V SILR G+G+
Sbjct: 16 SAGAQELAINLGDETSLSARTFQIIALITVLSIAPGLAIMITCFPFMVTVLSILRQGIGL 75
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
PPN++IISLALF+T++VM P + GIQP+++ + + EPF FM+
Sbjct: 76 QQSPPNMLIISLALFLTYFVMDPVFREAWSRGIQPMVDGAVDMEEGFRAALEPFIRFMQA 135
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
T + L+ ++ + D +LIPSF++SE+ ++F+IGFLI LPFLII
Sbjct: 136 RTDPETLARLGNLRMETAGVAPFE-LDAPPISVLIPSFLLSEIEKAFQIGFLIFLPFLII 194
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
D+IVA I+M+MGMMM+PP +SLPFK+ FFV+ DGW+LL E L++S++
Sbjct: 195 DLIVAAILMSMGMMMVPPAIVSLPFKLAFFVVADGWTLLSEALLRSYM 242
>gi|303246798|ref|ZP_07333075.1| flagellar biosynthetic protein FliP [Desulfovibrio fructosovorans
JJ]
gi|302491815|gb|EFL51695.1| flagellar biosynthetic protein FliP [Desulfovibrio fructosovorans
JJ]
Length = 252
Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 90/226 (39%), Positives = 137/226 (60%), Gaps = 4/226 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
S + + ++ T+LS+AP ++ VT F R IIVFS LR MG+
Sbjct: 29 PSLTLSLAAGQTQPERVSTLLEILFALTVLSLAPAFVLTVTSFTRIIIVFSFLRQAMGVP 88
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
VPP+ ++ SLA+F+T +M PT + +QP +N QI T A+++ P F+ +
Sbjct: 89 QVPPSQILASLAIFLTCVIMYPTGKAINDDALQPYLNEQIGFTEALKKAETPLREFLFKH 148
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TREKDLS+F + + +L F+ISEL+ +F IGFLI +PFLI+D
Sbjct: 149 TREKDLSVFYTVTKMERPKDKA----EVPTTMLAAGFIISELKTAFTIGFLIYIPFLILD 204
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M++++I++AMGMMMLPP +I++PFK++ FVL+DGW L+V ++V SF
Sbjct: 205 MVISSILLAMGMMMLPPATIAMPFKLLLFVLVDGWGLMVGSIVNSF 250
>gi|283834476|ref|ZP_06354217.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC
29220]
gi|291070023|gb|EFE08132.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC
29220]
Length = 252
Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 84/230 (36%), Positives = 133/230 (57%), Gaps = 6/230 (2%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
+ + + ++ + T++ I P L++M+TCF RFIIV S+LR
Sbjct: 22 ACAQGGDIPLLNVISHGNSQEYSVKIQVLILMTLVGILPTLVLMMTCFTRFIIVLSLLRQ 81
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G+ PPN ++I +AL +T VM P + + P N+QIT A+ A P
Sbjct: 82 ALGLQQTPPNRILIGIALSLTMLVMRPIWINIYDHAVVPFENDQITLPDALSTAASPLKR 141
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM T +K ++ M +A++ + I++P++++SEL+ +F+IGF+I +P
Sbjct: 142 FMLAQTNKKAIAQIMTIANAKG------NAADQDLSIVVPAYVLSELKTAFQIGFMIYIP 195
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
FL+ID+IVA+++MAMGMMML P +SLPFK++ FVLIDGW+L V L S
Sbjct: 196 FLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWALTVGTLTSS 245
>gi|239909255|ref|YP_002955997.1| flagellar biosynthetic protein FliP [Desulfovibrio magneticus RS-1]
gi|239799122|dbj|BAH78111.1| flagellar biosynthetic protein FliP [Desulfovibrio magneticus RS-1]
Length = 253
Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 97/248 (39%), Positives = 149/248 (60%), Gaps = 7/248 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLI 57
++ FF L P L A+ + +++ A + + ++ T+LS+AP ++
Sbjct: 7 LLALAFFGALLALPTLALAQDAPSLTLSLAAGQTSPERVSTLLEILFALTVLSLAPSFVL 66
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
VT F R I+VFS LR MG+ VPP ++ SLA+F+T +M PT + +QP MN
Sbjct: 67 TVTSFTRIIVVFSFLRQAMGVQQVPPTQILASLAIFLTAVIMYPTGKAINDNALQPYMNE 126
Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
+I T A+++ P F+ +TREKDLS+F + + +L FM
Sbjct: 127 EIGFTEALKKAEAPLREFLFKHTREKDLSVFYTITKMERPKDK----GEVPTIMLAAGFM 182
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
ISEL+ +F IGFLI +PFLI+DM++++I++AMGMMMLPP +I++PFK++ FVL+DGW L+
Sbjct: 183 ISELKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPPATIAMPFKLLLFVLVDGWGLI 242
Query: 238 VENLVKSF 245
V +LV SF
Sbjct: 243 VASLVNSF 250
>gi|157959919|ref|YP_001499953.1| flagellar biosynthesis protein FliP [Shewanella pealeana ATCC
700345]
gi|157844919|gb|ABV85418.1| flagellar biosynthetic protein FliP [Shewanella pealeana ATCC
700345]
Length = 242
Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 89/245 (36%), Positives = 136/245 (55%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M R L + +N A+ + + + T+LS P +L+M+T
Sbjct: 1 MWRVLLILLLGFSSTAYANDGLTLFTLNDGAESESVSVKLEILALMTVLSFLPAMLMMLT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R I+V ILR +G+ PPN V+I +AL MT ++M P + E P I
Sbjct: 61 SFTRIIVVLGILRQALGLQQSPPNKVLIGIALVMTIFIMRPVGEEIYEKAFLPYDQGIIE 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A++R +P FM TRE DL + +A + I + +L+P++++SE
Sbjct: 121 LPEAVERGEKPLRQFMLAQTRETDLEQMLKIADEPT----TLTAEEIPFFVLMPAYVLSE 176
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGWS+ V
Sbjct: 177 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 236
Query: 241 LVKSF 245
LV S+
Sbjct: 237 LVASY 241
>gi|309388834|gb|ADO76714.1| flagellar biosynthetic protein FliP [Halanaerobium praevalens DSM
2228]
Length = 254
Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 92/251 (36%), Positives = 148/251 (58%), Gaps = 11/251 (4%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIST-------WIVRTFGIFTILSIAPI 54
+ + F + V A+ +++ + ++ + T+LS+AP
Sbjct: 7 LVFLVFLILFSLTITVSAQDFQIPNISLEIGNGTANNQGDDLVLSLQILLLLTVLSLAPA 66
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
++I+ T F R IIVFSIL+ + + ++PPN V+I +A+F+T ++M+P + +QP
Sbjct: 67 IIILFTSFTRIIIVFSILKRALALNNMPPNQVLIGIAIFLTIFIMAPVWQGVNQDALQPY 126
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ I+ A + P FM N E+ L+LF ++A D + ILIP
Sbjct: 127 LAQDISLEQAYENTITPVREFMFNQVDERSLALFTNIAEIERP----ESRDDLPTYILIP 182
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
+F+I+E++ +F+IGFLI +PFL+IDMIVA+I+M+MGMMMLPP ISLPFK++ FVL DGW
Sbjct: 183 AFLINEIKIAFQIGFLIYIPFLMIDMIVASILMSMGMMMLPPVIISLPFKILLFVLADGW 242
Query: 235 SLLVENLVKSF 245
+L+ +LVK+F
Sbjct: 243 HILIGSLVKTF 253
>gi|73532546|dbj|BAE19831.1| flagellar biosynthesis protein [Edwardsiella tarda]
Length = 231
Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 93/233 (39%), Positives = 142/233 (60%), Gaps = 5/233 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++RY + L+ A+ + + V+T T LS P L+++T
Sbjct: 4 ILRYTLLSGLLLCAPAALAQLPGIISQPLAHGGQSWSLPVQTLVFLTSLSFLPAALLLMT 63
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +LRT G S PPN V++ LALF+TF++MSP LD+ + QP +I+
Sbjct: 64 SFTRIIIVLGLLRTP-GHPSAPPNQVLLGLALFLTFFIMSPVLDKIYQDAYQPFSEQKIS 122
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
TA+ R A+P FM TRE DL+LF +A ++ + + RIL+P+++ SE
Sbjct: 123 METALDRGAKPLRAFMLRQTRETDLALFSRLAKQP----EMQGPEDVPMRILLPAYVTSE 178
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DG
Sbjct: 179 LKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDG 231
>gi|195953030|ref|YP_002121320.1| flagellar biosynthesis protein FliP [Hydrogenobaculum sp. Y04AAS1]
gi|195932642|gb|ACG57342.1| flagellar biosynthetic protein FliP [Hydrogenobaculum sp. Y04AAS1]
Length = 252
Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 97/244 (39%), Positives = 152/244 (62%), Gaps = 5/244 (2%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPA----DLSISTWIVRTFGIFTILSIAPILLIMVTC 61
L L+ L A++ + + T +R I T+LS+AP ++IM T
Sbjct: 9 IGLLLLIFIHLAMAQNENPINVIPGIQVKFNNGNFTEAIRLILILTVLSLAPSIIIMTTS 68
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R + V S+LR +G+ +VPPN VI SLALF+TFYVM P +++ + +QP + ++IT+
Sbjct: 69 FIRIVTVLSVLRQAIGLPNVPPNQVITSLALFLTFYVMYPVINQINQNALQPYLQHKITD 128
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
IQ EP FM NT+ F+ +A + +I + + ++IP+FM+SEL
Sbjct: 129 KQFIQNTIEPIKDFMVRNTKVSTERTFL-LASNIPNKDNIKNINDLPLSVVIPAFMVSEL 187
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+F+I FL+ LPFLIIDM+V+ I++AMG++M+PPT ISLPFK++ FVL++GW L++ +L
Sbjct: 188 SIAFQIIFLLYLPFLIIDMVVSAILLAMGIIMIPPTVISLPFKIMLFVLVNGWELVILSL 247
Query: 242 VKSF 245
V+S+
Sbjct: 248 VRSY 251
>gi|332559786|ref|ZP_08414108.1| FliP2 [Rhodobacter sphaeroides WS8N]
gi|332277498|gb|EGJ22813.1| FliP2 [Rhodobacter sphaeroides WS8N]
Length = 238
Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 95/245 (38%), Positives = 145/245 (59%), Gaps = 8/245 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M + L A+S +++ S++ V+ + T+LS+ P L +M+T
Sbjct: 1 MRVLLALLVVLGGVGPAMAQS---LSLDLGDGGSLTARSVQLIAVITLLSLVPALAMMIT 57
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CFP + V SILR +G+ PPN++I+SLALF+T+YVM P + GI PL N++
Sbjct: 58 CFPFIVTVLSILRQAIGLQQAPPNMLIVSLALFLTWYVMDPVFTEAWTRGIGPLTRNELD 117
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ A PF FM L+ A + R + + +L+PSF++SE
Sbjct: 118 LPQALAAAAVPFRGFMTGRIDPDTLA-----ALQALRPGPAAPPSEVSFSVLVPSFLLSE 172
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
++R+FEIGFLI LPFLIID++V+ ++M+MGMMM+PP +S+PFK+ FFV+ DGWSL+
Sbjct: 173 IQRAFEIGFLIYLPFLIIDLVVSAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLISGA 232
Query: 241 LVKSF 245
LV+S+
Sbjct: 233 LVRSY 237
>gi|77464887|ref|YP_354391.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides 2.4.1]
gi|77389305|gb|ABA80490.1| Type III secretion system inner membrane P protein [Rhodobacter
sphaeroides 2.4.1]
Length = 239
Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 91/227 (40%), Positives = 141/227 (62%), Gaps = 5/227 (2%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
++ +++ S++ V+ + T+LS+ P L +M+TCFP + V SILR +G+
Sbjct: 17 PATAQSLSLDLGDGGSLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGL 76
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
PPN++I+SLALF+T+YVM P + GI PL N++ A+ A PF FM
Sbjct: 77 QQAPPNMLIVSLALFLTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTG 136
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
L+ A + R + + +L+PSF++SE++R+FEIGFLI LPFLII
Sbjct: 137 RIDPDTLA-----ALQALRPGPAAPPSEVSFSVLVPSFLLSEIQRAFEIGFLIYLPFLII 191
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
D++V+ ++M+MGMMM+PP +S+PFK+ FFV+ DGWSL+ LV+S+
Sbjct: 192 DLVVSAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLISGALVRSY 238
>gi|254474923|ref|ZP_05088309.1| flagellar biosynthetic protein FliP [Ruegeria sp. R11]
gi|214029166|gb|EEB70001.1| flagellar biosynthetic protein FliP [Ruegeria sp. R11]
Length = 247
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 94/233 (40%), Positives = 141/233 (60%), Gaps = 6/233 (2%)
Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
P A+ +++ S+S ++ + T+LS+AP LLIMVTCFP + V SIL
Sbjct: 19 LPGFAAAQD---LSLSLGDGQSLSARSIQLILLITVLSLAPGLLIMVTCFPFLVTVLSIL 75
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R +G+ PPN+++ISLALF+T++VM P + + + GI PL+ QI T ++R PF
Sbjct: 76 RQAIGLQQAPPNMMMISLALFLTYFVMEPVFNEAWQTGINPLIEEQIDVETGMERALVPF 135
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
FM F +A I L+ SF++SE+ R+F++GFL+
Sbjct: 136 REFMAARLDPD---TFYAIADLRPGTAGIDPTPDAPLSTLVSSFLLSEIARAFQVGFLVF 192
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LPFL+ID++VA ++M+MGMMM+PP +SLPFK+ FFV+ DGWSL+ LV+S+
Sbjct: 193 LPFLVIDLVVAAVLMSMGMMMVPPAVVSLPFKLAFFVVADGWSLIASALVRSY 245
>gi|149928152|ref|ZP_01916398.1| flagellar biosynthesis protein P [Limnobacter sp. MED105]
gi|149823137|gb|EDM82375.1| flagellar biosynthesis protein P [Limnobacter sp. MED105]
Length = 256
Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats.
Identities = 102/231 (44%), Positives = 146/231 (63%), Gaps = 6/231 (2%)
Query: 17 VFAKSSLHDVMNIPA--DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
A+ L V P + + ++T FT LS P LL+M+T F R +IV S+LR
Sbjct: 28 AQAQQVLPGVTATPGANGTTNYSVPIQTLLFFTFLSFLPALLLMMTGFTRIVIVMSLLRM 87
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G + PPN VII L++F+TF++M+P DR E P NN+I +R + P
Sbjct: 88 ALGTQNSPPNQVIIGLSMFLTFFIMAPVFDRVYENAYLPFSNNEIEFQEMTERASVPMKD 147
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM TRE DL+LFM + + + + + R+LIP+F+ SEL+ +F+IGF+I LP
Sbjct: 148 FMLKQTREPDLALFMRLGKVEN----VENPEDVPLRVLIPAFVTSELKTAFQIGFMIFLP 203
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FL+ID+IVA+++M+MGMMML P ISLPFK++ FVL+DGW+LLV +LV SF
Sbjct: 204 FLVIDLIVASVLMSMGMMMLSPMLISLPFKIMLFVLVDGWTLLVGSLVASF 254
>gi|71282453|ref|YP_268254.1| flagellar biosynthesis protein FliP [Colwellia psychrerythraea 34H]
gi|71148193|gb|AAZ28666.1| flagellar biosynthetic protein FliP [Colwellia psychrerythraea 34H]
Length = 252
Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats.
Identities = 90/244 (36%), Positives = 135/244 (55%), Gaps = 7/244 (2%)
Query: 5 CFFALFLVTPELVFAKS---SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
L FA+ S + P + ++ T LS P +IM+T
Sbjct: 9 ILTLCLLSMSFGAFAEDLSLSALTLTTNPDGSQEYSVNLQILIFMTALSFIPAAVIMMTS 68
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R ++V +ILR G+ P N VII L LFMT ++M+P ++ IQP ++ +T
Sbjct: 69 FTRIVVVMAILRQAFGLQQTPSNQVIIGLTLFMTLFIMTPVYNQIDRTAIQPYLSENLTS 128
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T AI P FM TR KDL MA + + + ++IP+F+ISEL
Sbjct: 129 TEAINLGKIPLRAFMLEQTRVKDLDTLAAMAGI----DAVDEPTDLPMTVIIPAFIISEL 184
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF++ +PFLIID++VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L++ +
Sbjct: 185 KTAFQIGFILFIPFLIIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLVIGTI 244
Query: 242 VKSF 245
S+
Sbjct: 245 ATSY 248
>gi|304392500|ref|ZP_07374440.1| flagellar biosynthetic protein FliP [Ahrensia sp. R2A130]
gi|303295130|gb|EFL89490.1| flagellar biosynthetic protein FliP [Ahrensia sp. R2A130]
Length = 259
Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats.
Identities = 124/258 (48%), Positives = 168/258 (65%), Gaps = 13/258 (5%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMN--------IPADLSISTWIVRTFGIFTILSIA 52
MI AL L P + ++ S+S I++ FG+ T+LS+A
Sbjct: 1 MIAGLLLALVLTGPAYAQTSPDVLGDLSRLLGSGTEATGSPSVSGQIIQLFGLVTVLSLA 60
Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
P +LI+VT F RFII FSILR G+G+ S P NL++ISL+LFMTF+VMS T + + G
Sbjct: 61 PGILIVVTSFTRFIIAFSILRMGLGLQSTPANLILISLSLFMTFHVMSATFQTAWDKGAG 120
Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT-----DITKNDHI 167
PL +ITE A+ ++ EPF FM N R +D++LF D+ + + D +
Sbjct: 121 PLSRGEITEAQAVTQIIEPFRTFMLANVRGEDIALFTDLQNERAVADGVAVPETAAADEV 180
Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
L+P+FMISE+RR FEIGFLI+LPFL+ID+IVATIVMAMGMMMLPPT ++LPFK++F
Sbjct: 181 AITALVPAFMISEIRRGFEIGFLILLPFLVIDLIVATIVMAMGMMMLPPTVVALPFKILF 240
Query: 228 FVLIDGWSLLVENLVKSF 245
FVLIDGW+LLV +L++SF
Sbjct: 241 FVLIDGWNLLVGSLLRSF 258
>gi|325474550|gb|EGC77736.1| flagellar biosynthetic protein fliP [Treponema denticola F0402]
Length = 259
Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats.
Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 6/228 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + P+ + V+ T++SIAP LL+++T F R IV ++ + +
Sbjct: 36 PFIDFSIREPSTNKDVAFSVQLLIFITLISIAPSLLLLMTSFLRLSIVLDFVKRALSLQQ 95
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
VPP V+ +A F+T ++M PT + +P+ QI A + +P FM
Sbjct: 96 VPPTQVLNGIAFFLTLFIMWPTFTQIYNNAYKPMSEGQIGIEEAYREAEKPMRYFMYKQM 155
Query: 141 --REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
+ FM M+ +T + ILI +F++ EL +F+IG + LPF+II
Sbjct: 156 QKNPAHIRTFMAMSKLPKPDT----LADVPTHILIAAFILHELTIAFQIGIFLYLPFIII 211
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
DMIVA+I+M+MGM+MLPP IS+PFK+I FV++DGW LL L +SF+
Sbjct: 212 DMIVASILMSMGMIMLPPVQISMPFKLILFVMVDGWGLLFGKLFESFL 259
>gi|219670147|ref|YP_002460582.1| flagellar biosynthesis protein FliP [Desulfitobacterium hafniense
DCB-2]
gi|219540407|gb|ACL22146.1| flagellar biosynthetic protein FliP [Desulfitobacterium hafniense
DCB-2]
Length = 259
Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats.
Identities = 103/245 (42%), Positives = 158/245 (64%), Gaps = 6/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + + LV + V A D A+ ++ ++ + T++SIAP +L+++T
Sbjct: 20 LLFFLIWGGILVNTDSVLAAGLTLDFGTTTAE--QTSSTLQILLLLTVISIAPAILVLMT 77
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV S +R +G +PPN V+I L+LF+TF+VM+PT + +QP M NQIT
Sbjct: 78 SFTRTIIVLSFVRNALGTQQLPPNQVLIGLSLFLTFFVMAPTWNEINTQALQPYMQNQIT 137
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A+Q+ P FM TREKDL+LF+ +A T I +LIP+F+ISE
Sbjct: 138 QAEALQQAEAPLRQFMFEQTREKDLTLFVGLARMEQPQTY----GDIPTYVLIPAFVISE 193
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F++GF I +PF++IDM+VA+++M+MGMMMLPP +SLPFK++ FVL+DGW L+V++
Sbjct: 194 LKTAFQMGFAIFIPFMVIDMLVASVLMSMGMMMLPPMMVSLPFKILLFVLVDGWHLVVQS 253
Query: 241 LVKSF 245
LV SF
Sbjct: 254 LVTSF 258
>gi|254487121|ref|ZP_05100326.1| flagellar biosynthetic protein FliP [Roseobacter sp. GAI101]
gi|214043990|gb|EEB84628.1| flagellar biosynthetic protein FliP [Roseobacter sp. GAI101]
Length = 245
Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats.
Identities = 100/240 (41%), Positives = 150/240 (62%), Gaps = 6/240 (2%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
AL + P A+ +++ ++S ++ F + T+LS+AP + +MVTCFP
Sbjct: 11 LAALLVFLPGFPLAQEV---SIDLGDQGALSARTIQLFVLITVLSLAPGIAVMVTCFPFL 67
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+ V SILR +G+ PPN++I+SLALF+T+++M P + E G++PL N QI TA
Sbjct: 68 VTVLSILRQAIGLQQSPPNMLIVSLALFLTYFIMEPVFTAAWENGLEPLANEQIDVETAF 127
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+ EPF FM D + F MA + + +L+PSFM+SE+ R+F
Sbjct: 128 AQAMEPFRQFMVGRL---DPATFTAMAELRPDTAGLALDLDAPLSVLVPSFMLSEITRAF 184
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+IGFL+ LPFLIID++VA I+M+MGMMM+PP +SLPFK+ FFV+ DGWSL+ +LV+S+
Sbjct: 185 QIGFLVYLPFLIIDLVVAAILMSMGMMMVPPAVVSLPFKLAFFVVADGWSLIAGSLVRSY 244
>gi|255322335|ref|ZP_05363481.1| flagellar biosynthetic protein FliP [Campylobacter showae RM3277]
gi|255300708|gb|EET79979.1| flagellar biosynthetic protein FliP [Campylobacter showae RM3277]
Length = 246
Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats.
Identities = 106/249 (42%), Positives = 159/249 (63%), Gaps = 8/249 (3%)
Query: 1 MIRYCFFALFLVTPELVFAK----SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
M + F F+ + +++ ++ P + + + T+L++AP L+
Sbjct: 1 MKKLTFLLFFIFAAVAIGEDNVTIPTVNLSLSAPTTPTQLVSSLNVLLVLTVLTLAPSLV 60
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
M+T F R IIVFS LR MG +PP+ V+ISLA+ +TF++M P ++ E G+QP ++
Sbjct: 61 FMMTSFLRLIIVFSFLRQAMGTQQMPPSTVLISLAMVLTFFIMEPVGKQAYEAGVQPYLS 120
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
QI A +R +PF FM NTREKDL+LF+ + + + D I +++ +F
Sbjct: 121 EQIGYQEAFERGVKPFREFMIKNTREKDLALFLRIRNMPNP----QSFDDIPLTVVMSAF 176
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
MISE++ +FEI FL+ LPFL+IDM+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+L
Sbjct: 177 MISEMKTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNL 236
Query: 237 LVENLVKSF 245
LV NLVKSF
Sbjct: 237 LVMNLVKSF 245
>gi|163794138|ref|ZP_02188111.1| Flagellar biosynthesis pathway [alpha proteobacterium BAL199]
gi|159180752|gb|EDP65271.1| Flagellar biosynthesis pathway [alpha proteobacterium BAL199]
Length = 253
Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats.
Identities = 112/235 (47%), Positives = 156/235 (66%), Gaps = 6/235 (2%)
Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
+ V A+S D+ S + +++ T+LS+AP +L+MVT F R +IV
Sbjct: 20 FLWGSPVLAQSLTLDLGEP--GGSTTARLIQLVLTVTLLSLAPGILVMVTSFTRIVIVLG 77
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
+LRT +G PPNLV+ISLALF+T ++M+PTL + G+QPL+ +I E A V +
Sbjct: 78 LLRTALGTQQSPPNLVMISLALFLTGFIMTPTLKEAWTNGVQPLIEERIDEIEAFDAVVQ 137
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
PF FM REKDL LF DMA T + ++LIP+FMISELRR+FEIGFL
Sbjct: 138 PFRGFMLRTVREKDLRLFEDMAQVGPAETGLNA----PLQVLIPAFMISELRRAFEIGFL 193
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ LPF+IIDM++A+++M+MGMMM+PP ISLPFK+IFFVL+DGW ++ +LV+SF
Sbjct: 194 LYLPFVIIDMVIASVLMSMGMMMVPPVMISLPFKLIFFVLVDGWYMIAGSLVRSF 248
>gi|78777215|ref|YP_393530.1| flagellar biosynthesis protein FliP [Sulfurimonas denitrificans DSM
1251]
gi|78497755|gb|ABB44295.1| Flagellar transport protein FliP [Sulfurimonas denitrificans DSM
1251]
Length = 246
Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats.
Identities = 95/243 (39%), Positives = 148/243 (60%), Gaps = 4/243 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ + + A +++ ++ P + + T+L +AP +++++T
Sbjct: 6 LSILMLSAISLFGADSVAIPTMNFELSAPKTPEQLVSSLNVLVLLTLLFLAPSMVLVMTT 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F RF+IVF LR +G VPP +++ L + +TF+VM P ++ E GI+P + +I
Sbjct: 66 FTRFVIVFGFLRQALGTQQVPPTQLLVMLGMILTFFVMEPVGIKAYEDGIKPYIEEKIGY 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A + A PF FM NTREKDL+LF + + T + I+IP+F+ISEL
Sbjct: 126 EEAFDKTALPFKNFMIRNTREKDLALFFRIRKMQNPTTIA----EVPLSIIIPAFVISEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP I+LPFK++ F+LIDGW+LL+ NL
Sbjct: 182 KTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMIALPFKILIFILIDGWNLLIGNL 241
Query: 242 VKS 244
+ S
Sbjct: 242 IAS 244
>gi|89056669|ref|YP_512120.1| flagellar biosynthesis protein FliP [Jannaschia sp. CCS1]
gi|88866218|gb|ABD57095.1| flagellar biosynthetic protein FliP [Jannaschia sp. CCS1]
Length = 243
Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats.
Identities = 96/244 (39%), Positives = 147/244 (60%), Gaps = 7/244 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ C L+ A + +++ S++ + + ++LS+AP L +MVTC
Sbjct: 6 LTRCLVVAALLAISWPSAAIAQEISLDLGDGSSLTARSFQLIALISVLSLAPGLAVMVTC 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
FP + V SILR +G+ PPN++I+SLALF+T++VM+P + + GI PL+ ++T
Sbjct: 66 FPFVVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFVMAPVFEEAYRAGIAPLIAGELTP 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
AI + EPF FM N L ++ D D +LIPSFM+SE+
Sbjct: 126 DAAIPLIYEPFRGFMLNRVDTSTLVSLAEL----RPGADAANPDP---SVLIPSFMLSEV 178
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
R+F+IGFL+ LPFL+ID++VA I+M+MGMMM+PP +SLPFK+ FFV+ DGW+L+ L
Sbjct: 179 ERAFQIGFLVFLPFLVIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVVADGWALITGAL 238
Query: 242 VKSF 245
V+S+
Sbjct: 239 VRSY 242
>gi|114562370|ref|YP_749883.1| flagellar biosynthesis protein FliP [Shewanella frigidimarina NCIMB
400]
gi|114333663|gb|ABI71045.1| flagellar biosynthetic protein FliP [Shewanella frigidimarina NCIMB
400]
Length = 253
Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats.
Identities = 85/244 (34%), Positives = 142/244 (58%), Gaps = 7/244 (2%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIP---ADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ A+ + + + + + ++ + T +S P ++IM+T
Sbjct: 12 MMALVALILSPTALAQDGVLPALTVTTAADGTTEYSVTMQILLLMTAMSFIPAMVIMLTS 71
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+V SILR +G+ P N V+I ++LFMTF++M+P D+ ++P +N +T
Sbjct: 72 FTRIIVVLSILRQALGLQQTPSNQVLIGISLFMTFFIMAPVFDKIYAEAVEPYINETMTL 131
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
T A EP FM + R DL F++++ DI + ++IP+F+ SEL
Sbjct: 132 TQAYDVGKEPIKTFMLSQVRTTDLQTFIEISGY----KDIQSPEQAPMSVVIPAFITSEL 187
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW L++ L
Sbjct: 188 KTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVMGTL 247
Query: 242 VKSF 245
SF
Sbjct: 248 ANSF 251
>gi|168704086|ref|ZP_02736363.1| flagellar biosynthetic protein FliP [Gemmata obscuriglobus UQM
2246]
Length = 224
Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats.
Identities = 79/217 (36%), Positives = 134/217 (61%), Gaps = 5/217 (2%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ + V+T + + ++ P L+ +TCF R +IV S +R G+G +VPPNLV+
Sbjct: 12 NGLNFQNLSPPVQTALMLGLSALLPAALMTMTCFTRVVIVLSFVRQGLGAQNVPPNLVLT 71
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+T +VM PT + QP + QIT A + + + FM TR++DL+LF
Sbjct: 72 GLALFITLFVMQPTFAEIDQKAYQPYLQKQITGPQAFKTGTDIYKQFMLRQTRKQDLALF 131
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ ++ + + K + + ++P+F+ISEL+ +F +GF I LPFL++D++V++++ +
Sbjct: 132 LHLSKHT-----VEKAEDAPFLTVVPAFLISELKTAFIMGFCIYLPFLMVDLVVSSVLTS 186
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGM+M+PP +IS PFK++ FVL DGW L+ + S+
Sbjct: 187 MGMVMMPPVTISAPFKILLFVLADGWHLVTYAIALSY 223
>gi|323975949|gb|EGB71043.1| FliP family protein [Escherichia coli TW10509]
Length = 250
Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats.
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N+QIT T A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTLLVMRPVWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------NAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|116626498|ref|YP_828654.1| flagellar biosynthesis protein FliP [Candidatus Solibacter usitatus
Ellin6076]
gi|116229660|gb|ABJ88369.1| flagellar biosynthetic protein FliP [Candidatus Solibacter usitatus
Ellin6076]
Length = 245
Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats.
Identities = 74/226 (32%), Positives = 138/226 (61%), Gaps = 4/226 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
+ ++ + + ++ + T++++ P ++ +T F R ++V LR +G
Sbjct: 23 EPFSLLGISAGKNGVSLSVPMQIVILLTLMTLLPAAVMSITPFLRIVVVLHFLRQALGTQ 82
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
S P N V+I LALF+ VM P + G +P+ Q++ A+++ + P F+
Sbjct: 83 STPSNQVLIGLALFLALLVMQPVIADMYHQGWEPMEAGQLSPERALEQGSVPLHNFLAKF 142
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
REKD+ LF++++H+ T +E ++LIP++++SEL+ F+IG ++ LPFLIID
Sbjct: 143 AREKDIHLFVEISHAPAPRTPA----DLEMKVLIPAYILSELKTGFQIGAVLFLPFLIID 198
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+++A++ +++GM+ LPP IS PFK++ FVL+DGW+L+V +L++SF
Sbjct: 199 LVIASVTLSIGMVQLPPVMISAPFKILLFVLVDGWNLVVGSLMRSF 244
>gi|283784010|ref|YP_003363875.1| lateral flagellar export/assembly protein [Citrobacter rodentium
ICC168]
gi|282947464|emb|CBG87011.1| lateral flagellar export/assembly protein [Citrobacter rodentium
ICC168]
Length = 252
Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats.
Identities = 85/245 (34%), Positives = 137/245 (55%), Gaps = 8/245 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADL--SISTWIVRTFGIFTILSIAPILLIMV 59
+ A+ ++N+ + ++ + T++ + P L++M+
Sbjct: 7 LTLALGIALFALSPFACAQGGEIPLLNVVTHGASQEYSVKIQVLILMTLVGLLPTLVLMM 66
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P + + P N+Q+
Sbjct: 67 TCFTRFIIVLSLLRQALGLQQTPPNRILIGIALCLTMLVMRPIWLNIYDRAVVPFENDQM 126
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
T + A+ A P FM T +K ++ M +A + I++P++++S
Sbjct: 127 TLSDALSTAATPLKRFMLAQTNKKAMAQIMTIADVKG------DAADQDLTIVVPAYVLS 180
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL V
Sbjct: 181 ELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTVG 240
Query: 240 NLVKS 244
L S
Sbjct: 241 TLTSS 245
>gi|223040127|ref|ZP_03610407.1| flagellar biosynthetic protein FliP [Campylobacter rectus RM3267]
gi|222878604|gb|EEF13705.1| flagellar biosynthetic protein FliP [Campylobacter rectus RM3267]
Length = 246
Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats.
Identities = 104/249 (41%), Positives = 158/249 (63%), Gaps = 8/249 (3%)
Query: 1 MIRYCFFALFLVTPELVFAK----SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
M + F F+ + +++ ++ P + + + T+L++AP L+
Sbjct: 1 MKKLTFLLFFIFAAVAIGEDNVTIPTVNLSLSAPTTPTQLVSSLNVLLVLTVLTLAPSLV 60
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
M+T F R IIVFS LR MG +PP+ V+ISLA+ +TF++M P ++ E G++P +
Sbjct: 61 FMMTSFLRLIIVFSFLRQAMGTQQMPPSTVLISLAMVLTFFIMEPVGKQAYEAGVRPYLG 120
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
QI A +R +PF FM NTREKDL+LF+ + + + D I +++ +F
Sbjct: 121 EQIGYQEAFERGVKPFREFMIKNTREKDLALFLRIRNMPNP----QSFDDIPLTVVMSAF 176
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
MISE++ +FEI FL+ LPFL+IDM+V++++MAMGMMMLPPT ISLPFK++ F+L+DGW+L
Sbjct: 177 MISEMKTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFKLLIFILVDGWNL 236
Query: 237 LVENLVKSF 245
LV NLVKSF
Sbjct: 237 LVMNLVKSF 245
>gi|85706151|ref|ZP_01037246.1| flagellar biosynthetic protein FliP [Roseovarius sp. 217]
gi|85669315|gb|EAQ24181.1| flagellar biosynthetic protein FliP [Roseovarius sp. 217]
Length = 245
Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats.
Identities = 98/230 (42%), Positives = 145/230 (63%), Gaps = 3/230 (1%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
A + ++I D S+S ++ + T+LS+AP + IMVTCFP + V SILR G+
Sbjct: 19 APAALAQEISLSIGDDASLSARTIQIIALITVLSLAPGIAIMVTCFPFIVTVLSILRQGI 78
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G+ PPN++I+SLALF+T++VM P + GI+PL+ +++ A + V PF FM
Sbjct: 79 GLQQSPPNMLIVSLALFLTYFVMEPVFTEAWTNGIEPLLEERLSPERATEMVIAPFRQFM 138
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
D F MA + +LIPSFM+SE+ R+F+IGFL+ LPFL
Sbjct: 139 LGRV---DPETFASMAALRPEASVTVAGSDAPLSVLIPSFMLSEIARAFQIGFLVFLPFL 195
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ID++VA I+M+MGMMM+PP +SLPFK+ FFV+ DGW+L+ E+LVK ++
Sbjct: 196 VIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGWTLIAESLVKGYM 245
>gi|42528260|ref|NP_973358.1| flagellar biosynthesis protein FliP [Treponema denticola ATCC
35405]
gi|7387675|sp|Q9X5A6|FLIP_TREDE RecName: Full=Flagellar biosynthetic protein fliP
gi|4426951|gb|AAD20625.1| flagellar export protein FliP [Treponema denticola]
gi|41819530|gb|AAS13277.1| flagellar biosynthesis protein FliP [Treponema denticola ATCC
35405]
Length = 271
Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats.
Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 6/228 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + P+ + V+ T++SIAP LL+++T F R IV ++ + +
Sbjct: 48 PFIDFSIREPSTNKDVAFSVQLLIFITLISIAPSLLLLMTSFLRLSIVLDFVKRALSLQQ 107
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
VPP V+ +A F+T ++M PT + +P+ QI A + +P FM
Sbjct: 108 VPPTQVLNGIAFFLTLFIMWPTFTQIYNNAYKPMSEGQIGIEEAYREAEKPMRYFMYKQM 167
Query: 141 --REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
+ FM M+ +T + ILI +F++ EL +F+IG + LPF+II
Sbjct: 168 QKNPTHIRTFMAMSKLPKPDT----LADVPTHILIAAFILHELTIAFQIGIFLYLPFIII 223
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
DMIVA+I+M+MGM+MLPP IS+PFK+I FV++DGW LL L +SF+
Sbjct: 224 DMIVASILMSMGMIMLPPVQISMPFKLILFVMVDGWGLLFGKLFESFL 271
>gi|163781853|ref|ZP_02176853.1| flagellar biosynthetic protein FliP [Hydrogenivirga sp. 128-5-R1-1]
gi|159883073|gb|EDP76577.1| flagellar biosynthetic protein FliP [Hydrogenivirga sp. 128-5-R1-1]
Length = 225
Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats.
Identities = 92/224 (41%), Positives = 141/224 (62%), Gaps = 1/224 (0%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
+ + + +R + TIL++AP +LIM T F R ++V S+LR +G+ VP
Sbjct: 1 MIPPIELKVGEGNLDTSLRLLILLTILALAPSILIMTTSFIRIVVVLSVLRQALGVPQVP 60
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN VI+SLALF+TF++M P + +QP M QI++ RV FM TR+
Sbjct: 61 PNQVIVSLALFLTFFIMKPVFENINTNALQPYMKEQISDQEFFNRVTGSLKGFMLKQTRK 120
Query: 143 KDLSLFMDMAHSSHRNTD-ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+ +FM++A + I K I ILIP+FM+SEL +FEI FL+ +PFLI+D++
Sbjct: 121 DTVEVFMEVAKLKKEEREKIRKPSDIPLSILIPAFMVSELTTAFEIVFLLYIPFLIVDIV 180
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+I+++MG++M+PP ISLPFK++ FVL +GW L+V +LV+S+
Sbjct: 181 VASILISMGIIMIPPQIISLPFKIMLFVLANGWELVVLSLVRSY 224
>gi|220934504|ref|YP_002513403.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. HL-EbGR7]
gi|219995814|gb|ACL72416.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. HL-EbGR7]
Length = 247
Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats.
Identities = 92/245 (37%), Positives = 146/245 (59%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+ AL+L+ + +V P + ++ + T+LS+ P LIM+T
Sbjct: 5 LSLLGVAALWLLAGPAAAQGLDVLNVTTAPDGAQTYSVTLQILILMTLLSLLPSALIMMT 64
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +ILR G+G P N ++I LALF+T +VM+P DR IQP M ++
Sbjct: 65 SFTRIIIVLAILRQGLGTTQTPSNQILIGLALFLTLFVMTPVFDRIHVEAIQPYMEESLS 124
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+Q ++P FM TRE DL++F ++ + + + +L+ SF+ SE
Sbjct: 125 MEEAVQTASQPIRQFMLAQTRESDLAMFARISGREG----FESPEDVPFTLLMASFLTSE 180
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF++++PFLIID++VA+++M+MGM+ML P ISLPFK++ FVL+DGW+L++
Sbjct: 181 LKTAFQIGFMLLIPFLIIDLVVASVLMSMGMVMLSPLIISLPFKIMLFVLVDGWALIMGT 240
Query: 241 LVKSF 245
L SF
Sbjct: 241 LAASF 245
>gi|221640808|ref|YP_002527070.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides KD131]
gi|221161589|gb|ACM02569.1| Type III secretion system inner membrane P protein [Rhodobacter
sphaeroides KD131]
Length = 238
Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats.
Identities = 93/229 (40%), Positives = 143/229 (62%), Gaps = 5/229 (2%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
V ++ +++ S++T V+ + T+LS+ P L +M+TCFP + V SILR +
Sbjct: 14 VGPAAAQSLSLDLGDSGSLATRSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAI 73
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G+ PPN++I+SLALF+T+YVM P + GI PL N++ A+ A PF FM
Sbjct: 74 GLQQAPPNMLIVSLALFLTWYVMDPVFTEAWTKGIAPLTRNELDLPQALAAAAIPFRSFM 133
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
L+ A + R + + +L+PSF++SE++R+FEIGFLI LPFL
Sbjct: 134 AGRIDPDTLA-----ALQALRPGPAAPPSEVSFSVLVPSFLLSEIQRAFEIGFLIYLPFL 188
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IID++V+ ++M+MGMMM+PP +S+PFK+ FFV+ DGWSL+ LV+S+
Sbjct: 189 IIDLVVSAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLISGALVRSY 237
>gi|149203108|ref|ZP_01880079.1| flagellar biosynthetic protein FliP [Roseovarius sp. TM1035]
gi|149143654|gb|EDM31690.1| flagellar biosynthetic protein FliP [Roseovarius sp. TM1035]
Length = 245
Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats.
Identities = 102/243 (41%), Positives = 151/243 (62%), Gaps = 3/243 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
L L + +++ D S+S ++ + T+LS+AP + IMVTCFP
Sbjct: 6 ILIGLSTLFLGALATGAPAQDLTLSLGDDASLSARTLQLIALITVLSLAPGIAIMVTCFP 65
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
+ V SILR G+G+ PPN++I+SLALF+TF+VM P ++ E GI+PL+ +++
Sbjct: 66 FVVTVLSILRQGIGLQQSPPNMLIVSLALFLTFFVMEPVFTQAWETGIEPLLQERLSPDL 125
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
AI+R PF VFM L+ A T ++ ILIPSFM+SE+ R
Sbjct: 126 AIERTLAPFRVFMLGRVDPDTLATI---AALRPETTTLSAGPDAPLSILIPSFMLSEIAR 182
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGFL+ LPFLIID++VA I+M+MGMMM+PP +SLPFK+ FFV+ DGW+L+ E+LV+
Sbjct: 183 AFQIGFLVFLPFLIIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGWTLIAESLVR 242
Query: 244 SFI 246
++
Sbjct: 243 GYL 245
>gi|188025878|ref|ZP_02997695.1| hypothetical protein PROSTU_02049 [Providencia stuartii ATCC 25827]
gi|188020828|gb|EDU58868.1| hypothetical protein PROSTU_02049 [Providencia stuartii ATCC 25827]
Length = 185
Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats.
Identities = 89/187 (47%), Positives = 130/187 (69%), Gaps = 4/187 (2%)
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R IIV +LR +G S PPN V++ LALF+TF+VMSP D++ QP ++
Sbjct: 1 MTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQAYREAYQPFSEDK 60
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
I+ TA++R PF FM TRE DL+LF +A +I + + RIL+P+F+
Sbjct: 61 ISLETALERGTAPFRTFMLGQTRESDLALFARIAKVG----EIQEAKDVPMRILVPAFIT 116
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW LL+
Sbjct: 117 SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLL 176
Query: 239 ENLVKSF 245
+L +SF
Sbjct: 177 GSLSQSF 183
>gi|327254531|gb|EGE66147.1| flagellar biosynthetic protein FliP [Escherichia coli STEC_7v]
Length = 250
Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats.
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N+QIT T A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTLLVMRPVWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------NAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|220913717|ref|YP_002489026.1| flagellar biosynthetic protein FliP [Arthrobacter chlorophenolicus
A6]
gi|219860595|gb|ACL40937.1| flagellar biosynthetic protein FliP [Arthrobacter chlorophenolicus
A6]
Length = 262
Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats.
Identities = 87/225 (38%), Positives = 135/225 (60%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
S + + I + V T T+LS+AP LL+M+T F + +V ++ R + + S
Sbjct: 41 GSGNVSIEINGLDGQPSTAVVTLIGITLLSVAPALLLMMTSFTKIFVVLAMTRNALSLPS 100
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN V+ LALF++ +VM P L +QP +N + A A P FM +T
Sbjct: 101 IPPNQVLAGLALFLSLFVMWPVLTEINTDAVQPYLNGNLDFNGAFSAGAGPLQQFMLGHT 160
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE+D++L A + + + LIP+FMISELR +F IGF+I +PFL+ID+
Sbjct: 161 REEDIALMTRAARMPNP----ENPGAVPLQTLIPAFMISELRAAFIIGFVIFIPFLVIDL 216
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+V+ +M+MGMMMLPP ISLPFK++ F+L+DGW L++ +L++S+
Sbjct: 217 VVSAALMSMGMMMLPPVMISLPFKILLFILVDGWGLVITSLIQSY 261
>gi|218703506|ref|YP_002411025.1| flagellar biosynthesis protein FliP [Escherichia coli UMN026]
gi|293403337|ref|ZP_06647428.1| fliP [Escherichia coli FVEC1412]
gi|298378948|ref|ZP_06988829.1| fliP [Escherichia coli FVEC1302]
gi|300898060|ref|ZP_07116429.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1]
gi|59889762|emb|CAH19117.1| Lateral flagellar export/assembly protein (FliP-like) [Escherichia
coli]
gi|218430603|emb|CAR11469.1| Lateral flagellar export/assembly protein, FliP-like [Escherichia
coli UMN026]
gi|284920026|emb|CBG33082.1| lateral flagellar export/assembly protein (FliP-like) [Escherichia
coli 042]
gi|291429190|gb|EFF02210.1| fliP [Escherichia coli FVEC1412]
gi|298280061|gb|EFI21565.1| fliP [Escherichia coli FVEC1302]
gi|300358238|gb|EFJ74108.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1]
Length = 250
Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats.
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N+QIT T A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTMLVMRPVWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------NAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|291562035|emb|CBL40851.1| flagellar biosynthetic protein FliP [butyrate-producing bacterium
SS3/4]
Length = 218
Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats.
Identities = 79/213 (37%), Positives = 131/213 (61%), Gaps = 4/213 (1%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
+ + + T ++ P +++M++ F R II+ S R MG+ PPN+V+ +AL
Sbjct: 9 NGGNVPALDIIMLLTFAALLPSIVVMMSSFMRIIIILSFTRNAMGVQQTPPNMVLTGMAL 68
Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
F++ Y+MSP + + + +P N +IT+ A+ R+A+P FM NT + L F+ M+
Sbjct: 69 FLSLYIMSPVIGQINTVAYEPYKNGEITQQEAVSRMADPLKQFMLRNTEKDTLDHFVQMS 128
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ +++P+FM SEL++ F GFLI LPFL+ID++V+T +M+MGM+
Sbjct: 129 KQEVKK----DVKEYPLTVVVPAFMTSELKKGFLAGFLIYLPFLLIDIVVSTTLMSMGMV 184
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MLPPT +SLPFK++ F+ ++GW LL +LV+SF
Sbjct: 185 MLPPTMVSLPFKLLLFITVNGWELLFSSLVQSF 217
>gi|170684182|ref|YP_001742352.1| flagellar biosynthesis protein FliP [Escherichia coli SMS-3-5]
gi|170521900|gb|ACB20078.1| lateral flagellar export/assembly protein LfiP [Escherichia coli
SMS-3-5]
Length = 250
Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats.
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N+QIT T A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTMLVMRPVWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------NAADQDLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|323191516|gb|EFZ76777.1| flagellar biosynthetic protein FliP [Escherichia coli RN587/1]
Length = 250
Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N+QIT T A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTLLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------NAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|306813325|ref|ZP_07447518.1| flagellar biosynthesis protein FliP [Escherichia coli NC101]
gi|305854088|gb|EFM54527.1| flagellar biosynthesis protein FliP [Escherichia coli NC101]
Length = 250
Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N+QIT T A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTLLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------NAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|94495439|ref|ZP_01302019.1| flagellar transport protein [Sphingomonas sp. SKA58]
gi|94424827|gb|EAT09848.1| flagellar transport protein [Sphingomonas sp. SKA58]
Length = 255
Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 89/221 (40%), Positives = 137/221 (61%), Gaps = 4/221 (1%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
+ + D + ++ + ++L++ P L++M+T F R IIV S+LR +G+ PPN
Sbjct: 37 ALGQVSGDGRSLSLSLQILILMSLLTVLPSLVLMMTSFTRIIIVLSLLRQALGLQQTPPN 96
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
V++ LALF++ +VM P +D P QI+ A+ R A+ FM TRE D
Sbjct: 97 QVLVGLALFLSLFVMRPAIDTINAQAFDPYGKGQISIEEAVGRSAKVLHGFMSKQTRESD 156
Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
L LF ++A + I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+
Sbjct: 157 LKLFANLAQAP----AFRTPADIPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVAS 212
Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+MA+GMMML PT IS+PFK++ FVL+DGW+L + +L SF
Sbjct: 213 TLMALGMMMLSPTIISMPFKLLLFVLVDGWALTMGSLAGSF 253
>gi|34558376|ref|NP_908191.1| flagellar biosynthesis protein FliP [Wolinella succinogenes DSM
1740]
gi|34484095|emb|CAE11091.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Wolinella succinogenes]
Length = 247
Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 100/225 (44%), Positives = 149/225 (66%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ + P D + + T+L +AP L++++T F R IIVFS LRT MG
Sbjct: 26 PTVNLSIGAPTDPGDLVSTLNIVVVLTLLVLAPSLVLVMTSFTRLIIVFSFLRTAMGTQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PP +++SLA+ +TF++M P +S E+GI+P + +I A + PF FM NT
Sbjct: 86 SPPTQLLVSLAMVLTFFIMEPIAKQSYEIGIKPYLAKEIPYDVAFVKSVGPFKEFMIRNT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF + + T + I ++IP+FMISE++ +F+IGFLI LPFL+IDM
Sbjct: 146 REKDLALFYRIRGMENPQT----IEDIPLTMVIPAFMISEMKTAFQIGFLIYLPFLVIDM 201
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++++I+MAMGMMMLPP ISLPFK++ FVL+DG++LLV +LV+SF
Sbjct: 202 VISSILMAMGMMMLPPVMISLPFKILVFVLVDGFNLLVGSLVESF 246
>gi|91200236|emb|CAJ73280.1| strongly similar to polar flagellar assembly protein FliP
[Candidatus Kuenenia stuttgartiensis]
Length = 254
Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 86/244 (35%), Positives = 141/244 (57%), Gaps = 8/244 (3%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIP----ADLSISTWIVRTFGIFTILSIAPILLIMVT 60
L + ++ + + + +++ T L++ P LL+ +T
Sbjct: 13 IMALLGFLGTAEAAGETDSPLKLTMSLDSVKNPKEMAEVLKIVFFLTGLTLLPGLLLAMT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV S +R + ++PPN ++I +ALF+TF+VM+P +QP + +IT
Sbjct: 73 SFTRIIIVLSFVRKALSFHTLPPNQILIGIALFLTFFVMTPVWTAINSDALQPYIKEEIT 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A+++ EP FM TR+KD++LF ++A I ILIP+F+ SE
Sbjct: 133 QDEALKKGIEPVRKFMLKQTRKKDIALFSNIAKVEKP----FSASDIPMHILIPAFVTSE 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ SF++GFL+ LPFL+ID++VA ++ +MGM MLPP IS+PFK+I FVL+DGW L++++
Sbjct: 189 LKTSFQMGFLLFLPFLVIDLVVACVLTSMGMFMLPPVMISMPFKLILFVLVDGWQLIIQS 248
Query: 241 LVKS 244
L+ S
Sbjct: 249 LITS 252
>gi|192359973|ref|YP_001982204.1| flagellar biosynthesis protein FliP [Cellvibrio japonicus Ueda107]
gi|190686138|gb|ACE83816.1| Flagellar biosynthetic protein fliP [Cellvibrio japonicus Ueda107]
Length = 279
Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 95/234 (40%), Positives = 142/234 (60%), Gaps = 4/234 (1%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
+ + P T ++ + T LS P +L+M+T F R IIVFSI
Sbjct: 48 LGSLPAIPGLPALTIQTNPDGTQEYTVTLQILALMTALSFLPAILMMMTSFTRIIIVFSI 107
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LR +G+ P N ++I LALF+T ++M P D++ +QP +N QI+ A+ + A P
Sbjct: 108 LRQALGLQQSPSNQILIGLALFLTLFIMKPVFDQANHDALQPYINGQISAQEALAKTAAP 167
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
F FM TRE D+ LF+ +A I + I + IL P+F+ISEL+ +F+IGF+I
Sbjct: 168 FHRFMLAQTRESDILLFVGIAKHP----PIATPEDIPFTILAPAFIISELKTAFQIGFII 223
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIID++V++++MAMGMMML P ISLPFK++ FVL+DGW+++V L S+
Sbjct: 224 FIPFLIIDIVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWAMIVGTLAASY 277
>gi|254973925|ref|ZP_05270397.1| flagellar biosynthesis protein FliP [Clostridium difficile
QCD-66c26]
gi|255091312|ref|ZP_05320790.1| flagellar biosynthesis protein FliP [Clostridium difficile CIP
107932]
gi|255305286|ref|ZP_05349458.1| flagellar biosynthesis protein FliP [Clostridium difficile ATCC
43255]
gi|255312969|ref|ZP_05354552.1| flagellar biosynthesis protein FliP [Clostridium difficile
QCD-76w55]
gi|255515728|ref|ZP_05383404.1| flagellar biosynthesis protein FliP [Clostridium difficile
QCD-97b34]
gi|255648822|ref|ZP_05395724.1| flagellar biosynthesis protein FliP [Clostridium difficile
QCD-37x79]
gi|260682041|ref|YP_003213326.1| flagellar biosynthesis protein FliP [Clostridium difficile CD196]
gi|260685639|ref|YP_003216772.1| flagellar biosynthesis protein FliP [Clostridium difficile R20291]
gi|306518937|ref|ZP_07405284.1| flagellar biosynthesis protein FliP [Clostridium difficile
QCD-32g58]
gi|260208204|emb|CBA60554.1| flagellar biosynthetic protein [Clostridium difficile CD196]
gi|260211655|emb|CBE01917.1| flagellar biosynthetic protein [Clostridium difficile R20291]
Length = 221
Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 80/223 (35%), Positives = 135/223 (60%), Gaps = 3/223 (1%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
+ + +P T ++ F T L P ++ M+T F R +I S L++ +G
Sbjct: 1 MELLSKLPLADVPYTSSMQLFLFLTALMFLPFVMFMMTSFVRIVISLSFLKSALGAQQAI 60
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
P+ +++ LA+ +T ++M P L+ E +QP M ++T A++ P F+ TR+
Sbjct: 61 PSQILVGLAIVLTIFIMRPVLNEINEKALQPYMKEEVTMEEAMKEAEGPIKEFLLKQTRQ 120
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
DL LF++ A + ++I +++P+F ISEL+ +F+IGFLI +PFLIID++V
Sbjct: 121 TDLDLFVEQAGLKEKK---LTRENIPLSVVVPAFAISELKTAFQIGFLIYIPFLIIDLVV 177
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+++M+MGM MLPP ISLPFK++ FV++DGW+L+V+ L+ F
Sbjct: 178 ASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWNLIVKTLILGF 220
>gi|325981181|ref|YP_004293583.1| flagellar biosynthetic protein FliP [Nitrosomonas sp. AL212]
gi|325530700|gb|ADZ25421.1| flagellar biosynthetic protein FliP [Nitrosomonas sp. AL212]
Length = 248
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 94/243 (38%), Positives = 148/243 (60%), Gaps = 7/243 (2%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA---PILLIMVTCF 62
F L FA+ S A+ S + +L+ P L++M++ F
Sbjct: 8 VFFLAGFIALPAFAQQSGFPAFTSTANADGSATYTLSLQTLLLLTSLTFLPALVLMMSSF 67
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R IIV S+LR +G S PPN V++ LALF+TF++MSP +DR P ++I+
Sbjct: 68 TRIIIVLSLLRMALGTQSSPPNQVLLGLALFLTFFIMSPVIDRVYSEAYLPFSEDKISIM 127
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
A ++ + P FM + TRE DL+LF+ ++ S ++ D + +IL+P+++ SEL+
Sbjct: 128 EAAEKASVPLKSFMLHQTRETDLALFVQISESE----ELESRDQVPLKILVPAYITSELK 183
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+F+IGF+I +PFLIID++V++++MAMGMMML P ISLPFK++ FVL+DGW L++ +L
Sbjct: 184 TAFQIGFVIFIPFLIIDLVVSSVLMAMGMMMLSPMIISLPFKLMLFVLVDGWHLIIGSLT 243
Query: 243 KSF 245
+SF
Sbjct: 244 QSF 246
>gi|221639477|ref|YP_002525739.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides KD131]
gi|221160258|gb|ACM01238.1| Flagellar biosynthetic protein fliP [Rhodobacter sphaeroides KD131]
Length = 249
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 89/221 (40%), Positives = 137/221 (61%), Gaps = 4/221 (1%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
+ + + ++ + T L++ P L++ ++ F R IIV SILR +G PPN
Sbjct: 30 ITVTEGTGGTSYSLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPN 89
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
V+I+LALF+TF+VM PTL E + P ++ QI AI+R F+ NTR+ D
Sbjct: 90 QVLIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQND 149
Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
L +F D+A + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+
Sbjct: 150 LLMFSDLAG----AGPYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIAS 205
Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I+MA+GMMML P +SLPFK++ FVL+DGW+L V +L ++
Sbjct: 206 ILMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAATY 246
>gi|88813211|ref|ZP_01128451.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231]
gi|88789533|gb|EAR20660.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231]
Length = 245
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 96/246 (39%), Positives = 147/246 (59%), Gaps = 6/246 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMN--IPADLSISTWIVRTFGIFTILSIAPILLIMV 59
+R + L P + A+ + + + D + ++ + T L++ P L+M+
Sbjct: 1 MRALLMVVLLWVPGVALAQGTGIEAVTVQSAGDGETWSVSLQILAVMTALTLLPAALLMM 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R IIV +ILR +G S P N V+I LALF+T +VMSP L + E+ +QP +N +
Sbjct: 61 TAFTRIIIVLAILRQAIGTTSTPSNQVLIGLALFLTVFVMSPVLTQINEVALQPYLNEGM 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
A++ A P FM TREKD+ LF+++A + + + L+P+FM S
Sbjct: 121 DAEQAVRAAAGPLRAFMLAQTREKDIGLFLNIA----DAGPVASPQEVPFSTLVPAFMTS 176
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL +F+IGF++ LPFL+ID++VA+ +M+MGM+ML P ISLPFK++ FVLIDGWSL++
Sbjct: 177 ELETAFQIGFIVFLPFLVIDLVVASTLMSMGMLMLSPMLISLPFKIMLFVLIDGWSLIMG 236
Query: 240 NLVKSF 245
L SF
Sbjct: 237 TLAGSF 242
>gi|114320138|ref|YP_741821.1| flagellar biosynthesis protein FliP [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226532|gb|ABI56331.1| flagellar biosynthetic protein FliP [Alkalilimnicola ehrlichii
MLHE-1]
Length = 250
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 6/244 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
L P +V A+ + + D + ++ + T+L++ P L+M+T
Sbjct: 9 ILIALAGLTAPVVVLAQPPGLEALRITEGEDGQTWSLSLQVLILMTLLTLLPAGLLMMTS 68
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIV +ILR MG S P N V+I LALF+T +VM+P + + P + ++
Sbjct: 69 FTRIIIVLAILRQAMGTASTPSNQVLIGLALFLTLFVMAPVFQEVHDTALAPYLAEEMAP 128
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A++ +EP FM TRE DL LF+ +A + D + + +L+P+FM SEL
Sbjct: 129 DEALEAASEPMRGFMIAQTRESDLGLFLRIAGY----DQVDSPDDVPFTVLVPAFMTSEL 184
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F IGF+I LPFL+ID++VA+ +M+MGM+ML P ISLPFK++ FVL+DGWSLL+ L
Sbjct: 185 KTAFTIGFIIYLPFLVIDLVVASTLMSMGMLMLSPMIISLPFKILLFVLVDGWSLLMGTL 244
Query: 242 VKSF 245
SF
Sbjct: 245 ASSF 248
>gi|168334561|ref|ZP_02692717.1| flagellar biosynthetic protein FliP [Epulopiscium sp. 'N.t.
morphotype B']
Length = 243
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M + F FL+ P VF+ +L+ + P + ++ T L + P LL++ T
Sbjct: 1 MGKLVLFLCFLLVPTRVFSLDALNSITQSPEFGT----SLQLVFFITFLGLIPTLLLVST 56
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R II L+T MG +PPN V+I LALF+TF+VMSP + I P QI+
Sbjct: 57 SFTRIIITLYFLKTAMGTQQMPPNQVVIGLALFLTFFVMSPVVSTINTEAIVPYSEGQIS 116
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ +++ A P FM TR +D+ LFMD+++ + + Y I++P+F+ISE
Sbjct: 117 QMEFLEQAAAPIKEFMVMQTRXEDIKLFMDLSNQPAIVDETNILAQLPYHIVVPAFIISE 176
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+R F IGFL+ LPF+IIDM+VA+++MAMGMMMLPP ISLPFK++ F+++DGW L++
Sbjct: 177 IRAGFVIGFLMYLPFIIIDMVVASVLMAMGMMMLPPAMISLPFKILIFIIVDGWHLIIGE 236
Query: 241 LVKSF 245
LV++F
Sbjct: 237 LVETF 241
>gi|293408348|ref|ZP_06652187.1| fliP [Escherichia coli B354]
gi|291471526|gb|EFF14009.1| fliP [Escherichia coli B354]
Length = 250
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N+QIT T A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------NAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|157737241|ref|YP_001489924.1| flagellar biosynthesis protein FliP [Arcobacter butzleri RM4018]
gi|157699095|gb|ABV67255.1| flagellar biosynthetic protein FliP [Arcobacter butzleri RM4018]
Length = 241
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 98/244 (40%), Positives = 144/244 (59%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+R F L ++ + + I +L +AP LL+MVT
Sbjct: 1 MRIIFTVLLFSIFANAADAPMINLSVAAIEQPVQFVRTINIAIILALLVLAPTLLLMVTS 60
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIVFS+LR MG+ PP+ +IISL+L +T ++M P ++ + I P M+ +I
Sbjct: 61 FTRLIIVFSLLRQAMGLQQTPPSQIIISLSLILTIFIMEPYAKKAWDDAIVPYMDEKIGY 120
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A + PF FM NTRE DL+LF + + + + +L+P+F++SEL
Sbjct: 121 EVAFDKGVAPFKEFMIKNTREADLALFYRIKKEPNPK----NIEAVPLTLLMPAFIVSEL 176
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
R +FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP ISLP K+IFF+++DGW L++ NL
Sbjct: 177 RTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIVVDGWQLIIGNL 236
Query: 242 VKSF 245
+SF
Sbjct: 237 AQSF 240
>gi|126734123|ref|ZP_01749870.1| flagellar biosynthetic protein FliP [Roseobacter sp. CCS2]
gi|126716989|gb|EBA13853.1| flagellar biosynthetic protein FliP [Roseobacter sp. CCS2]
Length = 243
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 92/244 (37%), Positives = 141/244 (57%), Gaps = 3/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+R ++ L + + D S++T ++ + T+LS+ P + IMVTC
Sbjct: 1 MRRALIIAAVLMVALSGPAIAQEVSITFDDDGSLATRSIQLLILITVLSLVPGIAIMVTC 60
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
FP I VF+ILR +G+ PPN++I+SLALF+T++VM P + GI PL+ QI
Sbjct: 61 FPFIITVFAILRQAIGLQQSPPNMLIVSLALFLTYFVMEPVFREAWSNGIDPLIQGQIAL 120
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
R EP VFM F +A + I++PSF++SE+
Sbjct: 121 EEGFVRTIEPLQVFMLTRIDPD---TFTALADLRPDVSGNGPASDAPLSIVVPSFLLSEM 177
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
R+F++GFLI +PFLIID++VA ++M+MGMMM+PP +SLPFK+ FFV+ DGW+L+ +L
Sbjct: 178 ERAFQVGFLIFMPFLIIDLVVAAVLMSMGMMMVPPAIVSLPFKLAFFVVADGWTLIATSL 237
Query: 242 VKSF 245
V+ +
Sbjct: 238 VQGY 241
>gi|331645397|ref|ZP_08346501.1| flagellar biosynthetic protein FliP [Escherichia coli M605]
gi|331045559|gb|EGI17685.1| flagellar biosynthetic protein FliP [Escherichia coli M605]
Length = 250
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P +++M+TCF R IIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRLIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + I P N+QIT T A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTLLVMRPIWLNIYDHAIVPFENDQITLTDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------NAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|256020209|ref|ZP_05434074.1| flagellar biosynthesis protein FliP [Shigella sp. D9]
gi|260853448|ref|YP_003227339.1| putative lateral flagellar biosynthesis protein [Escherichia coli
O26:H11 str. 11368]
gi|260866394|ref|YP_003232796.1| putative lateral flagellar biosynthesis protein [Escherichia coli
O111:H- str. 11128]
gi|307315216|ref|ZP_07594795.1| flagellar biosynthetic protein FliP [Escherichia coli W]
gi|332281371|ref|ZP_08393784.1| lateral flagellar export/assembly protein [Shigella sp. D9]
gi|257752097|dbj|BAI23599.1| predicted lateral flagellar biosynthesis protein [Escherichia coli
O26:H11 str. 11368]
gi|257762750|dbj|BAI34245.1| predicted lateral flagellar biosynthesis protein [Escherichia coli
O111:H- str. 11128]
gi|306905397|gb|EFN35934.1| flagellar biosynthetic protein FliP [Escherichia coli W]
gi|315059469|gb|ADT73796.1| Lateral flagellar export/assembly protein [Escherichia coli W]
gi|323158013|gb|EFZ44114.1| flagellar biosynthetic protein FliP [Escherichia coli EPECa14]
gi|323178514|gb|EFZ64092.1| flagellar biosynthetic protein FliP [Escherichia coli 1180]
gi|323181527|gb|EFZ66947.1| flagellar biosynthetic protein FliP [Escherichia coli 1357]
gi|323379973|gb|ADX52241.1| flagellar biosynthetic protein FliP [Escherichia coli KO11]
gi|332103723|gb|EGJ07069.1| lateral flagellar export/assembly protein [Shigella sp. D9]
Length = 250
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N+QIT T A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------HAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|258511388|ref|YP_003184822.1| flagellar biosynthetic protein FliP [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478114|gb|ACV58433.1| flagellar biosynthetic protein FliP [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 272
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 97/249 (38%), Positives = 151/249 (60%), Gaps = 7/249 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHD-------VMNIPADLSISTWIVRTFGIFTILSIAPILL 56
+ + P V A++S V + + V+ + T L++AP L
Sbjct: 22 WMAVFIMCFHPSFVHAQTSPSAPAIPGVSVSVGGSGPTSVANTVKIVLLLTALTLAPAAL 81
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
I++TCF R I+V S +R + + + PPN V++ LALF+T +VM PTL ++ +QP +
Sbjct: 82 ILMTCFTRVIVVLSFVRNALSLQTSPPNQVLVGLALFITLFVMQPTLQQANTQALQPYLR 141
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
QI++T AI+R PF VFM TR +DL LF+ H + + I L+P+F
Sbjct: 142 GQISQTAAIERAEAPFKVFMAKQTRAQDLELFLAYRHETLTAEMERHPEAIAMSALVPAF 201
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
+SEL+ +F+IGF+I LPFL+ID++V+T +M+MGMMMLPP ISLPFKV+ FV+++GW L
Sbjct: 202 TLSELQTAFQIGFMIYLPFLVIDLVVSTTLMSMGMMMLPPVMISLPFKVLLFVMVNGWYL 261
Query: 237 LVENLVKSF 245
+V++L+ +
Sbjct: 262 VVKSLLVGY 270
>gi|188496180|ref|ZP_03003450.1| flagellar biosynthetic protein FliP [Escherichia coli 53638]
gi|188491379|gb|EDU66482.1| flagellar biosynthetic protein FliP [Escherichia coli 53638]
Length = 250
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P + +M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMALMMTCFTRFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N+QIT T A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------NAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|323171041|gb|EFZ56690.1| flagellar biosynthetic protein FliP [Escherichia coli LT-68]
Length = 250
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N+QI + A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDQIPLSDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------NAADQDLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK+I FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLILFVLIDGWSLTIGTLTTS 243
>gi|227873535|ref|ZP_03991780.1| flagellar biosynthesis protein FliP [Oribacterium sinus F0268]
gi|227840625|gb|EEJ51010.1| flagellar biosynthesis protein FliP [Oribacterium sinus F0268]
Length = 218
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 79/213 (37%), Positives = 126/213 (59%), Gaps = 4/213 (1%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
S + + T++++ P ++IM+T F R II+ S R MG+ PPN+V+ +A
Sbjct: 9 NGGSVPTLELIYLLTLVALLPSIVIMMTSFTRIIIILSFTRNAMGVQQTPPNMVLAGIAF 68
Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
F+T Y+MSPTL++ +P +T+ A+ + + FM NT + L F+ M+
Sbjct: 69 FLTLYIMSPTLNKINTEAYEPYKKGTVTQEEALNIMGKDMKEFMLRNTEKATLDRFVSMS 128
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ ++ P+FM SEL+R F GFLI LPFL+ID++V+T +MAMGM+
Sbjct: 129 KVELQK----DPKDYPLTVVTPAFMTSELKRGFTAGFLIYLPFLLIDVVVSTTLMAMGMV 184
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MLPP +S+PFK++ F+ +DGW+LL ++V SF
Sbjct: 185 MLPPAMVSMPFKLLLFITVDGWNLLFSSVVNSF 217
>gi|157363490|ref|YP_001470257.1| flagellar biosynthesis protein FliP [Thermotoga lettingae TMO]
gi|157314094|gb|ABV33193.1| flagellar biosynthetic protein FliP [Thermotoga lettingae TMO]
Length = 250
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 82/236 (34%), Positives = 129/236 (54%), Gaps = 9/236 (3%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
P+ S+ ++ + + I T+L++AP +LI+ T F R I+VFS LR
Sbjct: 18 PQEELPFPSIGIEISPVGNERDLVTTLEILLIITVLALAPSILILFTSFTRIIVVFSFLR 77
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+G PP+ V+I LALF+TF++M P + + P M +I R+
Sbjct: 78 NALGTRQTPPSQVLIGLALFLTFFIMQPVWNDIYNDALTPYMEKEIGYEELFSRMIGRVR 137
Query: 134 VFMRN----NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
FM + E ++ L K + ILIP+F++ EL F++G
Sbjct: 138 QFMLKELVDHHNEDNVFLLASSVGKK-----FDKIEDAPNSILIPAFVLGELEIGFKMGV 192
Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
L+ +PF++IDMIV++I++AMGM+M+PP ISLPFKV+ F++++GW LLV L+KSF
Sbjct: 193 LLYIPFIVIDMIVSSILLAMGMIMIPPVLISLPFKVLLFIVVNGWDLLVSGLIKSF 248
>gi|302338093|ref|YP_003803299.1| flagellar biosynthetic protein FliP [Spirochaeta smaragdinae DSM
11293]
gi|301635278|gb|ADK80705.1| flagellar biosynthetic protein FliP [Spirochaeta smaragdinae DSM
11293]
Length = 260
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 80/259 (30%), Positives = 133/259 (51%), Gaps = 19/259 (7%)
Query: 2 IRYCFFALFLVTPELVFAK-------------SSLHDVMNIPADLSISTWIVRTFGIFTI 48
I L V FA+ + + P ++ +
Sbjct: 5 ITVILLFLLFVVGGSSFAQERPTERSDNGITVPFIDLTVREPQSNQEVALSIQLLLFLAV 64
Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
++++P ++I+ TCF R IVF ++ + + VPPN V++ +A+F+T ++M PT ++ +
Sbjct: 65 ITLSPSIIILTTCFLRIAIVFDFIKRSLSLQQVPPNQVMMGVAIFLTIFIMWPTGEQIYQ 124
Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR--EKDLSLFMDMAHSSHRNTDITKNDH 166
+P + +I A P +FM +++ LFM M
Sbjct: 125 NSFRPFADGEIGIQEMYDEAAAPLRLFMYRQMDGDHENIQLFMRMRGLGKPENFSQ---- 180
Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
+ +LIPSF++ EL +F+IG L+ +PF+IIDM+VA+ +M+MGM+MLPP ISLPFK+I
Sbjct: 181 VPTYVLIPSFVLHELTVAFKIGILLFVPFIIIDMVVASTLMSMGMIMLPPVMISLPFKLI 240
Query: 227 FFVLIDGWSLLVENLVKSF 245
FVL+DGW L+ + L+ SF
Sbjct: 241 LFVLVDGWDLITQQLILSF 259
>gi|331666527|ref|ZP_08367401.1| flagellar biosynthetic protein FliP [Escherichia coli TA271]
gi|331065751|gb|EGI37635.1| flagellar biosynthetic protein FliP [Escherichia coli TA271]
Length = 250
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 80/224 (35%), Positives = 131/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N+QI + A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDQIPLSDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------HAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|87119473|ref|ZP_01075370.1| Flagellar transport protein FliP [Marinomonas sp. MED121]
gi|86164949|gb|EAQ66217.1| Flagellar transport protein FliP [Marinomonas sp. MED121]
Length = 249
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 85/224 (37%), Positives = 142/224 (63%), Gaps = 3/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
V + ++ I T L++ P L M+T F R ++V +ILR +G+
Sbjct: 27 PALTVTTNDDGTQDYSVSLQILFIMTALTLLPAALTMMTAFTRIVVVLAILRQAIGLQQT 86
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N +++ +ALF+T ++M+PTLD+ + +QP + +IT AI++ + P FM TR
Sbjct: 87 PSNQIMVGMALFLTLFIMTPTLDKINAVALQPYLEEEITSIQAIEKASVPIRDFMLAQTR 146
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
E D++LF+ +A + I + + + IL+P+F+ SEL+ +F+IGF+I +PFL++DM+
Sbjct: 147 ESDIALFVKLAG---KEGQIESLETLPFTILMPAFVASELKTAFQIGFMIFIPFLVLDMV 203
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P ISLPFK++ FV++DGW++++ L SF
Sbjct: 204 VASVLMAMGMMMLSPIIISLPFKIMLFVMVDGWAMIMGTLAASF 247
>gi|315636956|ref|ZP_07892180.1| flagellar biosynthetic protein FliP [Arcobacter butzleri JV22]
gi|315478786|gb|EFU69495.1| flagellar biosynthetic protein FliP [Arcobacter butzleri JV22]
Length = 241
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 98/244 (40%), Positives = 145/244 (59%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
++ F LF ++ + + I +L +AP LL+MVT
Sbjct: 1 MKIIFTVLFFSIFANAADAPMINLSVAAIEQPVQFVRTINIAIILALLVLAPTLLLMVTS 60
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIVFS+LR MG+ PP+ +IISL+L +T ++M P ++ + I P M+ +I
Sbjct: 61 FTRLIIVFSLLRQAMGLQQTPPSQIIISLSLILTIFIMEPYAKKAWDDAIVPYMDEKIGY 120
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A + PF FM NTRE DL+LF + + + + +L+P+F++SEL
Sbjct: 121 EVAFDKGVAPFKEFMIKNTREADLALFYRIKKEPNPK----NIEAVPLTLLMPAFIVSEL 176
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
R +FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP ISLP K+IFF+++DGW L++ NL
Sbjct: 177 RTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIVVDGWQLIIGNL 236
Query: 242 VKSF 245
+SF
Sbjct: 237 AQSF 240
>gi|307721191|ref|YP_003892331.1| flagellar biosynthetic protein FliP [Sulfurimonas autotrophica DSM
16294]
gi|306979284|gb|ADN09319.1| flagellar biosynthetic protein FliP [Sulfurimonas autotrophica DSM
16294]
Length = 245
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 93/224 (41%), Positives = 143/224 (63%), Gaps = 4/224 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+++ ++ P + + T+L +AP +++++T F RF+IVF LR +G
Sbjct: 24 PTMNLSLSAPDTPQQLVSSLNVLVVLTLLFLAPAMVLVMTTFTRFVIVFGFLRQALGTQQ 83
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
VPP +++ LA+ +TF+VM P ++ GI+P + +I A + PF FM NT
Sbjct: 84 VPPTQLLVMLAMILTFFVMEPIGTKAYNQGIKPYVAKEIGYEEAFTKTTLPFKNFMIRNT 143
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF+ + + + I+IP+F+ISE++ +FEIGFL+ LPFL+IDM
Sbjct: 144 REKDLALFLRIRKMQNPK----SVADVPLSIVIPAFIISEMKTAFEIGFLLFLPFLVIDM 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
+VA+I+M+MGMMMLPP ISLPFK++ FVLIDGW+LL+ NL+ S
Sbjct: 200 VVASILMSMGMMMLPPVMISLPFKILVFVLIDGWNLLIGNLIFS 243
>gi|306841043|ref|ZP_07473767.1| flagellar biosynthetic protein FliP [Brucella sp. BO2]
gi|306288932|gb|EFM60232.1| flagellar biosynthetic protein FliP [Brucella sp. BO2]
Length = 204
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 121/206 (58%), Positives = 163/206 (79%), Gaps = 3/206 (1%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
++ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM
Sbjct: 1 MQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVM 60
Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+P DR+ G+QPLM N+IT+ A +++PF FM R+KDL LF D+A S R +
Sbjct: 61 APAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLADPSFRTS 120
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
D +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT I
Sbjct: 121 DDGI---VDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVI 177
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
SLPFK++FFVLIDGW++LV +L++SF
Sbjct: 178 SLPFKILFFVLIDGWNILVGSLIRSF 203
>gi|126730033|ref|ZP_01745845.1| flagellar biosynthetic protein FliP [Sagittula stellata E-37]
gi|126709413|gb|EBA08467.1| flagellar biosynthetic protein FliP [Sagittula stellata E-37]
Length = 245
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 95/230 (41%), Positives = 139/230 (60%), Gaps = 7/230 (3%)
Query: 16 LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
A+ D+ S++ V+ + T+LS+AP + IMVTCFP + V +ILR
Sbjct: 22 PAAAQDISIDL----GGGSVTATSVQLILLITLLSLAPGIAIMVTCFPFMVTVLAILRQA 77
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
+G+ PPN++I+SLALF+T++VM P + + G+QPL+ QI A R PF F
Sbjct: 78 VGLQQSPPNMLIVSLALFLTYFVMEPVFTEAWDTGVQPLIEEQIEVEEAAIRTLAPFRDF 137
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
M T + MA + +L+PSFM+SE+ R+F++GFLI LPF
Sbjct: 138 MAGRTDPD---TYRAMADLRPDARETVLAPEAPLSVLVPSFMLSEVARAFQVGFLIFLPF 194
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LIID++VA ++M+MGMMM+PP +SLPFK+ FFV+ DGWSLL +LV+ +
Sbjct: 195 LIIDLVVAAVLMSMGMMMVPPAIVSLPFKLAFFVVADGWSLLAGSLVRGY 244
>gi|325567519|ref|ZP_08144186.1| flagellar biosynthetic protein FliP [Enterococcus casseliflavus
ATCC 12755]
gi|325158952|gb|EGC71098.1| flagellar biosynthetic protein FliP [Enterococcus casseliflavus
ATCC 12755]
Length = 254
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 100/244 (40%), Positives = 155/244 (63%), Gaps = 6/244 (2%)
Query: 5 CFFALFLVTPELVFA---KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
L+ P+ FA + + N+ ++ + S+ + TF + T+LS+ P+LLIM+T
Sbjct: 13 AVLFSSLMLPQTAFALDTEDVSSTINNLLSNGNGSSDTINTFLLLTLLSLLPVLLIMMTS 72
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+V S +R+ +G PPN V+I LALF+TF++M P + I+P +I++
Sbjct: 73 FTRIIMVLSFVRSSLGTQQNPPNQVLIGLALFLTFFIMKPVYTDVYQQAIEPFDRQEISQ 132
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A R + FM TREKD++LF + + + +D + +++P+F+ISEL
Sbjct: 133 AEAFDRSEKRIKAFMMVQTREKDIALFAEADGETEKYH---SSDDVPLTVMVPAFIISEL 189
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
R +F IGFLI +PFLIID++V++I+M+MGMMML P ISLPFK++ FVL+DGW L+VE+L
Sbjct: 190 RTAFSIGFLIFIPFLIIDLVVSSILMSMGMMMLSPIMISLPFKILLFVLVDGWYLIVESL 249
Query: 242 VKSF 245
+KSF
Sbjct: 250 IKSF 253
>gi|301646791|ref|ZP_07246645.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1]
gi|307136838|ref|ZP_07496194.1| flagellar biosynthesis protein FliP [Escherichia coli H736]
gi|331640694|ref|ZP_08341841.1| flagellar biosynthetic protein FliP [Escherichia coli H736]
gi|301075026|gb|EFK89832.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1]
gi|315616847|gb|EFU97464.1| flagellar biosynthetic protein FliP [Escherichia coli 3431]
gi|331040068|gb|EGI12276.1| flagellar biosynthetic protein FliP [Escherichia coli H736]
Length = 250
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P + +M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMALMMTCFARFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N+QIT T A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------NAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|302387779|ref|YP_003823601.1| flagellar biosynthetic protein FliP [Clostridium saccharolyticum
WM1]
gi|302198407|gb|ADL05978.1| flagellar biosynthetic protein FliP [Clostridium saccharolyticum
WM1]
Length = 220
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 84/213 (39%), Positives = 133/213 (62%), Gaps = 4/213 (1%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
+ F I TI+S+ P +L+M+T F R +I+ S R MG+ PPN+V++ +AL
Sbjct: 10 NGGRVPTLELFLILTIISLLPSILVMMTSFTRIVIILSFTRNAMGIQQTPPNMVLVGIAL 69
Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
F+T ++M P + QP + +I++ A++R P FM T + L+LF DM+
Sbjct: 70 FLTLFIMDPVIKDVNTNAYQPYIKEEISQGEALKRAQVPMKRFMLKQTEKTTLTLFTDMS 129
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
++ + + ++IPSFM SEL+R+F GF+I LPF+++D++V++ +M+MGM+
Sbjct: 130 NTDMP----ENIEDLPMTVVIPSFMTSELKRAFTAGFMIFLPFMLVDIVVSSTLMSMGMV 185
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MLPP ISLPFK++ FV ++GW LL NLVKSF
Sbjct: 186 MLPPAMISLPFKLLLFVTVNGWELLFTNLVKSF 218
>gi|170021379|ref|YP_001726333.1| flagellar biosynthesis protein FliP [Escherichia coli ATCC 8739]
gi|169756307|gb|ACA79006.1| flagellar biosynthetic protein FliP [Escherichia coli ATCC 8739]
Length = 250
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 81/224 (36%), Positives = 132/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N++IT T A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDRITLTDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------NAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|149200773|ref|ZP_01877748.1| Flagellar transport protein FliP [Roseovarius sp. TM1035]
gi|149145106|gb|EDM33132.1| Flagellar transport protein FliP [Roseovarius sp. TM1035]
Length = 246
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 84/226 (37%), Positives = 140/226 (61%), Gaps = 4/226 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
+ L + + + + ++ + T L++ P L++ +T F R IIV SILR MG
Sbjct: 21 QQGLPAITLSDENGTTYSLSLQILALMTALTVLPSLVLGMTAFTRIIIVLSILRQAMGTM 80
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
PPN V+I++ALF++F+VM P L + + P ++ Q+ A++ + FM N
Sbjct: 81 QTPPNQVLIAIALFLSFFVMQPVLTEVYDTALSPYLDGQMAPDVAVRLAWDKLSGFMLAN 140
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TR+ DL +F ++A + + + +L+P+++ SEL+ +F+IGFL+ LPFL+ID
Sbjct: 141 TRQNDLLMFAELAG----DAPYASDAEVPVAVLLPAYITSELKTAFQIGFLLFLPFLVID 196
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M++A+I+MA+GMMML P +SLPFK++ FVL+DGW+L + +L SF
Sbjct: 197 MVIASILMALGMMMLSPMIVSLPFKLLLFVLVDGWALTMGSLASSF 242
>gi|94968670|ref|YP_590718.1| flagellar biosynthesis protein FliP [Candidatus Koribacter
versatilis Ellin345]
gi|94550720|gb|ABF40644.1| flagellar biosynthetic protein FliP [Candidatus Koribacter
versatilis Ellin345]
Length = 244
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 78/243 (32%), Positives = 137/243 (56%), Gaps = 8/243 (3%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
+ L ++ I + + T + T +++ P +L+ +T F
Sbjct: 9 SWIACFGMLSISRPALGADHGVNLPAIGNNATPWT----IVVLLTAVTLLPAVLLCMTPF 64
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R ++VF LR +G + P N ++ L L +T ++M P + + + P+ +I+ T
Sbjct: 65 VRLLVVFHFLRQALGTQTAPTNQTLVGLTLILTLFLMQPVITHIQQDALTPMQQGKISVT 124
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
AI R AEP FM +REKDL+LF+++A T + + +R++ P++++SEL+
Sbjct: 125 EAISRGAEPVRQFMLRFSREKDLALFVELAKLPPPKT----SQDLPFRVVAPAYILSELK 180
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
F+IG ++ LPFL+ID+++A I ++GMM LPP IS P K++ FV++DGW+LL+ +L+
Sbjct: 181 AGFQIGAVLFLPFLVIDLVIAAITTSVGMMQLPPVVISTPVKILLFVMVDGWNLLIASLM 240
Query: 243 KSF 245
KSF
Sbjct: 241 KSF 243
>gi|289208347|ref|YP_003460413.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. K90mix]
gi|288943978|gb|ADC71677.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. K90mix]
Length = 256
Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats.
Identities = 87/222 (39%), Positives = 135/222 (60%), Gaps = 4/222 (1%)
Query: 24 HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
V + ++ + T+L++ P LIM+T F R ++V +ILR G+G P
Sbjct: 37 LTVTTDGEGGETYSVTLQILLLMTLLTLLPAALIMMTAFTRILVVLAILRQGLGTTQTPS 96
Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
N ++I LA F+T +VM+P D E + P MN ++ +Q +P FM +TRE
Sbjct: 97 NQILIGLAFFLTLFVMAPVFDEIYETAVVPYMNEEMGTEEVLQAGVQPLREFMLAHTRES 156
Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
D+ +F ++ D I R+L+P+F+ SEL+ +F+IGFLI++PFLIID++VA
Sbjct: 157 DIRMFAEINGIDG----FDDADDIPLRLLVPAFVTSELKTAFQIGFLILIPFLIIDLVVA 212
Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+++M+MGM+ML P ISLPFKV+ FVL+DGW+L++ L SF
Sbjct: 213 SVLMSMGMVMLSPLIISLPFKVMLFVLVDGWALMMNTLATSF 254
>gi|328948400|ref|YP_004365737.1| flagellar biosynthetic protein FliP [Treponema succinifaciens DSM
2489]
gi|328448724|gb|AEB14440.1| flagellar biosynthetic protein FliP [Treponema succinifaciens DSM
2489]
Length = 281
Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats.
Identities = 84/228 (36%), Positives = 132/228 (57%), Gaps = 6/228 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+L P + + V+ + T+L++AP + I++TCF RF IV ++ + +
Sbjct: 57 PNLSFSATAPRSGNEVAFSVQLLLLLTLLTLAPSIFILMTCFLRFSIVLDFIKRALSLQQ 116
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
VPP V+ +A+FMT + M PT + QPL NN+IT T AI++ P +FM
Sbjct: 117 VPPTAVLNGIAIFMTLFCMWPTFRQIYTDSFQPLSNNEITLTEAIEKAESPIRIFMFRQM 176
Query: 141 --REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
+ + FM MA + +LIP++++ EL +F+IG L+ +PF++I
Sbjct: 177 GNDKNSIRTFMTMAGLGRP----ANASDVPTYVLIPAYILHELTVAFKIGILLYIPFIVI 232
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
DM+VA+I+M+MGMMMLPP IS+PFK++ FVL+DGW LL + L S +
Sbjct: 233 DMVVASILMSMGMMMLPPVQISMPFKLMLFVLVDGWHLLTQQLFVSVL 280
>gi|260432140|ref|ZP_05786111.1| flagellar biosynthetic protein FliP [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415968|gb|EEX09227.1| flagellar biosynthetic protein FliP [Silicibacter lacuscaerulensis
ITI-1157]
Length = 243
Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats.
Identities = 99/245 (40%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M+R F+ + S+ +++ SIS ++ + T+LS+AP L IM+T
Sbjct: 1 MMRNGFWLILAALLLTPALASAQELSLSLGEGGSISARTIQLILLITVLSLAPGLAIMIT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CFP + V +ILR G+G+ PPN++I+SLALF+T++VM P ++ E GI+P++ +
Sbjct: 61 CFPFLVTVLAILRQGIGLQQSPPNMLIVSLALFLTYFVMEPVFTQAWETGIRPMVEETME 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A++R PF FM D F MA + + +L+PSFM+SE
Sbjct: 121 VEPALERALVPFREFMAARL---DAETFQAMAALRPDGEAMELSPQAPLSVLMPSFMLSE 177
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ R+F+IGFLI LPFLIID++VA ++M+MGMMM+PP ++SLPFK+ FFV+ DGWSL+
Sbjct: 178 IARAFQIGFLIFLPFLIIDLVVAAVLMSMGMMMVPPATVSLPFKLAFFVIADGWSLIAGA 237
Query: 241 LVKSF 245
LV+S+
Sbjct: 238 LVRSY 242
>gi|296282256|ref|ZP_06860254.1| flagellar biosynthesis protein FliP [Citromicrobium bathyomarinum
JL354]
Length = 258
Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats.
Identities = 89/243 (36%), Positives = 144/243 (59%), Gaps = 6/243 (2%)
Query: 6 FFALFLVTPELVFAKSSLHDVMN--IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
P A +L A + ++ + +L+ P +L+M+T F
Sbjct: 20 IAHAATAVPTDSAAAGALDRAFGELGGAGGEPLSLSLQLLLVMGLLTFLPAILLMMTSFT 79
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R I+V +ILR +G+ PPN V+I ++LF++ ++M+PTLDR I+P QI
Sbjct: 80 RIIVVLAILRQALGLQQSPPNQVLIGISLFLSLFIMAPTLDRVNTAAIEPYSAGQINAEV 139
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
AI+R F FM TRE DL +F D+A++ + + IL+P+F+ SEL+
Sbjct: 140 AIERAGGEFHKFMIRQTRENDLQMFADIANAPK----FASPQDVPFSILLPAFVTSELKT 195
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF++ LPFL+ID++V++++M++GMMM+ P +SLPFK++ FVL+DGWSLL+ +L
Sbjct: 196 AFQIGFMLFLPFLVIDLVVSSVLMSLGMMMMSPMLVSLPFKLLLFVLVDGWSLLMGSLAS 255
Query: 244 SFI 246
SF+
Sbjct: 256 SFV 258
>gi|99082784|ref|YP_614938.1| flagellar biosynthesis protein FliP [Ruegeria sp. TM1040]
gi|99039064|gb|ABF65676.1| Flagellar biosynthetic protein fliP [Ruegeria sp. TM1040]
Length = 248
Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats.
Identities = 100/242 (41%), Positives = 148/242 (61%), Gaps = 6/242 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
L P++ A+ +N+ SIS ++ + T+LS+AP LL+M+TCFP
Sbjct: 10 VLAVFALLAQPQVALAQE---LSLNLADGQSISARTIQLILLITVLSVAPGLLVMLTCFP 66
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
I V SILR +G+ PPN+++ISLA+F+T++VM P + E GI PL++ ++
Sbjct: 67 FLITVLSILRQAIGLQQAPPNMLMISLAMFLTYFVMEPVFTEAWETGIAPLIDEELEVVP 126
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A++R EPF VFM N + +A + +LIPSFM+SE+ R
Sbjct: 127 ALERAVEPFRVFMANRLDPD---TYYAIADLRPGTEGSDPSPESPLSVLIPSFMLSEITR 183
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+FEIGFL+ LPFL+ID++ A I+M+MGMMM+PP +SLPFK+ FFV+ DGWSL+ LV+
Sbjct: 184 AFEIGFLVFLPFLVIDLVTAAILMSMGMMMVPPALVSLPFKLAFFVVADGWSLIASALVR 243
Query: 244 SF 245
S+
Sbjct: 244 SY 245
>gi|226944502|ref|YP_002799575.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
gi|226719429|gb|ACO78600.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
Length = 252
Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats.
Identities = 89/217 (41%), Positives = 143/217 (65%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ + ++T + + ++ P LL+M+T F R IIV +LRT +G + PPN V++
Sbjct: 38 LAGGGQQWSLSLQTLLLLSSMAFLPALLLMMTAFTRIIIVLGLLRTAIGTPAAPPNQVLL 97
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
LALF+T ++MSP LDR+ + P ++I ++ ++PF FM TRE DL+LF
Sbjct: 98 GLALFLTLFIMSPVLDRTYQSAWLPFSRDEIGFEQFLETGSQPFREFMLAQTRESDLALF 157
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+A ++ + + R+L+P+F+ SEL+ +F+IGF I +PFLIID++VA+++MA
Sbjct: 158 ARLARLG----ELEGPEQVPLRVLMPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMA 213
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 214 LGMMMVPPATISLPFKLMLFVLVDGWQLLIGSLAQSF 250
>gi|116514991|ref|YP_802620.1| flagellar biosynthesis protein FliP [Buchnera aphidicola str. Cc
(Cinara cedri)]
gi|116256845|gb|ABJ90527.1| type III protein export, membrane component [Buchnera aphidicola
str. Cc (Cinara cedri)]
Length = 244
Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats.
Identities = 98/217 (45%), Positives = 154/217 (70%), Gaps = 4/217 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
IP + ++ + V++ I TI+S P ++M+TCF R IIV S+LRT +G+ PPN ++I
Sbjct: 30 IPDEFNLLNFSVKSSAILTIISFLPACILMMTCFTRIIIVLSLLRTALGVPYSPPNQILI 89
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
L+LF+TF++MSPTL++ + PL ++I A++++ +P +FM TR+ D+S+F
Sbjct: 90 GLSLFLTFFIMSPTLNKIYNTALIPLYKHEINTEVALKKIIKPIHIFMLKQTRKSDISVF 149
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+A S K D+I + IL+PSF+ISEL+ +F+IGF ++LPFLIID+++A+I+M+
Sbjct: 150 WKLAKISFP----MKKDNIPFYILLPSFIISELKTAFQIGFTVLLPFLIIDLVIASILMS 205
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+G+MM+ P++ISLP K+I FVL DGW LLV +L KSF
Sbjct: 206 LGIMMISPSTISLPLKLILFVLSDGWKLLVVSLAKSF 242
>gi|83594162|ref|YP_427914.1| flagellar biosynthesis protein FliP [Rhodospirillum rubrum ATCC
11170]
gi|83577076|gb|ABC23627.1| Flagellar transport protein FliP [Rhodospirillum rubrum ATCC 11170]
Length = 264
Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats.
Identities = 107/231 (46%), Positives = 156/231 (67%), Gaps = 7/231 (3%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
A+S D+ S + I++ G+ T+LS+AP LLIMVT F R ++V SILR
Sbjct: 38 GEAMAQSVNVDL--GTGGGSTTARIIQLVGLLTVLSVAPGLLIMVTSFTRIVVVLSILRQ 95
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+ S PPN+V++SLALFMTF++M+PT ++ + G+ PL+ QI+E A R PF
Sbjct: 96 ALATQSTPPNMVMVSLALFMTFFIMAPTFQQAWDQGLSPLIQEQISEEEAFTRTVAPFRT 155
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM + R+KDL LFM + + + + LIP+FMISELRR+FEIGFLI LP
Sbjct: 156 FMLAHVRDKDLELFMSFNKET-----AAQPSDVSTQALIPAFMISELRRAFEIGFLIFLP 210
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
F++IDM++A+++M+MGMMMLPP +++PFK+IFFVL+DGW L++ +L+ S+
Sbjct: 211 FVVIDMVIASVLMSMGMMMLPPMMLAMPFKLIFFVLVDGWYLVIGSLLSSY 261
>gi|126738561|ref|ZP_01754266.1| flagellar biosynthetic protein FliP [Roseobacter sp. SK209-2-6]
gi|126720360|gb|EBA17066.1| flagellar biosynthetic protein FliP [Roseobacter sp. SK209-2-6]
Length = 247
Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats.
Identities = 99/245 (40%), Positives = 150/245 (61%), Gaps = 6/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + L+ P+ A+ +++ SIS ++ + T+LS+AP +LIM+T
Sbjct: 7 IVAALAMSAALMLPQAALAQE---LSLSLADGQSISARSIQLILLITVLSLAPGMLIMIT 63
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CFP + V SILR G+G+ PPN+++ISLALF+T++VM P + + GI PL+ QI
Sbjct: 64 CFPFLVTVLSILRQGLGLQQAPPNMLMISLALFLTYFVMEPVFTEAWQTGISPLIEEQID 123
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
T + R EPF FM N F +A I +L+PSF++SE
Sbjct: 124 VETGLIRSLEPFRGFMANRLDPD---TFYAIADLRPATKGIDPTVDAPISVLVPSFLLSE 180
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ R+F+IGFL+ LPFL+ID++VA ++M+MGMMM+PP +SLPFK+ FFV+ DGWSL+
Sbjct: 181 IARAFQIGFLVFLPFLVIDLVVAAVLMSMGMMMVPPAVVSLPFKLAFFVVADGWSLIATA 240
Query: 241 LVKSF 245
LV+S+
Sbjct: 241 LVRSY 245
>gi|119899016|ref|YP_934229.1| flagellar biosynthesis protein FliP [Azoarcus sp. BH72]
gi|119671429|emb|CAL95342.1| flagellar biosynthetic protein FliP [Azoarcus sp. BH72]
Length = 258
Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats.
Identities = 92/224 (41%), Positives = 146/224 (65%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ P + + V+T + T+LS P L++M+T F R IIVFS+LR +G +
Sbjct: 37 PALNSTPGPGGSTNYSLPVQTLALLTLLSFIPALVLMMTSFTRIIIVFSLLRQAIGTQTS 96
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN V++ LALF+TF++M+P D+ QP+ +I+ A++R P FM R
Sbjct: 97 PPNQVLLGLALFLTFFIMAPVADKVYLEAYQPMSEGRISFEQALERATVPVKAFMLKQVR 156
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
E DLSLF +A + K + + R+++P+F+ SEL+ +F+IGF++ +PF+IIDM+
Sbjct: 157 EPDLSLFTGLAKHP----PVEKAEDLPMRVVVPAFVTSELKTAFQIGFIVFIPFIIIDMV 212
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++M+MGMMM+ P +SLPFK++ FVL+DGW+LL+ +LV+SF
Sbjct: 213 VASVLMSMGMMMMSPVIVSLPFKIMLFVLVDGWTLLIGSLVQSF 256
>gi|89094445|ref|ZP_01167385.1| flagellar biosynthetic protein FliP [Oceanospirillum sp. MED92]
gi|89081337|gb|EAR60569.1| flagellar biosynthetic protein FliP [Oceanospirillum sp. MED92]
Length = 250
Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats.
Identities = 86/224 (38%), Positives = 141/224 (62%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + + ++ + T+L+ P +L+M+T F R IIVF+ILR +G+
Sbjct: 29 PAVTLNTAEDGSTNYSVTLQVLILMTMLTFLPAMLMMMTSFARIIIVFAILRQALGLQQT 88
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
P N +++ +A+F+T ++M+P LD+ QP MN ++ A+Q + PF FM R
Sbjct: 89 PSNQIMVGMAMFLTLFIMTPVLDQIYIQAAQPYMNEEMNVLEALQAASIPFREFMMLQVR 148
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
E DL LFM ++ + + + I + +L+P+F+ SEL+ +F+IGF++ +PFLIID++
Sbjct: 149 ESDLELFMRISGTP----AVETPEQIPFTVLVPAFVTSELKTAFQIGFMLFIPFLIIDLV 204
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 205 VASVLMAMGMMMLSPVIISLPFKIMLFVLVDGWALVIGTLAASF 248
>gi|331671782|ref|ZP_08372578.1| flagellar biosynthetic protein FliP [Escherichia coli TA280]
gi|331070771|gb|EGI42130.1| flagellar biosynthetic protein FliP [Escherichia coli TA280]
Length = 250
Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats.
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 6/224 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+ + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+
Sbjct: 26 DIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQ 85
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN ++I +AL +T VM P + + P N+QIT T A+ A P FM T
Sbjct: 86 TPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQT 145
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+K ++ M + + + I++P++++SEL+ +F+IGF+I +PFL+ID+
Sbjct: 146 DKKAMAQIMTIGGAKG------NAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL + L S
Sbjct: 200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
>gi|126697832|ref|YP_001086729.1| flagellar biosynthesis protein FliP [Clostridium difficile 630]
gi|255099428|ref|ZP_05328405.1| flagellar biosynthesis protein FliP [Clostridium difficile
QCD-63q42]
gi|115249269|emb|CAJ67082.1| Flagellar biosynthesis protein FliP [Clostridium difficile]
Length = 221
Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats.
Identities = 80/223 (35%), Positives = 135/223 (60%), Gaps = 3/223 (1%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
+ + +P T ++ F T L P ++ M+T F R +I S L++ +G
Sbjct: 1 MELLSKLPLADVPYTSSMQLFLFLTALMFLPFVMFMMTSFVRIVISLSFLKSALGAQQAI 60
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
P+ +++ LA+ +T ++M P L+ E +QP M ++T A++ P F+ TR+
Sbjct: 61 PSQILVGLAIVLTIFIMRPVLNEINEKALQPYMKEEVTMEEAMKEAEGPIKEFLLTQTRQ 120
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
DL LF++ A + ++I +++P+F ISEL+ +F+IGFLI +PFLIID++V
Sbjct: 121 TDLDLFVEQAGLKEKK---LTRENIPLSVVVPAFAISELKTAFQIGFLIYIPFLIIDLVV 177
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+++M+MGM MLPP ISLPFK++ FV++DGW+L+V+ L+ F
Sbjct: 178 ASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWNLIVKTLILGF 220
>gi|150020821|ref|YP_001306175.1| flagellar biosynthesis protein FliP [Thermosipho melanesiensis
BI429]
gi|149793342|gb|ABR30790.1| flagellar biosynthetic protein FliP [Thermosipho melanesiensis
BI429]
Length = 251
Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats.
Identities = 79/249 (31%), Positives = 134/249 (53%), Gaps = 9/249 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I FL P+ + + + + T+LS+AP +LI+ T
Sbjct: 5 LIISLLLVSFLSFPQEEIPLPGISLQITPNQQPRDLVNTLEILLLLTVLSLAPSILILFT 64
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R I+VFS +R +G PPN ++I LALF+TF++M P + I P +N++I
Sbjct: 65 SFTRIIVVFSFVRNALGTRQTPPNQILIGLALFLTFFIMQPVWNDIYNNAITPYLNSEIG 124
Query: 121 ETTAIQRVAEPFWVFMRN----NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
R + FM + E ++ + + I + ILIP+F
Sbjct: 125 YEEMFSRSMDRLRTFMLTEIKIHHNEDNIYILAENVKK-----QIDNIEDTPNSILIPAF 179
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
+I EL F++G L+ +PF+++DM+VA+I++++GM+M+PP +SLPFK++ FVL++GW +
Sbjct: 180 VIGELEIGFKMGILLYIPFIVMDMVVASILLSLGMIMIPPVLVSLPFKILLFVLVNGWDI 239
Query: 237 LVENLVKSF 245
L+ +L+KSF
Sbjct: 240 LIGSLIKSF 248
>gi|291286235|ref|YP_003503051.1| flagellar biosynthetic protein FliP [Denitrovibrio acetiphilus DSM
12809]
gi|290883395|gb|ADD67095.1| flagellar biosynthetic protein FliP [Denitrovibrio acetiphilus DSM
12809]
Length = 243
Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats.
Identities = 95/246 (38%), Positives = 143/246 (58%), Gaps = 9/246 (3%)
Query: 5 CFFALFLVTPELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
L + V A + M ++ + T +SIAP L+++
Sbjct: 1 MVLFLLAIPFTAVLAADPIPFPAFRFGMEQANSPQDVAVTIQIMLLMTFISIAPGFLVLM 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R +IVFS+LRT MG +PPN V++SLAL +TFY+M+P G+ P I
Sbjct: 61 TSFTRIVIVFSLLRTAMGTSQMPPNQVLLSLALILTFYIMNPVFTEMYNKGLGPYFEETI 120
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
T + V +P FM NTR++D+ F+ ++ + T D I +L+ SF++S
Sbjct: 121 TFQEMVSEVKKPLRKFMLYNTRKQDVRTFLSISGEARPKT----ADDIPDLVLLSSFVVS 176
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL +F++GFL+ LPFLIID +VA+++++MGMMMLPP IS+PFK++ FVL+DGW L+V
Sbjct: 177 ELTTAFQMGFLLFLPFLIIDFVVASVLLSMGMMMLPPVMISVPFKIMLFVLVDGWGLIVT 236
Query: 240 NLVKSF 245
++VKSF
Sbjct: 237 SIVKSF 242
>gi|254466138|ref|ZP_05079549.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium Y4I]
gi|206687046|gb|EDZ47528.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium Y4I]
Length = 247
Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats.
Identities = 97/233 (41%), Positives = 143/233 (61%), Gaps = 6/233 (2%)
Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
P+ A+ +++ S+S ++ + T+LS+AP LLIM+TCFP + V SIL
Sbjct: 19 MPQTALAQE---LSLSLADGESVSARSIQLILLITVLSLAPGLLIMITCFPFLVTVLSIL 75
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R G+G+ PPN+++ISLALF+T++VM P + GI PL+ Q+ AI R EPF
Sbjct: 76 RQGIGLQQAPPNMLMISLALFLTYFVMEPVFTEAWNSGISPLLEEQLEPGEAISRSLEPF 135
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
FM N F +A + L+PSF++SE+ R+F+IGFL+
Sbjct: 136 RAFMANRLDPD---TFYAIADLRPETQGMDPVPQAPLSALVPSFLLSEIARAFQIGFLVF 192
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LPFL+ID++VA ++M+MGMMM+PP +SLPFK+ FFV+ DGWSL+ LV+S+
Sbjct: 193 LPFLVIDLVVAAVLMSMGMMMVPPAIVSLPFKLAFFVVADGWSLIATALVRSY 245
>gi|259417183|ref|ZP_05741102.1| flagellar biosynthetic protein FliP [Silicibacter sp. TrichCH4B]
gi|259346089|gb|EEW57903.1| flagellar biosynthetic protein FliP [Silicibacter sp. TrichCH4B]
Length = 248
Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats.
Identities = 99/241 (41%), Positives = 150/241 (62%), Gaps = 6/241 (2%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
+ LV P++ A+ +N+ SIS ++ + T+LS+AP LL+M+TCFP
Sbjct: 11 LAIFVLLVQPQVALAQE---LSLNLADGQSISARTIQLILLITVLSVAPGLLVMLTCFPF 67
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
I V SILR +G+ PPN+++ISLA+F+T++VM P + + GI PL++ ++ A
Sbjct: 68 LITVLSILRQAIGLQQAPPNMLMISLAMFLTYFVMEPVFTEAWDTGIAPLIDEELEVVPA 127
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
++R EPF VFM N + +A + +LIPSFM+SE+ R+
Sbjct: 128 LERAVEPFRVFMANRLDPD---TYYAIADLRPGTQGSDPSPESPLSVLIPSFMLSEITRA 184
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
FEIGFL+ LPFL+ID++ A ++M+MGMMM+PP +SLPFK+ FFV+ DGWSL+ LV+S
Sbjct: 185 FEIGFLVFLPFLVIDLVTAAVLMSMGMMMVPPALVSLPFKLAFFVVADGWSLIASALVRS 244
Query: 245 F 245
+
Sbjct: 245 Y 245
>gi|51894127|ref|YP_076818.1| flagellar biosynthesis protein FliP [Symbiobacterium thermophilum
IAM 14863]
gi|51857816|dbj|BAD41974.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM
14863]
Length = 253
Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 91/226 (40%), Positives = 141/226 (62%), Gaps = 4/226 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
+ D + ++ + T+L++AP ++I+ T F R I+VF +RT +G+
Sbjct: 30 EIPTFDFIRPAETPQEGLQTMQLLLLLTVLTLAPAIIILCTSFTRIIVVFGFIRTALGLQ 89
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
PPN V+I LALF+T VM PT + +QP + +I + AI+R A P FM
Sbjct: 90 QTPPNQVLIGLALFLTAAVMMPTFSEINQTAVQPYLAGEIDQVEAIERGALPLKAFMLRQ 149
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TRE DL L ++++ + + + ++P+F +SEL+ +F +GFLI LPF+IID
Sbjct: 150 TREADLGLMLEVSGQPAPEG----PEDVSFLTVVPAFALSELKTAFTMGFLIYLPFIIID 205
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+I A+++M++GMMM+PPT ISLPFKV+ FVL+DGW L+VE+LV+SF
Sbjct: 206 LITASLMMSLGMMMVPPTLISLPFKVLLFVLVDGWHLVVESLVRSF 251
>gi|326386956|ref|ZP_08208569.1| flagellar biosynthesis protein FliP [Novosphingobium
nitrogenifigens DSM 19370]
gi|326208565|gb|EGD59369.1| flagellar biosynthesis protein FliP [Novosphingobium
nitrogenifigens DSM 19370]
Length = 300
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 89/233 (38%), Positives = 140/233 (60%), Gaps = 4/233 (1%)
Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
+ A ++ + ++ + +L+I P L++M+T F R +IV ++LR
Sbjct: 72 SAIPGALDRAFGELSGAQSKGSLSLSLQLLLLMGLLTILPSLVLMMTSFTRILIVLALLR 131
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+G+ PPN V+I L+LF++ +VM PTLDR IQP I A F
Sbjct: 132 QALGLQQSPPNPVLIGLSLFLSLFVMGPTLDRVNANAIQPYSAGTINAEQAFVNGGREFH 191
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM TRE DL +F DMAH+ + + IL+P+F+ SEL+ +F+IGF++ L
Sbjct: 192 AFMIRQTREHDLLMFADMAHAPR----FASPADVPWTILLPAFVTSELKTAFQIGFMLFL 247
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
PFL+ID++V++++M++GMMM+ PT ISLPFK++ FVL+DGW+LL+ +L SF+
Sbjct: 248 PFLVIDLVVSSVLMSLGMMMMSPTVISLPFKLLLFVLVDGWALLMGSLASSFV 300
>gi|313905144|ref|ZP_07838513.1| flagellar biosynthetic protein FliP [Eubacterium cellulosolvens 6]
gi|313470047|gb|EFR65380.1| flagellar biosynthetic protein FliP [Eubacterium cellulosolvens 6]
Length = 224
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 82/213 (38%), Positives = 131/213 (61%), Gaps = 4/213 (1%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
+T + T++++ P ++IM+T F R II+ S R +G+ PPN+V++ ++L
Sbjct: 15 NGGNTPTLSMIYTLTLVALLPSIVIMMTSFVRTIIILSFTRNALGVQQSPPNMVLVGISL 74
Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
F+T ++M+PT+ + E QP +IT+ AI+R+ P FM NT K L+ F+ MA
Sbjct: 75 FLTLFIMTPTITQINEEAYQPYQRGEITQEQAIERMQVPMKEFMLKNTETKTLNKFVKMA 134
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + I+ P+FM SEL+R F GFLI LPFL++D++VAT +M+MGM
Sbjct: 135 KTKK----LKNPKDYPLTIVTPAFMTSELKRGFMAGFLIYLPFLLLDVVVATTLMSMGMA 190
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+PPT +S+PFK++ FV ++GW LL ++ SF
Sbjct: 191 MMPPTMVSMPFKLLLFVSVNGWELLFSTIISSF 223
>gi|117928065|ref|YP_872616.1| flagellar biosynthesis protein FliP [Acidothermus cellulolyticus
11B]
gi|117648528|gb|ABK52630.1| flagellar biosynthetic protein FliP [Acidothermus cellulolyticus
11B]
Length = 318
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 87/234 (37%), Positives = 142/234 (60%), Gaps = 6/234 (2%)
Query: 14 PELVFAKSSLHDVMNIPADL--SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
P A + + + + + + + T+L++AP LI+ T F + I+V S+
Sbjct: 88 PTGPAAPNGPGSTVTVSINGVNGKPSQSIVIILLMTVLAVAPAALILTTSFTKVIVVLSL 147
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
R +G+ ++PPN V++ LALF++ +VMSPTL + +QP + IT + A +P
Sbjct: 148 TRNALGLQTIPPNQVLVGLALFLSLFVMSPTLSAMNKDAVQPYLKGHITASQAYDAGVQP 207
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
FM N TR+ DL+L +D +H S + L+P+F++SELR +F IGF+I
Sbjct: 208 LKTFMLNQTRKDDLALMIDASHQSRP----ASPKDVSMTTLVPAFVLSELRAAFIIGFVI 263
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIID++V++ +M+MGMMMLPP+ ISLPFK++ F+++DGW L+ L+ S+
Sbjct: 264 FVPFLIIDLVVSSSLMSMGMMMLPPSIISLPFKLLLFIMVDGWGLIARTLLSSY 317
>gi|296135631|ref|YP_003642873.1| flagellar biosynthetic protein FliP [Thiomonas intermedia K12]
gi|295795753|gb|ADG30543.1| flagellar biosynthetic protein FliP [Thiomonas intermedia K12]
Length = 255
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 95/232 (40%), Positives = 149/232 (64%), Gaps = 5/232 (2%)
Query: 16 LVFAKSSLHDVMNIPADLSI-STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
A+ + A + V+T T L P +L+M+T F R IIV S+L+
Sbjct: 27 WASAQVLPAFTSSPAAGGGTEYSLSVQTLLFMTALVFLPAMLLMMTAFTRIIIVLSLLKQ 86
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G +VPP+ VI+ L+LF+TF+VMSP L++ ++ I+PLM+NQIT A+Q A P
Sbjct: 87 ALGTTTVPPSQVIVGLSLFLTFFVMSPVLNQVNDVAIKPLMDNQITMQQALQTGAAPLRT 146
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM TR++DL+LF+ ++ + K + +LIP+F+ SEL+ +F+IGF+I +P
Sbjct: 147 FMLGQTRQEDLALFVKLSGH----KALDKPEDTPMTLLIPAFVTSELKTAFQIGFVIFIP 202
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
FLIIDM+VA ++M+MGMMML P ++S P K++ FVL+ GW L++ +L++SF+
Sbjct: 203 FLIIDMVVAAVLMSMGMMMLSPVTVSFPLKLMLFVLVGGWELVIGSLMQSFV 254
>gi|146278775|ref|YP_001168934.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC
17025]
gi|145557016|gb|ABP71629.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC
17025]
Length = 236
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 96/240 (40%), Positives = 145/240 (60%), Gaps = 5/240 (2%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
F LV + ++ S++T V+ + T+LS+ P L +M+TCFP
Sbjct: 1 MFMPLLVLAATAAPAAGQSLSVDFGDGSSLTTRSVQLIVLITLLSLVPALGMMITCFPFI 60
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+ V SILR +G+ PPN++I+SLALF+T+Y+M P + GI+PL N+I A+
Sbjct: 61 VTVLSILRQAIGLQQAPPNMLIVSLALFLTWYIMDPVFTEAWTRGIEPLTRNEIDIQQAL 120
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+ PF FM L L + R +I+ + +L+PSF++SE++R+F
Sbjct: 121 VLASAPFRGFMAAR-----LDLETFSTLQALRPGEISPPLEAPFSVLVPSFLLSEIQRAF 175
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
EIGFLI LPFLIID++VA ++M+MGMMM+PP +S+PFK+ FFV+ DGWSL+ LV+S+
Sbjct: 176 EIGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAVVSMPFKLAFFVVGDGWSLISGALVRSY 235
>gi|146282916|ref|YP_001173069.1| flagellar biosynthetic protein FliP [Pseudomonas stutzeri A1501]
gi|145571121|gb|ABP80227.1| flagellar biosynthetic protein FliP [Pseudomonas stutzeri A1501]
Length = 199
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 93/200 (46%), Positives = 130/200 (65%), Gaps = 4/200 (2%)
Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
T LS P ++++T F R IIVFSILR +G+ P N ++I L LF+T ++M+P DR
Sbjct: 1 MTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILIGLTLFLTLFIMAPVFDR 60
Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
+ +QP ++ QI AI R P FM TRE DL LF+ ++ TDI +
Sbjct: 61 INQDALQPYLSEQIPAQEAIARAEVPLKNFMLAQTRESDLELFVRLSQR----TDIASPE 116
Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK+
Sbjct: 117 AAPMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKI 176
Query: 226 IFFVLIDGWSLLVENLVKSF 245
+ FVL+DGW L++ L SF
Sbjct: 177 MLFVLVDGWGLIIGTLAGSF 196
>gi|294678995|ref|YP_003579610.1| flagellar biosynthetic protein FliP [Rhodobacter capsulatus SB
1003]
gi|294477815|gb|ADE87203.1| flagellar biosynthetic protein FliP [Rhodobacter capsulatus SB
1003]
Length = 240
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 105/240 (43%), Positives = 147/240 (61%), Gaps = 3/240 (1%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
AL L L + +++ + S++ + T+LS+AP L IMVTCFP
Sbjct: 3 VLALALTLMILAAPAGAQEITLDMGGNGSLTNSSLILIAGITLLSLAPGLAIMVTCFPFI 62
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+ V SILR MG+ PPN++IISLALF+T++VM PT S + GI+PL+ +I TA
Sbjct: 63 VTVLSILRQAMGLQQSPPNMLIISLALFLTWFVMEPTFMASYQAGIEPLIAQKIDIVTAF 122
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+R EPF +FM T D F +A T IL+PSFM+SE+ R+F
Sbjct: 123 ERGVEPFRIFMAGRT---DPETFTQLAAIREGATYTGTAREAPLSILVPSFMLSEITRAF 179
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
EIGFL+ LPFLIID++V+ I+M+MGMMM+PP ++LPFK+ FFV+ +GW LL LV+S+
Sbjct: 180 EIGFLVFLPFLIIDLVVSAILMSMGMMMVPPAVVALPFKLAFFVVANGWVLLSGALVRSY 239
>gi|83646770|ref|YP_435205.1| flagellar biosynthesis protein FliP [Hahella chejuensis KCTC 2396]
gi|83634813|gb|ABC30780.1| flagellar biosynthetic protein FliP [Hahella chejuensis KCTC 2396]
Length = 243
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 91/233 (39%), Positives = 141/233 (60%), Gaps = 4/233 (1%)
Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
+ A + + ++ + T+LS+AP LLI +T F R +IV S+L
Sbjct: 14 WADASTASFGVDLSGLDKSSPDEVASALQVLAVLTVLSLAPALLIALTSFTRIVIVLSML 73
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R GM PPN VII+L+LF+T + M+P ++ + +QP + ++ T A+ P
Sbjct: 74 RYAFGMQQTPPNTVIIALSLFLTLFTMAPVFNKIDQQAVQPYLAGELVFTEAVNAGLAPM 133
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
FM TREKDL+L ++MA T + I LI +FM+SEL+ +F+IGF+I
Sbjct: 134 REFMVRQTREKDLALAIEMAGEESPET----LNDISNTSLITAFMLSELQTAFQIGFVIF 189
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LPFL+ID++ A+++M+MGM+M+PP +ISLP K++ FVLI+GW+L+ + LV SF
Sbjct: 190 LPFLLIDLVSASVLMSMGMIMVPPLTISLPVKILMFVLIEGWTLVAQALVGSF 242
>gi|320538198|ref|ZP_08038093.1| flagellar biosynthetic protein FliP [Treponema phagedenis F0421]
gi|320145015|gb|EFW36736.1| flagellar biosynthetic protein FliP [Treponema phagedenis F0421]
Length = 273
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 80/228 (35%), Positives = 130/228 (57%), Gaps = 6/228 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
++ + P + ++ + T+++IAP LL+++T F R IV ++ + +
Sbjct: 50 PFINFDIREPRTNREVAFSIQLLLLLTLIAIAPSLLLLMTSFLRISIVLDFIKRALSLQQ 109
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
VPP V+ +ALF+T ++M P + +P+ + +I TA +P +FM
Sbjct: 110 VPPTQVLNGIALFLTLFIMWPVFNEVYTNSFKPMADGEINIETAYTEAEKPIRLFMYKQM 169
Query: 141 REKD--LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
++L M MA NT + ILIP+F++ EL +F+IG + LPF+II
Sbjct: 170 AHDSSYITLCMSMAKLPKPNT----LADVPTHILIPAFILHELTIAFQIGIFLYLPFIII 225
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
DM+VA+I+M+MGM+MLPP IS+PFK+I FVL+DGW+LL+ L SF+
Sbjct: 226 DMVVASILMSMGMIMLPPVQISMPFKLILFVLVDGWNLLIGQLFYSFL 273
>gi|15639705|ref|NP_219155.1| flagellar biosynthesis protein FliP [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025943|ref|YP_001933715.1| flagellar biosynthesis protein FliP [Treponema pallidum subsp.
pallidum SS14]
gi|2494564|sp|P74930|FLIP_TREPA RecName: Full=Flagellar biosynthetic protein fliP
gi|973197|gb|AAB00546.1| FliP [Treponema pallidum]
gi|3323020|gb|AAC65684.1| flagellar biosynthetic protein (fliP) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018518|gb|ACD71136.1| flagellar biosynthetic protein [Treponema pallidum subsp. pallidum
SS14]
gi|291060082|gb|ADD72817.1| flagellar biosynthetic protein FliP [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 271
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 127/233 (54%), Gaps = 6/233 (2%)
Query: 16 LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
++ + P + V+ + T++S+AP +L+++T F R IV ++
Sbjct: 43 PASRIPFINFDIREPQTNREVAFSVQLLLLLTLISLAPSILLLMTAFLRLSIVLDFIKRA 102
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
+ + VPP V+ +ALF+ ++M P +PL + Q+ TA P VF
Sbjct: 103 LSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSFKPLTDGQVDIQTAYTEAERPLRVF 162
Query: 136 MRNNT--REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
M + L M MA +T + +LIP+F++ EL +F+IG + L
Sbjct: 163 MYRQMAHDPSSVRLCMSMAKLPKPDT----LADVPTYVLIPAFILHELTVAFQIGIFLYL 218
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
PF+I+DM+VA+I+M+MGM+MLPP ISLPFK++ FVL+DGW+LL++ L SF+
Sbjct: 219 PFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLVDGWNLLIDRLFHSFL 271
>gi|289829471|ref|ZP_06547083.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
Length = 186
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 87/188 (46%), Positives = 131/188 (69%), Gaps = 4/188 (2%)
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
M+T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP
Sbjct: 1 MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQ 60
Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
+I+ A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++
Sbjct: 61 KISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYV 116
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL
Sbjct: 117 TSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLL 176
Query: 238 VENLVKSF 245
V +L +SF
Sbjct: 177 VGSLAQSF 184
>gi|119947195|ref|YP_944875.1| flagellar biosynthesis protein FliP [Psychromonas ingrahamii 37]
gi|119865799|gb|ABM05276.1| flagellar biosynthetic protein FliP [Psychromonas ingrahamii 37]
Length = 245
Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats.
Identities = 84/234 (35%), Positives = 133/234 (56%), Gaps = 5/234 (2%)
Query: 13 TPELVFAKSSLHDV-MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
+P FA L + + + ++ + T LS P ++M TCF R IIV +I
Sbjct: 15 SPFNSFASEGLSVLSITDTPTGQDYSVKLQILILMTALSFIPAFILMCTCFTRIIIVLAI 74
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LR +G+ PPN V++ +AL ++ +M P + P I+ TA +P
Sbjct: 75 LRQALGLQQSPPNQVLLGIALALSILIMKPVWTDVYDNAFVPYDAGDISLLTAASIAEKP 134
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
FM T L M++A + K + I + I++P+F+ISEL+ +F+IGF++
Sbjct: 135 VREFMLRQTHSSSLEQMMNIAG----EDENVKPEDISFAIILPAFVISELKTAFQIGFML 190
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIID++VA+++M+MGMMML P +SLPFK++ FVL+DGW++LV +L SF
Sbjct: 191 FMPFLIIDLVVASVLMSMGMMMLSPLIVSLPFKLLAFVLVDGWTMLVGSLSTSF 244
>gi|167630307|ref|YP_001680806.1| flagellar biosynthetic protein flip [Heliobacterium modesticaldum
Ice1]
gi|167593047|gb|ABZ84795.1| flagellar biosynthetic protein flip [Heliobacterium modesticaldum
Ice1]
Length = 243
Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats.
Identities = 92/245 (37%), Positives = 149/245 (60%), Gaps = 8/245 (3%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMN----IPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
A ++ + + + ++ + TILS+AP +LIM+T
Sbjct: 2 VLLLAIFYWVTPALAAPLQIPTVSFGVESTENPTEVSTSLQILFLLTILSLAPSILIMMT 61
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CF R I+V RT + + ++PPN V+I L LF+TF++M+PT + +QP + ++
Sbjct: 62 CFTRIIVVLHFTRTALALQTMPPNQVLIGLTLFLTFFIMAPTWSAINDQALQPYLAGTLS 121
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A+++ + P FM TREKDL+LF++M+ T I +++IP+F++SE
Sbjct: 122 QEQALEKASTPLREFMLKQTREKDLALFVNMSDMEQPQTYR----DIPIKVVIPAFILSE 177
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IG +I LPF++IDMIV +++M+MGMMMLPP ISLPFKV+ FVL+DGW L+V +
Sbjct: 178 LKTAFQIGAVIYLPFIVIDMIVGSVLMSMGMMMLPPMMISLPFKVLVFVLVDGWYLIVRS 237
Query: 241 LVKSF 245
L+ S+
Sbjct: 238 LILSY 242
>gi|212637763|ref|YP_002314288.1| flagellar biosynthesis protein FliP [Shewanella piezotolerans WP3]
gi|212559247|gb|ACJ31701.1| Flagellar transport protein FliP [Shewanella piezotolerans WP3]
Length = 242
Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M R L + + A + + T+LS P LL+M+T
Sbjct: 1 MWRVLLLLLVGFSSSAYANDGFTLFTLGDGAQAQSVNVKLEILALMTVLSFLPALLMMLT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R I+V +ILR +G+ PPN V+I +AL MT ++M P + P QI
Sbjct: 61 SFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMRPVGQAIYDEAFLPYDLGQIE 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
T A+ + P FM TRE DL + +A D I + +L+P+F++SE
Sbjct: 121 LTEAVVKAEVPLRKFMLAQTRETDLEQMLKIADEPT----TLTADEIPFFVLMPAFVLSE 176
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGWS+ V
Sbjct: 177 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 236
Query: 241 LVKSF 245
LV S+
Sbjct: 237 LVASY 241
>gi|84514806|ref|ZP_01002169.1| Flagellar transport protein FliP [Loktanella vestfoldensis SKA53]
gi|84510965|gb|EAQ07419.1| Flagellar transport protein FliP [Loktanella vestfoldensis SKA53]
Length = 252
Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 88/247 (35%), Positives = 150/247 (60%), Gaps = 8/247 (3%)
Query: 4 YCFFALFLVTPELVFAKSSL----HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
+ L + FA+ +V+ + + ++ + T+L+I P L+ +
Sbjct: 9 FGIIFLCSIPLGGAFAQVGGGLPALNVLVGNDGGTTYSLSLQILALMTVLTILPSFLLGI 68
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T F R II+ SILR MG PPN V+IS+ALF+TFYVM+PT + I P + ++
Sbjct: 69 TAFTRIIIILSILRQAMGTQQTPPNQVLISIALFLTFYVMAPTFEEIYSTTISPYLAGEL 128
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
+ AI+ A F+ NTRE +L++F +MA + N+ + Y +L+P+F+ S
Sbjct: 129 SAVAAIEGSANIMRGFLILNTREAELAMFAEMAG----DAPYASNEDVPYAVLLPAFITS 184
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL+ +F+IGFL+ LPFL+ID+++A+I+M++GMMML P ++LPFK++ FVL+DGW++ +
Sbjct: 185 ELKTAFQIGFLLFLPFLVIDLVIASILMSLGMMMLSPMLVALPFKLLLFVLVDGWAMTIG 244
Query: 240 NLVKSFI 246
++ +++
Sbjct: 245 SIASTYV 251
>gi|167626138|ref|YP_001676432.1| flagellar biosynthesis protein FliP [Shewanella halifaxensis
HAW-EB4]
gi|167356160|gb|ABZ78773.1| flagellar biosynthetic protein FliP [Shewanella halifaxensis
HAW-EB4]
Length = 242
Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 89/245 (36%), Positives = 133/245 (54%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M R + + + + + + + T+LS P LL+M+T
Sbjct: 1 MWRVLLVFVLSFSSAAYASDGLTLFSLADGDKTQAVSVKLEILALMTVLSFLPALLMMLT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R I+V +ILR +G+ PPN V+I +AL MT ++M P + P QI
Sbjct: 61 SFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMRPVGQEIYDDAFLPYDMGQIE 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ R P FM TRE DL + +A D I + +L+P+F++SE
Sbjct: 121 LPEAVARGEVPLRQFMLAQTRETDLEQMLKIADEP----ITLTADEIPFFVLMPAFVLSE 176
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGWS+ V
Sbjct: 177 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 236
Query: 241 LVKSF 245
LV S+
Sbjct: 237 LVASY 241
>gi|261341515|ref|ZP_05969373.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC
35316]
gi|288316313|gb|EFC55251.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC
35316]
Length = 250
Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats.
Identities = 88/244 (36%), Positives = 137/244 (56%), Gaps = 7/244 (2%)
Query: 2 IRYCFFALFLVTPELVFA-KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+ + LV+P+L+ A + A + + T+L + P++L+M+T
Sbjct: 9 LPWLLLGGLLVSPQLLAANGDITLFSSSTTAGGQDYNVKIEILILMTLLGLLPVMLMMMT 68
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CF RFIIV +ILR +G+ PPN ++ +AL +T VM P + I P N++IT
Sbjct: 69 CFTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYQDAIVPFQNDEIT 128
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A + P FM T K +S M +A + + ++ P++++SE
Sbjct: 129 MKQAFGKAEAPLKNFMLAQTSNKAMSQMMTIAGVTG------DPKEQDLTVVTPAYLLSE 182
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V
Sbjct: 183 LKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGT 242
Query: 241 LVKS 244
L S
Sbjct: 243 LTSS 246
>gi|22127344|ref|NP_670767.1| flagellar biosynthesis protein FliP [Yersinia pestis KIM 10]
gi|45442780|ref|NP_994319.1| flagellar biosynthesis protein FliP [Yersinia pestis biovar
Microtus str. 91001]
gi|51597653|ref|YP_071844.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP
32953]
gi|108809075|ref|YP_652991.1| flagellar biosynthesis protein FliP [Yersinia pestis Antiqua]
gi|108810732|ref|YP_646499.1| flagellar biosynthesis protein FliP [Yersinia pestis Nepal516]
gi|145597801|ref|YP_001161877.1| flagellar biosynthesis protein FliP [Yersinia pestis Pestoides F]
gi|150260265|ref|ZP_01916993.1| lateral flagellar export and assembly protein [Yersinia pestis
CA88-4125]
gi|162418133|ref|YP_001604861.1| flagellar biosynthesis protein FliP [Yersinia pestis Angola]
gi|165925078|ref|ZP_02220910.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939035|ref|ZP_02227587.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008695|ref|ZP_02229593.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166211840|ref|ZP_02237875.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399704|ref|ZP_02305228.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167418889|ref|ZP_02310642.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425117|ref|ZP_02316870.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167466357|ref|ZP_02331061.1| flagellar biosynthetic protein FliP [Yersinia pestis FV-1]
gi|170022955|ref|YP_001719460.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis
YPIII]
gi|218927896|ref|YP_002345771.1| flagellar biosynthesis protein FliP [Yersinia pestis CO92]
gi|229837392|ref|ZP_04457555.1| Flagellar biosynthesis protein fliP [Yersinia pestis Pestoides A]
gi|229840605|ref|ZP_04460764.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842844|ref|ZP_04462996.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
Orientalis str. India 195]
gi|229900929|ref|ZP_04516053.1| Flagellar biosynthesis protein fliP [Yersinia pestis Nepal516]
gi|270487690|ref|ZP_06204764.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27]
gi|294502773|ref|YP_003566835.1| putative flagellar assembly protein [Yersinia pestis Z176003]
gi|21960427|gb|AAM87018.1|AE013950_3 flagellar biosynthesis protein [Yersinia pestis KIM 10]
gi|45437646|gb|AAS63196.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Microtus str. 91001]
gi|51590935|emb|CAH22591.1| Putative flagellar assembly/export protein, fliP [Yersinia
pseudotuberculosis IP 32953]
gi|108774380|gb|ABG16899.1| flagellar assembly protein [Yersinia pestis Nepal516]
gi|108780988|gb|ABG15046.1| putative flagellar assembly protein [Yersinia pestis Antiqua]
gi|115346507|emb|CAL19383.1| putative flagellar assembly protein [Yersinia pestis CO92]
gi|145209497|gb|ABP38904.1| flagellar assembly protein [Yersinia pestis Pestoides F]
gi|149289673|gb|EDM39750.1| lateral flagellar export and assembly protein [Yersinia pestis
CA88-4125]
gi|162350948|gb|ABX84896.1| flagellar biosynthetic protein FliP [Yersinia pestis Angola]
gi|165912991|gb|EDR31616.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923278|gb|EDR40429.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992034|gb|EDR44335.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206586|gb|EDR51066.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166962883|gb|EDR58904.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167052208|gb|EDR63616.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055880|gb|EDR65661.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749489|gb|ACA67007.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis
YPIII]
gi|229682268|gb|EEO78360.1| Flagellar biosynthesis protein fliP [Yersinia pestis Nepal516]
gi|229690111|gb|EEO82168.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696971|gb|EEO87018.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229705515|gb|EEO91525.1| Flagellar biosynthesis protein fliP [Yersinia pestis Pestoides A]
gi|262360805|gb|ACY57526.1| putative flagellar assembly protein [Yersinia pestis D106004]
gi|262364750|gb|ACY61307.1| putative flagellar assembly protein [Yersinia pestis D182038]
gi|270336194|gb|EFA46971.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27]
gi|294353232|gb|ADE63573.1| putative flagellar assembly protein [Yersinia pestis Z176003]
gi|320016727|gb|ADW00299.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 256
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 87/246 (35%), Positives = 138/246 (56%), Gaps = 8/246 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI--PADLSISTWIVRTFGIFTILSIAPILLIM 58
+I L+ L+ A+ + N A + + T+L + PI+++M
Sbjct: 13 IISRGLLVGGLLYSPLLLAQEGGITLFNTVQTATGQDYNVKIEILILMTLLGLLPIMMLM 72
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + P ++
Sbjct: 73 MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVIPFQQDE 132
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
IT + A+ R P +M T K L M +A S + + ++ P++++
Sbjct: 133 ITLSQALGRAEAPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVVTPAYVL 186
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F++GF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V
Sbjct: 187 SELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLMV 246
Query: 239 ENLVKS 244
L S
Sbjct: 247 GTLTAS 252
>gi|153950465|ref|YP_001399618.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP
31758]
gi|152961960|gb|ABS49421.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP
31758]
Length = 256
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 88/246 (35%), Positives = 138/246 (56%), Gaps = 8/246 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI--PADLSISTWIVRTFGIFTILSIAPILLIM 58
+I L+ L+ A+ + N A + + T+L + PI+++M
Sbjct: 13 IISRGLLVGGLLYSPLLLAQEGGITLFNTVQTATGQDYNVKIEILILMTLLGLLPIMMLM 72
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + P ++
Sbjct: 73 MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVIPFQQDE 132
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
IT + A+ R P +M T K L M +A S + + ++ P++++
Sbjct: 133 ITLSQALGRAEVPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVVTPAYVL 186
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V
Sbjct: 187 SELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLMV 246
Query: 239 ENLVKS 244
L S
Sbjct: 247 GTLTAS 252
>gi|283782107|ref|YP_003372862.1| flagellar biosynthetic protein FliP [Pirellula staleyi DSM 6068]
gi|283440560|gb|ADB19002.1| flagellar biosynthetic protein FliP [Pirellula staleyi DSM 6068]
Length = 297
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 83/240 (34%), Positives = 131/240 (54%), Gaps = 6/240 (2%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
+ P L + ++ + T+LS+AP +L+M T F R ++V +
Sbjct: 54 LMPPADPVTELLRGNGEALTSPKRLSSTLQIMLLLTVLSLAPAILLMTTSFVRIVVVLGL 113
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN-QITETTAIQRVAE 130
LR +G +PP+ VI +LA+F+T +M+PT + I+P + +T A R +
Sbjct: 114 LRQALGTNQLPPSQVITALAMFLTLLIMTPTWNSVYHEAIEPYTSGADLTPEEAWNRGSL 173
Query: 131 PFWVFMRNNT----REKDLSLFMDM-AHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
P FM D+ LF + + D + +L+P+FM+SEL+ SF
Sbjct: 174 PIKRFMSRQIEVAGNSDDVWLFYEYLPEENRPAKPPETYDEVPLSVLLPAFMLSELKTSF 233
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGF I LPFLI+D++V+++ ++MGMMMLPP ISLP K++ FVL+DGW+L V L++SF
Sbjct: 234 LIGFQIYLPFLILDLVVSSVTISMGMMMLPPVMISLPLKLLLFVLVDGWTLTVRMLLESF 293
>gi|186896787|ref|YP_001873899.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis
PB1/+]
gi|186699813|gb|ACC90442.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis
PB1/+]
Length = 256
Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats.
Identities = 87/246 (35%), Positives = 138/246 (56%), Gaps = 8/246 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI--PADLSISTWIVRTFGIFTILSIAPILLIM 58
+I L+ L+ A+ + N A + + T+L + PI+++M
Sbjct: 13 IISRGLLVGGLLYSPLLLAQEGGITLFNTVQTATGQDYNVKIEILILMTLLGLLPIMMLM 72
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + P ++
Sbjct: 73 MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVIPFQQDE 132
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
IT + A+ R P +M T K L M +A S + + ++ P++++
Sbjct: 133 ITLSQALGRAEAPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVVTPAYVL 186
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F++GF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V
Sbjct: 187 SELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLMV 246
Query: 239 ENLVKS 244
L S
Sbjct: 247 GTLTAS 252
>gi|54297702|ref|YP_124071.1| flagellar biosynthesis protein FliP [Legionella pneumophila str.
Paris]
gi|53751487|emb|CAH12905.1| Flagellar biosynthetic protein FliP [Legionella pneumophila str.
Paris]
Length = 249
Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats.
Identities = 95/217 (43%), Positives = 140/217 (64%), Gaps = 5/217 (2%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ ++ T+L++ P LL+ +T F R IIV SILR +GM P N ++I
Sbjct: 35 GTNGSQSYSINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILI 94
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
+ALFMT++VMSP ++ E IQP MN +I + A+ +P FM N TR+ DLSLF
Sbjct: 95 GIALFMTYFVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPLRQFMLNQTRKNDLSLF 154
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
AH+ + D I +LIP+F+ SEL+ +F+IGF++ LPFLIID++V++++MA
Sbjct: 155 EKFAHNVPK-----TLDEIPMSVLIPAFITSELKTAFQIGFVLFLPFLIIDLVVSSLLMA 209
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMML P ISLPFK++ FV++DGW+L++ +L SF
Sbjct: 210 MGMMMLSPLIISLPFKIMLFVMVDGWTLVLGSLASSF 246
>gi|222100861|ref|YP_002535429.1| Flagellar biosynthesis protein FliP [Thermotoga neapolitana DSM
4359]
gi|221573251|gb|ACM24063.1| Flagellar biosynthesis protein FliP [Thermotoga neapolitana DSM
4359]
Length = 249
Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 130/228 (57%), Gaps = 7/228 (3%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
S+ + + + I T+L++AP +L++ T F R I+VFS+ R +G
Sbjct: 24 PSISIGVRPAEEPEDLVVTLEILLILTVLTLAPSILVLFTSFTRIIVVFSLFRNALGTRQ 83
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM---R 137
PPN V+I LALF+TF +M P + I P + +I QR+ FM
Sbjct: 84 TPPNQVMIGLALFLTFLIMQPVWNDIYNNAITPYLEREIGYQEMFQRINNRIREFMIKEL 143
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
N +D + N +IT+ + +LIP+F++ EL +F++G ++ +PF++
Sbjct: 144 KNHHNEDNVFMLAQNA----NLEITRVEEAPNSVLIPAFVLGELEIAFKMGVVLYVPFIV 199
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IDMIVA+I+++MGM+M+PP +SLPFK++ FV+ +GW LLVE L+KSF
Sbjct: 200 IDMIVASILLSMGMIMIPPVFVSLPFKILIFVMANGWDLLVEGLIKSF 247
>gi|54294676|ref|YP_127091.1| flagellar biosynthesis protein FliP [Legionella pneumophila str.
Lens]
gi|53754508|emb|CAH15992.1| Flagellar biosynthetic protein FliP [Legionella pneumophila str.
Lens]
Length = 249
Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats.
Identities = 95/217 (43%), Positives = 140/217 (64%), Gaps = 5/217 (2%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ ++ T+L++ P LL+ +T F R IIV SILR +GM P N ++I
Sbjct: 35 GTNGSQSYSINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILI 94
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
+ALFMT++VMSP ++ E IQP MN +I + A+ +P FM N TR+ DLSLF
Sbjct: 95 GIALFMTYFVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPLRQFMLNQTRKNDLSLF 154
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
AH+ + D I +LIP+F+ SEL+ +F+IGF++ LPFLIID++V++++MA
Sbjct: 155 EKFAHNVPK-----TLDEIPMSVLIPAFITSELKTAFQIGFILFLPFLIIDLVVSSLLMA 209
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMML P ISLPFK++ FV++DGW+L++ +L SF
Sbjct: 210 MGMMMLSPLIISLPFKIMLFVMVDGWTLVLGSLASSF 246
>gi|284989540|ref|YP_003408094.1| flagellar biosynthetic protein FliP [Geodermatophilus obscurus DSM
43160]
gi|284062785|gb|ADB73723.1| flagellar biosynthetic protein FliP [Geodermatophilus obscurus DSM
43160]
Length = 277
Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 131/231 (56%), Gaps = 4/231 (1%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
D ++I + + T+LS+AP +L++ T F + I+V S+ R
Sbjct: 50 APTAPVVPGVDGVDISIGGGSPSTSITLILAVTVLSVAPAVLLLATSFTKIIVVLSLTRN 109
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+GM PPN V+ +ALF+T +VM P E +QP +N +T T A P
Sbjct: 110 ALGMQMSPPNTVLTGIALFLTLFVMGPVFSEMNETAVQPYLNGAMTMTQAYDVGVVPLRE 169
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
F+ +NTRE +LSL + ++ + L+P+F++SEL+ +F IG ++ +P
Sbjct: 170 FLLDNTREDELSLMVGLSGEEAPTDAAA----VSMTTLVPAFVLSELKSAFIIGLVVFIP 225
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
FL++DM+V+ +M+MGMMM+PP +SLPFK++ FV++DGW+L+ LV S+
Sbjct: 226 FLVLDMLVSAALMSMGMMMVPPVIVSLPFKLLLFVVVDGWALITTALVGSY 276
>gi|120597289|ref|YP_961863.1| flagellar biosynthesis protein FliP [Shewanella sp. W3-18-1]
gi|146294566|ref|YP_001184990.1| flagellar biosynthesis protein FliP [Shewanella putrefaciens CN-32]
gi|120557382|gb|ABM23309.1| flagellar biosynthetic protein FliP [Shewanella sp. W3-18-1]
gi|145566256|gb|ABP77191.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens CN-32]
Length = 244
Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats.
Identities = 87/245 (35%), Positives = 141/245 (57%), Gaps = 3/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++R + FL P + ++ ++ + + T +S P++L+M+T
Sbjct: 2 IVRLLLLSTFLFVPHAIASEGLTLFTLDSGESSQAVNIKLEILALMTAISFLPVMLMMLT 61
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +ILR +G+ PPN V++ +AL +T ++M P D+ + P +I
Sbjct: 62 SFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPVGDKIYKEAYLPYDQGKIE 121
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
AI P FM TRE DL + +A+ T + + + + +L+P+F++SE
Sbjct: 122 LMEAISIAKVPLTRFMLAQTRETDLEQMLKIANEP---THMKTAEEVPFFVLMPAFVLSE 178
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFLI LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGW++ V
Sbjct: 179 LKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMIFVLVDGWAMTVST 238
Query: 241 LVKSF 245
L SF
Sbjct: 239 LTASF 243
>gi|163738043|ref|ZP_02145459.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis
BS107]
gi|163742561|ref|ZP_02149947.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis
2.10]
gi|161384146|gb|EDQ08529.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis
2.10]
gi|161388659|gb|EDQ13012.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis
BS107]
Length = 247
Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats.
Identities = 93/225 (41%), Positives = 140/225 (62%), Gaps = 3/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
S+ +++ SIS ++ + T+LS+AP LLIM+TCFP + V SILR +G+
Sbjct: 24 SAQDLSLSLGDGQSISARSIQLILLITVLSLAPGLLIMITCFPFLVTVLSILRQAIGLQQ 83
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
PPN+++ISLALF+T++VM P + GI PL+ Q+ T ++R +PF VFM
Sbjct: 84 APPNMLMISLALFLTYFVMEPVFTEAWTTGINPLIEEQLDVETGLERALQPFRVFMAARL 143
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
F +A I L+ SFM+SE+ R+F++GFL+ LPFL+ID+
Sbjct: 144 DPD---TFYAIADLRPSTAGIDPTADAPLSTLVSSFMLSEIARAFQVGFLVFLPFLVIDL 200
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA ++M+MGMMM+PP +S+PFK+ FFV+ DGWSL+ LV+S+
Sbjct: 201 VVAAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLIASALVRSY 245
>gi|299066546|emb|CBJ37736.1| Flagellar biosynthetic protein FliP [Ralstonia solanacearum CMR15]
Length = 227
Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats.
Identities = 94/216 (43%), Positives = 141/216 (65%), Gaps = 4/216 (1%)
Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
+ + +R T+L++ P LL+ VT F R IIV S+LR G+GM PPN +I
Sbjct: 15 TTPAADTAQALRIVLGLTVLAVLPALLVSVTSFLRIIIVLSMLRHGLGMQETPPNTALIG 74
Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
LALF+T + MSPTL++ QP M I+ A ++ + P FM TRE+DL+L +
Sbjct: 75 LALFLTLFTMSPTLEQINRQAFQPFMAGTISMEQAYEKGSAPLRDFMVRQTREQDLALMV 134
Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
+++ + D I LIP++M+SELR +F+IGF++ LPFL+ID++V++I+MA+
Sbjct: 135 ELSKAKTP----QSMDDISNVQLIPAYMLSELRTAFQIGFVVFLPFLLIDLVVSSILMAL 190
Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GMMM+PP+++SLP KV+ FVL+DGW LL++ LV SF
Sbjct: 191 GMMMMPPSTVSLPLKVLMFVLMDGWGLLLKALVGSF 226
>gi|148269377|ref|YP_001243837.1| flagellar biosynthesis protein FliP [Thermotoga petrophila RKU-1]
gi|170288035|ref|YP_001738273.1| flagellar biosynthetic protein FliP [Thermotoga sp. RQ2]
gi|281411926|ref|YP_003346005.1| flagellar biosynthetic protein FliP [Thermotoga naphthophila
RKU-10]
gi|147734921|gb|ABQ46261.1| flagellar biosynthetic protein FliP [Thermotoga petrophila RKU-1]
gi|170175538|gb|ACB08590.1| flagellar biosynthetic protein FliP [Thermotoga sp. RQ2]
gi|281373029|gb|ADA66591.1| flagellar biosynthetic protein FliP [Thermotoga naphthophila
RKU-10]
Length = 249
Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats.
Identities = 82/228 (35%), Positives = 131/228 (57%), Gaps = 7/228 (3%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
S+ + + + + T+L++AP +L++ T F R I+VFS+ R +G
Sbjct: 24 PSISIGVRPAEEPEDLVVTLEILLVLTVLALAPSILVLFTSFTRIIVVFSLFRNALGTRQ 83
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM---R 137
PPN V+I LALF+TF +M P + I P +N +I QRV FM
Sbjct: 84 TPPNQVMIGLALFLTFLIMQPVWNDIYNNAITPYLNKEIGYQEMFQRVNTRIREFMINEL 143
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
N +D + + + +I K + +LIP+F++ EL +F++G ++ +PF++
Sbjct: 144 KNHHNEDNVFML----AKNSGIEIAKIEEAPNAVLIPAFVLGELEVAFKMGVVLYVPFIV 199
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IDMIVA+I++AMGM+M+PP +SLPFK++ FV+ +GW LLVE L+KSF
Sbjct: 200 IDMIVASILLAMGMIMIPPVFVSLPFKILIFVMANGWDLLVEGLIKSF 247
>gi|183221911|ref|YP_001839907.1| flagellar biosynthesis protein FliP [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189911980|ref|YP_001963535.1| flagellar biosynthesis protein FliP [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776656|gb|ABZ94957.1| Endoflagellar biosynthesis pathway protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167780333|gb|ABZ98631.1| Flagellar biosynthetic protein FliP; putative membrane protein;
putative signal peptide [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 269
Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 144/228 (63%), Gaps = 7/228 (3%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+L +N ++ + + TILS+AP +++ VT F + +IVF +R + + +
Sbjct: 45 PNLSFNVNEARGPKETSLSLMILFLVTILSLAPAIVMSVTSFTKVVIVFDFVRRALSLQN 104
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN V++ LALF+TF++M+PT+ + + +QP +N +I ++ ++ + FM
Sbjct: 105 LPPNQVMMGLALFVTFFIMAPTIGKVNDEALQPYLNGKIDQSAFMEGSMKHLRQFMIRQL 164
Query: 141 RE---KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
+ KD++LF+ + + + + + +L+P+FM+SE++++F IG I +PF++
Sbjct: 165 GKDGTKDVALFLKIGKVQN----VKSFEDVPSYVLVPAFMLSEIKKAFIIGIYIFIPFIV 220
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
ID+IVA+ ++AMG MMLPP ISLP K+I F+LIDGW+LLV LV+S+
Sbjct: 221 IDLIVASALLAMGFMMLPPVMISLPLKLILFILIDGWNLLVLELVRSY 268
>gi|108763107|ref|YP_630667.1| type III secretion system protein [Myxococcus xanthus DK 1622]
gi|108466987|gb|ABF92172.1| FliP/MopC/SpaP family protein [Myxococcus xanthus DK 1622]
Length = 231
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 70/225 (31%), Positives = 124/225 (55%), Gaps = 9/225 (4%)
Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
S ++ + + + P L+M T F + +V SI+R+ +G +PP VI L
Sbjct: 7 NSDSFASRPLILILALAAMGLVPFALMMATSFVKISVVLSIVRSALGTQQIPPTQVITGL 66
Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQI---------TETTAIQRVAEPFWVFMRNNTR 141
A+ +T Y+M+P + + + A + EP ++
Sbjct: 67 AIILTVYIMAPVGQQMYRAAGLDIWAKGPGVFSSETVGSMLGAANKSKEPLREWLIKKVT 126
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
KD +LF ++A + D + ++ ++IP+F++SEL+ +F+IGFL+ +PF++IDM+
Sbjct: 127 TKDRALFFNLAKKMRKGEDRDAVESNDFMVIIPAFVVSELKEAFQIGFLLFVPFIVIDMV 186
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
VA I++A+GM ML PT+IS+PFK++ FVL+DGW L+ + LV ++
Sbjct: 187 VANILLALGMHMLSPTTISMPFKLLLFVLVDGWYLIAKGLVVGYL 231
>gi|261855324|ref|YP_003262607.1| flagellar biosynthesis protein FliP [Halothiobacillus neapolitanus
c2]
gi|261835793|gb|ACX95560.1| flagellar biosynthetic protein FliP [Halothiobacillus neapolitanus
c2]
Length = 274
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 92/232 (39%), Positives = 145/232 (62%), Gaps = 5/232 (2%)
Query: 15 ELVFAKSSLHDVMNIPADLSI-STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
A L V + ++ + T+L++ P LL+++T F R IIV S++R
Sbjct: 39 TQAMAAPGLPAVTLTTDGAQTQYSLTLQILALMTVLTLLPSLLLLMTSFTRIIIVLSLMR 98
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
+G+ P N ++I LALF+T ++M+P +S + GI+P M+ +IT AI++ AEP
Sbjct: 99 QALGLTQTPSNQILIGLALFLTLFIMAPVFQKSYDEGIKPYMDQKITANVAIEKAAEPLR 158
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM N TR+ D++LF ++ H + Y +L+ +F+ SEL+ +FEIGFLI +
Sbjct: 159 TFMLNQTRQSDIALFQNIGHYP----AFETPKDVPYTVLMAAFITSELKTAFEIGFLIFI 214
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PFLIID++VA+++M+MGMMML P +SLPFK++ FVL+DGW+L++ L SF
Sbjct: 215 PFLIIDLVVASVLMSMGMMMLSPMIVSLPFKLMLFVLVDGWTLIMGTLASSF 266
>gi|260574384|ref|ZP_05842388.1| flagellar biosynthetic protein FliP [Rhodobacter sp. SW2]
gi|259023280|gb|EEW26572.1| flagellar biosynthetic protein FliP [Rhodobacter sp. SW2]
Length = 242
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 95/238 (39%), Positives = 146/238 (61%), Gaps = 5/238 (2%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
AL ++ L + +N+ S+S ++ + T+LS+ P L +M+TCFP +
Sbjct: 9 ALAVLLIGLAGPVLAQELTLNLGDQGSLSARSIQLLVLITVLSLVPGLAVMITCFPFIVT 68
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
V SILR +G+ PPN++I+SLALF+T+YVM P + G++PL + TAI
Sbjct: 69 VLSILRQAIGLQQSPPNMLIVSLALFLTWYVMDPVFTEAWTTGMEPLTRGETDLQTAIPA 128
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
+ PF VFM + A + R + + +++PSF++SE++R+FEI
Sbjct: 129 ILAPFRVFMSARMDADTFA-----AMQALRPGESSSVAQAPLSLMVPSFLLSEIQRAFEI 183
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GFLI LPFLIID++VA ++M+MGMMM+PP+ +SLPFK+ FFV+ DGWSL+ LV+S+
Sbjct: 184 GFLIFLPFLIIDLVVAAVLMSMGMMMVPPSIVSLPFKLAFFVVADGWSLVSGALVRSY 241
>gi|217077267|ref|YP_002334985.1| flagellar biosynthesis protein FliP [Thermosipho africanus TCF52B]
gi|217037122|gb|ACJ75644.1| flagellar biosynthetic protein FliP [Thermosipho africanus TCF52B]
Length = 251
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 79/248 (31%), Positives = 136/248 (54%), Gaps = 9/248 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ +F+ + ++ ++ P + + T+LS+AP +LI+ T
Sbjct: 6 VLIFLVIVFVSFAQDEVPLPNISIQLSPPQQPRDLVNTLEILLLLTVLSLAPSILILFTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIVFS LR +G PPN ++I LALF+TF++M P + I P +N++I
Sbjct: 66 FTRIIIVFSFLRNALGTRQTPPNQILIGLALFLTFFIMQPVWNDIYNNAITPYLNSEIGY 125
Query: 122 TTAIQRVAEPFWVFMRN----NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
R + FM + E ++ + D I + +LIP+F+
Sbjct: 126 EELFSRSMDRLRTFMITELKIHHNEDNVFMLADNVGKE-----IDSVEEAPNSVLIPAFV 180
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
I EL F++G L+ +PF+++DM+VA+I++++GM+M+PP +SLPFK++ FVL++GW +L
Sbjct: 181 IGELEIGFKMGILLYIPFIVMDMVVASILLSLGMIMIPPVLVSLPFKILLFVLVNGWDML 240
Query: 238 VENLVKSF 245
+ +L+KSF
Sbjct: 241 IGSLIKSF 248
>gi|312883878|ref|ZP_07743595.1| type III secretion system protein [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368336|gb|EFP95871.1| type III secretion system protein [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 216
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 71/208 (34%), Positives = 124/208 (59%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M
Sbjct: 8 LNLIVSLALLALVPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIFIM 67
Query: 100 SPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + + Q + + + I +P+ F++ + RE + F D A +
Sbjct: 68 APVGFETYDYVKQNEISLEDPESIEGVIDNGLQPYREFLKKHIRETESVFFTDAARALWP 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P
Sbjct: 128 KKYVERLETDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ISLPFK++ FVL+DGW+ L LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215
>gi|226313054|ref|YP_002772948.1| flagellar biosynthetic protein FliP precursor [Brevibacillus brevis
NBRC 100599]
gi|226096002|dbj|BAH44444.1| flagellar biosynthetic protein FliP precursor [Brevibacillus brevis
NBRC 100599]
Length = 253
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 98/250 (39%), Positives = 152/250 (60%), Gaps = 12/250 (4%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVM--------NIPADLSISTWIVRTFGIFTILSIAPIL 55
A+ L P++ A ++ ++ ++ I T+LS+AP +
Sbjct: 8 LMLVAVLLSVPDMAMAAPVGTPLVPSIDLKIGGGTGTPQETSTAIQLLLILTVLSVAPAI 67
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
L+++T F R IIV S +R + +PPN V+I+LALFMTF++M+PTL + E +QP M
Sbjct: 68 LLLMTSFARIIIVLSFVRNALATQQMPPNQVLIALALFMTFFIMAPTLGQVNETAVQPFM 127
Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
++T+ A PF FM TREKDL+LF++ + T I L+P+
Sbjct: 128 QGKLTQQQAFDAAVIPFKQFMAKQTREKDLALFLEYTKAERPKT----IQDIPLNALVPA 183
Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
+ ISEL+ +F+IGF+I +PFL+IDMI+++I+M MGMMMLPP ISLPFK++ F+++DGW
Sbjct: 184 YAISELKTAFQIGFMIFIPFLVIDMIISSILMGMGMMMLPPVMISLPFKILLFIMVDGWY 243
Query: 236 LLVENLVKSF 245
L+V++L+ SF
Sbjct: 244 LIVKSLLTSF 253
>gi|238752883|ref|ZP_04614348.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia
rohdei ATCC 43380]
gi|238708922|gb|EEQ01175.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia
rohdei ATCC 43380]
Length = 248
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 89/246 (36%), Positives = 141/246 (57%), Gaps = 8/246 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMN--IPADLSISTWIVRTFGIFTILSIAPILLIM 58
++ F L+ L+ A+ + + A + + T+L + PI+++M
Sbjct: 5 ILSGGLFISGLLYSPLLLAQEGGITLFSTVPTAAGKDFNVKIEILILMTLLGLLPIMMLM 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + E + P N++
Sbjct: 65 MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHEDAVIPFQNDE 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
IT A++R P +M T K L MD+A + + + ++ P++++
Sbjct: 125 ITLPQALRRAEIPLKNYMLAQTSTKSLEQMMDIAQVTG------EPQQQDLTVVTPAYVL 178
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V
Sbjct: 179 SELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIV 238
Query: 239 ENLVKS 244
L S
Sbjct: 239 GTLTAS 244
>gi|238762376|ref|ZP_04623347.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia
kristensenii ATCC 33638]
gi|238699361|gb|EEP92107.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia
kristensenii ATCC 33638]
Length = 248
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 90/246 (36%), Positives = 139/246 (56%), Gaps = 8/246 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI--PADLSISTWIVRTFGIFTILSIAPILLIM 58
+I L+ L+ A+ + + A + + T+L + PI+++M
Sbjct: 5 IISSGLVISALLYSPLLLAQQGGITLFSTAQTAAGQDYNVKIEILILMTLLGLLPIMMLM 64
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + P N++
Sbjct: 65 MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKVHQDAVIPFQNDE 124
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
IT A+ R P +M T K L MD+A S + + I+ P++++
Sbjct: 125 ITLPQALARAEIPLKNYMLAQTSNKSLDQMMDIAQVSG------EPQQQDLTIVTPAYLL 178
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V
Sbjct: 179 SELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIV 238
Query: 239 ENLVKS 244
L S
Sbjct: 239 GTLTAS 244
>gi|15643461|ref|NP_228507.1| flagellar biosynthesis protein FliP [Thermotoga maritima MSB8]
gi|4981221|gb|AAD35780.1|AE001741_13 flagellar biosynthesis protein FliP [Thermotoga maritima MSB8]
Length = 249
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 130/228 (57%), Gaps = 7/228 (3%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
S+ + + + + T+L++AP +L++ T F R I+VFS+ R +G
Sbjct: 24 PSISIGVRPAEEPEDLVVTLEILLVLTVLALAPSILVLFTSFTRIIVVFSLFRNALGTRQ 83
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM---R 137
PPN V+I LALF+TF +M P + I P +N + QRV FM
Sbjct: 84 TPPNQVMIGLALFLTFLIMQPVWNDIYNNAITPYLNKETGYQEMFQRVNTRIREFMINEL 143
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
N +D + + + +I K + +LIP+F++ EL +F++G ++ +PF++
Sbjct: 144 KNHHNEDNVFML----AKNSGIEIAKIEEAPNAVLIPAFVLGELEVAFKMGVVLYVPFIV 199
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IDMIVA+I++AMGM+M+PP +SLPFK++ FV+ +GW LLVE L+KSF
Sbjct: 200 IDMIVASILLAMGMIMIPPVFVSLPFKILIFVMANGWDLLVEGLIKSF 247
>gi|257095348|ref|YP_003168989.1| flagellar biosynthesis protein FliP [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047872|gb|ACV37060.1| flagellar biosynthetic protein FliP [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 250
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 97/233 (41%), Positives = 144/233 (61%), Gaps = 7/233 (3%)
Query: 16 LVFAKSSLHDVMNIP---ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
+A++ ++ T ++T T L+ P L+M+T F R IIV S+L
Sbjct: 20 AAWAQAGGLPMVTSTPGVGGSQTYTLSIQTLLTLTALTFIPAALLMMTSFTRIIIVLSLL 79
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R +G + PPN V++ L+LF+TF++MSP LD PL N+IT AI+R A P
Sbjct: 80 RHALGTQTSPPNQVLLGLSLFLTFFIMSPVLDTVYTEAYLPLSENRITYLQAIERGAVPL 139
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
FM TRE D++LF M ++ D I R+LIP+F+ SEL+ +F+IGF+I
Sbjct: 140 RKFMLKQTREADIALFARMTNAPR----FQSTDDIPMRLLIPAFVTSELKTAFQIGFIIF 195
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLI+DM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW LL+ +LV SF
Sbjct: 196 IPFLIVDMVVASVLMSMGMMMMSPVMVALPFKLMLFVLVDGWHLLLGSLVASF 248
>gi|237653572|ref|YP_002889886.1| flagellar biosynthesis protein FliP [Thauera sp. MZ1T]
gi|237624819|gb|ACR01509.1| flagellar biosynthetic protein FliP [Thauera sp. MZ1T]
Length = 257
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 91/224 (40%), Positives = 143/224 (63%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ + ++T + T+LS P L++M TCF R +IVFS+LR MG +
Sbjct: 36 PALTTSPAAGGGTTYSLTIQTLMLMTLLSFIPALVLMTTCFTRIVIVFSLLRQAMGTQTA 95
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN V++ LALF+TF+VM+P +R P+ +I A++R + P FM R
Sbjct: 96 PPNQVLLGLALFLTFFVMAPVGERVYTEAYLPMSEGRIQFDEALERASVPVKGFMLKQVR 155
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
E DL+LF +A + K + + R++IP+F+ SEL+ +F+IGF++ +PF+IIDM+
Sbjct: 156 EPDLALFAGLAKLP----PVDKAEDLPMRVVIPAFVTSELKTAFQIGFIVFIPFIIIDMV 211
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++M+MGMMM+ P +SLPFK++ FVL+DGW+LL+ +LV+SF
Sbjct: 212 VASVLMSMGMMMMSPVIVSLPFKIMLFVLVDGWTLLIGSLVQSF 255
>gi|327478782|gb|AEA82092.1| flagellar biosynthesis protein FliP [Pseudomonas stutzeri DSM 4166]
Length = 251
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 83/232 (35%), Positives = 130/232 (56%), Gaps = 4/232 (1%)
Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
+N + + ++ I T+L P +L+M+TCF RFIIV +IL
Sbjct: 20 LAAQAAGGEITLFNLNDTENGQEFSVKLQILIIMTLLGFLPAMLMMMTCFTRFIIVLAIL 79
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R +G+ PPN V+I +AL +T VM P +P N++IT A+
Sbjct: 80 RQAIGLQQSPPNQVLIGIALIVTLLVMRPVWQEIHSQAYEPFHNDEITLEQALDSAKGSL 139
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
FM T + L + +A D +++ +L+P+F++SEL+ +F++GF+I
Sbjct: 140 AGFMLAQTNKNSLETMVALAGEQLP----EDLDELDFSLLLPAFVLSELKTAFQLGFMIF 195
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
+PFL+ID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+LL+ L S
Sbjct: 196 VPFLVIDLVVASVLMAMGMMMLSPMMISLPFKLMVFVLVDGWALLMGTLTTS 247
>gi|145301463|ref|YP_001144302.1| type III secretion system protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|38201229|emb|CAD56764.1| ascR protein [Aeromonas salmonicida subsp. salmonicida]
gi|66947958|emb|CAE83095.1| AscR protein [Aeromonas salmonicida subsp. salmonicida]
gi|142856345|gb|ABO92554.1| AscR protein [Aeromonas salmonicida subsp. salmonicida A449]
gi|145284338|gb|ABP51919.1| AscR [Aeromonas veronii bv. sobria]
Length = 217
Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 120/208 (57%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM
Sbjct: 8 LNLIVGLALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVM 67
Query: 100 SPTL--DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + + + + + P+ F++ + ++ + F+D
Sbjct: 68 APVGFATQDYLRQNEVSLAKSESVEKFLDEGIAPYRDFLKKQIKPREHAFFIDSTKQLWP 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + + IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P
Sbjct: 128 SKYADRLEPDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPM 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ISLPFK++ FVL+DGW+ L LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWARLTHGLVISY 215
>gi|332162918|ref|YP_004299495.1| Lateral flagellar export/assembly protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325667148|gb|ADZ43792.1| Lateral flagellar export/assembly protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862337|emb|CBX72497.1| flagellar biosynthetic protein fliP [Yersinia enterocolitica
W22703]
Length = 256
Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 89/246 (36%), Positives = 139/246 (56%), Gaps = 8/246 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI--PADLSISTWIVRTFGIFTILSIAPILLIM 58
+I L+ L+ A+ + + A + + T+L + PI+++M
Sbjct: 13 IISSGLVISGLLYSPLLLAQEGGITLFSTAQTAAGQDYNVKIEILILMTLLGLLPIMMLM 72
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + P N++
Sbjct: 73 MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKVHQDAVIPFQNDE 132
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
IT A+ R P +M T K L MD+A S + + ++ P++++
Sbjct: 133 ITLPQALARAEVPLKNYMLAQTSTKSLDQMMDIAQVSG------EPQQQDLTVVTPAYLL 186
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V
Sbjct: 187 SELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIV 246
Query: 239 ENLVKS 244
L S
Sbjct: 247 GTLTAS 252
>gi|163802009|ref|ZP_02195905.1| translocation protein in type III secretion [Vibrio sp. AND4]
gi|159174150|gb|EDP58958.1| translocation protein in type III secretion [Vibrio sp. AND4]
Length = 216
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 72/208 (34%), Positives = 126/208 (60%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M
Sbjct: 8 LNLIVSLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67
Query: 100 SPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + + Q + + T I+ +P+ F++ + RE + + F D A +
Sbjct: 68 APVGFETYDYVKQHDISLEDSETIEGLIESGLQPYREFLKKHIRETESAFFTDAAKTLWP 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P
Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ISLPFK++ FVL+DGW+ L LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215
>gi|56695119|ref|YP_165466.1| flagellar biosynthesis protein FliP [Ruegeria pomeroyi DSS-3]
gi|56676856|gb|AAV93522.1| flagellar biosynthetic protein FliP [Ruegeria pomeroyi DSS-3]
Length = 247
Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats.
Identities = 96/243 (39%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
L L ++ +++ S+S ++ + T+LS+AP L IM+TCFP
Sbjct: 7 VLAAITLLTGAMLAGPVAAQDISLSLGEGGSVSARTIQLILLITVLSLAPGLAIMITCFP 66
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
+ V +ILR G+G+ PPN++I+SLALF+T++VM P + GI P+M ++
Sbjct: 67 FLVTVLAILRQGIGLQQSPPNMLIVSLALFLTYFVMEPVFTEAWTTGIAPMMAEELALEP 126
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A+++ PF FM D F MA+ +T +L+PSFM+SE+ R
Sbjct: 127 ALEKAIAPFKAFMAARL---DADTFFAMANLRPDGAALTATPEAPLSVLVPSFMLSEIAR 183
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGFL+ LPFLIID++VA ++M+MGMMM+PP ++SLPFK+ FFVL DGWSL+ LV+
Sbjct: 184 AFQIGFLVFLPFLIIDLVVAAVLMSMGMMMVPPATVSLPFKLAFFVLADGWSLIASALVR 243
Query: 244 SFI 246
S++
Sbjct: 244 SYM 246
>gi|160902840|ref|YP_001568421.1| flagellar biosynthesis protein FliP [Petrotoga mobilis SJ95]
gi|160360484|gb|ABX32098.1| flagellar biosynthetic protein FliP [Petrotoga mobilis SJ95]
Length = 249
Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats.
Identities = 85/249 (34%), Positives = 139/249 (55%), Gaps = 9/249 (3%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ A LV + + +N +++ T + I T+LS+AP L++ T
Sbjct: 4 LILFILAFSLVFSQNTVQLPGVDIQINPNEEVNTLTPTLTILLIVTVLSLAPGFLMLFTS 63
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R ++V S LR MG PPN V+++LALF+T +M P + + I P N+I+
Sbjct: 64 FTRIVVVLSFLRQAMGTRQAPPNQVMLALALFLTIMIMFPVFNGVYQEAIIPYNQNEISY 123
Query: 122 TTAIQRVAEPFWVFM----RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
AIQ F FM + E D+ + + I + ++IL+P+F
Sbjct: 124 EEAIQISWLQFKDFMISEIVAHKNEDDIYMLSSSMNVE-----IDNIEETPFQILVPAFA 178
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
ISEL +F++ L+ LPF+I+DM+VA+I+++MGM+M+PP ISLPFK++ FV+++GW L+
Sbjct: 179 ISELEIAFKMSILLYLPFIIVDMVVASILLSMGMIMIPPILISLPFKIMIFVMVNGWDLI 238
Query: 238 VENLVKSFI 246
+ LV+SF+
Sbjct: 239 IGGLVRSFV 247
>gi|126176172|ref|YP_001052321.1| flagellar biosynthesis protein FliP [Shewanella baltica OS155]
gi|125999377|gb|ABN63452.1| flagellar biosynthetic protein FliP [Shewanella baltica OS155]
Length = 244
Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats.
Identities = 86/245 (35%), Positives = 142/245 (57%), Gaps = 3/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++R ++ L P+ + ++ ++ D + + T +S PI+L+M+T
Sbjct: 2 IVRVLLLSILLFAPQALASEGLTLFTLDSAQDSQAVNIKLEILALMTAISFLPIMLMMLT 61
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +ILR +G+ PPN V++ +AL +T ++M P D+ + P +I
Sbjct: 62 SFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPVGDKIYKEAYLPYDQGKIE 121
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ P FM TR DL + +A+ T + + + + +L+P+F++SE
Sbjct: 122 LMEAVSIAKVPLTRFMLAQTRATDLEQMLKIANEP---THMKTAEEVPFFVLMPAFVLSE 178
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGWS+ V
Sbjct: 179 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 238
Query: 241 LVKSF 245
L SF
Sbjct: 239 LTASF 243
>gi|54124952|gb|AAV30220.1| AscR [Aeromonas hydrophila]
Length = 217
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 120/208 (57%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM
Sbjct: 8 LNLIVGLALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVM 67
Query: 100 SPTL--DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + + + + + P+ F++ + ++ + F+D
Sbjct: 68 APVGFATQGYLHQNEVSLTKSESVEKFLDEGMAPYRAFLKKQIKPREHAFFIDSTKQLWP 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + + IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P
Sbjct: 128 SEYADRLEPDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPM 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ISLPFK++ FVL+DGW+ L LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWARLTHGLVTSY 215
>gi|310816848|ref|YP_003964812.1| flagellar biosynthesis protein FliP [Ketogulonicigenium vulgare
Y25]
gi|308755583|gb|ADO43512.1| flagellar biosynthesis protein FliP [Ketogulonicigenium vulgare
Y25]
Length = 244
Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats.
Identities = 90/242 (37%), Positives = 139/242 (57%), Gaps = 5/242 (2%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIP-ADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
F + A+ + + + S++ V+ + T++S+ P L IM T FP
Sbjct: 6 LFSVALTLLAGAAGAQGVDIQSLGLDFGEGSVAGRSVQLLVMVTLISLVPALAIMFTSFP 65
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
+ V SILR G+G PPN++I++LALF+T+YVM+P D + GI PL+ +++
Sbjct: 66 FMVTVLSILRQGLGTQQSPPNMLIVTLALFLTWYVMAPVFDEAWANGIAPLLEDRLPVDA 125
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A++ PF FM + +T L+PSF++SEL R
Sbjct: 126 ALRAAMAPFQTFMSGRVDPTTYQTMASL----RPDTVGVAVTDAPLSTLVPSFLLSELSR 181
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGFLI LPFLIID++VA ++M+MGMMM+PP ++LPFK+ FFV+ DGWSLL +LV+
Sbjct: 182 AFQIGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAVVALPFKLAFFVVADGWSLLASSLVR 241
Query: 244 SF 245
++
Sbjct: 242 NY 243
>gi|226320576|ref|ZP_03796136.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 29805]
gi|226233995|gb|EEH32716.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 29805]
Length = 254
Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats.
Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
M + F LF L FA++ N S + ++ + TI+++
Sbjct: 1 MRKCFIFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PP +++ LALF+T + M PT + E
Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
PL ++I + P +FM R +++ LFM M++ +
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPK----NFSEVP 176
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254
>gi|254444823|ref|ZP_05058299.1| flagellar biosynthetic protein FliP [Verrucomicrobiae bacterium
DG1235]
gi|198259131|gb|EDY83439.1| flagellar biosynthetic protein FliP [Verrucomicrobiae bacterium
DG1235]
Length = 257
Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats.
Identities = 87/256 (33%), Positives = 150/256 (58%), Gaps = 16/256 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIP-----------ADLSISTWIVRTFGIFTIL 49
+ + A+ L A+++ D P ++ + T+L
Sbjct: 5 LSIFWILAIALFCVSAASAQTAAPDPAGSPGLQLSVNMGGEDGQQDVGAAIQVLLLMTLL 64
Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM 109
++ P +++++T F R IIV +RT +G+ P N +I+ L+L +TF++M P L +
Sbjct: 65 TLGPSIVVLMTSFTRIIIVLGFVRTAIGVHQAPSNQIIVGLSLIITFFIMQPVLSNVNDN 124
Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
+QPLM +IT A + + P FM N TR +D+ F+D+++ T +
Sbjct: 125 ALQPLMAKEITTAQAFEAGSGPLREFMLNQTRLQDIEFFLDLSNYGP-----TTASELPM 179
Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
R+++P+F++SE+R +F++GFLI LPF+++D +V T +MAMGMMM+PP ISLPFK++ FV
Sbjct: 180 RVVVPAFVMSEIRTAFKMGFLIFLPFIMVDFLVGTTLMAMGMMMMPPVVISLPFKLLLFV 239
Query: 230 LIDGWSLLVENLVKSF 245
L+DGW+L++++LV+SF
Sbjct: 240 LVDGWTLVIKSLVQSF 255
>gi|268316332|ref|YP_003290051.1| flagellar biosynthetic protein FliP [Rhodothermus marinus DSM 4252]
gi|262333866|gb|ACY47663.1| flagellar biosynthetic protein FliP [Rhodothermus marinus DSM 4252]
Length = 269
Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats.
Identities = 91/195 (46%), Positives = 140/195 (71%), Gaps = 4/195 (2%)
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
AP ++I+ T F R +++FSILRT +G+ PP V+I LALF+T ++M P D+ + +
Sbjct: 77 APAIIILTTSFTRLVVIFSILRTALGLQQSPPTQVLIGLALFLTLFIMYPVFDQIHDEAL 136
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
+P ++ +IT+ A++R A P FM TREKDL LFMD+A+ + + + + I
Sbjct: 137 RPYLDGEITQQVALERAAAPLRAFMLRQTREKDLMLFMDLANVE----AFDRPEDVPFYI 192
Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
L+P+F+ISELR +F+IGF+I LPFL++D+IVA+++M+MGMMMLPP ISLP K++ FVL
Sbjct: 193 LVPAFVISELRIAFQIGFMIFLPFLLVDLIVASVLMSMGMMMLPPVMISLPLKLLLFVLA 252
Query: 232 DGWSLLVENLVKSFI 246
DGW L+VE++V+ ++
Sbjct: 253 DGWYLVVESVVRGYL 267
>gi|78485085|ref|YP_391010.1| flagellar biosynthesis protein FliP [Thiomicrospira crunogena
XCL-2]
gi|78363371|gb|ABB41336.1| flagellar biosynthetic protein FliP [Thiomicrospira crunogena
XCL-2]
Length = 252
Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats.
Identities = 95/246 (38%), Positives = 146/246 (59%), Gaps = 7/246 (2%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
R F L+ P + F++ + A T ++ + T L++ P LI +T
Sbjct: 6 RSLFGIALLLFPIMAFSEPGIPAFTVETDAAGNQDYTLTIQILLLMTGLTLLPAALIAMT 65
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R ++V ++LR +G P N V+I LALF+T ++MSP LD+ + + P + QI
Sbjct: 66 SFLRIVVVLALLRQALGTMQTPSNQVLIGLALFLTLFIMSPVLDKIYDTAVSPYLEEQIK 125
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
AI P FM TR DL +F +MA + +T + + +++LIP++M SE
Sbjct: 126 FKEAIDVAKTPIHQFMIQQTRADDLGMFAEMA-----DIQLTDPESVPFKVLIPAYMTSE 180
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF+I +PFLIID++VAT++M+MGMMML P ISLPFK++ FVLIDGW+L++
Sbjct: 181 LKTAFQIGFMIFIPFLIIDLVVATLLMSMGMMMLSPMIISLPFKIMLFVLIDGWALIMGT 240
Query: 241 LVKSFI 246
L SF+
Sbjct: 241 LANSFV 246
>gi|330505666|ref|YP_004382535.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01]
gi|328919952|gb|AEB60783.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01]
Length = 250
Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats.
Identities = 83/228 (36%), Positives = 126/228 (55%), Gaps = 4/228 (1%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
N D + ++ I T+L P LL+M+TCF RFIIV +ILR +
Sbjct: 23 AAGGDITLFNFNDTEDGQTLSVKLQILLIMTLLGFLPALLMMMTCFTRFIIVLAILRQAI 82
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G+ PPN V+I +AL +T VM P P +QI+ + FM
Sbjct: 83 GLQQSPPNPVLIGIALCLTLLVMRPVWQEMYTEAYVPFEADQISLEQGLGEGKRIISQFM 142
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
T + L + +A + +++ +L+P+F++SEL+ +F++GF+I +PFL
Sbjct: 143 LAQTSKNSLETLVALADEEMPDDLAQ----LDFSLLLPAFVLSELKTAFQLGFMIFVPFL 198
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
+ID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+LLV L S
Sbjct: 199 VIDLVVASVLMAMGMMMLSPMMISLPFKLLVFVLVDGWTLLVGTLTTS 246
>gi|15594620|ref|NP_212409.1| flagellar biosynthesis protein FliP [Borrelia burgdorferi B31]
gi|218249847|ref|YP_002374798.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi ZS7]
gi|226321593|ref|ZP_03797119.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi Bol26]
gi|2494561|sp|Q44763|FLIP_BORBU RecName: Full=Flagellar biosynthetic protein fliP
gi|1165260|gb|AAA85599.1| FliP [Borrelia burgdorferi]
gi|2688191|gb|AAC66673.1| flagellar biosynthesis protein (fliP) [Borrelia burgdorferi B31]
gi|218165035|gb|ACK75096.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi ZS7]
gi|226232782|gb|EEH31535.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi Bol26]
gi|312149165|gb|ADQ29236.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi N40]
Length = 254
Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats.
Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
M + F LF L FA++ N S + ++ + TI+++
Sbjct: 1 MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PP +++ LALF+T + M PT + E
Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
PL ++I + P +FM R +++ LFM M++ +
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPK----NFSEVP 176
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254
>gi|39545585|gb|AAR27892.1| AscR [Aeromonas hydrophila]
Length = 217
Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 120/208 (57%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM
Sbjct: 8 LNLIVGLALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVM 67
Query: 100 SPTL--DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + + + + + P+ F++ + ++ + F+D
Sbjct: 68 APVGFATQDYLRQNEVSLAKSESVEKFLDEGMAPYRTFLKKQIKPREHAFFIDSTKQLWP 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + + IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P
Sbjct: 128 SEYADRLESDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPM 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ISLPFK++ FVL+DGW+ L LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWARLTHGLVISY 215
>gi|187918149|ref|YP_001883712.1| flagellar biosynthesis protein FliP [Borrelia hermsii DAH]
gi|119860997|gb|AAX16792.1| flagellar biosynthetic protein FliP [Borrelia hermsii DAH]
Length = 254
Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats.
Identities = 86/258 (33%), Positives = 139/258 (53%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
M + LFL L FA++ + + ++ I T++++
Sbjct: 1 MGKKLSLFLFLGVINLAFAQTKSLQPTTGLNFPFVDLVNSVGGGIVFPLQLLLILTVITL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PPN VI+ LALF+T + M PT + +
Sbjct: 61 SPAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKDAY 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTR---EKDLSLFMDMAHSSHRNTDITKNDHIE 168
PL +++I+ R P FM +++ LFM +++ S +
Sbjct: 121 LPLKDSKISFNEFYDRGIAPLRNFMYKQMSNSKHEEIKLFMSISNYSRPK----NFSEVP 176
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI SF++ EL+ +F++G LI LPF++ID+IVA ++MAMGM+MLPP ISLPFK+I F
Sbjct: 177 THVLIASFVLHELKVAFKMGILIFLPFIVIDIIVAAVLMAMGMIMLPPVMISLPFKLILF 236
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ LVKSF+
Sbjct: 237 VMVDGWTLITSGLVKSFM 254
>gi|161520303|ref|YP_001583730.1| type III secretion system protein [Burkholderia multivorans ATCC
17616]
gi|189353518|ref|YP_001949145.1| type III secretion system protein [Burkholderia multivorans ATCC
17616]
gi|160344353|gb|ABX17438.1| Yop virulence translocation R [Burkholderia multivorans ATCC 17616]
gi|189337540|dbj|BAG46609.1| type III secretion protein SctR [Burkholderia multivorans ATCC
17616]
Length = 224
Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats.
Identities = 71/217 (32%), Positives = 122/217 (56%), Gaps = 5/217 (2%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL
Sbjct: 2 GNLPNPVALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGVQQVPPNLVLNGIALI 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTA-----IQRVAEPFWVFMRNNTREKDLSLF 148
++ ++M+P + + +TA P F+ ++TR++D F
Sbjct: 62 LSLFIMAPVGMSIRDALQARHFDASGQLSTADVGALADAALPPIKDFLVSHTRQRDREFF 121
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A S + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A
Sbjct: 122 VRTATSVWPKNRADGIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLA 181
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GM M+ PT+IS+PFK++ FV +DGWSLLV LV S+
Sbjct: 182 LGMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218
>gi|294339800|emb|CAZ88163.1| Flagellar biosynthetic protein FliP [Thiomonas sp. 3As]
Length = 255
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 93/218 (42%), Positives = 145/218 (66%), Gaps = 4/218 (1%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+ + V+T T L P +L+M+T F R IIV S+L+ +G +VPP+ VI+
Sbjct: 41 AAGGGTEYSLSVQTLLFMTALVFLPAMLLMMTAFTRIIIVLSLLKQALGTTTVPPSQVIV 100
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
L+LF+TF+VMSP L++ ++ I+PLM+NQIT A+Q A P FM TR++DL+LF
Sbjct: 101 GLSLFLTFFVMSPVLNQVNDVAIKPLMDNQITMQQALQMGAAPLRTFMLGQTRQEDLALF 160
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ ++ + K +L+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA ++M+
Sbjct: 161 VKLSGH----KALDKPADTPMSLLVPAFVTSELKTAFQIGFVIFIPFLIIDMVVAAVLMS 216
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MGMMML P ++S P K++ FVL+ GW L++ +L++SFI
Sbjct: 217 MGMMMLSPVTVSFPLKLMLFVLVGGWELVIGSLMQSFI 254
>gi|304412524|ref|ZP_07394130.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183]
gi|307307183|ref|ZP_07586921.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175]
gi|304349166|gb|EFM13578.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183]
gi|306910422|gb|EFN40853.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175]
Length = 244
Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 86/245 (35%), Positives = 143/245 (58%), Gaps = 3/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++R ++ L+ P+ + ++ ++ D + + T +S PI+L+M+T
Sbjct: 2 IVRVLLLSILLLAPQALASEGLTLFTLDSAQDSQAVNIKLEILALMTAISFLPIMLMMLT 61
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +ILR +G+ PPN V++ +AL +T ++M P D+ + P +I
Sbjct: 62 SFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPVGDKIYKEAYLPYDQGKIE 121
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ P FM TR DL + +A+ T + + + + +L+P+F++SE
Sbjct: 122 LMEAVSIAKVPLTRFMLAQTRATDLEQMLKIANEP---THMKTAEEVPFFVLMPAFVLSE 178
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGWS+ V
Sbjct: 179 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 238
Query: 241 LVKSF 245
L SF
Sbjct: 239 LTASF 243
>gi|5679188|gb|AAD46902.1|AF160974_5 HrcR homolog [Xanthomonas campestris pv. glycines]
Length = 201
Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 65/200 (32%), Positives = 114/200 (57%), Gaps = 2/200 (1%)
Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
+L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P +
Sbjct: 1 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60
Query: 108 EMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
+ Q + EPF F+ +TRE++ + FM A
Sbjct: 61 KAAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLK 120
Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
+ +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PFK+
Sbjct: 121 SDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKL 180
Query: 226 IFFVLIDGWSLLVENLVKSF 245
+ FV +DGWS+L+ LV S+
Sbjct: 181 LLFVAMDGWSMLIHGLVLSY 200
>gi|216264896|ref|ZP_03436888.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 156a]
gi|221217753|ref|ZP_03589221.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 72a]
gi|223888889|ref|ZP_03623480.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 64b]
gi|224533771|ref|ZP_03674359.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi CA-11.2a]
gi|225549012|ref|ZP_03769987.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 94a]
gi|225550173|ref|ZP_03771133.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 118a]
gi|215981369|gb|EEC22176.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 156a]
gi|221192430|gb|EEE18649.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 72a]
gi|223885705|gb|EEF56804.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 64b]
gi|224513064|gb|EEF83427.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi CA-11.2a]
gi|225369285|gb|EEG98738.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 118a]
gi|225370238|gb|EEG99676.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 94a]
gi|312148186|gb|ADQ30845.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi JD1]
Length = 254
Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
M + F LF L FA++ N S + ++ + TI+++
Sbjct: 1 MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PP +++ LALF+T + M PT + E
Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
PL ++I + P +FM R +++ LFM M++ +
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPR----NFSEVP 176
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254
>gi|325109027|ref|YP_004270095.1| flagellar biosynthetic protein FliP [Planctomyces brasiliensis DSM
5305]
gi|324969295|gb|ADY60073.1| flagellar biosynthetic protein FliP [Planctomyces brasiliensis DSM
5305]
Length = 340
Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 18/211 (8%)
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
AP L+IM TCF R I+V +LR +G +PPN V++SL+LFMT +M P S G+
Sbjct: 108 APSLVIMTTCFVRMIVVLGLLRQALGTQQLPPNQVLVSLSLFMTIMIMWPVWQESYRAGV 167
Query: 112 QPLM--------NNQITETTAIQRVAEPFWVFMRNNTREK----------DLSLFMDMAH 153
QP + + A++R EP FM + D +
Sbjct: 168 QPYSSSTYETTADQEEGLQLALERSLEPIRNFMSDQIYRTGNENAVWMFIDYQKPAEGTA 227
Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
++ T+ + +LIP+FM+SEL+ +F IGF I LPF+IIDM++A+I+++MGMMM
Sbjct: 228 AAETWTEPQSFADVPTTVLIPAFMMSELKTAFVIGFQIYLPFIIIDMVIASILISMGMMM 287
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
LPP ISLPFK++ FVL+DGW L VE L++S
Sbjct: 288 LPPVLISLPFKLLLFVLVDGWYLTVEMLLQS 318
>gi|85710189|ref|ZP_01041254.1| Flagellar transport protein FliP [Erythrobacter sp. NAP1]
gi|85688899|gb|EAQ28903.1| Flagellar transport protein FliP [Erythrobacter sp. NAP1]
Length = 243
Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 90/218 (41%), Positives = 141/218 (64%), Gaps = 4/218 (1%)
Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
+ + + ++ ++ + ++L+I P +++M+T F R +IV SILR +G+ PP V+
Sbjct: 29 DGTGEDTPLSFSIQLLLVISLLTILPAIVLMMTSFLRILIVLSILRQALGLQGSPPTQVL 88
Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
+ L+LF++ +VM+PTLD E+ I+P I AI E F FM TRE +L +
Sbjct: 89 VGLSLFLSLFVMAPTLDTVSELAIEPYSAGTIGADAAIASAGEAFHTFMLRQTREANLVM 148
Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
F D+A D I + IL+P+F+ SEL +F+IGF++ LPFL+ID++VA+++M
Sbjct: 149 FADIAGIG----AFADADAIPFSILLPAFVTSELETAFQIGFMLFLPFLVIDLVVASVLM 204
Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++GMMML PT ISLPFK++ FVL+DGWSLL+ +L SF
Sbjct: 205 SLGMMMLSPTIISLPFKLLLFVLVDGWSLLMGSLAMSF 242
>gi|46398252|gb|AAS91806.1| AcrR [Aeromonas hydrophila]
Length = 217
Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 120/208 (57%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM
Sbjct: 8 LNLIVGLALLALLPFIAVMATSFVKMAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVM 67
Query: 100 SPTL--DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + + + + + P+ F++ + ++ + F+D
Sbjct: 68 APVGFATQDYLRQNEVSLAKSESVEKFLDEGIAPYRAFLKKQIKPREHAFFIDSTKQLWP 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + + IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P
Sbjct: 128 SKYADRLEPDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPM 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ISLPFK++ FVL+DGW+ L LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWARLTHGLVISY 215
>gi|221200568|ref|ZP_03573610.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia multivorans CGD2M]
gi|221209245|ref|ZP_03582235.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia multivorans CGD2]
gi|221170901|gb|EEE03358.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia multivorans CGD2]
gi|221179909|gb|EEE12314.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia multivorans CGD2M]
Length = 224
Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/217 (32%), Positives = 122/217 (56%), Gaps = 5/217 (2%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL
Sbjct: 2 GNLPNPVALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALI 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTA-----IQRVAEPFWVFMRNNTREKDLSLF 148
++ ++M+P + + +TA P F+ ++TR++D F
Sbjct: 62 LSLFIMAPVGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFF 121
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A S + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A
Sbjct: 122 VRTATSVWPKNRADDIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLA 181
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GM M+ PT+IS+PFK++ FV +DGWSLLV LV S+
Sbjct: 182 LGMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218
>gi|219684692|ref|ZP_03539635.1| flagellar biosynthetic protein FliP [Borrelia garinii PBr]
gi|219685749|ref|ZP_03540560.1| flagellar biosynthetic protein FliP [Borrelia garinii Far04]
gi|219672054|gb|EED29108.1| flagellar biosynthetic protein FliP [Borrelia garinii PBr]
gi|219672688|gb|EED29716.1| flagellar biosynthetic protein FliP [Borrelia garinii Far04]
Length = 254
Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 80/258 (31%), Positives = 138/258 (53%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA---------DLSISTWIVRTFGIFTILSI 51
M + F LF L FA++ S + ++ + TI+++
Sbjct: 1 MRKCFNFFLFFSITSLSFAQTKSLQATKGLNFPFSNFENIGGSEIAFSLQLLILLTIITL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PP +++ LALF+T + M PT + +
Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
PL ++I + P +FM R +++ LFM +++ +
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISNYDRPK----NFSEVP 176
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254
>gi|262284525|gb|ACY41062.1| VscR [Vibrio alginolyticus]
Length = 216
Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/208 (34%), Positives = 126/208 (60%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M
Sbjct: 8 LNLIVSLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67
Query: 100 SPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + + Q + + + I+ +P+ F++ + RE ++ F D A +
Sbjct: 68 APVGFETYDYVKQHDISLEDSASVEGLIESGLQPYREFLKKHIRETEVIFFTDAARTLWP 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P
Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ISLPFK++ FVL+DGW+ L LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215
>gi|153832450|ref|ZP_01985117.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
harveyi HY01]
gi|156974015|ref|YP_001444922.1| type III secretion system protein [Vibrio harveyi ATCC BAA-1116]
gi|41834184|gb|AAS13322.1| VscR [Vibrio harveyi]
gi|148871245|gb|EDL70117.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
harveyi HY01]
gi|156525609|gb|ABU70695.1| hypothetical protein VIBHAR_01726 [Vibrio harveyi ATCC BAA-1116]
Length = 216
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/208 (34%), Positives = 125/208 (60%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M
Sbjct: 8 LNLIVTLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67
Query: 100 SPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + + Q + + + I+ +P+ F++ + RE + F D A +
Sbjct: 68 APVGFETYDYVTQHEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWP 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P
Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ISLPFK++ FVL+DGW+ L LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215
>gi|304321125|ref|YP_003854768.1| flagellar biosynthetic protein FliP [Parvularcula bermudensis
HTCC2503]
gi|303300027|gb|ADM09626.1| flagellar biosynthetic protein FliP [Parvularcula bermudensis
HTCC2503]
Length = 246
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 87/245 (35%), Positives = 139/245 (56%), Gaps = 3/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ A L+ V ++ S+ I+ T+LS+AP +L+M+T
Sbjct: 3 LVSLIIIAGALLLSPAVAQEAPSFVEGLPDMGGSLRGDIIPLLLTVTVLSLAPGILMMIT 62
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
C P +IVFS LR +G+ PP+++I++LALF+TF+VM P ++ E GI P +I
Sbjct: 63 CLPLMVIVFSFLRQALGIPQSPPSMMIMALALFLTFFVMEPVFQQAWEAGIAPYQEGEID 122
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
E TA + PF VFM + ++ + + + +L+PSFM+SE
Sbjct: 123 EQTAFREAIAPFRVFMEARVHDSTIAALSESLPERWDE---DVMETVPLSLLVPSFMLSE 179
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
++ +F+IGF + LPFL ID++ A ++MAMGMMM+PP +SLPFK+ FFV+ DGW+ L
Sbjct: 180 IKTAFQIGFAVFLPFLAIDLVTAAVLMAMGMMMVPPAVVSLPFKLAFFVMADGWTKLSAA 239
Query: 241 LVKSF 245
L++ +
Sbjct: 240 LLRGY 244
>gi|216264092|ref|ZP_03436086.1| flagellar biosynthetic protein FliP [Borrelia afzelii ACA-1]
gi|215980136|gb|EEC20958.1| flagellar biosynthetic protein FliP [Borrelia afzelii ACA-1]
Length = 254
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 80/258 (31%), Positives = 138/258 (53%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA---------DLSISTWIVRTFGIFTILSI 51
M + F LF + FA++ N S + ++ + TI+++
Sbjct: 1 MRKCFNFFLFFGVTSVSFAQTKSLQATNGLNFPFLNFENIGGSEIAFSLQLLILLTIITL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PP +++ LALF+T + M PT + +
Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
PL ++I + P +FM R +++ LFM ++ +
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISSYDRPK----NFSEVP 176
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254
>gi|146309436|ref|YP_001189901.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina ymp]
gi|145577637|gb|ABP87169.1| flagellar biosynthetic protein FliP [Pseudomonas mendocina ymp]
Length = 250
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 82/228 (35%), Positives = 125/228 (54%), Gaps = 4/228 (1%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
N D + ++ I T+L P +L+M+TCF RFIIV +ILR +
Sbjct: 23 AAGGDITLFNFNDSEDGQTLSVKLQILLIMTLLGFLPAMLMMMTCFTRFIIVLAILRQAI 82
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G+ PPN V+I +AL +T VM P P +QI+ + FM
Sbjct: 83 GLQQSPPNPVLIGIALCLTLLVMRPVWQEMYTEAYVPFEADQISLEQGLGEGKRIISQFM 142
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
T + L + +A +++ +L+P+F++SEL+ +F++GF+I +PFL
Sbjct: 143 LAQTSKNSLETLVALAGEELPEDLAQ----LDFSLLLPAFVLSELKTAFQLGFMIFVPFL 198
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
+ID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+LLV L S
Sbjct: 199 VIDLVVASVLMAMGMMMLSPMMISLPFKLLVFVLVDGWTLLVGTLTSS 246
>gi|325519943|gb|EGC99198.1| type III secretion system protein YscR [Burkholderia sp. TJI49]
Length = 224
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/217 (32%), Positives = 122/217 (56%), Gaps = 5/217 (2%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL
Sbjct: 2 GNLPNPVALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALI 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTA-----IQRVAEPFWVFMRNNTREKDLSLF 148
++ ++M+P + + +TA P F+ ++TR++D F
Sbjct: 62 LSLFIMAPVGMSIRDALQARHFDASGQLSTADVGALADAALPPIKDFLVSHTRQRDREFF 121
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A S + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A
Sbjct: 122 VRTATSVWPKNRADGIRDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLA 181
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GM M+ PT+IS+PFK++ FV +DGWSLLV LV S+
Sbjct: 182 LGMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218
>gi|332298229|ref|YP_004440151.1| flagellar biosynthetic protein FliP [Treponema brennaborense DSM
12168]
gi|332181332|gb|AEE17020.1| flagellar biosynthetic protein FliP [Treponema brennaborense DSM
12168]
Length = 277
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 130/228 (57%), Gaps = 6/228 (2%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
S+ + P + V+ + TIL++AP +LI++TCF RF IV ++ + +
Sbjct: 53 PSISVDIRSPQTGQEVAFSVQLLLLLTILTLAPSILILLTCFLRFSIVLDFIKRALSLQQ 112
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN- 139
VPP V+ +A FMT ++M PT + +PL + +I A P +FM
Sbjct: 113 VPPTAVLNGIAFFMTLFIMWPTFTDIYDNSFKPLSDGEIGIEAAFTEAEAPLRIFMFKQM 172
Query: 140 -TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
T ++LFM M T + +LIP+++++EL +F+IG L+ +PF++I
Sbjct: 173 GTNTDYITLFMSMGGLDRPQT----LADVPSHVLIPAYILNELTVAFKIGVLLYIPFIVI 228
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
DM+VA+++M+MGM+MLPP IS+PFK++ FVLIDGW LL + L S +
Sbjct: 229 DMVVASVLMSMGMIMLPPVQISMPFKLMLFVLIDGWGLLTQQLFNSIV 276
>gi|45657250|ref|YP_001336.1| flagellar biosynthesis protein FliP [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45600488|gb|AAS69973.1| flagellar protein export system [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 267
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 83/243 (34%), Positives = 146/243 (60%), Gaps = 7/243 (2%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
FF L + +L+ +N ++ + + TILS+AP +++ +T F +
Sbjct: 28 FFTLEAQSAGTRIPIPNLNINVNEAKSPRETSLSLMVLFLVTILSLAPAIVMSLTSFTKI 87
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+IV +R + + ++PPN V++ LALFMTF++M+PTL+ E + P + +I
Sbjct: 88 VIVLDFVRRALSIQNLPPNQVMMGLALFMTFFIMAPTLNTVNEKALGPYLEGKIDTNAFF 147
Query: 126 QRVAEPFWVFMRNN---TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
++ P FM + KD++LF+ + + D + +LIP+FM+SE++
Sbjct: 148 EKGMIPIREFMMRQIGTSGAKDVALFLKIGKVEK----VESFDDVPSYVLIPAFMLSEIK 203
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
++F IG +I +PF++ID++VA+ +++MG+MMLPP +SLPFK+I FVL+DGW+L+V LV
Sbjct: 204 KAFWIGIVIFIPFIVIDLVVASALLSMGLMMLPPVMVSLPFKLILFVLVDGWNLIVYELV 263
Query: 243 KSF 245
+S+
Sbjct: 264 RSY 266
>gi|269105051|ref|ZP_06157746.1| yop virulence translocation protein R [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268160686|gb|EEZ39184.1| yop virulence translocation protein R [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 216
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/208 (34%), Positives = 125/208 (60%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M
Sbjct: 8 LNLIVTLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIFIM 67
Query: 100 SPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + + Q + + + I+ +P+ F++ + RE + F D A +
Sbjct: 68 APVGFETYDYVTQHEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWP 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P
Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ISLPFK++ FVL+DGW+ L LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215
>gi|91795011|ref|YP_564662.1| flagellar biosynthesis protein FliP [Shewanella denitrificans
OS217]
gi|91717013|gb|ABE56939.1| flagellar biosynthetic protein FliP [Shewanella denitrificans
OS217]
Length = 243
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 88/245 (35%), Positives = 138/245 (56%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M+R L++P+ + A ++ + + + T LS P +L+M+T
Sbjct: 2 MLRAFILGWLLLSPQALGADGFTLLTLDSGQESQAVNIKLEILALMTALSFLPAMLMMLT 61
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R ++V +ILR +G+ PPN V+I +AL +T ++M P D + P +I
Sbjct: 62 SFTRIVVVLAILRQALGLQQSPPNKVLIGIALVLTLFIMRPVGDSIYKEAYLPYDQGKIE 121
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
AI P FM TRE DL + +A+ T I + +L+P+F++SE
Sbjct: 122 LMAAIDIAKVPLSQFMLAQTRETDLEQMLKIANEPIDLTPA----EIPFLVLMPAFVLSE 177
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGW++ V
Sbjct: 178 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMIFVLVDGWAMTVST 237
Query: 241 LVKSF 245
L SF
Sbjct: 238 LTASF 242
>gi|28898446|ref|NP_798051.1| type III secretion system protein [Vibrio parahaemolyticus RIMD
2210633]
gi|91224470|ref|ZP_01259732.1| translocation protein in type III secretion [Vibrio alginolyticus
12G01]
gi|153836136|ref|ZP_01988803.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
parahaemolyticus AQ3810]
gi|254228243|ref|ZP_04921672.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio sp.
Ex25]
gi|260365110|ref|ZP_05777681.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
parahaemolyticus K5030]
gi|260876607|ref|ZP_05888962.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
parahaemolyticus AN-5034]
gi|260895032|ref|ZP_05903528.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
parahaemolyticus Peru-466]
gi|260900957|ref|ZP_05909352.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
parahaemolyticus AQ4037]
gi|262394133|ref|YP_003285987.1| yop virulence translocation protein R [Vibrio sp. Ex25]
gi|269967239|ref|ZP_06181303.1| translocation protein in type III secretion [Vibrio alginolyticus
40B]
gi|28806663|dbj|BAC59935.1| translocation protein in type III secretion [Vibrio
parahaemolyticus RIMD 2210633]
gi|91190812|gb|EAS77079.1| translocation protein in type III secretion [Vibrio alginolyticus
12G01]
gi|149750411|gb|EDM61156.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
parahaemolyticus AQ3810]
gi|151939316|gb|EDN58145.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio sp.
Ex25]
gi|262337727|gb|ACY51522.1| yop virulence translocation protein R [Vibrio sp. Ex25]
gi|269828095|gb|EEZ82365.1| translocation protein in type III secretion [Vibrio alginolyticus
40B]
gi|308085950|gb|EFO35645.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
parahaemolyticus Peru-466]
gi|308093573|gb|EFO43268.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
parahaemolyticus AN-5034]
gi|308110848|gb|EFO48388.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
parahaemolyticus AQ4037]
gi|308111579|gb|EFO49119.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
parahaemolyticus K5030]
gi|328468941|gb|EGF39901.1| type III secretion system protein YscR [Vibrio parahaemolyticus
10329]
Length = 216
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/208 (34%), Positives = 125/208 (60%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M
Sbjct: 8 LNLIVSLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67
Query: 100 SPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + + Q + + + I+ +P+ F++ + RE + F D A +
Sbjct: 68 APVGFETYDYVKQHDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWP 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P
Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ISLPFK++ FVL+DGW+ L LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215
>gi|308050042|ref|YP_003913608.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799]
gi|307632232|gb|ADN76534.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799]
Length = 243
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 86/244 (35%), Positives = 136/244 (55%), Gaps = 4/244 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+R L L++P + M A + + T LS P +L+M+T
Sbjct: 1 MRVWLVFLLLLSPSALAEGGLTLFTMTDGASSQEFGVKMEILALMTALSFLPAMLLMMTS 60
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+V ++LR +G+ PPN ++I +AL +T ++M P E P N ++T
Sbjct: 61 FTRIIVVLAVLRQALGLQQSPPNKLLIGIALVLTLFIMRPVWTEIHEQAFLPYDNGELTL 120
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ P FM TRE DL + +A + + + + +L+P+F++SEL
Sbjct: 121 KQAVAVAEVPLRTFMLGQTRETDLEQMLKIAG----ESTQLSAEEVPFSVLMPAFVLSEL 176
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F+IGFL+ +PFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGWS+ V L
Sbjct: 177 KTAFQIGFLLFIPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVGTL 236
Query: 242 VKSF 245
SF
Sbjct: 237 AASF 240
>gi|51598535|ref|YP_072723.1| flagellar biosynthesis protein FliP [Borrelia garinii PBi]
gi|51573106|gb|AAU07131.1| flagellar biosynthesis protein [Borrelia garinii PBi]
Length = 254
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 80/258 (31%), Positives = 140/258 (54%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKS---------SLHDVMNIPADLSISTWIVRTFGIFTILSI 51
M + F LF L FA++ + + S + ++ + TI+++
Sbjct: 1 MRKCFNFFLFFSVTSLSFAQTKSLQAAKGLNFPFLNFENIGGSEIAFSLQLLILLTIITL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PP +++ LALF+T + M PT + +
Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
PL ++I + P +FM R +++ LFM +++ +
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISNYDRPK----NFSEVP 176
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254
>gi|58579704|ref|YP_198720.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58424298|gb|AAW73335.1| hrpD2 [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 226
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 65/205 (31%), Positives = 116/205 (56%), Gaps = 1/205 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P
Sbjct: 21 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 80
Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
+ + + + + EPF F+ +T E++ + FM A
Sbjct: 81 VGMEAFKAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDK 140
Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
T + IL P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT+++
Sbjct: 141 ATTLKSDDLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 200
Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
+PFK++ FV +DGWS+L+ LV S+
Sbjct: 201 IPFKLLLFVAMDGWSMLIHGLVLSY 225
>gi|89895724|ref|YP_519211.1| flagellar biosynthesis protein FliP [Desulfitobacterium hafniense
Y51]
gi|89335172|dbj|BAE84767.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 236
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 98/225 (43%), Positives = 149/225 (66%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
++ + ++ ++ + T+LSIAP +L+++T F R IIV S +R +G
Sbjct: 15 AAGLTLDFGTTTAEQTSSTLQILLLLTVLSIAPAILVLMTSFTRTIIVLSFVRNALGTQQ 74
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN V+I L+LF+TF+VM+PT + +QP M NQIT+ A+Q+ P FM T
Sbjct: 75 LPPNQVLIGLSLFLTFFVMAPTWNEINTQALQPYMQNQITQAEALQQAEAPLRQFMFEQT 134
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
REKDL+LF+ +A T I +LIP+F+ISEL+ +F++GF I +PF++IDM
Sbjct: 135 REKDLTLFVGLARMEQPQTY----GDIPTYVLIPAFVISELKTAFQMGFAIFIPFMVIDM 190
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMMLPP +SLPFK++ FVL+DGW L+V++LV SF
Sbjct: 191 LVASVLMSMGMMMLPPMMVSLPFKILLFVLVDGWHLVVQSLVTSF 235
>gi|221209604|ref|ZP_03582585.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia multivorans CGD1]
gi|221170292|gb|EEE02758.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia multivorans CGD1]
Length = 224
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/217 (32%), Positives = 122/217 (56%), Gaps = 5/217 (2%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL
Sbjct: 2 GNLPNPVALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALI 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTA-----IQRVAEPFWVFMRNNTREKDLSLF 148
++ ++M+P + + +TA P F+ ++TR++D F
Sbjct: 62 LSLFIMAPVGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFF 121
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A S + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A
Sbjct: 122 VRTATSVWPKNRADAIRDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLA 181
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GM M+ PT+IS+PFK++ FV +DGWSLLV LV S+
Sbjct: 182 LGMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218
>gi|289548901|ref|YP_003473889.1| flagellar biosynthetic protein FliP [Thermocrinis albus DSM 14484]
gi|289182518|gb|ADC89762.1| flagellar biosynthetic protein FliP [Thermocrinis albus DSM 14484]
Length = 236
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 92/229 (40%), Positives = 146/229 (63%), Gaps = 6/229 (2%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
FA+ + + +R + T+LS+AP +LIM T F R +IV S+LR +
Sbjct: 13 AFAQQGPGIELKVSTG--SWDNSIRILLLLTVLSLAPSILIMTTAFVRIVIVLSLLRQAI 70
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G+ +VPPN VI+SLA+F+TF+VM PT D+ + +QPL+N QIT+ ++R + FM
Sbjct: 71 GVPTVPPNQVIVSLAMFLTFFVMKPTWDKINQQALQPLLNKQITDVEFLERTSSIMKEFM 130
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
NT+ + L F+ + + +LIP+FM+SE+ +F+I FL+ LPFL
Sbjct: 131 LRNTKRETLQAFLKASTVQRGEE----VRDVPMHVLIPAFMVSEISVAFQIVFLLYLPFL 186
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I+DM+VA+I+++MG++M+PP ISLPFK++ FVL +GW L++ +LV+S+
Sbjct: 187 IVDMVVASILISMGVLMVPPQIISLPFKLMLFVLANGWELVILSLVRSY 235
>gi|225552062|ref|ZP_03773002.1| flagellar biosynthetic protein FliP [Borrelia sp. SV1]
gi|225371060|gb|EEH00490.1| flagellar biosynthetic protein FliP [Borrelia sp. SV1]
Length = 254
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
M + F LF L FA++ N S + ++ + TI+++
Sbjct: 1 MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PP +++ LALF+T + M PT + E
Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSMYEQAY 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
PL ++I + P +FM R +++ LFM M++ +
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPK----NFSEVP 176
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254
>gi|182412233|ref|YP_001817299.1| flagellar biosynthetic protein FliP [Opitutus terrae PB90-1]
gi|177839447|gb|ACB73699.1| flagellar biosynthetic protein FliP [Opitutus terrae PB90-1]
Length = 302
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 87/224 (38%), Positives = 142/224 (63%), Gaps = 5/224 (2%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
L + + V+ + T+LS+AP +++++T F R +IV +RT +G S P
Sbjct: 83 LSIGLEGTNQQGQVSVAVQIVLVMTLLSVAPSIVLLMTTFTRLVIVLGFVRTALGTPSAP 142
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
N ++I LALF+TF++M P DR + ++P ++ QIT T A+ P FM TR
Sbjct: 143 SNQIVIGLALFLTFFLMGPVFDRVNQEALRPYLDGQITATQALDHATVPLKEFMLKQTRT 202
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
+D+ F+ + T + R++IP+F+ISEL+ +F++GFL+ LPFL+ID +V
Sbjct: 203 RDIEYFLQLGGFGP-----TAVKDLPIRVVIPAFVISELQTAFQMGFLLFLPFLVIDFLV 257
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
A+++MAMGMMM+PP +++LP K++ FVL+DGW L+V +LV+SF+
Sbjct: 258 ASVLMAMGMMMMPPVTVALPLKLLLFVLVDGWHLVVRSLVQSFV 301
>gi|107101125|ref|ZP_01365043.1| hypothetical protein PaerPA_01002157 [Pseudomonas aeruginosa PACS2]
Length = 217
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/196 (36%), Positives = 117/196 (59%), Gaps = 2/196 (1%)
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS--IEM 109
P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P +
Sbjct: 20 VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR 79
Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
+N+ + + P+ F++ +E++ + FM+ + + D
Sbjct: 80 NHDVSLNDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL 139
Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV
Sbjct: 140 LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199
Query: 230 LIDGWSLLVENLVKSF 245
L+DGW+ L LV S+
Sbjct: 200 LLDGWARLTHGLVISY 215
>gi|296389923|ref|ZP_06879398.1| type III secretion system protein [Pseudomonas aeruginosa PAb1]
Length = 219
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 70/196 (35%), Positives = 117/196 (59%), Gaps = 2/196 (1%)
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS--IEM 109
P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P +
Sbjct: 20 VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR 79
Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
+++ + + P+ F++ +E++ + FM+ + + D
Sbjct: 80 NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL 139
Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV
Sbjct: 140 LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199
Query: 230 LIDGWSLLVENLVKSF 245
L+DGW+ L LV S+
Sbjct: 200 LLDGWARLTHGLVISY 215
>gi|239815267|ref|YP_002944177.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110]
gi|239801844|gb|ACS18911.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110]
Length = 326
Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 91/206 (44%), Positives = 136/206 (66%), Gaps = 4/206 (1%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+R T+L+I P LL+ +T F R I+V S+LR +GM PPN V+I LALF+T + M
Sbjct: 124 LRVVLGLTVLAILPALLVCLTSFLRIIVVLSMLRHAIGMNETPPNTVLIGLALFLTLFTM 183
Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
SP L + + +P M +++ + P FM TRE DL+L ++++ +
Sbjct: 184 SPVLQKVNQDAFEPFMAGKLSMQDGYGKGIAPLREFMVRQTREADLALMVELSKAPTPK- 242
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ I LIPSFM+SELR +F+IGF+I LPFL+ID+IV++I+MA+GMMM+PPT+I
Sbjct: 243 ---SMEDISNVQLIPSFMLSELRAAFQIGFVIFLPFLLIDLIVSSILMALGMMMMPPTTI 299
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
+LP K++ F+L+DGWSL+++ LV SF
Sbjct: 300 ALPLKILMFILVDGWSLVLKALVGSF 325
>gi|167590548|ref|ZP_02382936.1| Yop virulence translocation R [Burkholderia ubonensis Bu]
Length = 222
Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 70/217 (32%), Positives = 123/217 (56%), Gaps = 5/217 (2%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL
Sbjct: 2 GSLPNPVALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALI 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTA-----IQRVAEPFWVFMRNNTREKDLSLF 148
++ ++M+P + Q + +TA P F+ ++TR++D F
Sbjct: 62 LSLFIMAPVGMSIRDALQQRHFDASGQLSTADVGALADAALPPIKDFLVSHTRQRDREFF 121
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A S + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A
Sbjct: 122 VRTATSVWPKNRAEGVKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLA 181
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GM M+ PT+IS+PFK++ FV +DGW++LV LV S+
Sbjct: 182 LGMQMISPTTISVPFKLLLFVALDGWAMLVHGLVLSY 218
>gi|134294005|ref|YP_001117741.1| type III secretion system protein [Burkholderia vietnamiensis G4]
gi|134137162|gb|ABO58276.1| Yop virulence translocation R [Burkholderia vietnamiensis G4]
Length = 224
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 71/217 (32%), Positives = 122/217 (56%), Gaps = 5/217 (2%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL
Sbjct: 2 GNLPNPVALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALI 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTA-----IQRVAEPFWVFMRNNTREKDLSLF 148
++ ++M+P + + +TA P F+ ++TR++D F
Sbjct: 62 LSLFIMAPVGMSIRDALQARHFDAAGQLSTADIGVLADAALPPIKDFLVSHTRQRDREFF 121
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A S + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A
Sbjct: 122 VRTATSVWPKNRADGIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLA 181
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GM M+ PT+IS+PFK++ FV +DGWSLLV LV S+
Sbjct: 182 LGMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218
>gi|49078404|gb|AAT49781.1| PA1693 [synthetic construct]
Length = 218
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 70/196 (35%), Positives = 117/196 (59%), Gaps = 2/196 (1%)
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS--IEM 109
P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P +
Sbjct: 20 VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR 79
Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
+++ + + P+ F++ +E++ + FM+ + + D
Sbjct: 80 NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL 139
Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV
Sbjct: 140 LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199
Query: 230 LIDGWSLLVENLVKSF 245
L+DGW+ L LV S+
Sbjct: 200 LLDGWARLTHGLVISY 215
>gi|107025882|ref|YP_623393.1| type III secretion system protein [Burkholderia cenocepacia AU
1054]
gi|116692934|ref|YP_838467.1| type III secretion system protein [Burkholderia cenocepacia HI2424]
gi|170737801|ref|YP_001779061.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3]
gi|206563883|ref|YP_002234646.1| type III secretion system protein [Burkholderia cenocepacia J2315]
gi|254250206|ref|ZP_04943526.1| Yop virulence translocation protein R [Burkholderia cenocepacia
PC184]
gi|18092662|gb|AAK50140.1| BcscR [Burkholderia cenocepacia]
gi|105895256|gb|ABF78420.1| Yop virulence translocation R [Burkholderia cenocepacia AU 1054]
gi|116650934|gb|ABK11574.1| Yop virulence translocation R [Burkholderia cenocepacia HI2424]
gi|124876707|gb|EAY66697.1| Yop virulence translocation protein R [Burkholderia cenocepacia
PC184]
gi|169819989|gb|ACA94571.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3]
gi|198039923|emb|CAR55900.1| type III secretion system protein [Burkholderia cenocepacia J2315]
Length = 224
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 70/217 (32%), Positives = 122/217 (56%), Gaps = 5/217 (2%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL
Sbjct: 2 GNLPNPVALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALI 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTA-----IQRVAEPFWVFMRNNTREKDLSLF 148
++ ++M+P + + +T+ P F+ ++TR++D F
Sbjct: 62 LSLFIMAPVGMSIRDALQARHFDASGQLSTSDIGALADAALPPIKDFLVSHTRQRDREFF 121
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A S + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A
Sbjct: 122 VRTATSVWPKNRADGIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLA 181
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GM M+ PT+IS+PFK++ FV +DGWSLLV LV S+
Sbjct: 182 LGMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218
>gi|83647782|ref|YP_436217.1| type III secretion system protein [Hahella chejuensis KCTC 2396]
gi|83635825|gb|ABC31792.1| Type III secretory pathway, component EscR [Hahella chejuensis KCTC
2396]
Length = 215
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 74/210 (35%), Positives = 122/210 (58%), Gaps = 2/210 (0%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
+ G +LS+ P + IM T F + +VFS+LR +G+ +PPN+ + LA+ ++ Y
Sbjct: 5 QAIPLIGTLVLLSLIPFIAIMTTSFIKLAVVFSLLRNALGIQQIPPNMALYGLAIVLSIY 64
Query: 98 VMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
+M+P + + + + + +P F+ ++ EK+ F++ A +
Sbjct: 65 IMAPVGYQIADTVKEKGFDLSQSESLKELANSAIDPMSEFLTKHSSEKERGFFLESAETL 124
Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
+ D +L+PSF ISEL+ +FEIGFL+ LPF+ ID+IV+ I++AMGMMM+
Sbjct: 125 WPKEYAARLDTNSMLVLVPSFTISELKSAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVS 184
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
P +ISLPFK++ FVL+DGW+ L LV S+
Sbjct: 185 PMTISLPFKLLLFVLLDGWTRLTHGLVLSY 214
>gi|115358964|ref|YP_776102.1| type III secretion system protein [Burkholderia ambifaria AMMD]
gi|170704157|ref|ZP_02894758.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
gi|171323089|ref|ZP_02911721.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
gi|172063756|ref|YP_001811407.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6]
gi|115284252|gb|ABI89768.1| Yop virulence translocation R [Burkholderia ambifaria AMMD]
gi|170130935|gb|EDS99661.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
gi|171091518|gb|EDT37148.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
gi|171996273|gb|ACB67191.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6]
Length = 224
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 70/217 (32%), Positives = 122/217 (56%), Gaps = 5/217 (2%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL
Sbjct: 2 GNLPNPVALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALI 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTA-----IQRVAEPFWVFMRNNTREKDLSLF 148
++ ++M+P + + +T+ P F+ ++TR++D F
Sbjct: 62 LSLFIMAPVGMSIRDALQSRHFDASGQLSTSDIGVLADAALPPIKDFLVSHTRQRDREFF 121
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A S + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A
Sbjct: 122 VRTATSVWPKNRADGIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLA 181
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GM M+ PT+IS+PFK++ FV +DGWSLLV LV S+
Sbjct: 182 LGMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218
>gi|1346805|sp|P37828|PRO2_XANCG RecName: Full=Pathogenicity-related ORF2
gi|901847|gb|AAA69968.1| pathogenicity protein [Xanthomonas campestris]
Length = 216
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 65/206 (31%), Positives = 115/206 (55%), Gaps = 2/206 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P
Sbjct: 10 LLVVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 69
Query: 102 TLDRSIEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + Q + EPF F+ +TRE++ + FM A
Sbjct: 70 VGMEAFKAAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKD 129
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++
Sbjct: 130 KAATLKSDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNV 189
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
++PFK++ FV +DGWS+L+ LV S+
Sbjct: 190 AIPFKLLLFVAMDGWSMLIHGLVLSY 215
>gi|225569962|ref|ZP_03778987.1| hypothetical protein CLOHYLEM_06057 [Clostridium hylemonae DSM
15053]
gi|225161432|gb|EEG74051.1| hypothetical protein CLOHYLEM_06057 [Clostridium hylemonae DSM
15053]
Length = 220
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 78/213 (36%), Positives = 129/213 (60%), Gaps = 4/213 (1%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
+ + T++ + P +++M+T F R II+ S R +G+ PPN+V++ +AL
Sbjct: 10 NGGQVPTLEILVMMTVVMLLPSIVVMMTSFVRIIIILSFTRNAIGVQQTPPNMVLVGIAL 69
Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
F+T ++M P + +P N +I + A+ R P FM T L+L++DMA
Sbjct: 70 FLTLFIMDPVIKDINTEAYEPYKNGEIAQEEALDRATVPMKKFMLKQTEVSTLNLYVDMA 129
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ T + + R++IPSFM SEL+R F G L+ +PFL+ID+IV++ +M+MGM+
Sbjct: 130 GIE----EKTAPEDLPMRVVIPSFMTSELKRGFMAGLLLFIPFLLIDIIVSSTLMSMGMI 185
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MLPP +I+LPFK++ FV ++GW LL ++V+SF
Sbjct: 186 MLPPATIALPFKLLLFVTLNGWELLFSSIVQSF 218
>gi|322432985|ref|YP_004210234.1| flagellar biosynthetic protein FliP [Acidobacterium sp. MP5ACTX9]
gi|321165212|gb|ADW70916.1| flagellar biosynthetic protein FliP [Acidobacterium sp. MP5ACTX9]
Length = 236
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 76/215 (35%), Positives = 130/215 (60%), Gaps = 4/215 (1%)
Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
L ++ + T LS+ P LL+ +T F R +IVF LR +G+ + P N +I L
Sbjct: 25 TGLGGASAPWTIVVLLTFLSLIPSLLLCITPFARLLIVFHFLRQALGLQTTPSNQTLIGL 84
Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
++ MTF++M P + + PL IT A++R P FM + R+KD++LF++
Sbjct: 85 SMIMTFFLMQPVGAVIYDTAVTPLQAGTITPLQALERAGTPMRQFMAHYVRDKDVALFLE 144
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
+A + +R+++P++++SEL+ F+IG ++ LPFL++DM+VA+I ++G
Sbjct: 145 LAKEPRP----HNVQDLSFRVMLPAYILSELKAGFQIGTVLFLPFLVVDMVVASITTSVG 200
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MM LPP IS P K++ F+++DGW LL+ +L++SF
Sbjct: 201 MMQLPPVVISTPLKLLLFLMVDGWHLLISSLMRSF 235
>gi|30524904|gb|AAP34349.1|AF499777_17 HrcR [Xanthomonas axonopodis pv. glycines]
Length = 200
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 64/199 (32%), Positives = 115/199 (57%), Gaps = 1/199 (0%)
Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
+L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P +
Sbjct: 1 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60
Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
+ + + + EPF F+ +TRE++ + FM A
Sbjct: 61 KAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKS 120
Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
+ +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PFK++
Sbjct: 121 DDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLL 180
Query: 227 FFVLIDGWSLLVENLVKSF 245
FV +DGWS+L+ LV S+
Sbjct: 181 LFVAMDGWSMLIHGLVLSY 199
>gi|38639349|gb|AAR25815.1| BcscR [Burkholderia multivorans E243]
Length = 224
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 71/217 (32%), Positives = 122/217 (56%), Gaps = 5/217 (2%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL
Sbjct: 2 GNLPNPVALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALI 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTA-----IQRVAEPFWVFMRNNTREKDLSLF 148
++ ++M+P + + +TA P F+ ++TR++D F
Sbjct: 62 LSLFIMAPVGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFF 121
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A S + +L+PSF ++EL ++F+IGF+I + F+++D++V I++A
Sbjct: 122 VRTATSVWPKNRADAIRDHDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVPNILLA 181
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GM M+ PT+IS+PFK++ FVL+DGWSLLV LV S+
Sbjct: 182 LGMQMISPTTISVPFKLLLFVLLDGWSLLVHGLVLSY 218
>gi|195941371|ref|ZP_03086753.1| flagellar biosynthesis protein FliP [Borrelia burgdorferi 80a]
gi|224533102|ref|ZP_03673702.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi WI91-23]
gi|224511829|gb|EEF82230.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi WI91-23]
Length = 254
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
M + F LF L FA++ N S + ++ + TI+++
Sbjct: 1 MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PP +++ LALF+T + M PT + E
Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
PL ++I + P +FM R +++ LFM M++ +
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPK----NFSEVP 176
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F
Sbjct: 177 THVLIVAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254
>gi|255022051|ref|ZP_05294057.1| Flagellar biosynthesis pathway, component FliP [Acidithiobacillus
caldus ATCC 51756]
gi|254968537|gb|EET26093.1| Flagellar biosynthesis pathway, component FliP [Acidithiobacillus
caldus ATCC 51756]
Length = 231
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 88/213 (41%), Positives = 135/213 (63%), Gaps = 3/213 (1%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
+ V+T + T+L+ P +++M+T F R IIV S+LR G+G+ ++PPN+V+I LAL
Sbjct: 18 GITYSLPVQTVILMTVLTFLPAIVLMMTGFTRIIIVLSLLRQGLGLSTMPPNIVLIGLAL 77
Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
F+TF+VM PT + PL +++ T A+ +P +FMRNNT + ++ F+ M
Sbjct: 78 FLTFFVMQPTWSSINHQALIPLEQGKVSVTRALAIAEKPLRIFMRNNTTKDSVAQFLRMD 137
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ I R+LIP+F +S+L FE+GFL+ LPFLIID++VA ++MAMGMM
Sbjct: 138 GI---KKTLRSEKDIPMRVLIPAFAVSQLESGFELGFLVYLPFLIIDLLVAAVLMAMGMM 194
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS+P K++ F L GW L+ LV+SF
Sbjct: 195 MVSPQTISIPIKLLLFALGGGWLLVTGTLVRSF 227
>gi|224534252|ref|ZP_03674830.1| flagellar biosynthetic protein FliP [Borrelia spielmanii A14S]
gi|224514354|gb|EEF84670.1| flagellar biosynthetic protein FliP [Borrelia spielmanii A14S]
Length = 254
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 81/258 (31%), Positives = 138/258 (53%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA---------DLSISTWIVRTFGIFTILSI 51
M + F LF L FA++ N S + ++ + TI+++
Sbjct: 1 MRKCFIFFLFFSVTSLSFAQTKSFQSTNGLNFPFLNFENISGSEIAFSLQLLILLTIITL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PP +++ LALF+T + M PT + +
Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
PL ++I + P +FM R +++ LFM ++ +
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISSYDRPK----NFSEVP 176
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254
>gi|218887305|ref|YP_002436626.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758259|gb|ACL09158.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 293
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 85/226 (37%), Positives = 138/226 (61%), Gaps = 4/226 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
+ + + + ++ + T+LS+AP +++ VT F R IIVF +R +G+
Sbjct: 70 PTMQLTLGAGQTEPEKVSLLLEILFMLTVLSLAPAIMLTVTSFTRIIIVFHFIRQALGVQ 129
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
+PP+ V+ SLA+FMT +M P + + +QP + +I A+ + P FM +
Sbjct: 130 QLPPSQVLASLAIFMTVVIMMPVGKQINDTALQPYLEERIGFNEALDKAQVPLRSFMFKH 189
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TREKDLS+F + T + + +L +++ISEL+ F IGFLI +PFL++D
Sbjct: 190 TREKDLSIFYAITKMEQPRTK----EEVPTVMLAAAYVISELKTGFTIGFLIYIPFLVLD 245
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+V++I++AMGMMMLPP +S+PFK++ FV++DGW+LLV +LV SF
Sbjct: 246 MVVSSILLAMGMMMLPPMMVSMPFKLLLFVMVDGWALLVGSLVNSF 291
>gi|253988529|ref|YP_003039885.1| type III secretion system protein [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211637889|emb|CAR66518.1| type iii secretion component protein sctr [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253779979|emb|CAQ83140.1| type iii secretion component protein sctr [Photorhabdus
asymbiotica]
Length = 217
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 71/208 (34%), Positives = 122/208 (58%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ +LS+ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ +T YVM
Sbjct: 8 LDLIIGLALLSLLPFIAVMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVM 67
Query: 100 SPTL--DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + + +N + ++ P+ F++ + + + + F+D
Sbjct: 68 APVGFATQDYLRQNEVSFSNAQSVEKFLEEGMAPYRNFLKQHIKSSERTFFIDSTRQIWP 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + + IL+P+F +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P
Sbjct: 128 SQYANRLEPDSLLILLPAFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPM 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ISLPFK++ FVL+DGW+ L LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTRLTHGLVISY 215
>gi|111115100|ref|YP_709718.1| flagellar biosynthesis protein FliP [Borrelia afzelii PKo]
gi|110890374|gb|ABH01542.1| flagellar biosynthesis protein [Borrelia afzelii PKo]
Length = 254
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 79/258 (30%), Positives = 137/258 (53%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA---------DLSISTWIVRTFGIFTILSI 51
M + F LF + FA++ N S + ++ + TI+++
Sbjct: 1 MRKCFNFFLFFGVTSVSFAQTKSLQATNGLNFPFLNFENIGGSEIAFSLQLLILLTIITL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PP +++ LALF+T + M PT + +
Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
PL ++I + P +FM R +++ LFM ++ +
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISSYDRPK----NFSEVP 176
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLP K+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPLKLILF 236
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254
>gi|15596890|ref|NP_250384.1| type III secretion system protein [Pseudomonas aeruginosa PAO1]
gi|116049643|ref|YP_791552.1| type III secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|254234792|ref|ZP_04928115.1| translocation protein in type III secretion [Pseudomonas aeruginosa
C3719]
gi|254240038|ref|ZP_04933360.1| translocation protein in type III secretion [Pseudomonas aeruginosa
2192]
gi|313110379|ref|ZP_07796268.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
[Pseudomonas aeruginosa 39016]
gi|9947666|gb|AAG05082.1|AE004596_8 translocation protein in type III secretion [Pseudomonas aeruginosa
PAO1]
gi|115584864|gb|ABJ10879.1| translocation protein in type III secretion [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126166723|gb|EAZ52234.1| translocation protein in type III secretion [Pseudomonas aeruginosa
C3719]
gi|126193416|gb|EAZ57479.1| translocation protein in type III secretion [Pseudomonas aeruginosa
2192]
gi|310882770|gb|EFQ41364.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
[Pseudomonas aeruginosa 39016]
Length = 217
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 70/196 (35%), Positives = 117/196 (59%), Gaps = 2/196 (1%)
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS--IEM 109
P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P +
Sbjct: 20 VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR 79
Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
+++ + + P+ F++ +E++ + FM+ + + D
Sbjct: 80 NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL 139
Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV
Sbjct: 140 LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199
Query: 230 LIDGWSLLVENLVKSF 245
L+DGW+ L LV S+
Sbjct: 200 LLDGWARLTHGLVISY 215
>gi|157373224|ref|YP_001471824.1| flagellar biosynthesis protein FliP [Shewanella sediminis HAW-EB3]
gi|157315598|gb|ABV34696.1| Triacylglycerol lipase [Shewanella sediminis HAW-EB3]
Length = 242
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M+R L+ P ++ + + T+LS P LL+M+T
Sbjct: 1 MLRALLLLFCLLAPSAFANDGFTLFTLDDGQQSQSVNIKLEILALMTVLSFLPALLMMLT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R I+V +ILR +G+ PPN V++ +AL +T +VM P + P I
Sbjct: 61 SFTRIIVVLAILRQALGLQQSPPNKVLLGIALVLTLFVMRPVGQVMYDEAYLPYDQGLIE 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ P FM TRE DL + +A D I + +L+P+F++SE
Sbjct: 121 LPEAVNIGVVPLRKFMLAQTRETDLEQMLKIADEP----VTLTADEIPFFVLMPAFVLSE 176
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGWS+ V
Sbjct: 177 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 236
Query: 241 LVKSF 245
LV SF
Sbjct: 237 LVASF 241
>gi|21230683|ref|NP_636600.1| type III secretion system protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66769322|ref|YP_244084.1| type III secretion system protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|188992474|ref|YP_001904484.1| type III secretion system protein [Xanthomonas campestris pv.
campestris str. B100]
gi|325921929|ref|ZP_08183740.1| HrcR [Xanthomonas gardneri ATCC 19865]
gi|21112271|gb|AAM40524.1| HrcR protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66574654|gb|AAY50064.1| HrcR protein [Xanthomonas campestris pv. campestris str. 8004]
gi|167734234|emb|CAP52442.1| HrcR protein [Xanthomonas campestris pv. campestris]
gi|325547631|gb|EGD18674.1| HrcR [Xanthomonas gardneri ATCC 19865]
Length = 214
Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats.
Identities = 63/205 (30%), Positives = 115/205 (56%), Gaps = 1/205 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P
Sbjct: 9 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68
Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
+ + + + EPF F+ +TRE++ + F+ A
Sbjct: 69 VGMEAFKAAQNYSPGADNSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDK 128
Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
+ +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT+++
Sbjct: 129 ADTLKPDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188
Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
+PFK++ FV +DGWS+L+ LV S+
Sbjct: 189 IPFKLLLFVALDGWSMLIHGLVLSY 213
>gi|289663757|ref|ZP_06485338.1| type III secretion system protein [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289668179|ref|ZP_06489254.1| type III secretion system protein [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 214
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 63/194 (32%), Positives = 111/194 (57%), Gaps = 1/194 (0%)
Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
P ++VT + + +V +LR +G+ VPPN+V+ +AL ++ +VM+P + +
Sbjct: 20 PFAAMVVTSYTKIAVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN 79
Query: 113 PLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
++ + EPF F+ +TRE++ + FM A + +
Sbjct: 80 YGAGSENNRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKADALKSDDLLV 139
Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PFK++ FV +
Sbjct: 140 LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM 199
Query: 232 DGWSLLVENLVKSF 245
DGWS+L+ LV S+
Sbjct: 200 DGWSMLIHGLVLSY 213
>gi|226225725|ref|YP_002759831.1| flagellar biosynthetic protein FliP [Gemmatimonas aurantiaca T-27]
gi|226088916|dbj|BAH37361.1| flagellar biosynthetic protein FliP [Gemmatimonas aurantiaca T-27]
Length = 255
Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats.
Identities = 84/228 (36%), Positives = 131/228 (57%), Gaps = 4/228 (1%)
Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
+ + + V + +L++ P L++M+T F R +IV L+ MG
Sbjct: 31 MPQMDVQLGGSGEDGGLRLNGTVGIVVMMGLLTLLPTLMLMMTGFTRILIVLQFLKQAMG 90
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
S PP ++ +AL +T +VM PTL I P ++ QIT+ ++ +P FM
Sbjct: 91 TQSAPPGALLAGMALLLTGFVMGPTLSEVNRTAITPWLDGQITQVEMMKTGVQPLRTFML 150
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
TR+ D+ F+ ++ NT D + +L+ +F+ SELR +F+IGF I LPF+I
Sbjct: 151 KQTRQSDVETFVKLSRMPQPNT----VDDVPLHVLMSAFVASELRTAFQIGFAIYLPFII 206
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
ID +VA+++M+MGM MLPP ISLPFK++ FVL+DGWSL + +LV+SF
Sbjct: 207 IDAVVASVLMSMGMFMLPPAMISLPFKLLLFVLVDGWSLTITSLVQSF 254
>gi|254254345|ref|ZP_04947662.1| Type III secretory pathway component EscR [Burkholderia dolosa
AUO158]
gi|124898990|gb|EAY70833.1| Type III secretory pathway component EscR [Burkholderia dolosa
AUO158]
Length = 224
Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats.
Identities = 72/217 (33%), Positives = 122/217 (56%), Gaps = 5/217 (2%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL
Sbjct: 2 GNLPNPVALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALI 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTA-----IQRVAEPFWVFMRNNTREKDLSLF 148
++ ++M+P + + +TA P F+ ++TR++D F
Sbjct: 62 LSLFIMAPVGMSIRDALQARHFDASGQLSTADVGALADAALPPIKEFLVSHTRQRDREFF 121
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A S N + +L+PSF ++EL ++F IGF+I + F+++D++VA I++A
Sbjct: 122 VRTATSVWPNNRADAIKDDDLLVLVPSFTLAELTKAFHIGFVIYIVFIVVDLLVANILLA 181
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GM M+ PT+IS+PFK++ FV +DGWSLLV LV S+
Sbjct: 182 LGMQMIAPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218
>gi|269963170|ref|ZP_06177505.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832134|gb|EEZ86258.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 216
Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats.
Identities = 71/208 (34%), Positives = 125/208 (60%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M
Sbjct: 8 LNLIVTLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67
Query: 100 SPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + + Q + + + I+ +P+ F++ + RE + F D A +
Sbjct: 68 APVGFETYDYVTQHEISLEDSESIEGLIESGLQPYREFLKTHIRETESVFFTDAARTLWP 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P
Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ISLPFK++ FVL+DGW+ L LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215
>gi|325295421|ref|YP_004281935.1| flagellar biosynthetic protein FliP [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065869|gb|ADY73876.1| flagellar biosynthetic protein FliP [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 242
Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats.
Identities = 96/212 (45%), Positives = 145/212 (68%), Gaps = 5/212 (2%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
++ + TILS+AP +LI VT F R +I+ S+LR +G PPN VII+L+LF
Sbjct: 35 GNLDITLKILFLITILSLAPAILITVTSFTRIVIILSLLRHALGTPQTPPNQVIIALSLF 94
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
+T + M+PT + E+ IQP +N +I++ AI+R +EP FM NTR++DL LF+D+
Sbjct: 95 LTLFTMAPTFQQIDELAIQPYINKKISDVEAIKRASEPIKNFMLRNTRKEDLKLFLDI-- 152
Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
RN + I LIP+FM+SE+R + E+ F+I LPF++ID++VA+I+M+MGMMM
Sbjct: 153 ---RNEKPSSPQEISMLTLIPAFMVSEIRTALEVVFVIFLPFIVIDLLVASILMSMGMMM 209
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PP +SLPFK+I FVL DGW LL+++++ S+
Sbjct: 210 IPPMMLSLPFKLILFVLSDGWELLIKSIILSY 241
>gi|166714030|ref|ZP_02245237.1| type III secretion system protein [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|111146915|gb|ABH07400.1| HrcR [Xanthomonas oryzae pv. oryzicola]
Length = 214
Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 65/205 (31%), Positives = 116/205 (56%), Gaps = 1/205 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P
Sbjct: 9 LLLVVIMLGLLPFAALVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68
Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
+ + + + + EPF F+ +TRE++ + FM A
Sbjct: 69 VGMEAFKAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDK 128
Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
+ IL P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT+++
Sbjct: 129 AATLKSDDLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188
Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
+PFK++ FV +DGWS+L+ LV S+
Sbjct: 189 IPFKLLLFVAMDGWSILIHGLVLSY 213
>gi|307824489|ref|ZP_07654714.1| flagellar biosynthetic protein FliP [Methylobacter tundripaludum
SV96]
gi|307734473|gb|EFO05325.1| flagellar biosynthetic protein FliP [Methylobacter tundripaludum
SV96]
Length = 252
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 96/245 (39%), Positives = 151/245 (61%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ L + TP A V T ++ + T+L++ P LL+ +T
Sbjct: 9 LLIIGMAFLLIETPAYAAAGIEAVTVTTGKQGAQTYTVTIQILALMTLLTVLPALLLTMT 68
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R +IV S+LRT +G GS P N V++ L++F+T ++M P D+ +QP + +I
Sbjct: 69 SFTRIMIVLSLLRTALGTGSAPSNQVLLGLSMFLTIFIMMPVFDKVNAEAVQPYLEEKID 128
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
T AI++ +EPF FM TRE DL LF+ ++ ++ +++ + +L+P+F+ SE
Sbjct: 129 VTVAIEKASEPFRQFMLKQTREADLELFIRISG----KAELESAENVPFSLLLPAFVTSE 184
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFLI LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL DGWSL++E
Sbjct: 185 LKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLSPMIISLPFKIMLFVLADGWSLIMEM 244
Query: 241 LVKSF 245
L SF
Sbjct: 245 LAASF 249
>gi|255264563|ref|ZP_05343905.1| flagellar biosynthetic protein FliP [Thalassiobium sp. R2A62]
gi|255106898|gb|EET49572.1| flagellar biosynthetic protein FliP [Thalassiobium sp. R2A62]
Length = 243
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 101/245 (41%), Positives = 148/245 (60%), Gaps = 6/245 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+IR+ F AL L + V A+ ++ D S++ ++ + TILSI P L IM+T
Sbjct: 4 LIRFSFLALALFSATSVTAQE---ISLSFGDDASLAGRSIQLLALVTILSIVPGLAIMIT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
CFP + V +ILR +G+ PPN++I+SLALF+T++VM P S +GI PL ++
Sbjct: 61 CFPFIVTVLAILRQAIGLQQSPPNMLIVSLALFLTYFVMEPVFIESWTLGIGPLSTGELE 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ PF FM D+ S + DI ++IPSF++SE
Sbjct: 121 IEPALANAISPFRDFMALRIDPNTFQTLTDIRPQSSTSEDIASA---PLSLMIPSFLLSE 177
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ R+F++GFLI LPFLIID++VA I+M+MGMMM+PP +SLPFK+ FFV+ DGWSL+ +
Sbjct: 178 IERAFQVGFLIFLPFLIIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGWSLVSAS 237
Query: 241 LVKSF 245
LV S+
Sbjct: 238 LVSSY 242
>gi|1185059|gb|AAB58968.1| flagellar export protein [Borrelia burgdorferi]
Length = 254
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 81/258 (31%), Positives = 137/258 (53%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
M + F LF L FA++ N S + ++ + TI+++
Sbjct: 1 MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PP +++ LALF+T + M PT + E
Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
PL ++I + P +FM R +++ L M M++ +
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLLMSMSNYDRPK----NFSEVP 176
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISL FK+I F
Sbjct: 177 SHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLHFKLILF 236
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254
>gi|237678817|emb|CAQ57544.1| RHCR protein [Bradyrhizobium elkanii]
Length = 221
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 76/212 (35%), Positives = 115/212 (54%), Gaps = 2/212 (0%)
Query: 36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95
I+ I L + ++ T F + +V ++R +G S+PPN+V+ AL +T
Sbjct: 5 QPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALILT 64
Query: 96 FYVMSPTLDRSIEMGIQPLMNNQI--TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
++ +P +++ P + Q TA + EP ++ T E+ F+ A
Sbjct: 65 VFISAPVFEQTYNRLTDPQLRYQTFDDWVTAAKEGQEPLRAHLKKFTNEEQRRFFLSSAE 124
Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
++ IL+PSF+ISEL+R FEIGFL+ LPF+ ID+IV TI+MAMGM M
Sbjct: 125 HVWSEEMRGSATADDFVILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAMGMSM 184
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ PT IS+PFK+ FV IDGWS L+ LV S+
Sbjct: 185 VSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 216
>gi|325917011|ref|ZP_08179250.1| HrcR protein [Xanthomonas vesicatoria ATCC 35937]
gi|325536762|gb|EGD08519.1| HrcR protein [Xanthomonas vesicatoria ATCC 35937]
Length = 214
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 62/205 (30%), Positives = 114/205 (55%), Gaps = 1/205 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P
Sbjct: 9 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68
Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
+ + + + EPF F+ +T E++ + F+ A
Sbjct: 69 VGMEAFKAAQNYSPGADNSRVVVLLDACREPFRQFLLKHTHEREKAFFIRSAQQIWPKDK 128
Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
+ +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT+++
Sbjct: 129 ADTLKPDDLLVLAPAFTLSELTDAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188
Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
+PFK++ FV +DGWS+L+ LV S+
Sbjct: 189 IPFKLLLFVALDGWSMLIHGLVLSY 213
>gi|21241175|ref|NP_640757.1| type III secretion system protein [Xanthomonas axonopodis pv. citri
str. 306]
gi|78045978|ref|YP_362153.1| type III secretion system protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325927673|ref|ZP_08188901.1| HrcR protein [Xanthomonas perforans 91-118]
gi|4494848|gb|AAD21321.1| HrcR [Xanthomonas euvesicatoria]
gi|21106482|gb|AAM35293.1| HrcR protein [Xanthomonas axonopodis pv. citri str. 306]
gi|78034408|emb|CAJ22053.1| HrcR protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|325541874|gb|EGD13388.1| HrcR protein [Xanthomonas perforans 91-118]
Length = 214
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 64/205 (31%), Positives = 116/205 (56%), Gaps = 1/205 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P
Sbjct: 9 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68
Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
+ + + + + EPF F+ +TRE++ + FM A
Sbjct: 69 VGMEAFKAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDK 128
Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
+ +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT+++
Sbjct: 129 AATLKSDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188
Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
+PFK++ FV +DGWS+L+ LV S+
Sbjct: 189 IPFKLLLFVAMDGWSMLIHGLVLSY 213
>gi|254499102|ref|ZP_05111792.1| flagellar biosynthesis protein FliP [Legionella drancourtii LLAP12]
gi|254351641|gb|EET10486.1| flagellar biosynthesis protein FliP [Legionella drancourtii LLAP12]
Length = 241
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 90/242 (37%), Positives = 147/242 (60%), Gaps = 7/242 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ + L P A +++ + + + ++ F + T+LS+AP +LIM++ F
Sbjct: 6 FIVTFILLSAPLACLAGTNIGPIHLEQDN---ISPALQAFAVLTVLSLAPSILIMLSSFT 62
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R ++V S+LR +G+ PPN VIISL+LF+T + M P P +Q+ T
Sbjct: 63 RIVVVLSMLRNALGLQQTPPNTVIISLSLFLTLFTMMPVAKTIYNEAYLPYEAHQMNTET 122
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
++ +P FM TREKD+++ + +A + + I++ LIP+F++SEL+
Sbjct: 123 SLNNAIKPLKKFMLQQTREKDMNVILQLAKEPMP----SSAEKIKFYQLIPAFLLSELQT 178
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGF+I LPFL++D+IV+ I+M +GMMM+PP SISLP K++ F+LIDGW L+V+ LV
Sbjct: 179 AFQIGFMIFLPFLLVDLIVSGILMTVGMMMMPPMSISLPVKILLFILIDGWDLVVQALVG 238
Query: 244 SF 245
SF
Sbjct: 239 SF 240
>gi|303240272|ref|ZP_07326791.1| flagellar biosynthetic protein FliP [Acetivibrio cellulolyticus
CD2]
gi|302592182|gb|EFL61911.1| flagellar biosynthetic protein FliP [Acetivibrio cellulolyticus
CD2]
Length = 269
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 87/226 (38%), Positives = 143/226 (63%), Gaps = 1/226 (0%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
++ + T V+ + T+LS+AP +L+M+T F R IIV S LR +G
Sbjct: 44 PKVNVSVGTSNTPEDFTSSVQVLLLLTVLSLAPSILMMMTSFTRVIIVLSFLRNALGTQQ 103
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
+PPN V+I LALF+T ++M+P + E +P N +IT+ A++R ++ FM T
Sbjct: 104 MPPNQVLIGLALFLTLFIMNPVITEINETAYKPYSNKEITQQVALERSSKTIKTFMLKQT 163
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+KDL+LF+ ++ + + + + +IP+F+ISEL +F++GFLI LPFL+ID+
Sbjct: 164 EKKDLALFVSLSGTKTPIKEQEVPN-LPLTTIIPAFLISELTTAFKMGFLIYLPFLVIDL 222
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V++ +M+MGMMML P ISLPFK++ F+++ GW+LL + +V SF+
Sbjct: 223 VVSSTLMSMGMMMLSPVMISLPFKILLFIMVGGWNLLSQMIVNSFV 268
>gi|319790413|ref|YP_004152046.1| flagellar biosynthetic protein FliP [Thermovibrio ammonificans
HB-1]
gi|317114915|gb|ADU97405.1| flagellar biosynthetic protein FliP [Thermovibrio ammonificans
HB-1]
Length = 232
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 88/236 (37%), Positives = 153/236 (64%), Gaps = 5/236 (2%)
Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
+T L ++ + + A L ++ + T+L++ P LLI +T F R +I+
Sbjct: 1 MFLTATLFPLQAQGATLNELTAKLGNLDITLKLVFLVTLLAVVPSLLIALTSFTRIVIIL 60
Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
S+LR +G PPN V+I+L+LF+TF+ M+PT ++ + ++P +N QIT A++R +
Sbjct: 61 SLLRHALGTPQTPPNQVVIALSLFLTFFTMAPTFEKIDKEALKPYLNGQITAVEAVERAS 120
Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
P FM +NTR++DL LF+D+ + + + + + L+P+FM+SE++ +FE F
Sbjct: 121 RPLKEFMLHNTRKEDLKLFLDIRNERPKG-----PEEVSFVTLVPAFMVSEIKTAFEFVF 175
Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+I LPF++ID++VA+I+M+MGMMM+PP +SLPFK+I FV+ GW LL+++++ S+
Sbjct: 176 VIFLPFMVIDLLVASILMSMGMMMIPPMMLSLPFKLILFVVSGGWELLIKSIIVSY 231
>gi|254255057|ref|ZP_04948374.1| Type III secretory pathway component EscR [Burkholderia dolosa
AUO158]
gi|124899702|gb|EAY71545.1| Type III secretory pathway component EscR [Burkholderia dolosa
AUO158]
Length = 278
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/212 (28%), Positives = 121/212 (57%), Gaps = 5/212 (2%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ G+ +S+ P +L TC+ +F IVF I+R +G+ VP NLV+ ++AL M+ +VM
Sbjct: 62 IAMIGLLAFVSLLPFVLAAGTCYLKFSIVFVIVRNAIGLQQVPSNLVLNAVALMMSIFVM 121
Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA---HS 154
P + + ++ ++ + + + +++ + + + F +
Sbjct: 122 MPVGKAIYDQQLDNPVDFTSRESVQQFVDGGLGGYRQYLQRYSDPELTAFFQKIQVDRAV 181
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
+ ++ L+P++ +SE++ +F+IGF I LPF+I+D++V+++++A+GMMM+
Sbjct: 182 DADHAADASDEEPAIAALLPAYALSEIKSAFKIGFYIYLPFIIVDLVVSSVLLALGMMMM 241
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
P IS+P K+I FV +DGWS+L + LVK ++
Sbjct: 242 SPVVISVPIKLILFVSLDGWSILSKGLVKQYL 273
>gi|220917690|ref|YP_002492994.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955544|gb|ACL65928.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans
2CP-1]
Length = 236
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 92/240 (38%), Positives = 140/240 (58%), Gaps = 5/240 (2%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
AL L L A + + I + + V+ F + T LS A LL+ VT F R
Sbjct: 1 MSALGLPLAALSVASPAAEGALQISVNGGG-SAPVKLFLVLTALSFATALLVSVTSFTRI 59
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+IV S LR +G VPPN V+I LAL ++ +VMSPT R + P ++++I + A+
Sbjct: 60 VIVLSFLRQALGTPQVPPNQVLIGLALVLSCFVMSPTATRVYGDALGPYLDDRIGQAEAL 119
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+R + P FM TR++DL+LF +++ + D I I +P+FMISEL +F
Sbjct: 120 ERASGPVREFMLRQTRDQDLALFYEISATPRP----ASGDAIPMSIAVPAFMISELTTAF 175
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+G + +P L++D++V+ I+M+MGMMM+PPT I+LP K+ FV+ DGW L+V L +SF
Sbjct: 176 RMGLFLYVPLLLVDLLVSAILMSMGMMMVPPTLIALPVKIGLFVMADGWRLVVGALARSF 235
>gi|119953074|ref|YP_945283.1| flagellar biosynthesis protein FliP [Borrelia turicatae 91E135]
gi|119861845|gb|AAX17613.1| flagellar biosynthetic protein FliP [Borrelia turicatae 91E135]
Length = 256
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 83/258 (32%), Positives = 136/258 (52%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
+ + F LF FA++ + + ++ I TI+++
Sbjct: 3 LSKKLSFFLFFGVINFAFAQTKSLQTTTGLNFPFVDLVNSVGGGIIFPLQLLLILTIITL 62
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PPN VI+ LALF+T + M PT + +
Sbjct: 63 SPAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKEAY 122
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTR---EKDLSLFMDMAHSSHRNTDITKNDHIE 168
PL +++I R P FM +++ LFM +++ +
Sbjct: 123 LPLQDSKIGFNEFYDRGIAPLRNFMYKQMSNSKHEEIRLFMSISNYPRPK----NFSEVP 178
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI SF++ EL+ +F++G LI LPF++ID+IVA ++MAMGM+MLPP ISLPFK++ F
Sbjct: 179 THVLIASFVLHELKVAFKMGILIFLPFIVIDIIVAAVLMAMGMIMLPPVMISLPFKLMLF 238
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ LVKSF+
Sbjct: 239 VMVDGWTLITSGLVKSFM 256
>gi|224531662|ref|ZP_03672294.1| flagellar biosynthetic protein FliP [Borrelia valaisiana VS116]
gi|224511127|gb|EEF81533.1| flagellar biosynthetic protein FliP [Borrelia valaisiana VS116]
Length = 254
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 80/258 (31%), Positives = 138/258 (53%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA---------DLSISTWIVRTFGIFTILSI 51
M + F LF L FA++ S + ++ + TI+++
Sbjct: 1 MRKCFNFFLFFSVTSLSFAQTKSLQATKGLNFPFLNFENISGSEIAFSLQLLILLTIITL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PP +I+ LALF+T + M PT + +
Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIIMGLALFLTIFTMWPTFNVIYKQAY 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTRE---KDLSLFMDMAHSSHRNTDITKNDHIE 168
PL ++I + P +FM + +++ LFM +++ +
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGSHEEIRLFMSISNYDRPK----NFSEVP 176
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254
>gi|294665992|ref|ZP_06731255.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292604240|gb|EFF47628.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 214
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 64/205 (31%), Positives = 116/205 (56%), Gaps = 1/205 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P
Sbjct: 9 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68
Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
+ + + + + EPF F+ +TRE++ + FM A
Sbjct: 69 VGMEAFKAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDK 128
Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
+ +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT+++
Sbjct: 129 AATLKSDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188
Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
+PFK++ FV +DGWS+L+ LV S+
Sbjct: 189 IPFKLLLFVAMDGWSMLMHGLVLSY 213
>gi|22124444|ref|NP_667867.1| type III secretion system protein [Yersinia pestis KIM 10]
gi|108810002|ref|YP_653918.1| type III secretion system protein [Yersinia pestis Antiqua]
gi|108813557|ref|YP_649324.1| type III secretion system protein [Yersinia pestis Nepal516]
gi|145600947|ref|YP_001165023.1| type III secretion system protein [Yersinia pestis Pestoides F]
gi|161511452|ref|NP_991819.2| type III secretion system protein [Yersinia pestis biovar Microtus
str. 91001]
gi|161760592|ref|YP_068873.2| type III secretion system protein [Yersinia pseudotuberculosis IP
32953]
gi|165936558|ref|ZP_02225126.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis biovar Orientalis str. IP275]
gi|170026115|ref|YP_001722620.1| type III secretion system protein [Yersinia pseudotuberculosis
YPIII]
gi|186893685|ref|YP_001870797.1| type III secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|21957231|gb|AAM84118.1|AE013654_7 putative type III secretion system component [Yersinia pestis KIM
10]
gi|108777205|gb|ABG19724.1| type III secretion apparatus protein [Yersinia pestis Nepal516]
gi|108781915|gb|ABG15973.1| putative type III secretion apparatus protein [Yersinia pestis
Antiqua]
gi|145212643|gb|ABP42050.1| type III secretion apparatus protein [Yersinia pestis Pestoides F]
gi|165915674|gb|EDR34283.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis biovar Orientalis str. IP275]
gi|169752649|gb|ACA70167.1| Yop virulence translocation R [Yersinia pseudotuberculosis YPIII]
gi|186696711|gb|ACC87340.1| Yop virulence translocation R [Yersinia pseudotuberculosis PB1/+]
Length = 236
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 74/215 (34%), Positives = 124/215 (57%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + + +LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL
Sbjct: 22 ELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALV 81
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T ++M+P ++N I Q P+ F++ NT + ++ F D+
Sbjct: 82 LTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI 141
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGM
Sbjct: 142 VQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM 201
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MM+ P ++SLPFK++ FVL+DGWSL++ LV S++
Sbjct: 202 MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL 236
>gi|269796382|ref|YP_003315837.1| flagellar biosynthetic protein FliP [Sanguibacter keddieii DSM
10542]
gi|269098567|gb|ACZ23003.1| flagellar biosynthetic protein FliP [Sanguibacter keddieii DSM
10542]
Length = 283
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 88/234 (37%), Positives = 142/234 (60%), Gaps = 4/234 (1%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
+ P A + +++ + + + T+LS+AP LL+M+T F + +V ++
Sbjct: 53 IAPVDPVAPAPGVVTVDLDGTTTAPSSSIVVLLGITLLSVAPSLLLMMTSFTKIFVVLAL 112
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
R +G+ VPPN V+ LALF++ ++M+P + + E+G+QP +N + A++ + P
Sbjct: 113 TRNALGLQGVPPNQVLAGLALFLSLFIMAPIIGQVNELGVQPYVNGGLDFGAAVEAGSAP 172
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
FM TRE+D++L A + T + LIPSFM+SELR +F IGF+I
Sbjct: 173 LREFMLGQTREEDIALMTRAADQPNP----TDPSTVPMLTLIPSFMLSELRAAFIIGFVI 228
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFL+ID++V+ +M+MGMMMLPP ISLPFK++ FVL+DGW ++V LV S+
Sbjct: 229 FIPFLVIDLVVSASLMSMGMMMLPPVMISLPFKILLFVLVDGWGMIVTALVGSY 282
>gi|329897649|ref|ZP_08272173.1| Flagellar biosynthesis protein fliP [gamma proteobacterium
IMCC3088]
gi|328921098|gb|EGG28507.1| Flagellar biosynthesis protein fliP [gamma proteobacterium
IMCC3088]
Length = 250
Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 91/247 (36%), Positives = 152/247 (61%), Gaps = 5/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIP--ADLSISTWIVRTFGIFTILSIAPILLIM 58
+I+ L ++ ++ F++ ++ V + + + ++ G+ TIL++ P LL+M
Sbjct: 4 LIKPGLSLLLVLFADVSFSQGTIPIVTSNALQNGQTEYSITLQLLGLMTILTLLPSLLLM 63
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R IIV S+LR MG PPN V++ LALF+T ++M+P E IQP +N++
Sbjct: 64 MTSFTRIIIVLSLLRQAMGTAQTPPNQVLLGLALFLTIFIMTPVATVVNEEAIQPYVNSE 123
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
I A+ R P F+ TRE D+ F+ + + + + + IL+P+F+
Sbjct: 124 IGLEDALLRAQVPIKTFLLQQTRESDIQTFISLLN---DDVQYNTPNDLPLNILVPAFIA 180
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F IGF++ +PF++ID++VA+I+M+MGMMML P ISLPFK++ FV++DGW+LL+
Sbjct: 181 SELKSAFTIGFMLYIPFVVIDLVVASILMSMGMMMLSPMMISLPFKLLLFVMVDGWNLLI 240
Query: 239 ENLVKSF 245
+L SF
Sbjct: 241 GSLAGSF 247
>gi|149178714|ref|ZP_01857297.1| flagellar biosynthetic protein fliP-putative transporter of
flagellar protein [Planctomyces maris DSM 8797]
gi|148842412|gb|EDL56792.1| flagellar biosynthetic protein fliP-putative transporter of
flagellar protein [Planctomyces maris DSM 8797]
Length = 330
Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 85/240 (35%), Positives = 133/240 (55%), Gaps = 14/240 (5%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
A + ++ F + T+LS+AP +LIM T F RF+IVF +LR +G
Sbjct: 86 AGVPEMLDVEQMTSPQGLNSTLKLFLLLTVLSLAPSILIMTTSFIRFVIVFGLLRQALGT 145
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ----ITETTAIQRVAEPFWV 134
+PPN V+ SL+LF+T VM+P +++ E GI P N ++ A Q+ P
Sbjct: 146 QQLPPNQVLTSLSLFLTIMVMAPIWEKAYEEGIVPYTNQTQQAPVSLEAAFQKTVAPLRK 205
Query: 135 FMRNNTREK----------DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
FM + D + + + D + +L+P++M+SE++ +
Sbjct: 206 FMSDQIELTGNSDTVWMFLDYQQPLPGSPGAESYQPPRDYDEVPLTVLLPAYMLSEVKTA 265
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F IGF + LPF++IDM++++I+++MGMMMLPP ISLPFK++ FVLIDGW L V L++S
Sbjct: 266 FLIGFQLYLPFIVIDMVISSILISMGMMMLPPVLISLPFKILLFVLIDGWLLTVGMLLES 325
>gi|83646012|ref|YP_434447.1| type III secretion system protein [Hahella chejuensis KCTC 2396]
gi|83634055|gb|ABC30022.1| Type III secretory pathway, component EscR [Hahella chejuensis KCTC
2396]
Length = 215
Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 67/206 (32%), Positives = 117/206 (56%), Gaps = 2/206 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+++ P +M T F + +V +LR +G+ +PPN+ + LA+ +T Y+M+P
Sbjct: 9 LTLGLAGIALIPFFAVMATSFVKIAVVLGLLRNALGIQQIPPNMALYGLAIILTAYIMAP 68
Query: 102 TLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ ++ + T+ + ++P+ F++ + E + + F + A
Sbjct: 69 VGISAYNELSTKPISLENTQELKALMDTASQPYKEFLQRHGSEDEQTFFHETAAEIWPED 128
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + +LIP+F SEL +FEIGFLI LPFL ID+I++ I++AMGMMM+ P +I
Sbjct: 129 VAKGLEKDSFFVLIPAFTASELTSAFEIGFLIYLPFLAIDLIISNILLAMGMMMVSPMTI 188
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
SLPFK++ FVL+DGW+ L+ LV ++
Sbjct: 189 SLPFKLLLFVLMDGWTRLIHGLVLAY 214
>gi|119503675|ref|ZP_01625758.1| flagellar biosynthetic protein [marine gamma proteobacterium
HTCC2080]
gi|119460737|gb|EAW41829.1| flagellar biosynthetic protein [marine gamma proteobacterium
HTCC2080]
Length = 248
Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 89/242 (36%), Positives = 143/242 (59%), Gaps = 7/242 (2%)
Query: 7 FALFLVTPELVFAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
L + PE A+ + +++ S ++ + T+L++ P +LI +T F
Sbjct: 9 AVLAFLLPESAMAQQATIPLVSTMPNANGGSDYALGIQILLVMTVLTLLPAMLITMTSFT 68
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
R +IV +ILR MG P N +I+ L+LF++ ++M+P D + ++P ++
Sbjct: 69 RVLIVLAILRQAMGTAQTPSNQIILGLSLFLSLFIMAPVFDVAWTTALKPFLDGGTDFEG 128
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
A++ PF FM TR+ DL++F +M D + +L+PSF++SEL+
Sbjct: 129 ALEAAKIPFREFMFTQTRDSDLTMFAEMGGYG----AFASQDDVPMFVLLPSFLVSELKT 184
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+F+IGFL+ +PFL+ID++VA I+MAMGMMML P ISLPFK++ FVLIDGW+L+ LV+
Sbjct: 185 AFQIGFLLFVPFLVIDLVVAAILMAMGMMMLSPIIISLPFKLMLFVLIDGWALVTSTLVR 244
Query: 244 SF 245
SF
Sbjct: 245 SF 246
>gi|294625840|ref|ZP_06704456.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292599868|gb|EFF43989.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 214
Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 63/205 (30%), Positives = 116/205 (56%), Gaps = 1/205 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P
Sbjct: 9 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68
Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
+ + + + + EPF F+ +TRE++ + FM A
Sbjct: 69 VGMEAFKAAQNYGTGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDK 128
Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
+ +L P+F +SEL +F IGFL+ + F++ID++VA +MAMG+ + PT+++
Sbjct: 129 AATLKSDDLLVLAPAFTLSELTEAFRIGFLLYMVFIVIDLVVANALMAMGLSQVTPTNVA 188
Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
+PFK++ FV +DGWS+L+ LV S+
Sbjct: 189 IPFKLLLFVAMDGWSMLMHGLVLSY 213
>gi|94987081|ref|YP_595014.1| flagellar biosynthesis protein FliP [Lawsonia intracellularis
PHE/MN1-00]
gi|94731330|emb|CAJ54693.1| Flagellar biosynthesis pathway, component FliP [Lawsonia
intracellularis PHE/MN1-00]
Length = 262
Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 90/242 (37%), Positives = 146/242 (60%), Gaps = 4/242 (1%)
Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
FF L + E + + + + + ++ + T+LS+AP +++ VT F R
Sbjct: 24 LFFPLSIQAAEDIAIPNLQLTLSGGQTEPEKVSLLLEILFMLTVLSLAPAIMLTVTSFTR 83
Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
IIVF LR MG+ +PP ++ SLA+FMT +M P + + +QP ++ ++ + A
Sbjct: 84 IIIVFHFLRQAMGIQQIPPTQILASLAIFMTVIIMFPVGKQINDTALQPYLDERLGFSEA 143
Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
+ R P F+ +TREKDLS+F +A D + +L +++ISEL+
Sbjct: 144 LTRAQAPLRTFLFKHTREKDLSIFYSIARMEQPK----NKDDVPTILLSAAYVISELKTG 199
Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
F IGFLI +PFLI+DM+V+++++AMGMMMLPP +S+PFK++ FV+IDGW+LL+ +LV S
Sbjct: 200 FIIGFLIYIPFLIVDMVVSSVLLAMGMMMLPPMMVSMPFKLLLFVMIDGWNLLIGSLVNS 259
Query: 245 FI 246
F+
Sbjct: 260 FL 261
>gi|12802687|gb|AAK08058.1|AF320050_2 HrcR [Xanthomonas oryzae pv. oryzae]
gi|9711593|dbj|BAB07862.1| HrcR [Xanthomonas oryzae pv. oryzae]
gi|24251298|gb|AAN46417.1| HrcR [Xanthomonas oryzae pv. oryzae]
Length = 200
Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 65/199 (32%), Positives = 115/199 (57%), Gaps = 1/199 (0%)
Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
+L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P +
Sbjct: 1 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60
Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
+ + + + EPF F+ +T E++ + FM A T
Sbjct: 61 KAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKS 120
Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
+ IL P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PFK++
Sbjct: 121 DDLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLL 180
Query: 227 FFVLIDGWSLLVENLVKSF 245
FV +DGWS+L+ LV S+
Sbjct: 181 LFVAMDGWSMLIHGLVLSY 199
>gi|320184486|gb|EFW59290.1| Flagellar biosynthesis protein FliP [Shigella flexneri CDC 796-83]
gi|332096919|gb|EGJ01908.1| flagellar biosynthetic protein FliP [Shigella boydii 3594-74]
Length = 222
Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 78/207 (37%), Positives = 123/207 (59%), Gaps = 4/207 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILRPAYVTSELKTAFQI 185
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMML 214
GF I +PFLIID+++A+++MA+GMMM+
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMV 212
>gi|294828142|ref|NP_712792.2| flagellar biosynthesis protein FliP [Leptospira interrogans serovar
Lai str. 56601]
gi|293385989|gb|AAN49810.2| flagellar biosynthesis protein FliP [Leptospira interrogans serovar
Lai str. 56601]
Length = 251
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 83/243 (34%), Positives = 146/243 (60%), Gaps = 7/243 (2%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
FF L + +L+ +N ++ + + TILS+AP +++ +T F +
Sbjct: 12 FFTLEAQSAGTRIPIPNLNINVNEAKSPRETSLSLMVLFLVTILSLAPAIVMSLTSFTKI 71
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+IV +R + + ++PPN V++ LALFMTF++M+PTL+ E + P + +I
Sbjct: 72 VIVLDFVRRALSIQNLPPNQVMMGLALFMTFFIMAPTLNTVNEKALGPYLEGKIDTNAFF 131
Query: 126 QRVAEPFWVFMRNN---TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
++ P FM + KD++LF+ + + D + +LIP+FM+SE++
Sbjct: 132 EKGMIPIREFMMRQIGTSGAKDVALFLKIGKVEK----VESFDDVPSYVLIPAFMLSEIK 187
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
++F IG +I +PF++ID++VA+ +++MG+MMLPP +SLPFK+I FVL+DGW+L+V LV
Sbjct: 188 KAFWIGIVIFIPFIVIDLVVASALLSMGLMMLPPVMVSLPFKLILFVLVDGWNLIVYELV 247
Query: 243 KSF 245
+S+
Sbjct: 248 RSY 250
>gi|159024057|gb|ABW87285.1| HrcR [Xanthomonas fuscans subsp. fuscans]
Length = 214
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 1/205 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P
Sbjct: 9 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68
Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
+ + + + + EPF F+ +TRE++ FM A
Sbjct: 69 VGMEAFKAAQNYGTGSDNSRVVVLLDACREPFRQFLLKHTREREKVFFMRSAQQIWPKDK 128
Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
+ +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT+++
Sbjct: 129 AATLKSDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188
Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
+PFK++ FV +DGWS+L+ LV S+
Sbjct: 189 IPFKLLLFVAMDGWSMLMHGLVLSY 213
>gi|319795616|ref|YP_004157256.1| yop virulence translocation r [Variovorax paradoxus EPS]
gi|315598079|gb|ADU39145.1| Yop virulence translocation R [Variovorax paradoxus EPS]
Length = 219
Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats.
Identities = 71/216 (32%), Positives = 121/216 (56%), Gaps = 4/216 (1%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + L + +MVT + + IIVF +LRT +G+ PPN+V+ +A+
Sbjct: 3 GAIPEPITIVALILALGVTSFAALMVTSYTKLIIVFGLLRTALGLQQTPPNMVLNGIAII 62
Query: 94 MTFYVMSPTLDRSIE----MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
++ Y+M+P + + I P F++ +TRE++ F+
Sbjct: 63 LSVYIMAPVGMEVGDALRNRTLGQKGEGLNDIVAVIDAAKVPLKEFLQKHTRERERQFFL 122
Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
A S + ++ +L+PSF +SEL R+F+IGF+I L F+++D+IVAT+++A+
Sbjct: 123 KSASSMWPQARAAQLQPDDFMVLVPSFTLSELTRAFQIGFVIYLVFVVVDLIVATVLLAL 182
Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GM M+ PT+ISLPFK++ FV++DGW+ LV LV S+
Sbjct: 183 GMSMIAPTTISLPFKLLLFVMLDGWTRLVHGLVLSY 218
>gi|218892351|ref|YP_002441218.1| type III secretion system protein [Pseudomonas aeruginosa LESB58]
gi|218772577|emb|CAW28360.1| translocation protein in type III secretion [Pseudomonas aeruginosa
LESB58]
Length = 217
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 69/191 (36%), Positives = 115/191 (60%), Gaps = 2/191 (1%)
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS--IEMGIQPL 114
+M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P +
Sbjct: 25 VMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRNHDVS 84
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+++ + + P+ F++ +E++ + FM+ + + D IL+P
Sbjct: 85 LSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLP 144
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FVL+DGW
Sbjct: 145 AFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVLLDGW 204
Query: 235 SLLVENLVKSF 245
+ L LV S+
Sbjct: 205 ARLTHGLVISY 215
>gi|171915734|ref|ZP_02931204.1| type III secretion system protein [Verrucomicrobium spinosum DSM
4136]
Length = 222
Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats.
Identities = 71/209 (33%), Positives = 131/209 (62%), Gaps = 2/209 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ + ++L++ P L +MVT + + ++V S++R +G+ +PPN+V+ +A+ +T Y+
Sbjct: 9 PLTLIVLASVLALIPFLAVMVTSYVKLVVVLSLVRNALGVQQIPPNMVLNGIAVILTIYI 68
Query: 99 MSPTLDRSIEMGIQPLMNN--QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P ++ + + N + + R + P F+ +T +++ + F+D A
Sbjct: 69 MAPIGQQTFANLEKEDLKNLSVESIKGIMDRSSTPIRKFLAYHTADREKAFFLDTARRLW 128
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ K D ++ +LIP+F +SEL +F+IGFL+ LPF+ ID+IV+ I++AMGMMM+ P
Sbjct: 129 GDKAQVKIDKDDFFVLIPAFTVSELTAAFQIGFLLYLPFIAIDLIVSNILLAMGMMMVSP 188
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ISLPFK++ FVL+DGW+ L+ LV ++
Sbjct: 189 MTISLPFKLLLFVLVDGWARLIHGLVITY 217
>gi|83747860|ref|ZP_00944893.1| HrcR [Ralstonia solanacearum UW551]
gi|83725507|gb|EAP72652.1| HrcR [Ralstonia solanacearum UW551]
Length = 252
Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats.
Identities = 55/208 (26%), Positives = 116/208 (55%), Gaps = 4/208 (1%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ ++M+P
Sbjct: 44 LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAP 103
Query: 102 TLDRSIEMGI----QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+++ N + +PF F+ +T ++ + FM A
Sbjct: 104 VGMEAMQRAHVQLNAQGGANITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 163
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+
Sbjct: 164 PAKAALLKEDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 223
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
++++PFK++ FV++DGWS+LV LV ++
Sbjct: 224 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 251
>gi|220903656|ref|YP_002478968.1| flagellar biosynthesis protein FliP [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867955|gb|ACL48290.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 225
Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats.
Identities = 86/227 (37%), Positives = 141/227 (62%), Gaps = 4/227 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
+ + + ++ + TILS+AP +++ VT F R IIVFS LR MG+
Sbjct: 2 PTLQLTLAGGAKSPEKVSILLEILFLLTILSVAPAIMLTVTSFTRIIIVFSFLRQAMGVQ 61
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
+PP ++ SLA+FMT +M P + + +QP +N +I A+ + P FM +
Sbjct: 62 QLPPTQILASLAIFMTVVIMFPVGRQINDDALQPYLNERIDYREALDKAQAPLRSFMFKH 121
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TREKDLS+F +++ + + +L +++ISEL+ +F IGFLI +PFL++D
Sbjct: 122 TREKDLSIFYSISNMEAPK----NKEEVPTMLLAAAYVISELKTAFTIGFLIYIPFLVLD 177
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+++++++AMGMMMLPP +S+PFK++ FV++DGW+LLV +LV SF+
Sbjct: 178 MVISSVLLAMGMMMLPPMMVSMPFKLLLFVMVDGWNLLVGSLVNSFL 224
>gi|86157788|ref|YP_464573.1| flagellar biosynthesis protein FliP [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774299|gb|ABC81136.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans
2CP-C]
Length = 236
Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats.
Identities = 91/240 (37%), Positives = 140/240 (58%), Gaps = 5/240 (2%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
AL L L A + + I + + V+ F + T LS A LL+ VT F R
Sbjct: 1 MSALGLPLAALTVASPAAEGALQISVNGGG-SAPVKLFLVLTALSFATALLVSVTSFTRI 59
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+IV S LR +G VPPN V++ LAL ++ +VMSPT R + P ++++I + A+
Sbjct: 60 VIVLSFLRQALGTPQVPPNQVLVGLALVLSCFVMSPTATRVYADALGPYLDDRIGQAEAL 119
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+R + P FM TR++DL+LF +++ + D I I +P+FMISEL +F
Sbjct: 120 ERASGPVREFMLRQTRDQDLALFYEISATPRP----AAGDAIPMSIAVPAFMISELTTAF 175
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+G + +P L++D++V+ I+M+MGMMM+PPT I+LP K+ FV+ DGW L+V L +SF
Sbjct: 176 RMGLFLYVPLLLVDLLVSAILMSMGMMMVPPTLIALPVKIGLFVMADGWRLVVGALARSF 235
>gi|53724243|ref|YP_104210.1| flagellar biosynthesis protein FliP [Burkholderia mallei ATCC
23344]
gi|67641568|ref|ZP_00440344.1| flagellar biosynthetic protein FliP [Burkholderia mallei GB8 horse
4]
gi|167001619|ref|ZP_02267413.1| flagellar biosynthetic protein FliP [Burkholderia mallei PRL-20]
gi|254201283|ref|ZP_04907647.1| flagellar biosynthetic protein FliP [Burkholderia mallei FMH]
gi|254206625|ref|ZP_04912976.1| flagellar biosynthetic protein FliP [Burkholderia mallei JHU]
gi|254357358|ref|ZP_04973632.1| flagellar biosynthetic protein FliP [Burkholderia mallei
2002721280]
gi|52427666|gb|AAU48259.1| flagellar biosynthetic protein FliP, interruption-C [Burkholderia
mallei ATCC 23344]
gi|147747177|gb|EDK54253.1| flagellar biosynthetic protein FliP [Burkholderia mallei FMH]
gi|147752167|gb|EDK59233.1| flagellar biosynthetic protein FliP [Burkholderia mallei JHU]
gi|148026422|gb|EDK84507.1| flagellar biosynthetic protein FliP [Burkholderia mallei
2002721280]
gi|238522521|gb|EEP85965.1| flagellar biosynthetic protein FliP [Burkholderia mallei GB8 horse
4]
gi|243062629|gb|EES44815.1| flagellar biosynthetic protein FliP [Burkholderia mallei PRL-20]
Length = 175
Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats.
Identities = 79/177 (44%), Positives = 116/177 (65%), Gaps = 4/177 (2%)
Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
S+LR +G S PPN V++ LALF+T +VMSP LDR+ +P + A+QR
Sbjct: 2 LSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQAVQRG 61
Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
PF FM TRE DL+LF ++ + + + +L+P+F+ SEL+ F+IG
Sbjct: 62 TAPFKAFMLKQTRETDLALFAKISK----AAPMQGPEDVPLSLLVPAFVTSELKTGFQIG 117
Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
F I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 118 FTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 174
>gi|116328498|ref|YP_798218.1| flagellar biosynthesis protein FliP [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116331228|ref|YP_800946.1| flagellar biosynthesis protein FliP [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116121242|gb|ABJ79285.1| Endoflagellar biosynthesis pathway protein [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116124917|gb|ABJ76188.1| Endoflagellar biosynthesis pathway protein [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
Length = 260
Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats.
Identities = 80/228 (35%), Positives = 144/228 (63%), Gaps = 7/228 (3%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+L+ +N ++ + + TILS+AP +++ +T F + +IV +R + + +
Sbjct: 36 PNLNINVNEANSPRETSLSLMVLFLVTILSLAPAIVMSLTSFTKIVIVLDFVRRALSIQN 95
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN- 139
+PPN V++ LALFMTF++M+PTL+ E + P + +I + ++ P FM
Sbjct: 96 LPPNQVMMGLALFMTFFIMAPTLNTVNERALAPYLEGKIDTNSFFEKGMVPIREFMMRQI 155
Query: 140 --TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
+ KD++LF+ + ++ D + +LIP+FM+SE++++F IG +I +PF++
Sbjct: 156 GTSGAKDVALFLKIGKVE----EVESFDDVPSYVLIPAFMLSEIKKAFWIGIIIFIPFIV 211
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
ID++VA+ +++MG+MMLPP +SLPFK+I FVL+DGW+L+V LV+S+
Sbjct: 212 IDLVVASALLSMGLMMLPPVMVSLPFKLILFVLVDGWNLIVYELVRSY 259
>gi|329889296|ref|ZP_08267639.1| hypothetical protein BDIM_09760 [Brevundimonas diminuta ATCC 11568]
gi|328844597|gb|EGF94161.1| hypothetical protein BDIM_09760 [Brevundimonas diminuta ATCC 11568]
Length = 219
Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats.
Identities = 78/208 (37%), Positives = 125/208 (60%), Gaps = 4/208 (1%)
Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
+L++AP + +MVT F + ++V S+LR +G+ VPPN+V+ +AL +T YVM P
Sbjct: 12 LVTVILLALAPFVAVMVTSFTKIVVVLSLLRNALGLQQVPPNIVLNGMALILTLYVMFPV 71
Query: 103 LDRSIEMGIQPLMNNQITETTAI----QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
R E +++T + EP F+ ++ E++ + F+ A
Sbjct: 72 GQRMAEATNHMPPTAALSDTQQLFAYADSAKEPLRDFLIKHSSERERAFFLRTAQRISTP 131
Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
+ ++ +++P+F +SEL +F+IGFLI LPFLIID++V+ I++AMGMMML PT+
Sbjct: 132 EKRAEITARDFLVVVPAFTVSELATAFQIGFLIFLPFLIIDLVVSNILLAMGMMMLSPTT 191
Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+SLPFK++ FVLIDGW L LV S++
Sbjct: 192 VSLPFKLLLFVLIDGWVKLSHGLVLSYV 219
>gi|27376930|ref|NP_768459.1| type III secretion system protein [Bradyrhizobium japonicum USDA
110]
gi|12620526|gb|AAG60802.1|AF322012_107 RhcR [Bradyrhizobium japonicum]
gi|27350072|dbj|BAC47084.1| RhcR protein [Bradyrhizobium japonicum USDA 110]
Length = 221
Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats.
Identities = 75/212 (35%), Positives = 114/212 (53%), Gaps = 2/212 (0%)
Query: 36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95
I+ I L + ++ T F + +V ++R +G S+PPN+V+ AL +T
Sbjct: 5 QPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALILT 64
Query: 96 FYVMSPTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
++ +P +++ P + Q A + EP V ++ T E+ F+
Sbjct: 65 VFISAPVFEQTYNRLTDPQLRYQSFDDWVMAAKEGQEPLRVHLKKFTNEEQRRFFLSSTE 124
Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
++ IL+PSF+ISEL+R FEIGFL+ LPF+ ID+IV TI+MAMGM M
Sbjct: 125 HVWSEEMRGSVTADDFSILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAMGMSM 184
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ PT IS+PFK+ FV IDGWS L+ LV S+
Sbjct: 185 VSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 216
>gi|114566400|ref|YP_753554.1| flagellar biosynthesis protein FliP [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114337335|gb|ABI68183.1| flagellar biosynthetic protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 240
Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 151/243 (62%), Gaps = 9/243 (3%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLS-----ISTWIVRTFGIFTILSIAPILLIMVTCF 62
L LV P V A+ +N+ + ++ + T+L++AP +LIM+T F
Sbjct: 1 MLLLVFPGTVAAEPLQLPNLNLQIGGGAGEPQDLSVALQLIILITVLTLAPAILIMLTSF 60
Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
R ++V + +RT + +PPN ++I +ALF+TF+VM+PT +QP +IT+
Sbjct: 61 TRIMVVLAFIRTSLATQQMPPNQLLIGMALFLTFFVMAPTFQEVNSQALQPYFKGKITQE 120
Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
A ++ P FM TREKDL+LF+ M+ I +LIPSF+ISEL+
Sbjct: 121 QAFEKGMNPLRSFMFKQTREKDLALFVKMSKMERP----HNFKDIPNYVLIPSFVISELK 176
Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
+F+IGF+I +PFLIIDM+VA+ +M+MGMMMLPP ISLPFK++ FVL+DGW+L++++L+
Sbjct: 177 TAFQIGFIIFIPFLIIDMVVASALMSMGMMMLPPMMISLPFKILLFVLVDGWNLVIQSLI 236
Query: 243 KSF 245
SF
Sbjct: 237 LSF 239
>gi|84621752|ref|YP_449124.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188574345|ref|YP_001911274.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|7288131|dbj|BAA92826.1| hrpD2 [Xanthomonas oryzae pv. oryzae]
gi|50428356|dbj|BAD29993.1| HrcR [Xanthomonas oryzae pv. oryzae]
gi|84365692|dbj|BAE66850.1| HrcR protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188518797|gb|ACD56742.1| type III secretion apparatus protein, YscR/HrcR family [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 214
Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats.
Identities = 65/205 (31%), Positives = 116/205 (56%), Gaps = 1/205 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P
Sbjct: 9 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68
Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
+ + + + + EPF F+ +T E++ + FM A
Sbjct: 69 VGMEAFKAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDK 128
Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
T + IL P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT+++
Sbjct: 129 ATTLKSDDLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188
Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
+PFK++ FV +DGWS+L+ LV S+
Sbjct: 189 IPFKLLLFVAMDGWSMLIHGLVLSY 213
>gi|319787090|ref|YP_004146565.1| flagellar biosynthetic protein FliP [Pseudoxanthomonas suwonensis
11-1]
gi|317465602|gb|ADV27334.1| flagellar biosynthetic protein FliP [Pseudoxanthomonas suwonensis
11-1]
Length = 257
Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats.
Identities = 85/222 (38%), Positives = 129/222 (58%), Gaps = 4/222 (1%)
Query: 24 HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
DV + + ++T + T +++ P LL+++TCF R IIV ++LR MG G P
Sbjct: 37 PDVTVGQIGDNPISVPLQTLLLMTGITLLPSLLLVMTCFTRIIIVMALLRQAMGTGQTPS 96
Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
N +++ L+LF+T +M P ++ + G P +N +I +A P FM RE
Sbjct: 97 NQILVGLSLFLTAMIMMPVWQKAWDAGFAPYLNGEIDFRSAWDLGTAPLRAFMLAQVRET 156
Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
DL F +A + + + +L SF+ SEL+ +FEIGFLI +PF+IID++VA
Sbjct: 157 DLMTFAGLAGH----DTYASPEAVPFPVLAASFVTSELKTAFEIGFLIFIPFVIIDLVVA 212
Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+++M+MGMMML P IS PFK++ FVL+DGW L V L SF
Sbjct: 213 SVLMSMGMMMLSPMLISAPFKILLFVLVDGWVLTVGTLAASF 254
>gi|315126005|ref|YP_004068008.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913]
gi|315014519|gb|ADT67857.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913]
Length = 250
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 82/245 (33%), Positives = 136/245 (55%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+ + + L P + A+ + AD + ++ + T+LS+ P LL+++T
Sbjct: 6 IFKVSLLLIMLFIPSWLNAEELTLFSLKDTADGQDYSVKLQILLLMTVLSLLPALLMVLT 65
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIV +ILR MG+ PPN ++I ++L +T +M P + P I
Sbjct: 66 SFTRIIIVLAILRQAMGLQQSPPNKILIGISLMLTMLIMRPVWQDIYQNAYTPFQQQTIG 125
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+ +P FM TRE +L + +A+ + I + +L+P+F++SE
Sbjct: 126 LEDALLTAEKPLRAFMLRQTRESELRQVLLIANEPT----TLTAEEIPFEVLMPAFVLSE 181
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L +F+IGF++ +PFLIID++V++++M+MGMMML P ISLPFK++ FVL DGWS++
Sbjct: 182 LTTAFQIGFMLFIPFLIIDLVVSSVLMSMGMMMLSPLIISLPFKLMVFVLADGWSMIAGT 241
Query: 241 LVKSF 245
L +F
Sbjct: 242 LAATF 246
>gi|114798811|ref|YP_758976.1| flagellar biosynthesis protein FliP [Hyphomonas neptunium ATCC
15444]
gi|114738985|gb|ABI77110.1| flagellar biosynthetic protein FliP [Hyphomonas neptunium ATCC
15444]
Length = 252
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 86/227 (37%), Positives = 144/227 (63%), Gaps = 5/227 (2%)
Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
A ++L ++N D +S+ +V+ + T+LS+ P + +MVTC P +IVFS +R +G+
Sbjct: 29 APAALDGLLNPSGDGQLSSSVVQLVLLVTVLSLVPGIAMMVTCLPFMVIVFSFMRQAIGV 88
Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
PPN++I++LA+F+TF+VM P + E GI P M+ + E A +PF FM
Sbjct: 89 QQAPPNMMIMALAMFLTFFVMEPVFMSAWENGISPYMDGVLDEQQAWALSTDPFRAFMMQ 148
Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
T + L D + + + + + +L +FM+SE++ +F+IGF+I LPF++I
Sbjct: 149 RTDPEALLTLGDAVNR-----PVVEGEDPAFSLLATAFMLSEIKHAFQIGFVIFLPFMVI 203
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
D++VA+++MA+GMMM+PPT +SLPFK+ FFVL DGW + E +++ +
Sbjct: 204 DLVVASVLMAVGMMMVPPTVVSLPFKLGFFVLADGWLKITEAVLRGY 250
>gi|197122898|ref|YP_002134849.1| flagellar biosynthesis protein FliP [Anaeromyxobacter sp. K]
gi|196172747|gb|ACG73720.1| flagellar biosynthetic protein FliP [Anaeromyxobacter sp. K]
Length = 236
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 89/229 (38%), Positives = 137/229 (59%), Gaps = 5/229 (2%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
A + + I + + V+ F + T LS A LL+ VT F R +IV S LR +
Sbjct: 12 SVASPAAEGALQISVNGGG-SAPVKLFLVLTALSFATALLVSVTSFTRIVIVLSFLRQAL 70
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G VPPN V+I LAL ++F+VMSPT R + P ++++I + A++R + P FM
Sbjct: 71 GTPQVPPNQVLIGLALVLSFFVMSPTATRVYADALGPYLDDRIGQAEALERASGPVREFM 130
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
TR++DL+LF +++ + D I I +P+FMISEL +F +G + +P L
Sbjct: 131 LRQTRDQDLALFYEISATPRP----ASGDAIPMSIAVPAFMISELTTAFRMGLFLYVPLL 186
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++D++V+ I+M+MGMMM+PPT I+LP K+ FV+ DGW L+V L +SF
Sbjct: 187 LVDLLVSAILMSMGMMMVPPTLIALPVKIGLFVMADGWRLVVGALARSF 235
>gi|330809248|ref|YP_004353710.1| flagellar biosynthetic protein fliP [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327377356|gb|AEA68706.1| Putative flagellar biosynthetic protein fliP [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 240
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 82/210 (39%), Positives = 134/210 (63%), Gaps = 4/210 (1%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ V + T LS P L+I +T F R I+V S+ R +G+ PPN+V+I L++F
Sbjct: 32 NQIQSPVSIVALLTALSFLPFLVISLTTFTRNIVVLSLARQALGLQQTPPNIVLIVLSMF 91
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
+T + M+PTL+++ + GI+P + N++ A + P FM T E+DL L ++A
Sbjct: 92 LTLFAMAPTLEKAYDAGIKPFLANKVGLDGAALQGWVPIRDFMIRQTHEEDLRLIYELAK 151
Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
+ + L+P+FM+SEL+ +F+IGF+I LPFLIID++VA+I+M++GM+M
Sbjct: 152 DPLP----QAPEGLSPVKLVPAFMLSELKLAFQIGFMIFLPFLIIDLVVASILMSLGMIM 207
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
+PP +ISLP K++ F+LIDGW L+ + L++
Sbjct: 208 VPPITISLPLKIMLFLLIDGWGLIAQTLMR 237
>gi|78358622|ref|YP_390071.1| flagellar biosynthesis protein FliP [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78221027|gb|ABB40376.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 237
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 90/227 (39%), Positives = 136/227 (59%), Gaps = 4/227 (1%)
Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
+ + + I+ + T+LS+AP +++ VT F R IIVF +R MG+
Sbjct: 14 PDMQLTLSGGATEPEKVSVILEILFLLTVLSLAPAIMLTVTSFTRIIIVFHFVRQAMGLP 73
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
++PPN V+ SLA+FMT +M P + +QP ++ +I A+ EP FM +
Sbjct: 74 TLPPNQVLASLAIFMTVVIMMPVGKEINDRALQPYLDERIGFREALTVAQEPLREFMFKH 133
Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
TREKDLS+F + D + +L ++ISEL+ F IGFLI +PFL++D
Sbjct: 134 TREKDLSVFYGITGMERPR----NKDDVPTVMLAAGYVISELKTGFTIGFLIYIPFLVLD 189
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+VA+I++AMGMMMLPP +S+PFK++ FV++DGWSLL +LV SF+
Sbjct: 190 MVVASILLAMGMMMLPPMMVSMPFKILLFVMVDGWSLLTTSLVNSFM 236
>gi|37527633|ref|NP_930977.1| type III secretion system protein [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787068|emb|CAE16143.1| Type III secretion component protein SctR [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 217
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 68/191 (35%), Positives = 115/191 (60%), Gaps = 2/191 (1%)
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL--DRSIEMGIQPL 114
+M T F + +VFS+LR +G+ +PPN+ + LA+ +T YVM+P + +
Sbjct: 25 VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQDYLRQNEVS 84
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+N + ++ P+ F++ + + + + F+D + + + IL+P
Sbjct: 85 FSNAQSVDKFVEEGLTPYRNFLKQHIKPSERTFFIDSTRQIWPSQYADRLEPDSLLILLP 144
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
+F +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FVL+DGW
Sbjct: 145 AFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVLLDGW 204
Query: 235 SLLVENLVKSF 245
+ L LV S+
Sbjct: 205 TRLTHGLVISY 215
>gi|46445836|ref|YP_007201.1| type III secretion system protein [Candidatus Protochlamydia
amoebophila UWE25]
gi|46399477|emb|CAF22926.1| putative type III secretion inner membrane protein SctR [Candidatus
Protochlamydia amoebophila UWE25]
Length = 323
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 59/204 (28%), Positives = 115/204 (56%), Gaps = 11/204 (5%)
Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
P +++++T F + ++V S+LRT +G+ PPN +I +A ++ ++M PT + +
Sbjct: 119 PFIIMILTSFLKIVVVLSLLRTALGVQQAPPNQIINGVAFLLSLFIMYPTAIKMYDAAQT 178
Query: 113 PLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
+ + E+ + P +++ N+ + +LF + +
Sbjct: 179 AINQPNVPESFLSPGSSTYVIEVASAASGPMKEYLKRNSSSRHQALFYRLVYRGLPEDYR 238
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
++ +L+PS++ +L+ +FEIG LI +PF +ID++ + I++AMGMMML P +IS+
Sbjct: 239 ETLKPDDFIVLVPSYITGQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMMMLSPVTISM 298
Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
P K+ V++DGW++L+E LVK+F
Sbjct: 299 PLKLFLLVMLDGWTILIEGLVKTF 322
>gi|332669209|ref|YP_004452217.1| flagellar biosynthetic protein FliP [Cellulomonas fimi ATCC 484]
gi|332338247|gb|AEE44830.1| flagellar biosynthetic protein FliP [Cellulomonas fimi ATCC 484]
Length = 240
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 84/223 (37%), Positives = 136/223 (60%), Gaps = 6/223 (2%)
Query: 25 DVMNIPADLSISTWIVRTFGIFT--ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
D + + + T + +LS+AP L++M T F + +V S R +G+ VP
Sbjct: 18 DTVTVAVNGVNGTPSSSIVVLLAITLLSVAPALILMTTSFTKIFVVLSFTRNALGLQGVP 77
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
PN V+ LALF++ +VM+P + +G+QP ++ +T + A+ + P FM TRE
Sbjct: 78 PNQVLAGLALFLSLFVMAPVVSDINSVGVQPYLDGSLTFSQAVDVGSGPLREFMLGQTRE 137
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
+DL+L A + + + + L+P+F++SELR +F +GF+I +PFL+ID++V
Sbjct: 138 QDLALLTRAADQENP----ASPEDVPFATLVPAFLLSELRSAFIMGFVIFVPFLVIDLVV 193
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ +M+MGMMMLPP ISLPFK++ FVL+DGW L+V +LV S+
Sbjct: 194 SASLMSMGMMMLPPVMISLPFKILLFVLVDGWGLVVTSLVGSY 236
>gi|89069801|ref|ZP_01157136.1| flagellar biosynthetic protein FliP [Oceanicola granulosus
HTCC2516]
gi|89044602|gb|EAR50718.1| flagellar biosynthetic protein FliP [Oceanicola granulosus
HTCC2516]
Length = 246
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 86/220 (39%), Positives = 136/220 (61%), Gaps = 4/220 (1%)
Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
+++ D S++T ++ + T+LS+ P L IM+TCFP + V +ILR +G+ PPN+
Sbjct: 30 TLSLGEDGSLATRSIQLLLLVTLLSLVPGLAIMITCFPFIVTVLAILRQAIGLQQSPPNM 89
Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
+I++LALF+T++VM P + E G PL + + A PF FM L
Sbjct: 90 LIVTLALFLTYFVMEPVFRAAWEAGGAPLAAGEASLEEAFAGAIAPFRTFMAARVDPSAL 149
Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
+ D+ S+ +L+PSF++SE+ R+F++GFL+ LPFLIID++VA +
Sbjct: 150 ASLADLRGSAPPPAPEAAP----LSVLVPSFLLSEIERAFQVGFLLFLPFLIIDLVVAAV 205
Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+M+MGMMM+PP +SLPFK+ FFV+ DGW+L+ E LV+ +
Sbjct: 206 LMSMGMMMVPPAIVSLPFKLAFFVVADGWTLVAEALVRGY 245
>gi|282891201|ref|ZP_06299704.1| type III secretion inner membrane protein SctR [Parachlamydia
acanthamoebae str. Hall's coccus]
gi|281498894|gb|EFB41210.1| type III secretion inner membrane protein SctR [Parachlamydia
acanthamoebae str. Hall's coccus]
Length = 319
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 66/213 (30%), Positives = 125/213 (58%), Gaps = 11/213 (5%)
Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
+ TILS+ P +++++T F + +IV S+LR+ +G+ PPN +I +A ++ ++M PT+
Sbjct: 106 IVLTILSLLPFIIMILTSFLKIVIVLSLLRSALGVQQAPPNQIINGVAFMLSLFIMYPTV 165
Query: 104 DRSIEMGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
+ + + + + ++ EP +F++ N+ K +LF MA
Sbjct: 166 LKMYDAAQSVIESTRAPDSLVSVESSKYIVDVADASKEPLRMFLKRNSSVKHQALFYRMA 225
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ ++ I++P+++ S+L+ +FEIG LI +PF +ID++ + I++AMGMM
Sbjct: 226 YRILPENYRATLKPDDFMIVVPAYITSQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMM 285
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
ML P +IS+P K+ V++DGW+LL++ LV +F
Sbjct: 286 MLSPVTISMPLKLFLLVMLDGWTLLIDGLVNTF 318
>gi|300936103|ref|ZP_07151044.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1]
gi|300458752|gb|EFK22245.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1]
Length = 194
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 80/189 (42%), Positives = 120/189 (63%), Gaps = 6/189 (3%)
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P + + P
Sbjct: 5 VLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPIWLNIYDHAVVPFE 64
Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
N+QIT T A+ A P FM T +K ++ M + + + I++P+
Sbjct: 65 NDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKG------NAADQDLSIVVPA 118
Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
+++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK++ FVLIDGWS
Sbjct: 119 YVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWS 178
Query: 236 LLVENLVKS 244
L + L S
Sbjct: 179 LTIGTLTTS 187
>gi|154249381|ref|YP_001410206.1| flagellar biosynthesis protein FliP [Fervidobacterium nodosum
Rt17-B1]
gi|154153317|gb|ABS60549.1| flagellar biosynthetic protein FliP [Fervidobacterium nodosum
Rt17-B1]
Length = 251
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 82/247 (33%), Positives = 132/247 (53%), Gaps = 7/247 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I + F + + + + + + I T+L++AP +LI+ T
Sbjct: 7 ILFLIFLISSIFSQDEVPIPGISIQVTPTQQPRDLVATLEILLILTVLTLAPSILILFTS 66
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R IIVFS R +G VPPN V+I LAL +TF++M PT + + P M+ +IT
Sbjct: 67 FTRIIIVFSFTRNALGTRQVPPNQVLIGLALILTFFIMQPTWNEINTNALTPYMDGKITY 126
Query: 122 TTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
R FM N N +D + A ++TK + +L +F++
Sbjct: 127 QEFFSRTMASVRKFMINELVNHHNEDNVFTIANAL----KQNVTKIEEAPDSLLTAAFVL 182
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
E+ F++G LI +PF++IDM+VA+I++++GM+M+PP +SLPFKV+ FVL +GW ++
Sbjct: 183 GEVEIGFKMGILIYIPFIVIDMVVASILLSLGMIMIPPVLVSLPFKVLVFVLANGWESII 242
Query: 239 ENLVKSF 245
+LVKSF
Sbjct: 243 VSLVKSF 249
>gi|300871793|ref|YP_003786666.1| flagellar biosynthesis protein FliP [Brachyspira pilosicoli
95/1000]
gi|300689494|gb|ADK32165.1| flagellar biosynthesis protein, FliP [Brachyspira pilosicoli
95/1000]
Length = 266
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 86/252 (34%), Positives = 145/252 (57%), Gaps = 7/252 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ C FA + + ++ + + ++ + TILS++P ++IM T
Sbjct: 14 IVILCLFAPITLFAQTQIPIPTIGLNVTQAQTPQQVSLGLQVLFLLTILSLSPSIIIMTT 73
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IV S ++ + + PP +I+ L+LF+TF++M PTL + +QP +N I
Sbjct: 74 SFVRVSIVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLTQINNEALQPYLNGTIG 133
Query: 121 ETTAIQRVAEPFWVFMRNNTR----EKDLSLFMDMAHSSHRNTDITKNDH---IEYRILI 173
R +P +FM N+ R K L LF+ ++ ++ R DI + I +++
Sbjct: 134 VNDLYSRGIQPIRMFMFNSLRGENGMKSLDLFLSISDTNVRLRDIQSVEDLAKIPTIVVV 193
Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
P+F+I+EL +F++G + +PF++ID++VA+I+MAMGM+MLPP ISLP K+I FV +DG
Sbjct: 194 PAFIINELTIAFKMGIYLFVPFIVIDLVVASILMAMGMIMLPPIMISLPLKIILFVAVDG 253
Query: 234 WSLLVENLVKSF 245
W LL+ LV+SF
Sbjct: 254 WKLLILQLVQSF 265
>gi|27550057|gb|AAO18040.1| LscR [Photorhabdus luminescens]
Length = 217
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 69/191 (36%), Positives = 115/191 (60%), Gaps = 2/191 (1%)
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL--DRSIEMGIQPL 114
+M T F + +VFS+LR +G+ +PPN+ + LA+ +T YVM+P + +
Sbjct: 25 VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQDYLRQNEVS 84
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+N + ++ P+ F++ + + + + F+D + + + IL+P
Sbjct: 85 FSNAQSVEKFVEEGLTPYRNFLKQHIKPSERTFFIDSTRQIWPSQYADRLEPDSLLILLP 144
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
SF +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FVL+DGW
Sbjct: 145 SFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVLLDGW 204
Query: 235 SLLVENLVKSF 245
+ L LV S+
Sbjct: 205 TRLTHGLVISY 215
>gi|89897883|ref|YP_514993.1| type III secretion system protein [Chlamydophila felis Fe/C-56]
gi|89331255|dbj|BAE80848.1| type III secretion flagellar biosynthesis inner membrane protein
[Chlamydophila felis Fe/C-56]
Length = 305
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/234 (28%), Positives = 124/234 (52%), Gaps = 11/234 (4%)
Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
+ ++ + + I L+++P L++++T + + II +LR +G+ P
Sbjct: 71 PQENLSAGSFSDTYPDLTTQAIILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTP 130
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI-----------TETTAIQRVAEP 131
P+ V+ +AL ++ YVM PT + + N I T A+ + EP
Sbjct: 131 PSQVLNGIALILSIYVMFPTGVAMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEP 190
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
F+ NT + + F ++ + ++ I++P+F++ +++ +FEIG LI
Sbjct: 191 LRSFLIRNTPKSQIQSFYKISQKTFPPEIREHLTVSDFVIIVPAFIMGQIKNAFEIGVLI 250
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LPF +ID++ A +++AM MMML P SISLP K++ V++DGW+LL++ L+ SF
Sbjct: 251 YLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304
>gi|16082732|ref|NP_395178.1| type III secretion system protein [Yersinia pestis CO92]
gi|31795277|ref|NP_857738.1| type III secretion system protein [Yersinia pestis KIM]
gi|31795479|ref|NP_857933.1| type III secretion system protein [Yersinia pestis KIM]
gi|45478540|ref|NP_995367.1| type III secretion system protein [Yersinia pestis biovar Microtus
str. 91001]
gi|51593913|ref|YP_068480.1| type III secretion system protein [Yersinia pseudotuberculosis IP
32953]
gi|108793660|ref|YP_636810.1| type III secretion system protein [Yersinia pestis Antiqua]
gi|145597138|ref|YP_001154602.1| type III secretion system protein [Yersinia pestis Pestoides F]
gi|149192695|ref|YP_001293927.1| type III secretion system protein [Yersinia pestis CA88-4125]
gi|162417761|ref|YP_001604476.1| type III secretion system protein [Yersinia pestis Angola]
gi|165927798|ref|ZP_02223630.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165940058|ref|ZP_02228592.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011710|ref|ZP_02232608.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214467|ref|ZP_02240502.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401968|ref|ZP_02307454.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422404|ref|ZP_02314157.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167422439|ref|ZP_02314192.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167422881|ref|ZP_02314634.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426865|ref|ZP_02318618.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186897578|ref|YP_001874689.1| type III secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|229896860|ref|ZP_04512020.1| putative Yop secretion membrane protein [Yersinia pestis Pestoides
A]
gi|229900215|ref|ZP_04515351.1| putative Yop secretion membrane protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|294496839|ref|YP_003560536.1| needle complex export protein [Yersinia pestis Z176003]
gi|322836570|ref|YP_004210066.1| type III secretion apparatus protein YscR [Yersinia pestis Java 9]
gi|57015234|sp|P69980|YSCR_YERPE RecName: Full=Yop proteins translocation protein R
gi|57015235|sp|P69981|YSCR_YERPS RecName: Full=Yop proteins translocation protein R
gi|475123|gb|AAA27678.1| yscR [Yersinia pseudotuberculosis]
gi|2465659|gb|AAB72201.1| YscR [Yersinia pestis]
gi|2996237|gb|AAC62560.1| Yop proteins translocation protein R homolog [Yersinia pestis KIM
10]
gi|3822067|gb|AAC69787.1| type III secretion protein [Yersinia pestis KIM 10]
gi|5832464|emb|CAB54921.1| putative Yop secretion membrane protein [Yersinia pestis CO92]
gi|45357162|gb|AAS58558.1| putative Yop secretion membrane protein YscR [Yersinia pestis
biovar Microtus str. 91001]
gi|51591610|emb|CAF25414.1| yscR; putative Yop secretion membrane protein [Yersinia
pseudotuberculosis IP 32953]
gi|108782207|gb|ABG16262.1| Yop secretion membrane protein [Yersinia pestis Antiqua]
gi|145212906|gb|ABP42312.1| Yop secretion membrane protein [Yersinia pestis Pestoides F]
gi|148872353|gb|ABR14843.1| putative Yop secretion membrane protein [Yersinia pestis CA88-4125]
gi|162354781|gb|ABX88728.1| type III secretion apparatus protein YscR [Yersinia pestis Angola]
gi|165911968|gb|EDR30611.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920234|gb|EDR37535.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989317|gb|EDR41618.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204360|gb|EDR48840.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166958171|gb|EDR55192.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166958641|gb|EDR55662.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166958676|gb|EDR55697.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048696|gb|EDR60104.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054164|gb|EDR63991.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186700604|gb|ACC91232.1| Yop virulence translocation R [Yersinia pseudotuberculosis PB1/+]
gi|229686735|gb|EEO78815.1| putative Yop secretion membrane protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229700131|gb|EEO88170.1| putative Yop secretion membrane protein [Yersinia pestis Pestoides
A]
gi|262363850|gb|ACY60570.1| needle complex export protein [Yersinia pestis D106004]
gi|262364007|gb|ACY64344.1| needle complex export protein [Yersinia pestis D182038]
gi|294352427|gb|ADE66484.1| needle complex export protein [Yersinia pestis Z176003]
gi|317374480|gb|ADV16655.1| type III secretion inner membrane protein [Yersinia pestis]
gi|321161344|gb|ADW67050.1| type III secretion apparatus protein YscR [Yersinia pestis Java 9]
Length = 217
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 71/208 (34%), Positives = 126/208 (60%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++L++ P++ +M T F +F +VFS+LR +G+ +PPN+ + LA+ ++ YVM
Sbjct: 8 INLIIVLSLLTLLPLISVMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVM 67
Query: 100 SPTL--DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + + + N + P+ +F++ + + ++ S F+D
Sbjct: 68 APVGFATQDYLQANEVSLTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWP 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + IL+P+F +SEL R+FEIGFLI LPF++ID++++ I++AMGMMM+ P
Sbjct: 128 KQYADRLESDSLFILLPAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPM 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ISLPFK++ FVL+DGW+ L LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTRLTHGLVISY 215
>gi|332294877|ref|YP_004436800.1| flagellar biosynthetic protein FliP [Thermodesulfobium narugense
DSM 14796]
gi|332177980|gb|AEE13669.1| flagellar biosynthetic protein FliP [Thermodesulfobium narugense
DSM 14796]
Length = 248
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 92/245 (37%), Positives = 145/245 (59%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+ + L + + + ++ + ++ I TIL+ AP+LL+M T
Sbjct: 6 IFIFFIALLIIFNFNNISNAAPNINIDLGAGSPNDIANSLKVLFILTILAFAPLLLLMTT 65
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R +IVF LR +G+ + P +II L+LF+T ++M+P + + + P QIT
Sbjct: 66 SFLRLVIVFGFLRNALGIQQIIPGQIIIGLSLFLTLFIMTPIIQKIEQDAYTPYQKGQIT 125
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
AI+R P FM +NTR+ DLSL ++++ + N + I ++I +F++SE
Sbjct: 126 FQDAIERGYIPLRDFMLHNTRKSDLSLMIELSRTPRPN----SVNEIAPTVVISAFVLSE 181
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ SF IG +I LPF+IID+ VA+I+M+MGMMM+PP ISLP K++ FVL DGWSLLV++
Sbjct: 182 LKTSFIIGIVIYLPFVIIDLAVASILMSMGMMMIPPVMISLPLKILLFVLADGWSLLVKS 241
Query: 241 LVKSF 245
L+ SF
Sbjct: 242 LIASF 246
>gi|320175462|gb|EFW50561.1| Flagellar biosynthesis protein FliP [Shigella dysenteriae CDC
74-1112]
Length = 220
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 84/238 (35%), Positives = 128/238 (53%), Gaps = 29/238 (12%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
L + L FA+ +P + V+T T L+ P +L+M+T F R II
Sbjct: 10 VLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++
Sbjct: 70 VFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129
Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
A+P FM TRE DL LF +A++ + + + RIL+P+++ SE
Sbjct: 130 GAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSE------- 178
Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 179 ------------------LMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 218
>gi|62185507|ref|YP_220292.1| type III secretion system protein [Chlamydophila abortus S26/3]
gi|62148574|emb|CAH64346.1| putative type III export protein [Chlamydophila abortus S26/3]
Length = 305
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 11/230 (4%)
Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
++ + + I L+++P L++++T + + II +LR +G+ PP+ V
Sbjct: 75 LSEGSFSDTYPDLTTQAVILIFLALSPFLMMLLTSYLKIIITLVLLRNALGVQQTPPSQV 134
Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVF 135
+ +AL ++ YVM PT + + N I T A+ + EP F
Sbjct: 135 LNGIALILSIYVMFPTGVAMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSF 194
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
+ NT + + F ++ + ++ I+IP+F++ +++ +FEIG LI LPF
Sbjct: 195 LIRNTPKSQIQSFYKISQKTFPPEIREHMTASDFVIVIPAFIMGQIKNAFEIGVLIYLPF 254
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ID++ A +++AM MMML P SISLP K++ V++DGW+LL++ L+ SF
Sbjct: 255 FVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304
>gi|329943276|ref|ZP_08292050.1| hypothetical protein G5Q_0966 [Chlamydophila psittaci Cal10]
gi|332287854|ref|YP_004422755.1| secretion and cellular translocation protein R [Chlamydophila
psittaci 6BC]
gi|84785894|gb|ABC62086.1| secretion and cellular translocation protein R [Chlamydophila
psittaci]
gi|313848426|emb|CBY17430.1| putative type III export protein [Chlamydophila psittaci RD1]
gi|325506962|gb|ADZ18600.1| secretion and cellular translocation protein R [Chlamydophila
psittaci 6BC]
gi|328814823|gb|EGF84813.1| hypothetical protein G5Q_0966 [Chlamydophila psittaci Cal10]
gi|328915116|gb|AEB55949.1| type III secretion inner membrane protein SctR [Chlamydophila
psittaci 6BC]
Length = 305
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 11/230 (4%)
Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
++ + + I L+++P L++++T + + II +LR +G+ PP+ V
Sbjct: 75 LSEGSFSDTYPDLTTQAVILIFLALSPFLMMLLTSYLKIIITLVLLRNALGVQQTPPSQV 134
Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVF 135
+ +AL ++ YVM PT + + N I T A+ + EP F
Sbjct: 135 LNGIALILSIYVMFPTGVAMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSF 194
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
+ NT + + F ++ + ++ I+IP+F++ +++ +FEIG LI LPF
Sbjct: 195 LIRNTPKSQIQSFYKISQKTFPPEIREHMTASDFVIVIPAFIMGQIKNAFEIGVLIYLPF 254
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ID++ A +++AM MMML P SISLP K++ V++DGW+LL++ L+ SF
Sbjct: 255 FVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304
>gi|10955564|ref|NP_052405.1| type III secretion system protein [Yersinia enterocolitica]
gi|28373022|ref|NP_783679.1| type III secretion system protein [Yersinia enterocolitica]
gi|32470292|ref|NP_863527.1| type III secretion system protein [Yersinia enterocolitica]
gi|122815816|ref|YP_001004082.1| type III secretion system protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332163586|ref|YP_004424928.1| type III secretion system protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|14579350|gb|AAK69227.1|AF336309_22 YscR [Yersinia enterocolitica]
gi|4324351|gb|AAD16828.1| YscR [Yersinia enterocolitica W22703]
gi|23630594|gb|AAN37550.1| YscR [Yersinia enterocolitica]
gi|121663690|emb|CAL10052.1| putative type III secretion protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|310923235|emb|CBW54701.1| YscR, T3SS component [Yersinia enterocolitica (type O:8)]
gi|318608197|emb|CBY78171.1| type III secretion inner membrane protein
(YscR,SpaR,HrcR,EscR,homologous to flagellar export
components) [Yersinia enterocolitica subsp. palearctica
Y11]
gi|325667816|gb|ADZ44459.1| type III secretion system protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 217
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 69/191 (36%), Positives = 116/191 (60%), Gaps = 2/191 (1%)
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL--DRSIEMGIQPL 114
+M T F +F +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P + +
Sbjct: 25 VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS 84
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ N + P+ +F++ + + ++ S F+D + + IL+P
Sbjct: 85 LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP 144
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
+F +SEL R+FEIGFLI LPF++ID++++ I++AMGMMM+ P +ISLPFK++ FVL+DGW
Sbjct: 145 AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISLPFKLLLFVLLDGW 204
Query: 235 SLLVENLVKSF 245
+ L LV S+
Sbjct: 205 TRLTHGLVISY 215
>gi|115379117|ref|ZP_01466241.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella
aurantiaca DW4/3-1]
gi|115363900|gb|EAU63011.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella
aurantiaca DW4/3-1]
Length = 241
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 73/247 (29%), Positives = 141/247 (57%), Gaps = 9/247 (3%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M R+C A++++ P A + + + + +LS+ P ++M+T
Sbjct: 1 MTRFCLAAVWVL-PGWAAAGGETLAQASQAGNP------LTMMAVLAVLSLLPFAVVMLT 53
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F + +V S+ R+ MG PP +V+ LA ++ ++MSP + R E+G + + +
Sbjct: 54 SFSKIAVVLSLARSAMGTQQAPPTVVLTGLAAVLSAHIMSPVMARMYEVGREAARDAESG 113
Query: 121 ET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
A++R AEP F+ + ++ S F+++A + T+ + +++P+F+I
Sbjct: 114 AQILAAVERTAEPLRAFLVKHGSAEERSRFVELARELRPPEEATQVQEGDLFVVVPAFVI 173
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
+EL+ +F++GFL+ LPFL++DM++A I++A+GM L P+ +SLPFK++ FV +DGW LL
Sbjct: 174 TELKEAFQMGFLLFLPFLVLDMVIANILLALGMQSLSPSQVSLPFKILLFVTVDGWPLLA 233
Query: 239 ENLVKSF 245
+ L++ +
Sbjct: 234 QGLIQGY 240
>gi|289670559|ref|ZP_06491634.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 276
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SL +V + ++T + T +++ P +L+++T F R IV +LR +G G
Sbjct: 53 PSLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQ 112
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P N V++ L++F+T VM P + G+QP +NNQI +TA +P FM
Sbjct: 113 TPSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQI 172
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL F MA + D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 173 RETDLMTFAGMAG----DGKYAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 228
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF
Sbjct: 229 VVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 273
>gi|225619290|ref|YP_002720516.1| flagellar biosynthesis protein FliP [Brachyspira hyodysenteriae
WA1]
gi|225214109|gb|ACN82843.1| flagellar biosynthesis protein FliP [Brachyspira hyodysenteriae
WA1]
Length = 257
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 87/255 (34%), Positives = 146/255 (57%), Gaps = 14/255 (5%)
Query: 5 CFFALFLVTPELVFAK-------SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
F L L+ P +A+ ++ + + ++ + TILS++P ++I
Sbjct: 2 VFLVLCLLIPAAAYAQDNTKIPIPTIGLNVTQAQTPQQVSLGLQILFLLTILSLSPSIII 61
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
M T F R IV S ++ + + PP +I+ L+LF+TF++M PTL + +QP +N
Sbjct: 62 MTTSFIRVSIVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLTQVNNEALQPYLNG 121
Query: 118 QITETTAIQRVAEPFWVFMRNNTR----EKDLSLFMDMAHSSHRNTDITKNDH---IEYR 170
I R +P +FM N+ R K L LF+ ++++ R +I D I
Sbjct: 122 TIGVNELYSRGIQPIRMFMFNSLRGENGMKSLDLFLSISNTDIRLREIQTVDDLNRIPTI 181
Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
+++P+F+I+EL +F++G + +PF++ID++VA+I+MAMGM+MLPP ISLP K+I FV
Sbjct: 182 VVVPAFIINELTIAFKMGIYLFIPFIVIDLVVASILMAMGMIMLPPIMISLPLKIILFVA 241
Query: 231 IDGWSLLVENLVKSF 245
+DGW LL+ +V+SF
Sbjct: 242 VDGWKLLILQIVQSF 256
>gi|15835465|ref|NP_297224.1| type III secretion system protein [Chlamydia muridarum Nigg]
gi|270289654|ref|ZP_06195956.1| type III secretion system protein [Chlamydia muridarum Weiss]
gi|301337041|ref|ZP_07225243.1| type III secretion system protein [Chlamydia muridarum MopnTet14]
gi|8163334|gb|AAF73610.1| type III secretion inner membrane protein SctR [Chlamydia muridarum
Nigg]
Length = 311
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 15 ELVFAKSSLHDVMNIPADL--SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
+ V A+ L ++ + + I L+++P L++++T + + II +L
Sbjct: 67 QPVEAQDLLASQEDLSSGAFSDTYPDLTTQAVIILFLALSPFLVMLLTSYLKIIITLVLL 126
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ-----------PLMNNQITE 121
R +G+ PP+ V+ +AL ++ YVM PT + T
Sbjct: 127 RNALGVQQTPPSQVLNGIALILSIYVMFPTGMAMYNDAKKGIESDAVPRDLFSAEGAETV 186
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + EP F+ NNT + + F ++ + + ++ ++IP+F++ ++
Sbjct: 187 FVALNKSKEPLRSFLINNTPKPQIQSFYKISQKTFPPELRQQLTPSDFVVVIPAFIMGQI 246
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +FEIG LI LPF +ID++ A +++AM MMML P SISLP K++ V++DGW+LL+E L
Sbjct: 247 KNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLEGL 306
Query: 242 VKSF 245
+ SF
Sbjct: 307 MISF 310
>gi|285018170|ref|YP_003375881.1| flagellar biosynthetic protein flip [Xanthomonas albilineans GPE
PC73]
gi|283473388|emb|CBA15893.1| probable flagellar biosynthetic protein flip [Xanthomonas
albilineans]
Length = 271
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 93/245 (37%), Positives = 136/245 (55%), Gaps = 20/245 (8%)
Query: 17 VFAK----------------SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+A+ SL DV + ++T + T +++ P +L+++T
Sbjct: 28 AWAQAAHTVAATAQNSGPTLPSLPDVNVGKIGAQSVSLPLQTLLLMTAITLLPSMLLVLT 87
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IV +LR MG G P N V++ LALF+T VM P +++ + G+ P +N QI
Sbjct: 88 AFTRITIVLGLLRQAMGTGQTPSNQVLMGLALFLTALVMMPVWEKAWDHGMSPYLNGQID 147
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
TA +P FM RE DL F MA N + D I + +L+ SF+ SE
Sbjct: 148 FQTAWTLTTQPLRAFMLAQIRESDLMTFAGMAG----NGTYSSPDAIPFPVLVASFVTSE 203
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +FEIGFLI +PF+IID++VA+++M+MGMMM+ P IS PFK++ FVL+DGW L V
Sbjct: 204 LKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMMSPMLISAPFKILLFVLVDGWVLTVGT 263
Query: 241 LVKSF 245
L SF
Sbjct: 264 LAASF 268
>gi|224825752|ref|ZP_03698856.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002]
gi|224601976|gb|EEG08155.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002]
Length = 252
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%)
Query: 24 HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
N T + I T+L + P+L++M+T F RF+IV S+LR +G+ P
Sbjct: 32 LLSANAGGTPVDFTVKTQILIIMTLLGLLPVLMLMMTSFTRFVIVLSLLRQALGLQQGLP 91
Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
N ++ +AL +T VM P + P ++IT A+ +P FM T +
Sbjct: 92 NRLVTGVALILTLLVMRPVGLEVWNKAMLPFDQDKITMQQALDVAQQPISRFMLAQTSKA 151
Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
L+ ++ + + + + + + +F++SEL+ +F+IG ++ +PFL+ID++V+
Sbjct: 152 ALAQVAKLSGEEN----VARPQDHAFAVKLAAFVLSELKTAFQIGCMLFIPFLVIDLVVS 207
Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
+++MAMGMMML P ISLP K++ FVL+DGWSL V LV S
Sbjct: 208 SVLMAMGMMMLSPLVISLPLKLLMFVLVDGWSLTVNTLVTS 248
>gi|1648936|gb|AAB17684.1| putative [Sinorhizobium fredii]
Length = 249
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 69/192 (35%), Positives = 114/192 (59%), Gaps = 2/192 (1%)
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
++ T F + +V ++R +G ++PPN+V+ + AL +T +V +P +++ + P +
Sbjct: 52 VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRITDPRL 111
Query: 116 NNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
Q A + ++P ++ T E+ F+ + ++ IL+
Sbjct: 112 RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADDFAILV 171
Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+ FV IDG
Sbjct: 172 PSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDG 231
Query: 234 WSLLVENLVKSF 245
WS L+ LV S+
Sbjct: 232 WSRLMHGLVLSY 243
>gi|150260681|ref|ZP_01917409.1| putative type III secretion apparatus protein [Yersinia pestis
CA88-4125]
gi|153950632|ref|YP_001402768.1| type III secretion system protein [Yersinia pseudotuberculosis IP
31758]
gi|162418478|ref|YP_001608228.1| type III secretion system protein [Yersinia pestis Angola]
gi|165926714|ref|ZP_02222546.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis biovar Orientalis str. F1991016]
gi|166010511|ref|ZP_02231409.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166213909|ref|ZP_02239944.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis biovar Antiqua str. B42003004]
gi|167402211|ref|ZP_02307684.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167419036|ref|ZP_02310789.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167426164|ref|ZP_02317917.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|218927477|ref|YP_002345352.1| type III secretion system protein [Yersinia pestis CO92]
gi|229836525|ref|ZP_04456691.1| putative type III secretion apparatus protein [Yersinia pestis
Pestoides A]
gi|229840133|ref|ZP_04460292.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229842214|ref|ZP_04462369.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. India 195]
gi|229904047|ref|ZP_04519160.1| putative type III secretion apparatus protein [Yersinia pestis
Nepal516]
gi|294502343|ref|YP_003566405.1| putative type III secretion apparatus protein [Yersinia pestis
Z176003]
gi|51587964|emb|CAH19567.1| putative type III secretion apparatus protein, YscR/EscR [Yersinia
pseudotuberculosis IP 32953]
gi|115346088|emb|CAL18956.1| putative type III secretion apparatus protein [Yersinia pestis
CO92]
gi|149290089|gb|EDM40166.1| putative type III secretion apparatus protein [Yersinia pestis
CA88-4125]
gi|152962127|gb|ABS49588.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pseudotuberculosis IP 31758]
gi|162351293|gb|ABX85241.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis Angola]
gi|165921337|gb|EDR38561.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165990601|gb|EDR42902.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166204884|gb|EDR49364.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis biovar Antiqua str. B42003004]
gi|166963030|gb|EDR59051.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167048392|gb|EDR59800.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167054875|gb|EDR64677.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|229679817|gb|EEO75920.1| putative type III secretion apparatus protein [Yersinia pestis
Nepal516]
gi|229690524|gb|EEO82578.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. India 195]
gi|229696499|gb|EEO86546.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229706209|gb|EEO92217.1| putative type III secretion apparatus protein [Yersinia pestis
Pestoides A]
gi|262360423|gb|ACY57144.1| putative type III secretion apparatus protein [Yersinia pestis
D106004]
gi|262364373|gb|ACY60930.1| putative type III secretion apparatus protein [Yersinia pestis
D182038]
gi|294352802|gb|ADE63143.1| putative type III secretion apparatus protein [Yersinia pestis
Z176003]
Length = 216
Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats.
Identities = 74/215 (34%), Positives = 124/215 (57%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + + +LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL
Sbjct: 2 ELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T ++M+P ++N I Q P+ F++ NT + ++ F D+
Sbjct: 62 LTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGM
Sbjct: 122 VQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MM+ P ++SLPFK++ FVL+DGWSL++ LV S++
Sbjct: 182 MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL 216
>gi|330443947|ref|YP_004376933.1| YscR/HrcR family type III secretion apparatus protein
[Chlamydophila pecorum E58]
gi|328807057|gb|AEB41230.1| type III secretion apparatus protein, YscR/HrcR family
[Chlamydophila pecorum E58]
Length = 305
Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats.
Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 11/230 (4%)
Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
++ + + I L+++P L++++T + + II +LR +G+ PP+ V
Sbjct: 75 LSEGSFSDTYPDLTTQAVILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQV 134
Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVF 135
+ +AL ++ YVM PT + + + N I T A + EP F
Sbjct: 135 LNGIALILSIYVMFPTGAAMYKDAKKEIEANTIPRNLFTAEGAETVFVAFNKSKEPLRNF 194
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
+ NT + + F ++ + ++ I+IP+F++ +++ +FEIG +I LPF
Sbjct: 195 LIRNTPKAQIQSFYKISQKTFPAEIREHLSATDFVIVIPAFIMGQIKNAFEIGVMIYLPF 254
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ID++ A I++AM MMML P SISLP K++ V++DGW+LL++ L+ SF
Sbjct: 255 FVIDLVTANILVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304
>gi|254497497|ref|ZP_05110290.1| truncated flagellar biosynthesis protein FliP [Legionella
drancourtii LLAP12]
gi|254353312|gb|EET12054.1| truncated flagellar biosynthesis protein FliP [Legionella
drancourtii LLAP12]
Length = 189
Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats.
Identities = 83/191 (43%), Positives = 127/191 (66%), Gaps = 5/191 (2%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
+L+ +T F R IIV SILR +G+ P N V+I +ALFMT++VM+PT ++ + +QP
Sbjct: 1 MLMAMTAFTRIIIVLSILRQAIGLAQAPTNQVLIGIALFMTYFVMAPTFNKINDTALQPY 60
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ I A+ EP FM N TR+ DL+LF A+ + + ++IP
Sbjct: 61 LAETIKFPQAMANAQEPLRDFMLNQTRKNDLALFEKFANK-----QPASLNDVPMSVIIP 115
Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
+F+ SEL+ +F+IGF++ LPFLIID++V++++MAMGMMML P ISLPFK++ FV++DGW
Sbjct: 116 AFITSELKTAFQIGFILFLPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGW 175
Query: 235 SLLVENLVKSF 245
+L++ +L SF
Sbjct: 176 TLILGSLASSF 186
>gi|152990381|ref|YP_001356103.1| flagellar transport protein FliP [Nitratiruptor sp. SB155-2]
gi|151422242|dbj|BAF69746.1| flagellar transport protein FliP [Nitratiruptor sp. SB155-2]
Length = 236
Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 10/245 (4%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M ++ F+ P + + L ++ +FTILS+AP +LI +T
Sbjct: 1 MRKFLLLLPFIGIPLFAANEINALL-----DQLKNVDTTLKILALFTILSLAPAILITMT 55
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R +IV +LR +G+ PPN VII+L+LF+TF++M P D+ +QP M +++
Sbjct: 56 SFTRIVIVLGLLRQALGIPQSPPNQVIIALSLFLTFFIMKPVFDQIYVDAVQPYMQHKLN 115
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A++ P F+ NNT++++L LF+D+ T + I +L+P+F++SE
Sbjct: 116 DMQAVEAAMRPIKKFLVNNTQKEELKLFLDIN-----KTTPKDYNDISLSVLLPAFLVSE 170
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
++ +FEI F+I LPFL+IDM+VA+I+M+MGMMM+PP ISLPFK+I F+L DGW LL++
Sbjct: 171 IKIAFEIAFVIFLPFLVIDMLVASILMSMGMMMIPPMMISLPFKLILFILSDGWELLIKA 230
Query: 241 LVKSF 245
L+K +
Sbjct: 231 LIKGY 235
>gi|29840693|ref|NP_829799.1| type III secretion system protein [Chlamydophila caviae GPIC]
gi|29835043|gb|AAP05677.1| type III secretion inner membrane protein SctR [Chlamydophila
caviae GPIC]
Length = 303
Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats.
Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 11/230 (4%)
Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
++ + + I L+++P L++++T + + II +LR +G+ PP+ V
Sbjct: 73 LSAGSFSDTYPDLTTQAIILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQV 132
Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVF 135
+ +AL ++ YVM PT + + N I T A+ + EP F
Sbjct: 133 LNGIALILSIYVMFPTGVAMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSF 192
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
+ NT + + F ++ + ++ I+IP+F++ +++ +FEIG LI LPF
Sbjct: 193 LIRNTPKAQIQSFYKISQKTFPQEIREHMTASDFVIIIPAFIMGQIKNAFEIGVLIYLPF 252
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ID++ A +++AM MMML P SISLP K++ V++DGW+LL++ L+ SF
Sbjct: 253 FVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 302
>gi|291086629|ref|ZP_06356304.2| type III secretion apparatus protein, YscR/HrcR family [Citrobacter
youngae ATCC 29220]
gi|291067492|gb|EFE05601.1| type III secretion apparatus protein, YscR/HrcR family [Citrobacter
youngae ATCC 29220]
Length = 218
Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats.
Identities = 73/211 (34%), Positives = 125/211 (59%), Gaps = 2/211 (0%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ LS+ P +++ T F + IVFS+LR +G+ +PPN+ I LAL ++
Sbjct: 8 NQPYALIILLVALSVLPFIVVSCTSFIKLAIVFSLLRNALGIQQIPPNMSIYGLALILSL 67
Query: 97 YVMSPTLDRSIEMGI-QPLMNNQITETTAIQR-VAEPFWVFMRNNTREKDLSLFMDMAHS 154
++M+P + + +P+ N + + V +P+ VF++ NT+EK + F + H
Sbjct: 68 FIMAPVGMQINDNVQKEPISFNDVNLYERLDNSVLQPYLVFLQRNTKEKQIRYFSRIGHQ 127
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
+ + + +++P+F I++L +F+IG LI LPF+ ID+IV+ I++AMGMMM+
Sbjct: 128 TWPKKYQERLNKNSLFVMLPAFGITQLDEAFKIGLLIYLPFIAIDLIVSNILLAMGMMMV 187
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PT+ISLPFK++ F++ GW L+E LV SF
Sbjct: 188 SPTTISLPFKIMLFIIAGGWQFLIEKLVLSF 218
>gi|225871936|ref|YP_002753390.1| flagellar biosynthetic protein FliP [Acidobacterium capsulatum ATCC
51196]
gi|225794472|gb|ACO34562.1| flagellar biosynthetic protein FliP [Acidobacterium capsulatum ATCC
51196]
Length = 228
Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats.
Identities = 75/213 (35%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
++ + T++++ P +LI +T R ++VF LR +G + P N V++ L L
Sbjct: 20 PGNNSLPWTIVIVLTLITVLPAILISITPMVRLLVVFHFLRQALGTQTAPSNQVLLGLGL 79
Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
MT+++M P L + + ++P QI+ A++R P FM EKDL LF +
Sbjct: 80 MMTWFLMQPVLTQIDQQAVEPYRAGQISGMQALERATAPPKAFMLRYASEKDLELFAAAS 139
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
T + +IP++M+SEL+ FEIG ++ LPFL++DM+VA I ++GM
Sbjct: 140 MVKRPATRA----DLPLSAVIPAYMLSELKAGFEIGAILFLPFLLVDMVVAAITTSIGMF 195
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LPP IS P K++ FV++DGW LL +L+KSF
Sbjct: 196 QLPPVVISTPLKILLFVMVDGWHLLAASLLKSF 228
>gi|296125240|ref|YP_003632492.1| flagellar biosynthetic protein FliP [Brachyspira murdochii DSM
12563]
gi|296017056|gb|ADG70293.1| flagellar biosynthetic protein FliP [Brachyspira murdochii DSM
12563]
Length = 262
Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats.
Identities = 85/246 (34%), Positives = 142/246 (57%), Gaps = 14/246 (5%)
Query: 14 PELVFAK-------SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
P +A+ ++ + + ++ + TILS++P ++IM T F R
Sbjct: 16 PAAAYAQNNTQIPIPTIGLNVTQAQTPQQVSLGLQILFLLTILSLSPSIIIMTTSFIRVS 75
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
IV S ++ + + PP +I+ L+LF+TF++M PTL + +QP +N I
Sbjct: 76 IVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLTQVNNEALQPYLNGSIGVNELYS 135
Query: 127 RVAEPFWVFMRNNTR----EKDLSLFMDMAHSSHRNTDITKNDH---IEYRILIPSFMIS 179
R +P +FM N+ R K L LF+ ++ ++ R DI D I +++P+F+I+
Sbjct: 136 RGIQPIRMFMFNSLRGENGMKSLDLFLSISDTNIRLRDIQTVDDLNRIPTIVVVPAFIIN 195
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
EL +F++G + +PF++ID++VA+I+MAMGM+MLPP ISLP K+I FV +DGW LL+
Sbjct: 196 ELTIAFKMGIYLFIPFIVIDLVVASILMAMGMIMLPPIMISLPLKIILFVAVDGWKLLIL 255
Query: 240 NLVKSF 245
+V+SF
Sbjct: 256 QIVQSF 261
>gi|254992443|ref|ZP_05274633.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
J2-064]
Length = 258
Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 118/228 (51%), Gaps = 6/228 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + + V A+S L + D V F + T+LS++ +++M T
Sbjct: 15 IVIFAISLVVFWPGVNVHAESWLDSLGVNGTDG--VNSSVALFVLVTVLSLSASIVLMFT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + +
Sbjct: 73 HFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWS 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ ++ NT + D+++ + +TK + L+P+F++++
Sbjct: 133 ASKVWDETKPLLTKYVAENTYKHDINMMLKAEG----EDPVTKKEDAPLMALMPAFILTQ 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+ + F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F
Sbjct: 189 ITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVF 236
>gi|167567944|ref|ZP_02360860.1| type III secretion system protein [Burkholderia oklahomensis EO147]
gi|167573182|ref|ZP_02366056.1| type III secretion system protein [Burkholderia oklahomensis C6786]
Length = 216
Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats.
Identities = 62/213 (29%), Positives = 125/213 (58%), Gaps = 2/213 (0%)
Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
+ I I +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+
Sbjct: 3 QISDITGLLLIVVAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILA 62
Query: 95 TFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
+ YVM+P ++ + G Q + A+ EPF F+ +T+E++ F+ A
Sbjct: 63 SLYVMAPVGMQAAKSLDGQQLASQSSQALIQALSAAREPFRAFLEKHTQEREKRFFIRSA 122
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ ++ + +L P+F +SEL +F+IGFL+ + F+I+D+++A +++A+G+
Sbjct: 123 TVIWPKDEASRLSEHDLVVLAPAFALSELTDAFKIGFLLYITFIIVDLVIANVLLALGLN 182
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ PT++++PFK++ FV++DGWS L+ LV ++
Sbjct: 183 QVTPTNVAIPFKLLLFVVMDGWSALIHGLVMTY 215
>gi|325917745|ref|ZP_08179932.1| flagellar biosynthetic protein FliP [Xanthomonas vesicatoria ATCC
35937]
gi|325536044|gb|EGD07853.1| flagellar biosynthetic protein FliP [Xanthomonas vesicatoria ATCC
35937]
Length = 280
Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats.
Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+L +V + ++T + T +++ P +L+++T F R IV +LR +G G
Sbjct: 57 PNLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQ 116
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P N V++ LA+F+T VM P + G+QP +NNQI +TA +P FM
Sbjct: 117 TPSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQI 176
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL F MA + D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 177 RETDLMTFAGMAG----DGKYAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 232
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF
Sbjct: 233 VVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 277
>gi|90415342|ref|ZP_01223276.1| Flagella transport protein FliP family protein [marine gamma
proteobacterium HTCC2207]
gi|90332665|gb|EAS47835.1| Flagella transport protein FliP family protein [marine gamma
proteobacterium HTCC2207]
Length = 256
Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats.
Identities = 89/224 (39%), Positives = 147/224 (65%), Gaps = 4/224 (1%)
Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
+ ++++ + + + ++ + ++L++ P LL+M+T F R IIVFS+LR +G
Sbjct: 34 PVVNMIDDGSGGTKYSLTLQLLALMSVLTLLPSLLLMMTSFVRIIIVFSLLRQALGTAQT 93
Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
PPN V++ LALF+T ++MSP L + I P QI+ TA+ P FM N TR
Sbjct: 94 PPNQVLVGLALFLTLFIMSPVLTSVYDDAITPYFEEQISFETAVAAAEAPVRTFMLNQTR 153
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
E D+ +F+++A NT++ + + + L+P+F+ SEL+ +F IGFLI +PF+IID++
Sbjct: 154 ESDIGMFLEIA----DNTEVIEPADVPFLTLVPAFITSELKSAFSIGFLIYIPFVIIDLV 209
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
VA+++M+MGMMML P IS+PFK++ FVL+DGW+L++ +L SF
Sbjct: 210 VASVLMSMGMMMLSPMMISMPFKLMLFVLVDGWTLIMGSLTASF 253
>gi|323530325|ref|YP_004232477.1| Yop virulence translocation R [Burkholderia sp. CCGE1001]
gi|323387327|gb|ADX59417.1| Yop virulence translocation R [Burkholderia sp. CCGE1001]
Length = 216
Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 61/213 (28%), Positives = 124/213 (58%), Gaps = 2/213 (0%)
Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
+ I + +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ +
Sbjct: 3 QFSDITGLLIVIVAISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILV 62
Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
+ YVM+P ++++ + Q T+ EPF F++ +T E++ F+ A
Sbjct: 63 SLYVMAPVGMQAMQSMQGQAIAGQPTQALIQVFSAAREPFRTFLQKHTNEREKRFFIRSA 122
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + +L P+F ++EL +F+IGFL+ + F++ID+I+A +++AMG+
Sbjct: 123 NVVWPKDAAASLHENDLIVLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVLLAMGLN 182
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ PT++++PFK++ FV++DGWS L+ LV ++
Sbjct: 183 QVTPTNVAIPFKLLLFVVMDGWSTLIHGLVMTY 215
>gi|307725660|ref|YP_003908873.1| Yop virulence translocation R [Burkholderia sp. CCGE1003]
gi|307586185|gb|ADN59582.1| Yop virulence translocation R [Burkholderia sp. CCGE1003]
Length = 216
Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 61/213 (28%), Positives = 125/213 (58%), Gaps = 2/213 (0%)
Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
+ I + +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ +
Sbjct: 3 QFSDITGLLIVIVAISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILV 62
Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
+ YVM+P ++++ + Q T+ EPF F++ +T E++ F+ A
Sbjct: 63 SIYVMAPVGMQAMQSMQGQAIAGQPTQALIQVFSAAREPFRTFLQKHTNEREKRFFIRSA 122
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + + +L P+F ++EL +F+IGFL+ + F++ID+I+A +++AMG+
Sbjct: 123 NVVWPKEAASSLHENDLIVLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVLLAMGLN 182
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ PT++++PFK++ FV++DGWS L+ LV ++
Sbjct: 183 QVTPTNVAIPFKLLLFVVMDGWSTLIHGLVMTY 215
>gi|256370973|ref|YP_003108797.1| flagellar biosynthetic protein FliP [Acidimicrobium ferrooxidans
DSM 10331]
gi|256007557|gb|ACU53124.1| flagellar biosynthetic protein FliP [Acidimicrobium ferrooxidans
DSM 10331]
Length = 229
Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 84/232 (36%), Positives = 138/232 (59%), Gaps = 5/232 (2%)
Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
L+ A +SL S T V T+LS+AP LL++ T F ++V SI
Sbjct: 1 MSGLLLAATSLPSATLTVHAGSTPTASVVIILALTVLSLAPTLLVLFTGFVEIVVVLSIT 60
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R +G+ + PPN V+ LALF++ +VM+PTL + P ++ I+ A+ R P
Sbjct: 61 RNALGLSTTPPNQVLAGLALFLSLFVMAPTLGIVEHQAVLPYLHGHISAVVALDRAEGPI 120
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
++M +TR ++L+LF + H + ++P+F++SEL +F +GF+I
Sbjct: 121 KLWMLRHTRTQELALFDVVTHHAG-----VAPAAAPLDAVVPAFILSELHSAFVMGFIIY 175
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
+PFL+ID++V++++M++GMMMLPPT +SLPFK++ FVL+DGW+L+ L+ S
Sbjct: 176 VPFLVIDLVVSSVLMSLGMMMLPPTLVSLPFKLLLFVLVDGWTLVAHALLVS 227
>gi|313634413|gb|EFS01000.1| flagellar biosynthesis protein FliP [Listeria seeligeri FSL N1-067]
Length = 255
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 68/244 (27%), Positives = 129/244 (52%), Gaps = 6/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + F +F V A+S L + D V F + TILS++ +++M T
Sbjct: 15 IVIFVFSLIFFWPGTSVHAESWLDSLGVNGTDG--VNSSVALFVLVTILSLSASIVLMFT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + +
Sbjct: 73 HFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQTEEWS 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ ++ NT + D+++ + +TK + L+P+F++++
Sbjct: 133 ASKVWDETKPLLTKYVAENTYKHDINMMLKAEG----EEPVTKKEDAPLMALMPAFILTQ 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ + F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+
Sbjct: 189 ITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNM 248
Query: 241 LVKS 244
+ ++
Sbjct: 249 IFQT 252
>gi|317406210|gb|EFV86458.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans
C54]
Length = 168
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 79/170 (46%), Positives = 114/170 (67%), Gaps = 4/170 (2%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
MG PPN V+I LALF+TFY MSP D+ +PL I A++R A P F
Sbjct: 1 MGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYKPLSEGSIQFEAAVERAAGPLRTF 60
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
M + TRE DL+LF ++A + + RIL+P+F+ SEL+ +F+IGF I +PF
Sbjct: 61 MLHQTRENDLALFANLAKQP----ALEDPSQVPLRILVPAFITSELKTAFQIGFTIFIPF 116
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L +SF
Sbjct: 117 LIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLMGSLAQSF 166
>gi|166712022|ref|ZP_02243229.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 281
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SL +V + ++T + T +++ P +L+++T F R IV +LR +G G
Sbjct: 58 PSLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQ 117
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P N V++ L++F+T VM P + G+QP +NNQI +TA +P FM
Sbjct: 118 TPSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQI 177
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL F MA + D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 178 RETDLMTFAGMAG----DGKYVGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 233
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF
Sbjct: 234 VVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278
>gi|58582234|ref|YP_201250.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84624127|ref|YP_451499.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|58426828|gb|AAW75865.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84368067|dbj|BAE69225.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 281
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SL +V + ++T + T +++ P +L+++T F R IV +LR +G G
Sbjct: 58 PSLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQ 117
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P N V++ L++F+T VM P + G+QP +NNQI +TA +P FM
Sbjct: 118 TPSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQI 177
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL F MA + D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 178 RETDLMTFAGMAG----DGKYVGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 233
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF
Sbjct: 234 VVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278
>gi|320107033|ref|YP_004182623.1| flagellar biosynthetic protein FliP [Terriglobus saanensis SP1PR4]
gi|319925554|gb|ADV82629.1| flagellar biosynthetic protein FliP [Terriglobus saanensis SP1PR4]
Length = 271
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 76/234 (32%), Positives = 129/234 (55%), Gaps = 4/234 (1%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
T A ++ + S T+L++ P +++ +T R ++VF
Sbjct: 42 ATGASTGAGGITVRSLSDELNSSRIGSSWVIALSLTLLTLLPAIILAMTPMVRLLVVFHF 101
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
LR +G + P N V+++L L MT++++ P + + + I P IT + R + P
Sbjct: 102 LRQALGTQTAPSNQVLMALGLMMTWFLIQPVVVQIEQQAIAPYRAETITLEECMDRTSVP 161
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
++ REKDL+LF S T + I RI+IP++++SEL+ F+IG ++
Sbjct: 162 IKQYLLKYAREKDLALFASAGMSIRPQTRL----DIPLRIVIPAYILSELKAGFQIGAVL 217
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LPFL+ID++VA+I ++GM+ LPP IS P K++ FV++DGW+LL +L+KSF
Sbjct: 218 FLPFLLIDLVVASITTSVGMLQLPPVVISTPIKILLFVMVDGWNLLAGSLLKSF 271
>gi|311232389|gb|ADP85243.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris RCH1]
Length = 232
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 86/235 (36%), Positives = 141/235 (60%), Gaps = 4/235 (1%)
Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
+ + V + + + + + + T+LS+AP +++ VT F R IIVF
Sbjct: 1 MAAQDVVMPTMQLTLAAGRTEPEKVSLTLEILFMLTVLSLAPAIMLTVTSFTRIIIVFHF 60
Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
+R +G+ ++PP+ V+ SLA+FMT +M+P + +QP + +I A+++ P
Sbjct: 61 VRQALGVQALPPSQVLASLAIFMTVVIMTPVGKEINDNALQPYLREEIGFNEALKKAEAP 120
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
FM +TREKDLS+F + + D + +L ++ISEL+ F IGFLI
Sbjct: 121 MRTFMFKHTREKDLSVFYAVTKMEQPRSK----DDVPTIMLAAGYVISELKTGFTIGFLI 176
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+PFLI+DM++++I++AMGMMMLPP +S+PFK++ FV++DGW LLV +LV SF+
Sbjct: 177 YIPFLILDMVISSILLAMGMMMLPPMMVSMPFKLLLFVMVDGWGLLVGSLVNSFM 231
>gi|188991607|ref|YP_001903617.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
campestris str. B100]
gi|167733367|emb|CAP51568.1| Flagellar biosynthetic protein fliP [Xanthomonas campestris pv.
campestris]
Length = 280
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+L +V + ++T + T +++ P +L+++T F R IV +LR +G G
Sbjct: 57 PTLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQ 116
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P N V++ LA+F+T VM P + G+QP +NNQI +TA +P FM
Sbjct: 117 TPSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQI 176
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL F MA + D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 177 RETDLMTFAGMAG----DGKYAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 232
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF
Sbjct: 233 VVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 277
>gi|294664068|ref|ZP_06729470.1| flagellar biosynthesis pathway component FliP [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
gi|292606171|gb|EFF49420.1| flagellar biosynthesis pathway component FliP [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
Length = 281
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 89/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SL +V + ++T + T +++ P +L+++T F R IV +LR +G G
Sbjct: 58 PSLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQ 117
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P N V++ LA+F+T VM P + G+QP +NNQI +TA +P FM
Sbjct: 118 TPSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQI 177
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL F MA + D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 178 RETDLMTFAGMAG----DGKYAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 233
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF
Sbjct: 234 VVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278
>gi|78047544|ref|YP_363719.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78035974|emb|CAJ23665.1| flagellar biosynthesis pathway component FliP [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 281
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 89/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SL +V + ++T + T +++ P +L+++T F R IV +LR +G G
Sbjct: 58 PSLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQ 117
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P N V++ LA+F+T VM P + G+QP +NNQI +TA +P FM
Sbjct: 118 TPSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQI 177
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL F MA + D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 178 RETDLMTFAGMAG----DGKYAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 233
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF
Sbjct: 234 VVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278
>gi|323972752|gb|EGB67952.1| flagellar biosynthetic protein FliP [Escherichia coli TA007]
Length = 221
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 70/196 (35%), Positives = 110/196 (56%), Gaps = 5/196 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ L+L+TP L FA+ +P + V+T T L+ P +L+M+T
Sbjct: 4 LLSVAPVLLWLITP-LAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMT 62
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+
Sbjct: 63 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKIS 122
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A+++ A+P FM TRE DL LF +A++ + + + RIL+P+++ SE
Sbjct: 123 MQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSE 178
Query: 181 LRRSFEIGFLIILPFL 196
L+ +F+IGF I PF
Sbjct: 179 LKTAFQIGFTIFHPFF 194
>gi|46906927|ref|YP_013316.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
serotype 4b str. F2365]
gi|47091639|ref|ZP_00229435.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str. 4b
H7858]
gi|226223307|ref|YP_002757414.1| flagellar biosynthesic protein FliP [Listeria monocytogenes
Clip81459]
gi|254824044|ref|ZP_05229045.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
J1-194]
gi|254853119|ref|ZP_05242467.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
R2-503]
gi|254932044|ref|ZP_05265403.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
HPB2262]
gi|255521627|ref|ZP_05388864.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
J1-175]
gi|300764487|ref|ZP_07074480.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
N1-017]
gi|46880193|gb|AAT03493.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
serotype 4b str. F2365]
gi|47019958|gb|EAL10695.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str. 4b
H7858]
gi|225875769|emb|CAS04472.1| Putative flagellar biosynthesic protein FliP [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258606470|gb|EEW19078.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
R2-503]
gi|293583597|gb|EFF95629.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
HPB2262]
gi|293593273|gb|EFG01034.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
J1-194]
gi|300514841|gb|EFK41895.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
N1-017]
gi|328467245|gb|EGF38325.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 1816]
gi|328475641|gb|EGF46390.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 220]
gi|332311101|gb|EGJ24196.1| Flagellar biosynthesis protein FliP [Listeria monocytogenes str.
Scott A]
Length = 255
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 65/244 (26%), Positives = 127/244 (52%), Gaps = 6/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + + V A+S L + D V F + T+LS++ +++M T
Sbjct: 15 IVIFAISLVVFWPGVNVHAESWLDSLGVNGTDG--VNSSVALFVLVTVLSLSASIVLMFT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + +
Sbjct: 73 HFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWS 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ ++ NT + D+++ + +TK + L+P+F++++
Sbjct: 133 ASKVWDETKPLLTKYVAENTYKHDINMMLKAEG----EDPVTKKEDAPLMALMPAFILTQ 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ + F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+
Sbjct: 189 ITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNM 248
Query: 241 LVKS 244
+ ++
Sbjct: 249 IFQT 252
>gi|289666110|ref|ZP_06487691.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 281
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SL +V + ++T + T +++ P +L+++T F R IV +LR +G G
Sbjct: 58 PSLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQ 117
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P N V++ L++F+T VM P + G+QP +NNQI +TA +P FM
Sbjct: 118 TPSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQI 177
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL F MA + D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 178 RETDLMTFAGMAG----DGKYAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 233
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF
Sbjct: 234 VVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278
>gi|315301906|ref|ZP_07872919.1| flagellar biosynthesis protein FliP [Listeria ivanovii FSL F6-596]
gi|313629722|gb|EFR97842.1| flagellar biosynthesis protein FliP [Listeria ivanovii FSL F6-596]
Length = 255
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 67/241 (27%), Positives = 127/241 (52%), Gaps = 6/241 (2%)
Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
+ F +F V A+S L + D V F + T+LS++ +++M T F
Sbjct: 18 FVFSLIFFWPGTSVHAESWLDSLGVNGTDG--VNSSVALFVLVTVLSLSASIVLMFTHFT 75
Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + + +
Sbjct: 76 YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQTEEWSASK 135
Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
++ NT + D+++ + +TK + L+P+F+++++ +
Sbjct: 136 VWDETKPLLTKYVAENTYKHDINMMLKAEG----EKPVTKKEDAPLMALMPAFILTQITQ 191
Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + +
Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251
Query: 244 S 244
+
Sbjct: 252 T 252
>gi|94496750|ref|ZP_01303325.1| Type III secretory pathway, component EscR [Sphingomonas sp. SKA58]
gi|94423763|gb|EAT08789.1| Type III secretory pathway, component EscR [Sphingomonas sp. SKA58]
Length = 216
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 73/205 (35%), Positives = 127/205 (61%), Gaps = 1/205 (0%)
Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
+ ++++AP +MVT F + ++V S+LR +G+ VPPN+V+ +AL ++ YVM PT
Sbjct: 12 LVVVVLIALAPFFAVMVTSFTKIVVVLSLLRNALGLQQVPPNVVLNGMALVLSVYVMYPT 71
Query: 103 LDRSIEMGIQPLMNNQITET-TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
+ + Q + +Q +E +A R EP F+ ++ + + F+ + +
Sbjct: 72 MQQMAAASGQQAVPSQTSEIFSAADRAKEPLRAFLIKHSAADERAFFLRTQQRVAKQSGT 131
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
++ +++P+F++ EL +F+IGFLI LPFL+ID++++ I++AMGMMML P +ISL
Sbjct: 132 QAASATDFIVVVPAFVVRELTVAFQIGFLIFLPFLVIDLVISNILLAMGMMMLSPVTISL 191
Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
PFK++ FVL+DGW L LV S++
Sbjct: 192 PFKILLFVLVDGWVKLSHGLVLSYV 216
>gi|289433954|ref|YP_003463826.1| flagellar biosynthesis protein FliP [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170198|emb|CBH26738.1| flagellar biosynthesis protein FliP [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|313639091|gb|EFS04067.1| flagellar biosynthesis protein FliP [Listeria seeligeri FSL S4-171]
Length = 255
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 68/244 (27%), Positives = 129/244 (52%), Gaps = 6/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + F +F V A+S L + D V F + TILS++ +++M T
Sbjct: 15 VVIFVFSLIFFWPGTSVHAESWLDSLGVNGTDG--VNSSVALFVLVTILSLSASIVLMFT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + +
Sbjct: 73 HFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQTEEWS 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ ++ NT + D+++ + +TK + L+P+F++++
Sbjct: 133 ASKVWDETKPLLTKYVAENTYKHDINMMLKAEG----EKPVTKKEDAPLMALMPAFILTQ 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ + F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+
Sbjct: 189 ITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNM 248
Query: 241 LVKS 244
+ ++
Sbjct: 249 IFQT 252
>gi|238764052|ref|ZP_04625007.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
kristensenii ATCC 33638]
gi|238697723|gb|EEP90485.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
kristensenii ATCC 33638]
Length = 216
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 76/215 (35%), Positives = 122/215 (56%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + + ILS+ P+L++M T F + IVFS+LR +G+ VPPN+ I LAL
Sbjct: 2 ELLNSSSQLIVLLFILSLLPLLVVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T ++M+P + N I + P+ F++ NT + ++ F D+
Sbjct: 62 LTIFIMAPVGLDVHARLQDEPLPNDIGALLHHIDESALGPYRDFLQRNTDAEQVNFFNDI 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGM
Sbjct: 122 VKTKWPERYRDTIKPNSLLILMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MM+ P +ISLPFK++ F+LIDGW LL+ LV S++
Sbjct: 182 MMVSPITISLPFKLLIFILIDGWGLLLGQLVGSYL 216
>gi|53722431|ref|YP_111416.1| type III secretion system protein [Burkholderia pseudomallei
K96243]
gi|76818756|ref|YP_335589.1| type III secretion system protein [Burkholderia pseudomallei 1710b]
gi|126444935|ref|YP_001062995.1| type III secretion system protein [Burkholderia pseudomallei 668]
gi|126456985|ref|YP_001075942.1| type III secretion system protein [Burkholderia pseudomallei 1106a]
gi|134282501|ref|ZP_01769205.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 305]
gi|167724022|ref|ZP_02407258.1| type III secretion system protein [Burkholderia pseudomallei DM98]
gi|167742991|ref|ZP_02415765.1| type III secretion system protein [Burkholderia pseudomallei 14]
gi|167820162|ref|ZP_02451842.1| type III secretion system protein [Burkholderia pseudomallei 91]
gi|167828537|ref|ZP_02460008.1| type III secretion system protein [Burkholderia pseudomallei 9]
gi|167849995|ref|ZP_02475503.1| type III secretion system protein [Burkholderia pseudomallei B7210]
gi|167898604|ref|ZP_02486005.1| type III secretion system protein [Burkholderia pseudomallei 7894]
gi|167906946|ref|ZP_02494151.1| type III secretion system protein [Burkholderia pseudomallei NCTC
13177]
gi|167915305|ref|ZP_02502396.1| type III secretion system protein [Burkholderia pseudomallei 112]
gi|167923138|ref|ZP_02510229.1| type III secretion system protein [Burkholderia pseudomallei
BCC215]
gi|217425350|ref|ZP_03456844.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 576]
gi|226199064|ref|ZP_03794626.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei Pakistan 9]
gi|237510373|ref|ZP_04523088.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei MSHR346]
gi|242313556|ref|ZP_04812573.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1106b]
gi|254183805|ref|ZP_04890397.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1655]
gi|254186719|ref|ZP_04893235.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei Pasteur 52237]
gi|254194021|ref|ZP_04900453.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei S13]
gi|254264816|ref|ZP_04955681.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1710a]
gi|254301600|ref|ZP_04969044.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 406e]
gi|4206078|gb|AAD11411.1| SctR [Burkholderia pseudomallei]
gi|52212845|emb|CAH38879.1| putative type III secretion-associated protein [Burkholderia
pseudomallei K96243]
gi|76583229|gb|ABA52703.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1710b]
gi|126224426|gb|ABN87931.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 668]
gi|126230753|gb|ABN94166.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1106a]
gi|134246058|gb|EBA46148.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 305]
gi|157810966|gb|EDO88136.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 406e]
gi|157934403|gb|EDO90073.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei Pasteur 52237]
gi|169650772|gb|EDS83465.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei S13]
gi|184214338|gb|EDU11381.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1655]
gi|217391601|gb|EEC31629.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 576]
gi|225928839|gb|EEH24864.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei Pakistan 9]
gi|235002578|gb|EEP52002.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei MSHR346]
gi|242136795|gb|EES23198.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1106b]
gi|254215818|gb|EET05203.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1710a]
Length = 216
Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
+ I + +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ +
Sbjct: 3 QFSDITGLLLVVIAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILV 62
Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
+ YVM+P ++ + + + +Q ++ A+ EPF F+ +T E++ F+ A
Sbjct: 63 SLYVMAPIGMQAAKALDEQQLASQSSQAIIQALGSAREPFRSFLEKHTPEREKRFFIRSA 122
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + + + +L P+F +SEL +F+IGFL+ + F+I+D+++A +++A+G+
Sbjct: 123 SVIWPKEEASLLNERDLIVLAPAFALSELTDAFKIGFLLYIVFIIVDLVIANVLLALGLN 182
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ PT++++PFK++ FV +DGWS L+ LV ++
Sbjct: 183 QITPTNVAIPFKLLLFVAMDGWSTLIHGLVMTY 215
>gi|238755993|ref|ZP_04617318.1| Surface presentation of antigens protein spaP [Yersinia ruckeri
ATCC 29473]
gi|238705782|gb|EEP98174.1| Surface presentation of antigens protein spaP [Yersinia ruckeri
ATCC 29473]
Length = 218
Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 57/209 (27%), Positives = 118/209 (56%), Gaps = 2/209 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
V I + ++ P ++ TCF + IV ++R MG+ +P N+ + +AL ++ +VM
Sbjct: 5 VPLIAIVALTTLLPFIIAAGTCFLKISIVLIMVRNAMGVQQIPSNIALNGIALLLSLFVM 64
Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P ++ + + + + + + + +++ + + LS F +
Sbjct: 65 MPVINDINDYVREQKVEMTDVDSVNRFVDGGLGGYKSYLKKYSDPELLSFFESVQRGRSE 124
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + + + L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+GMMM+ P
Sbjct: 125 HEIDVEKEEVTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMSPV 184
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+IS+P K+I FV +DGW+L+ + LV +I
Sbjct: 185 TISVPIKLILFVAMDGWALISKGLVMQYI 213
>gi|188576794|ref|YP_001913723.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188576986|ref|YP_001913915.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188521246|gb|ACD59191.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188521438|gb|ACD59383.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 281
Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SL +V + ++T + T +++ P +L+++T F R IV +LR +G G
Sbjct: 58 PSLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQ 117
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P N V++ L++F+T VM P + G+QP +NNQI +TA +P FM
Sbjct: 118 TPSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQI 177
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL F MA + D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 178 RETDLMTFAGMAG----DGKYVGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 233
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF
Sbjct: 234 VVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278
>gi|16760492|ref|NP_456109.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141748|ref|NP_805090.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213416630|ref|ZP_03349774.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213426016|ref|ZP_03358766.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213581367|ref|ZP_03363193.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213647287|ref|ZP_03377340.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213854184|ref|ZP_03382716.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289827206|ref|ZP_06545929.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25316659|pir||AI0696 probable type III secretion protein yscR [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16502788|emb|CAD01946.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137376|gb|AAO68939.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 215
Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 77/213 (36%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S+ ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + AL
Sbjct: 2 SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMA 152
++ ++M PTL E + T+ + P+ F++ N+ EK+ + F ++
Sbjct: 62 LSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLI 121
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMM
Sbjct: 122 KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +ISLPFK++ F+L GW L + LV+SF
Sbjct: 182 MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214
>gi|325920564|ref|ZP_08182486.1| flagellar biosynthetic protein FliP [Xanthomonas gardneri ATCC
19865]
gi|325548957|gb|EGD19889.1| flagellar biosynthetic protein FliP [Xanthomonas gardneri ATCC
19865]
Length = 279
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SL +V + ++T + T +++ P +L+++T F R IV +LR +G G
Sbjct: 56 PSLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQ 115
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P N V++ L++F+T VM P + G+ P +NNQI +TA +P FM
Sbjct: 116 TPSNQVLLGLSMFLTALVMMPVWQKMWGAGLSPYLNNQIDFSTAWTLTTQPLRAFMLAQI 175
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL F MA + D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 176 RETDLMTFAGMAG----DGKYAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 231
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF
Sbjct: 232 VVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 276
>gi|116872065|ref|YP_848846.1| flagellar biosynthesis protein FliP [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116740943|emb|CAK20063.1| flagellar biosynthesis protein FliP [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 255
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 68/244 (27%), Positives = 128/244 (52%), Gaps = 6/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + +F V A+S L + D V F + T+LS++ +++M T
Sbjct: 15 VVIFAISLIFFWPGVNVHAESWLDSLGVNGTDG--VNSSVALFVLVTVLSLSASIVLMFT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + T
Sbjct: 73 HFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWT 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ ++ NT + D+++ + ITK + L+P+F++++
Sbjct: 133 ASKVWDETKPLLTKYVAENTYKHDINMMLKAEG----EDPITKKEDAPLMALMPAFILTQ 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ + F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+
Sbjct: 189 ITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNM 248
Query: 241 LVKS 244
+ ++
Sbjct: 249 IFQT 252
>gi|149184188|ref|ZP_01862506.1| flagellar biosynthetic protein FliP [Erythrobacter sp. SD-21]
gi|148831508|gb|EDL49941.1| flagellar biosynthetic protein FliP [Erythrobacter sp. SD-21]
Length = 255
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 80/188 (42%), Positives = 126/188 (67%), Gaps = 4/188 (2%)
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
M+T F R I+V +ILR +G+ PPN V+I ++LF++ ++M+PTL+R E I P
Sbjct: 71 MMTSFTRIIVVLAILRQALGLQQSPPNQVLIGISLFLSLFIMTPTLERVNEAAIAPYSAG 130
Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
+I AI+R + F FM TRE DL +F D+A + + IL+P+F+
Sbjct: 131 EIGAEVAIERAGDQFHAFMIRQTREYDLEMFADIAG----AGQFASPQDVPFSILLPAFV 186
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
SEL+ +F+IGF++ LPFL+ID++V++++M++GMMM+ P +SLPFK++ FVL+DGW+LL
Sbjct: 187 TSELKTAFQIGFMLFLPFLVIDLVVSSVLMSLGMMMMSPMMVSLPFKLLLFVLVDGWALL 246
Query: 238 VENLVKSF 245
+ +L SF
Sbjct: 247 MGSLAASF 254
>gi|47095241|ref|ZP_00232852.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str.
1/2a F6854]
gi|224498759|ref|ZP_03667108.1| flagellar biosynthesis protein FliP [Listeria monocytogenes Finland
1988]
gi|254829333|ref|ZP_05234020.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
N3-165]
gi|254900088|ref|ZP_05260012.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J0161]
gi|254911359|ref|ZP_05261371.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J2818]
gi|254935686|ref|ZP_05267383.1| flagellar biosynthesis protein FliP [Listeria monocytogenes F6900]
gi|284801006|ref|YP_003412871.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
08-5578]
gi|284994148|ref|YP_003415916.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
08-5923]
gi|47016312|gb|EAL07234.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str.
1/2a F6854]
gi|258601745|gb|EEW15070.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
N3-165]
gi|258608268|gb|EEW20876.1| flagellar biosynthesis protein FliP [Listeria monocytogenes F6900]
gi|284056568|gb|ADB67509.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
08-5578]
gi|284059615|gb|ADB70554.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
08-5923]
gi|293589295|gb|EFF97629.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J2818]
Length = 255
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 65/244 (26%), Positives = 127/244 (52%), Gaps = 6/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + + V A+S L + D V F + T+LS++ +++M T
Sbjct: 15 IVIFAISLVVFWPGVNVHAESWLDSLGVNGTDG--VNSSVALFVLVTVLSLSASIVLMFT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + +
Sbjct: 73 HFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWS 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ ++ NT + D+++ + +TK + L+P+F++++
Sbjct: 133 ASKVWDETQPLLTKYVAENTYKHDINMMLKAEG----EDPVTKKEDAPLMALMPAFILTQ 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ + F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+
Sbjct: 189 ITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNM 248
Query: 241 LVKS 244
+ ++
Sbjct: 249 IFQT 252
>gi|16799759|ref|NP_470027.1| flagellar biosynthesis protein FliP [Listeria innocua Clip11262]
gi|16413136|emb|CAC95916.1| lin0684 [Listeria innocua Clip11262]
gi|313620096|gb|EFR91601.1| flagellar biosynthesis protein FliP [Listeria innocua FSL S4-378]
Length = 255
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 128/244 (52%), Gaps = 6/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + +F V A+S L + D V F + T+LS++ +++M T
Sbjct: 15 VVIFAISLVFFWPGVNVHAESWLDSLGVNGTDG--VNSSVALFVLVTVLSLSASIVLMFT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + +
Sbjct: 73 HFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWS 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ ++ NT + D+++ + +TK + L+P+F++++
Sbjct: 133 ASKVWDETQPLLTKYVAENTYKHDINMMLKAEG----EDPVTKKEDAPLMALMPAFILTQ 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ + F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+
Sbjct: 189 ITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNM 248
Query: 241 LVKS 244
+ ++
Sbjct: 249 IFQT 252
>gi|313624918|gb|EFR94826.1| flagellar biosynthesis protein FliP [Listeria innocua FSL J1-023]
Length = 255
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 128/244 (52%), Gaps = 6/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + +F V A+S L + D V F + T+LS++ +++M T
Sbjct: 15 VVIFAISLVFFWPGVNVHAESWLDSLGVNGTDG--VNSSVALFVLVTVLSLSASIVLMFT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + +
Sbjct: 73 HFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWS 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ ++ NT + D+++ + +TK + L+P+F++++
Sbjct: 133 ASKVWDETQPLLTKYVAENTYKHDINMMLKAEG----EEPVTKKEDAPLMALMPAFILTQ 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ + F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+
Sbjct: 189 ITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNM 248
Query: 241 LVKS 244
+ ++
Sbjct: 249 IFQT 252
>gi|21231364|ref|NP_637281.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768583|ref|YP_243345.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
campestris str. 8004]
gi|21113027|gb|AAM41205.1| flagellar biosynthetic protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573915|gb|AAY49325.1| flagellar biosynthetic protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 280
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
+L +V + ++T + T +++ P +L+++T F R IV +LR +G G
Sbjct: 57 PTLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQ 116
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P N V++ LA+F+T VM P + G+QP +NNQI +TA +P FM
Sbjct: 117 TPSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQI 176
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL F MA + D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 177 RETDLMTFAGMAG----DGKYAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 232
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF
Sbjct: 233 VVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 277
>gi|197248361|ref|YP_002146623.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197212064|gb|ACH49461.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
Length = 215
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 78/213 (36%), Positives = 126/213 (59%), Gaps = 1/213 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S+ ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL
Sbjct: 2 SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMA 152
++ ++M PTL E + T+ + P+ F++ N+ EK+ + F ++
Sbjct: 62 LSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLI 121
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMM
Sbjct: 122 KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +ISLPFK++ F+L GW L + LV+SF
Sbjct: 182 MVSPMTISLPFKLLIFLLAGGWDLTLAKLVQSF 214
>gi|269302615|gb|ACZ32715.1| type III secretion apparatus protein, YscR/HrcR family
[Chlamydophila pneumoniae LPCoLN]
Length = 306
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 129/244 (52%), Gaps = 11/244 (4%)
Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
P + D ++ + I I L+++P L++++T + + II +L
Sbjct: 62 MPPVNADDVLPRDHLSDGSFSDTYPDITTQAIILIFLALSPFLVMLLTSYLKIIITLVLL 121
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET---------- 122
R +G+ PP+ V+ +AL ++ YVM PT + + + N I ++
Sbjct: 122 RNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYKDARKEIEANTIPQSLFTAEGAETV 181
Query: 123 -TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + EP F+ NT + + F ++ + + ++ I+IP+F++ ++
Sbjct: 182 FVALNKSKEPLRSFLIRNTPKAQIQSFYKISQKTFPSEIREHLTASDFVIIIPAFIMGQI 241
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +FEIG LI LPF +ID++ A +++AM MMML P SISLP K++ V++DGW+LL++ L
Sbjct: 242 KNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLIVMVDGWTLLLQGL 301
Query: 242 VKSF 245
+ SF
Sbjct: 302 MISF 305
>gi|254523353|ref|ZP_05135408.1| flagellar biosynthetic protein FliP [Stenotrophomonas sp. SKA14]
gi|219720944|gb|EED39469.1| flagellar biosynthetic protein FliP [Stenotrophomonas sp. SKA14]
Length = 259
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 89/230 (38%), Positives = 132/230 (57%), Gaps = 4/230 (1%)
Query: 16 LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
+ L D+ + + ++T + T +++ P +L+++T F R IIV +LR
Sbjct: 31 PGAPTTPLPDINVGKIGGAPVSLPLQTLLLMTAITLIPSMLLVLTSFTRIIIVLGLLRQA 90
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
+G G P N V++ LALF+T VM PT D++ G+ P +N +I TA P F
Sbjct: 91 LGTGQTPSNQVLLGLALFLTAMVMMPTWDKAWSTGMAPYLNGEIDFQTAWTLTTTPLRGF 150
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
M RE DL F +A D I + +L+ SF+ SEL+ +FEIGFLI +PF
Sbjct: 151 MLAQIRETDLMTFAGIAGHGT----YASPDAIPFPVLVASFVTSELKTAFEIGFLIFIPF 206
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+IID++VA+++M+MGMMML P +S PFK++ FVL+DGW L V L SF
Sbjct: 207 VIIDLVVASVLMSMGMMMLSPMLVSAPFKILLFVLVDGWVLTVGTLAASF 256
>gi|303326581|ref|ZP_07357024.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. 3_1_syn3]
gi|302864497|gb|EFL87428.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. 3_1_syn3]
Length = 225
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 87/223 (39%), Positives = 140/223 (62%), Gaps = 4/223 (1%)
Query: 24 HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
+ + + + ++ + T+LS+AP +++ VT F R IIVFS LR MG+ +PP
Sbjct: 6 LTLSGGAPEPTKVSVLLEILFLLTVLSVAPAIMLTVTSFTRIIIVFSFLRQAMGVQQLPP 65
Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
++ SLA+FMT +M P + + +QP +N QI A+ R P FM +TREK
Sbjct: 66 TQILASLAIFMTVVIMFPVGKQINDQALQPYLNEQIDYKVALDRAQAPLRTFMFKHTREK 125
Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
DLS+F + + + +L +++ISEL+ +F IGFLI +PFL++DM+++
Sbjct: 126 DLSVFYAITQMELPK----NKEEVPTMLLAAAYVISELKTAFTIGFLIYIPFLVLDMVIS 181
Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++++AMGMMMLPP +S+PFK++ FV++DGW+LLV +LV SF+
Sbjct: 182 SVLLAMGMMMLPPMMVSMPFKLLLFVMVDGWNLLVGSLVNSFL 224
>gi|238023706|ref|YP_002907938.1| type III secretion system protein [Burkholderia glumae BGR1]
gi|237878371|gb|ACR30703.1| Type III secretion-associated protein [Burkholderia glumae BGR1]
Length = 216
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 61/213 (28%), Positives = 125/213 (58%), Gaps = 2/213 (0%)
Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
+ I + +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ +
Sbjct: 3 QFSDITGLLLVVIAISLLPFVAMVVTSYAKVVVVLGLLRNALGVQQVPPNMVLNGIAILV 62
Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
+ YVM+P ++ + + +Q ++ A EPF F+ +T+E++ F+ A
Sbjct: 63 SLYVMAPIGMQASKSLEGQQLASQPSQALIQAFGAAREPFRAFLEKHTQEREKRFFLRSA 122
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + +L PSF +SEL +F+IGFL+ + F+++D+I+A +++A+G+
Sbjct: 123 AVVWPKEQAQQLSEHDLIVLAPSFTLSELTDAFKIGFLLYIAFIVVDLIIANVLLALGLN 182
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ PT++++PFK++ FV++DGWS L+ LV ++
Sbjct: 183 QVTPTNVAIPFKLLLFVVMDGWSTLIHGLVMTY 215
>gi|91791432|ref|YP_561083.1| flagellar biosynthesis protein FliP [Shewanella denitrificans
OS217]
gi|91713434|gb|ABE53360.1| flagellar biosynthetic protein FliP [Shewanella denitrificans
OS217]
Length = 229
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 80/207 (38%), Positives = 127/207 (61%), Gaps = 4/207 (1%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+R + L++ P+ +I +T F R IIV S++R +G+ PPN V+I+L+LF+T + M
Sbjct: 27 LRIVLAVSSLTLIPVFVIAMTAFTRIIIVLSLVRQALGLQQTPPNSVLIALSLFLTIFAM 86
Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
S ++ + P N I + A+ EP FM + T E +DMA
Sbjct: 87 SGVFEQINNKALLPYANGSIELSAAVSNGIEPLKGFMLSQTDEVHFIRVLDMAKVPVP-- 144
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + L+P+FM+SEL +F++ FLI LPFL+ID++VA+ +MA+GM+M+PP ++
Sbjct: 145 --QSSADVSLTHLVPAFMLSELTLAFKMAFLIFLPFLMIDLLVASCLMALGMIMVPPITV 202
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
SLP K++ FVLIDGWSL+ +LV+SF+
Sbjct: 203 SLPLKIMVFVLIDGWSLITGSLVQSFM 229
>gi|313610171|gb|EFR85472.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
F2-208]
Length = 252
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 128/244 (52%), Gaps = 6/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + +F V A+S L + D V F + T+LS++ +++M T
Sbjct: 15 VVIFAISLVFFWPGVNVHAESWLDSLGVNGTDG--VNSSVALFVLVTVLSLSASIVLMFT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + +
Sbjct: 73 HFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWS 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ ++ NT + D+++ + +TK + L+P+F++++
Sbjct: 133 ASKVWDETQPLLTKYVAENTYKHDINMMLKAEG----EDPVTKKEDAPLMALMPAFILTQ 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ + F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+
Sbjct: 189 ITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNM 248
Query: 241 LVKS 244
+ ++
Sbjct: 249 IFQT 252
>gi|46578461|ref|YP_009269.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603955|ref|YP_968355.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris DP4]
gi|46447872|gb|AAS94528.1| flagellar biosynthetic protein fliP [Desulfovibrio vulgaris str.
Hildenborough]
gi|120564184|gb|ABM29928.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris DP4]
Length = 235
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 86/238 (36%), Positives = 142/238 (59%), Gaps = 4/238 (1%)
Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
+ + + V + + + + + + T+LS+AP +++ VT F R IIV
Sbjct: 1 MAAMAAQDVVMPTMQLTLAAGRTEPEKVSLTLEILFMLTVLSLAPAIMLTVTSFTRIIIV 60
Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
F +R +G+ ++PP+ V+ SLA+FMT +M+P + +QP + +I A+++
Sbjct: 61 FHFVRQALGVQALPPSQVLASLAIFMTVVIMTPVGKEINDNALQPYLREEIGFNEALKKA 120
Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
P FM +TREKDLS+F + + D + +L ++ISEL+ F IG
Sbjct: 121 EAPMRTFMFKHTREKDLSVFYAVTKMEQPRSK----DDVPTIMLAAGYVISELKTGFTIG 176
Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
FLI +PFLI+DM++++I++AMGMMMLPP +S+PFK++ FV++DGW LLV +LV SF+
Sbjct: 177 FLIYIPFLILDMVISSILLAMGMMMLPPMMVSMPFKLLLFVMVDGWGLLVGSLVNSFM 234
>gi|190574229|ref|YP_001972074.1| flagellar biosynthesis protein FliP [Stenotrophomonas maltophilia
K279a]
gi|194365647|ref|YP_002028257.1| flagellar biosynthesis protein FliP [Stenotrophomonas maltophilia
R551-3]
gi|190012151|emb|CAQ45774.1| putative flagellar biosynthetic protein [Stenotrophomonas
maltophilia K279a]
gi|194348451|gb|ACF51574.1| flagellar biosynthetic protein FliP [Stenotrophomonas maltophilia
R551-3]
Length = 259
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 89/230 (38%), Positives = 132/230 (57%), Gaps = 4/230 (1%)
Query: 16 LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
+ L D+ + + ++T + T +++ P +L+++T F R IIV +LR
Sbjct: 31 PGAPTTPLPDINVGKIGGAPVSLPLQTLLLMTAITLIPSMLLVLTSFTRIIIVLGLLRQA 90
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
+G G P N V++ LALF+T VM PT D++ G+ P +N +I TA P F
Sbjct: 91 LGTGQTPSNQVLLGLALFLTAMVMMPTWDKAWSTGMAPYLNGEIDFQTAWTLTTTPLRGF 150
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
M RE DL F +A D I + +L+ SF+ SEL+ +FEIGFLI +PF
Sbjct: 151 MLAQIRETDLMTFAGIAGHGT----YASPDAIPFPVLVASFVTSELKTAFEIGFLIFIPF 206
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+IID++VA+++M+MGMMML P +S PFK++ FVL+DGW L V L SF
Sbjct: 207 VIIDLVVASVLMSMGMMMLSPMLVSAPFKILLFVLVDGWVLTVGTLAASF 256
>gi|16764769|ref|NP_460384.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|56413610|ref|YP_150685.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62180010|ref|YP_216427.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161614164|ref|YP_001588129.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167551612|ref|ZP_02345366.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167995053|ref|ZP_02576143.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168233614|ref|ZP_02658672.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|168239303|ref|ZP_02664361.1| type III secretion apparatus protein, YscR/HrcR family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168240932|ref|ZP_02665864.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168263749|ref|ZP_02685722.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168463171|ref|ZP_02697102.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|194448961|ref|YP_002045422.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194472648|ref|ZP_03078632.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194736899|ref|YP_002114432.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197266014|ref|ZP_03166088.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197362534|ref|YP_002142171.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198242436|ref|YP_002215713.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200390900|ref|ZP_03217511.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204927846|ref|ZP_03219047.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|224584070|ref|YP_002637868.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238913178|ref|ZP_04657015.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|2494570|sp|P74890|YSCR_SALTY RecName: Full=Virulence protein yscR
gi|1526985|emb|CAA68199.1| secretion system apparatus, SsaR [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16419940|gb|AAL20343.1| secretion system apparatus protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|56127867|gb|AAV77373.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62127643|gb|AAX65346.1| Secretion system apparatus SsaR [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161363528|gb|ABX67296.1| hypothetical protein SPAB_01906 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194407265|gb|ACF67484.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194459012|gb|EDX47851.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194712401|gb|ACF91622.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195634326|gb|EDX52678.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197094011|emb|CAR59507.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197244269|gb|EDY26889.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197288009|gb|EDY27396.1| type III secretion apparatus protein, YscR/HrcR family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197936952|gb|ACH74285.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199603345|gb|EDZ01891.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204323188|gb|EDZ08384.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205323559|gb|EDZ11398.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205327197|gb|EDZ13961.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205332323|gb|EDZ19087.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205339292|gb|EDZ26056.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205347547|gb|EDZ34178.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|224468597|gb|ACN46427.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261246625|emb|CBG24435.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993308|gb|ACY88193.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157954|emb|CBW17449.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912404|dbj|BAJ36378.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321224041|gb|EFX49104.1| Type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|322615097|gb|EFY12020.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619938|gb|EFY16811.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622250|gb|EFY19095.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627772|gb|EFY24562.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632883|gb|EFY29627.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636626|gb|EFY33329.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641181|gb|EFY37823.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644884|gb|EFY41417.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650280|gb|EFY46694.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655853|gb|EFY52155.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660179|gb|EFY56418.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665255|gb|EFY61443.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322669512|gb|EFY65660.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673438|gb|EFY69540.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677366|gb|EFY73430.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322679971|gb|EFY76010.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687443|gb|EFY83415.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322714477|gb|EFZ06048.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323129691|gb|ADX17121.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323194104|gb|EFZ79303.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198585|gb|EFZ83686.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202911|gb|EFZ87946.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323208631|gb|EFZ93569.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211167|gb|EFZ96014.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217608|gb|EGA02323.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323218957|gb|EGA03467.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323223787|gb|EGA08091.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229410|gb|EGA13533.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323232633|gb|EGA16729.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240329|gb|EGA24373.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242682|gb|EGA26703.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323245893|gb|EGA29881.1| type III secretion system protein YscR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252457|gb|EGA36304.1| type III secretion system protein YscR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256476|gb|EGA40209.1| type III secretion system protein YscR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323260039|gb|EGA43664.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323271479|gb|EGA54900.1| type III secretion system protein YscR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326623460|gb|EGE29805.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|332988306|gb|AEF07289.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 215
Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats.
Identities = 78/213 (36%), Positives = 126/213 (59%), Gaps = 1/213 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S+ ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL
Sbjct: 2 SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMA 152
++ ++M PTL E + T+ + P+ F++ N+ EK+ + F ++
Sbjct: 62 LSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLI 121
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMM
Sbjct: 122 KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +ISLPFK++ F+L GW L + LV+SF
Sbjct: 182 MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214
>gi|16802718|ref|NP_464203.1| flagellar biosynthesis protein FliP [Listeria monocytogenes EGD-e]
gi|224502019|ref|ZP_03670326.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
R2-561]
gi|16410065|emb|CAC98754.1| lmo0676 [Listeria monocytogenes EGD-e]
Length = 255
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 64/244 (26%), Positives = 127/244 (52%), Gaps = 6/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + + V A+S + + D V F + T+LS++ +++M T
Sbjct: 15 IVIFAISLVVFWPGVNVHAESWMDSLGVNGTDG--VNSSVALFVLVTVLSLSASIVLMFT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + +
Sbjct: 73 HFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWS 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ ++ NT + D+++ + +TK + L+P+F++++
Sbjct: 133 ASKVWDETQPLLTKYVAENTYKHDINMMLKAEG----EDPVTKKEDAPLMALMPAFILTQ 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ + F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+
Sbjct: 189 ITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNM 248
Query: 241 LVKS 244
+ ++
Sbjct: 249 IFQT 252
>gi|15618734|ref|NP_225020.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]
gi|15836358|ref|NP_300882.1| type III secretion system protein [Chlamydophila pneumoniae J138]
gi|16752215|ref|NP_445583.1| type III secretion system protein [Chlamydophila pneumoniae AR39]
gi|33242185|ref|NP_877126.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]
gi|4377137|gb|AAD18962.1| Yop proteins translocation protein R [Chlamydophila pneumoniae
CWL029]
gi|6672012|dbj|BAA88643.1| Yop translocation R [Chlamydophila pneumoniae]
gi|7189960|gb|AAF38821.1| type III secretion inner membrane protein SctR [Chlamydophila
pneumoniae AR39]
gi|8979199|dbj|BAA99033.1| Yop translocation R [Chlamydophila pneumoniae J138]
gi|33236696|gb|AAP98783.1| YscR [Chlamydophila pneumoniae TW-183]
Length = 306
Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats.
Identities = 71/244 (29%), Positives = 129/244 (52%), Gaps = 11/244 (4%)
Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
P L D ++ + I I L+++P L++++T + + II +L
Sbjct: 62 MPPLNADDVLPRDHLSDGSFSDTYPDITTQAIILIFLALSPFLVMLLTSYLKIIITLVLL 121
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET---------- 122
R +G+ PP+ V+ +AL ++ YVM PT + + + N I ++
Sbjct: 122 RNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYKDARKEIEANTIPQSLFTAEGAETV 181
Query: 123 -TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + EP F+ NT + + F ++ + + ++ I+IP+F++ ++
Sbjct: 182 FVALNKSKEPLRSFLIRNTPKAQIQSFYKISQKTFPSEIRAHLTASDFVIIIPAFIMGQI 241
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +FEIG LI LPF +ID++ A +++AM MMML P SISLP K++ V++DGW+LL++ L
Sbjct: 242 KNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLIVMVDGWTLLLQGL 301
Query: 242 VKSF 245
+ SF
Sbjct: 302 MISF 305
>gi|45435136|gb|AAS60696.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Microtus str. 91001]
Length = 201
Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats.
Identities = 74/201 (36%), Positives = 121/201 (60%), Gaps = 2/201 (0%)
Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
+LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL +T ++M+P
Sbjct: 1 MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ 60
Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
++N I Q P+ F++ NT + ++ F D+ +
Sbjct: 61 ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK 120
Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P ++SLPFK+
Sbjct: 121 PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL 180
Query: 226 IFFVLIDGWSLLVENLVKSFI 246
+ FVL+DGWSL++ LV S++
Sbjct: 181 LVFVLVDGWSLVLGQLVGSYL 201
>gi|284006888|emb|CBA72157.1| type III secretion component protein SctR [Arsenophonus nasoniae]
Length = 192
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 68/190 (35%), Positives = 108/190 (56%), Gaps = 2/190 (1%)
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN- 116
M T F + +VFS+LR +G+ +PPN+ I L++ +T YVM+P + + + ++
Sbjct: 1 MATSFVKMAMVFSLLRNALGVQQIPPNMAIYGLSIILTLYVMAPVALATKDFLNENPISL 60
Query: 117 -NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
+ + +P+ F+ + ++ F + IL+P+
Sbjct: 61 SANASLEYFFEEGTKPYKSFLTKHINPREKEFFNENIAKYWPAKYANSVSSDSLFILLPA 120
Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
F ISEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ FV+ DGWS
Sbjct: 121 FTISELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFKLLLFVMFDGWS 180
Query: 236 LLVENLVKSF 245
L LV S+
Sbjct: 181 RLSHGLVLSY 190
>gi|290892876|ref|ZP_06555867.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
J2-071]
gi|290557688|gb|EFD91211.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
J2-071]
Length = 255
Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 128/244 (52%), Gaps = 6/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + +F V A+S L + D V F + T+LS++ +++M T
Sbjct: 15 VVIFAISLVFFWPGVNVHAESWLDSLGVNGTDG--VNSSVALFVMVTVLSLSASIVLMFT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + +
Sbjct: 73 HFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWS 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ ++ NT + D+++ + +TK + L+P+F++++
Sbjct: 133 ASKVWDETQPLLTKYVAENTYKHDINMMLKAEG----EDPVTKKEDAPLMALMPAFILTQ 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ + F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+
Sbjct: 189 ITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNM 248
Query: 241 LVKS 244
+ ++
Sbjct: 249 IFQT 252
>gi|293416351|ref|ZP_06658990.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
coli B185]
gi|291431707|gb|EFF04690.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
coli B185]
Length = 220
Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 114/211 (54%), Gaps = 4/211 (1%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P ++ TCF +F +VF ++R +G+ VP N+V+ +AL ++ +VM
Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSVVFIMMRNALGLQQVPSNMVLNGVALMLSAFVM 64
Query: 100 SPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD--MAHSS 155
P ++ + + + ++ + ++ + ++ ++ F D S
Sbjct: 65 YPVTQQALDYYQNNSVNFRDADSVSDFVEHGLGRYREYLSRYSDKELVAFFEDAQHQRVS 124
Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
+ + L+P++ +SE++ +F I F + LPF+++D++++++++A+GMMM+
Sbjct: 125 REEALAAEGEQTSILSLLPAYALSEIKSAFRICFYLYLPFVVVDLVISSVLLALGMMMMS 184
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
P +IS P K+I FV +DGW+LL LV ++
Sbjct: 185 PVTISTPVKLILFVAMDGWTLLSRGLVMQYM 215
>gi|254830333|ref|ZP_05234988.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 10403S]
Length = 255
Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats.
Identities = 63/244 (25%), Positives = 126/244 (51%), Gaps = 6/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + + V A+S + + D V F + T+LS++ +++M T
Sbjct: 15 IVIFAISLVVFWPGVNVHAESWMDSLGVNGTDG--VNSSVALFVLVTVLSLSASIVLMFT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + +
Sbjct: 73 HFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWS 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ ++ NT + D+++ + +T + L+P+F++++
Sbjct: 133 ASKVWDETQPLLTKYVAENTYKHDINMMLKAEG----EDPVTNKEDAPLMALMPAFILTQ 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ + F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+
Sbjct: 189 ITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNM 248
Query: 241 LVKS 244
+ ++
Sbjct: 249 IFQT 252
>gi|168822289|ref|ZP_02834289.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194445968|ref|YP_002040671.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|205352865|ref|YP_002226666.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207857075|ref|YP_002243726.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|194404631|gb|ACF64853.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|205272646|emb|CAR37556.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205341300|gb|EDZ28064.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|206708878|emb|CAR33208.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|309243393|gb|ADO51969.1| SsaR [Salmonella enterica subsp. enterica serovar Gallinarum]
gi|320086102|emb|CBY95876.1| Virulence protein yscR [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|326627937|gb|EGE34280.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9]
Length = 215
Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats.
Identities = 78/213 (36%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S+ ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL
Sbjct: 2 SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMA 152
++ ++M PTL E + T+ + P+ F++ N+ EK+ + F +
Sbjct: 62 LSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLI 121
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMM
Sbjct: 122 KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +ISLPFK++ F+L GW L + LV+SF
Sbjct: 182 MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214
>gi|166154777|ref|YP_001654895.1| type III secretion system protein [Chlamydia trachomatis 434/Bu]
gi|301336052|ref|ZP_07224296.1| type III secretion system protein [Chlamydia trachomatis L2tet1]
gi|165930765|emb|CAP04262.1| type III secretion system, membrane protein [Chlamydia trachomatis
434/Bu]
Length = 306
Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 125/244 (51%), Gaps = 13/244 (5%)
Query: 15 ELVFAKSSLHDVMNIPADL--SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
V A+ L ++ + + I L+++P L++++T + + II +L
Sbjct: 62 PTVEAQHLLPPQEDLSSGAFSETYPDLTTQAVILLFLALSPFLVMLLTSYLKIIITLVLL 121
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ-----------PLMNNQITE 121
R +G+ PP+ V+ +AL ++ YVM PT + T
Sbjct: 122 RNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYHDAKKGIESSAVPRDLFSAEGAETV 181
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + EP F+ NT + + F ++ + + ++ I+IP+F++ ++
Sbjct: 182 FVALNKSKEPLRSFLIKNTPKPQIQSFYKISQKTFPPELRQQLTPSDFMIIIPAFIMGQI 241
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +FEIG LI LPF +ID++ A +++AM MMML P SISLP K++ V++DGW+LL+E L
Sbjct: 242 KNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLEGL 301
Query: 242 VKSF 245
+ SF
Sbjct: 302 MISF 305
>gi|312602787|ref|YP_004022632.1| type III secretion inner membrane protein SctR [Burkholderia
rhizoxinica HKI 454]
gi|306431590|emb|CBK52142.1| type III secretion inner membrane protein SctR [Burkholderia
rhizoxinica HKI 454]
gi|312170101|emb|CBW77113.1| type III secretion inner membrane protein SctR [Burkholderia
rhizoxinica HKI 454]
Length = 230
Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats.
Identities = 58/213 (27%), Positives = 122/213 (57%), Gaps = 2/213 (0%)
Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
+ + I +S+ P++ +++T + + ++V S+LR +G VPPN+V+ +A+ +
Sbjct: 17 QPSELTSLMLIVLAISVVPLVAVVITSYTKIVVVLSLLRNALGAQQVPPNMVLNGIAILV 76
Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
+ Y+M+P + + +++ A EPF F++ + +++ FM A
Sbjct: 77 SLYIMAPIGMAAAKQLENQPNAGTPSQSVVQAFSAAQEPFRAFLKQHANKREKRFFMRTA 136
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
++ +L P+F +SEL +F+IGFL+ + F++ID+I+A +++AMG+
Sbjct: 137 TVIWPKEVADGLREDDFIVLAPAFTLSELTDAFKIGFLLYITFVVIDLIIANVLLAMGLN 196
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ PT++++PFK++ FV++DGWS L+ L+ ++
Sbjct: 197 QVMPTNVAIPFKLLLFVVMDGWSTLIHGLILTY 229
>gi|238752375|ref|ZP_04613853.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
rohdei ATCC 43380]
gi|238709416|gb|EEQ01656.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
rohdei ATCC 43380]
Length = 216
Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats.
Identities = 77/215 (35%), Positives = 122/215 (56%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + + ILS+ P+L++M T F + IVFS+LR +G+ VPPN+ I LAL
Sbjct: 2 ELLNSSSQLIVLLFILSLLPLLMVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T ++M+P + N+I + EP+ F++ NT + F D+
Sbjct: 62 LTIFIMAPVGLDVHARLQDEPLPNEIGALLHHIDEHALEPYRDFLQRNTDVEQAKFFNDI 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGM
Sbjct: 122 VQTKWPERYRDTIKSNSLLILMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MM+ P +ISLPFK++ F+LIDGW LL+ LV S++
Sbjct: 182 MMVSPITISLPFKLLIFILIDGWGLLLGQLVGSYL 216
>gi|217965226|ref|YP_002350904.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
gi|217334496|gb|ACK40290.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
gi|307570215|emb|CAR83394.1| flagellar biosynthesis protein [Listeria monocytogenes L99]
Length = 255
Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 127/244 (52%), Gaps = 6/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + +F V A+S L + D V F + T+LS++ +++M T
Sbjct: 15 VVIFAISLVFFWPGVNVHAESWLDSLGVNGTDG--VNSSVALFVMVTVLSLSASIVLMFT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F IIV + R G+G ++PPN V++ LALF++ ++M P + + +P +
Sbjct: 73 HFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEDWS 132
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ ++ NT + D+++ + +TK + L+P+F++++
Sbjct: 133 ASKVWDETQPLLTKYVAENTYKHDINMMLKAEG----EDPVTKKEDAPLMALMPAFILTQ 188
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ + F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+
Sbjct: 189 ITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNM 248
Query: 241 LVKS 244
+ ++
Sbjct: 249 IFQT 252
>gi|34498079|ref|NP_902294.1| surface presentation of antigens protein SpaP [Chromobacterium
violaceum ATCC 12472]
gi|34103934|gb|AAQ60294.1| surface presentation of antigens; secretory proteins
[Chromobacterium violaceum ATCC 12472]
Length = 220
Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 52/215 (24%), Positives = 114/215 (53%), Gaps = 5/215 (2%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + + ++ P L+ TCF +F IVF ++R +G+ VP N+ + +AL ++
Sbjct: 2 SNDISLIALLAFSTLLPFLIASGTCFVKFSIVFVMVRNALGLQQVPSNMTLNGIALMLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P ++ + + ++ + + +++ + + F
Sbjct: 62 FVMLPVAQQAYGYYQEERVSFTSVEAVNNFVENGLDGYRGYLQKYSDPELTRFFEKAQSQ 121
Query: 155 SHRN---TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+D L+P++ +SE++ +F+IGF + LPF+++D++++++++A+GM
Sbjct: 122 RSERDGGEAAAPDDKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVISSVLLALGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MM+ P +IS+P K++ FV +DGW+LL + LV ++
Sbjct: 182 MMMSPVTISVPIKLVLFVALDGWTLLSKGLVLQYL 216
>gi|15605291|ref|NP_220077.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX]
gi|76789299|ref|YP_328385.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13]
gi|166155652|ref|YP_001653907.1| type III secretion system protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|237802991|ref|YP_002888185.1| type III secretion system protein [Chlamydia trachomatis
B/Jali20/OT]
gi|237804913|ref|YP_002889067.1| type III secretion system protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255311381|ref|ZP_05353951.1| type III secretion system protein [Chlamydia trachomatis 6276]
gi|255317682|ref|ZP_05358928.1| type III secretion system protein [Chlamydia trachomatis 6276s]
gi|3329003|gb|AAC68164.1| Yop proteins translocation protein R [Chlamydia trachomatis
D/UW-3/CX]
gi|76167829|gb|AAX50837.1| SctR [Chlamydia trachomatis A/HAR-13]
gi|165931640|emb|CAP07216.1| type III secretion system, membrane protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|231273213|emb|CAX10126.1| type III secretion system, membrane protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231274225|emb|CAX11019.1| type III secretion system, membrane protein [Chlamydia trachomatis
B/Jali20/OT]
gi|296436096|gb|ADH18270.1| type III secretion system protein [Chlamydia trachomatis G/9768]
gi|296437024|gb|ADH19194.1| type III secretion system protein [Chlamydia trachomatis G/11222]
gi|296437956|gb|ADH20117.1| type III secretion system protein [Chlamydia trachomatis G/11074]
gi|297140457|gb|ADH97215.1| type III secretion system protein [Chlamydia trachomatis G/9301]
Length = 306
Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 125/244 (51%), Gaps = 13/244 (5%)
Query: 15 ELVFAKSSLHDVMNIPADL--SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
V A+ L ++ + + I L+++P L++++T + + II +L
Sbjct: 62 PTVEAQHLLPPQEDLSSGAFSETYPDLTTQAVILLFLALSPFLVMLLTSYLKIIITLVLL 121
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ-----------PLMNNQITE 121
R +G+ PP+ V+ +AL ++ YVM PT + T
Sbjct: 122 RNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYNDAKKGIESSAVPRDLFSAEGAETV 181
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + EP F+ NT + + F ++ + + ++ I+IP+F++ ++
Sbjct: 182 FVALNKSKEPLRSFLIKNTPKPQIQSFYKISQKTFPPELRQQLTPSDFMIIIPAFIMGQI 241
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +FEIG LI LPF +ID++ A +++AM MMML P SISLP K++ V++DGW+LL+E L
Sbjct: 242 KNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLEGL 301
Query: 242 VKSF 245
+ SF
Sbjct: 302 MISF 305
>gi|16520044|ref|NP_444164.1| type III secretion system protein [Sinorhizobium fredii NGR234]
gi|2494571|sp|P55720|Y4YL_RHISN RecName: Full=Probable translocation protein y4yL
gi|2182737|gb|AAB91951.1| innermembrane protein RhcR; component of type III secretion
apparatus [Sinorhizobium fredii NGR234]
Length = 222
Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 69/192 (35%), Positives = 113/192 (58%), Gaps = 2/192 (1%)
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
++ T F + +V ++R +G ++PPN+V+ + AL +T +V +P +++ + P +
Sbjct: 25 VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPVAEQTYDRITDPRL 84
Query: 116 NNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
Q A + ++P ++ T E+ F+ ++ IL+
Sbjct: 85 RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRAGVTADDFAILV 144
Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+ FV IDG
Sbjct: 145 PSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDG 204
Query: 234 WSLLVENLVKSF 245
WS L+ LV S+
Sbjct: 205 WSRLMHGLVLSY 216
>gi|297620337|ref|YP_003708474.1| type III secretion inner membrane protein SctR [Waddlia
chondrophila WSU 86-1044]
gi|297375638|gb|ADI37468.1| type III secretion inner membrane protein SctR [Waddlia
chondrophila WSU 86-1044]
Length = 296
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 72/213 (33%), Positives = 123/213 (57%), Gaps = 11/213 (5%)
Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
+ TILS+ P +++++T F + +IV S+LR +G+ PPN +I + L ++ ++M PT+
Sbjct: 83 AVLTILSMLPFIVMILTSFMKIVIVLSLLRNALGVQQAPPNQIINGVGLMLSMFIMYPTV 142
Query: 104 DRSIEMGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
E+ + Q ++ T EP F+ +N+ + +LF MA
Sbjct: 143 VEMYEVSQKATQEMQAPDSVISSGSSTYILTIADATKEPLRTFLIDNSSVRHRALFFRMA 202
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ ++ I++PSF+ S+L+ +FEIG LI +PF +ID++ + I++AMGMM
Sbjct: 203 YKVLPEKYRPNLKPEDFIIVVPSFITSQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMM 262
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
ML P +IS+P K+ V++DGW+LLVE LV +F
Sbjct: 263 MLSPVTISMPLKLFLLVMLDGWTLLVEGLVNTF 295
>gi|317407761|gb|EFV87688.1| type III secretion protein [Achromobacter xylosoxidans C54]
Length = 230
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 17/224 (7%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ +++++ P+ ++M T F + +V ++R +G+ PPN+ + LA+ ++ YV
Sbjct: 6 PITLALALSMVALVPLAVVMTTSFLKISVVLVLVRNALGIQQAPPNMALYGLAVILSAYV 65
Query: 99 MSPTLDRSIEM----GIQPLMNNQITETTAIQ-------------RVAEPFWVFMRNNTR 141
M+P + P + T Q R AEP FM N+R
Sbjct: 66 MAPVGYQISAELRAVASAPATESGAPGTQGAQAGSSLENFLDVAARAAEPMRGFMLKNSR 125
Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
+ F+ A + +L+P+F++SEL +F++GFL+ LPF++ID+I
Sbjct: 126 AEQRDFFVRTARQLWGPEQAAALRETDLIVLVPAFLLSELTVAFQVGFLLYLPFVVIDLI 185
Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
V+ I+MAMGMMM+ P +IS+P K+ FV++DGWS L++ LV S+
Sbjct: 186 VSNILMAMGMMMVSPVTISMPLKLFLFVMVDGWSRLIQGLVLSY 229
>gi|17549081|ref|NP_522421.1| type III secretion system protein [Ralstonia solanacearum GMI1000]
gi|2494568|sp|Q52488|HRCR_RALSO RecName: Full=Hypersensitivity response secretion protein hrcR
gi|6066701|emb|CAB58247.1| HrpT protein [Ralstonia solanacearum]
gi|17431332|emb|CAD18011.1| hrp conserved hrcr transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|219566950|dbj|BAH04981.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
gi|1097280|prf||2113360F hrpT gene
Length = 217
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 56/208 (26%), Positives = 119/208 (57%), Gaps = 4/208 (1%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ +VM+P
Sbjct: 9 LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFVMAP 68
Query: 102 TLDRSIEMGIQPLMNNQITETTA----IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+++ + T T + +PF F+ +T ++ + FM A
Sbjct: 69 VGMEAMQRAHVQINAQGGTNITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 128
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+
Sbjct: 129 PAKAAQLKDDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 188
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
++++PFK++ FV++DGWS+L+ LV ++
Sbjct: 189 NVAIPFKLLLFVVMDGWSVLIHGLVNTY 216
>gi|19749328|gb|AAL98698.1| Y4yL [Sinorhizobium fredii]
gi|52631921|gb|AAU85371.1| RhcR [Sinorhizobium fredii]
Length = 222
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 69/192 (35%), Positives = 114/192 (59%), Gaps = 2/192 (1%)
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
++ T F + +V ++R +G ++PPN+V+ + AL +T +V +P +++ + P +
Sbjct: 25 VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRITDPRL 84
Query: 116 NNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
Q A + ++P ++ T E+ F+ + ++ IL+
Sbjct: 85 RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADDFAILV 144
Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+ FV IDG
Sbjct: 145 PSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDG 204
Query: 234 WSLLVENLVKSF 245
WS L+ LV S+
Sbjct: 205 WSRLMHGLVLSY 216
>gi|297748692|gb|ADI51238.1| type III secretion inner membrane protein SctR [Chlamydia
trachomatis D-EC]
gi|297749572|gb|ADI52250.1| type III secretion inner membrane protein SctR [Chlamydia
trachomatis D-LC]
Length = 309
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 125/244 (51%), Gaps = 13/244 (5%)
Query: 15 ELVFAKSSLHDVMNIPADL--SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
V A+ L ++ + + I L+++P L++++T + + II +L
Sbjct: 65 PTVEAQHLLPPQEDLSSGAFSETYPDLTTQAVILLFLALSPFLVMLLTSYLKIIITLVLL 124
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ-----------PLMNNQITE 121
R +G+ PP+ V+ +AL ++ YVM PT + T
Sbjct: 125 RNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYNDAKKGIESSAVPRDLFSAEGAETV 184
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + EP F+ NT + + F ++ + + ++ I+IP+F++ ++
Sbjct: 185 FVALNKSKEPLRSFLIKNTPKPQIQSFYKISQKTFPPELRQQLTPSDFMIIIPAFIMGQI 244
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +FEIG LI LPF +ID++ A +++AM MMML P SISLP K++ V++DGW+LL+E L
Sbjct: 245 KNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLEGL 304
Query: 242 VKSF 245
+ SF
Sbjct: 305 MISF 308
>gi|255348943|ref|ZP_05380950.1| type III secretion system protein [Chlamydia trachomatis 70]
gi|255503482|ref|ZP_05381872.1| type III secretion system protein [Chlamydia trachomatis 70s]
gi|255507160|ref|ZP_05382799.1| type III secretion system protein [Chlamydia trachomatis D(s)2923]
gi|289525607|emb|CBJ15085.1| type III secretion system, membrane protein [Chlamydia trachomatis
Sweden2]
gi|296435168|gb|ADH17346.1| type III secretion system protein [Chlamydia trachomatis E/150]
gi|296438888|gb|ADH21041.1| type III secretion system protein [Chlamydia trachomatis E/11023]
Length = 306
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 125/244 (51%), Gaps = 13/244 (5%)
Query: 15 ELVFAKSSLHDVMNIPADL--SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
V A+ L ++ + + I L+++P L++++T + + II +L
Sbjct: 62 PTVEAQHLLPPQEDLSSGAFSETYPDLTTQAVILLFLALSPFLVMLLTSYLKIIITLVLL 121
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ-----------PLMNNQITE 121
R +G+ PP+ V+ +AL ++ YVM PT + T
Sbjct: 122 RNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYNDAKKGIESSAVPRDLFSAEGAETV 181
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + EP F+ NT + + F ++ + + ++ I+IP+F++ ++
Sbjct: 182 FVALNKSKEPLRSFLIKNTPKPQIQSFYKISQKTFPPELRQQLTPSDFMIIIPAFIMGQI 241
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +FEIG LI LPF +ID++ A +++AM MMML P SISLP K++ V++DGW+LL+E L
Sbjct: 242 KNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLEGL 301
Query: 242 VKSF 245
+ SF
Sbjct: 302 MISF 305
>gi|34498458|ref|NP_902673.1| flagellar biosynthesis protein FliP [Chromobacterium violaceum ATCC
12472]
gi|34104313|gb|AAQ60672.1| flagellar biosynthetic protein fliP [Chromobacterium violaceum ATCC
12472]
Length = 248
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 75/221 (33%), Positives = 126/221 (57%), Gaps = 4/221 (1%)
Query: 24 HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
N T + + T L + P+L++M+T F RF+IV S+LR +G+ P
Sbjct: 28 LLSANAGGSSVDFTIKTQILILMTALGLLPVLVLMMTSFTRFVIVLSLLRQALGLQQGLP 87
Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
N +I +AL +T VM P + + P ++IT A++ A+P FM T +
Sbjct: 88 NRLITGVALILTLLVMRPVGLQVWNEAMVPFDQDKITMQQALEIAAKPVSRFMLAQTGKT 147
Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
L+ ++ + + + + + + + +F++SEL+ +F+IG ++ +PFL+ID++V+
Sbjct: 148 ALAQVARLSGEEN----VARPEDHAFTVKLAAFVLSELKTAFQIGCMLFIPFLVIDLVVS 203
Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
+++MAMGMMML P ISLP K++ FVL+DGWSL V LV S
Sbjct: 204 SVLMAMGMMMLSPLVISLPLKLLLFVLVDGWSLTVNTLVTS 244
>gi|299069226|emb|CBJ40486.1| Hypersensitivity response secretion protein hrcR, type III
secretion system [Ralstonia solanacearum CMR15]
Length = 217
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 58/208 (27%), Positives = 119/208 (57%), Gaps = 4/208 (1%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ +VM+P
Sbjct: 9 LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFVMAP 68
Query: 102 TLDRSIEMGIQPLMNNQITETTA----IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+++ L T T + +PF F+ +T ++ + FM A
Sbjct: 69 VGMEAMQRAHVQLNAQGGTTITQVMPLLDAARDPFREFLNKHTNPREKAFFMRSAQQLWP 128
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ + +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+
Sbjct: 129 PAKAAQLKDDDLIVLAPAFTLTELTSAFRIGFLLYLVFIVIDLVIANLLMALGLSQVTPS 188
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
++++PFK++ FV++DGWS+LV LV ++
Sbjct: 189 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 216
>gi|108758905|ref|YP_633786.1| type III secretion system protein [Myxococcus xanthus DK 1622]
gi|108462785|gb|ABF87970.1| type III secretion apparatus protein YscR/HrcR [Myxococcus xanthus
DK 1622]
Length = 218
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 69/216 (31%), Positives = 127/216 (58%), Gaps = 4/216 (1%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S + + G+ ++S+ P ++M+T F + +V S+ R+ MG PP +V+ LA
Sbjct: 2 SYAGSPLSMMGMLAVMSLLPFAVLMLTSFSKIAVVLSLARSAMGTQQAPPTIVLTGLAAV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMN----NQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
+T ++M+P ++R + G + +A RV+EP F+ + ++ + F+
Sbjct: 62 LTGHIMAPVMERMYDAGQVAYAEVASGSGAEMLSAASRVSEPLRAFLIKHGSAEERARFV 121
Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
D+A ++ + I+IP+F+I+EL+ +F+IGFL+ LPFL++DM++A +++A+
Sbjct: 122 DLARELRPVEEMDAVRETDLFIVIPAFVITELKEAFQIGFLVFLPFLVLDMVIANVLLAL 181
Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GM L P+ +SLPFK++ FV +DGWSLL L+ +
Sbjct: 182 GMQTLSPSQVSLPFKILLFVAVDGWSLLARGLILGY 217
>gi|330819399|ref|YP_004348261.1| Type III secretion inner membrane protein SctR [Burkholderia
gladioli BSR3]
gi|327371394|gb|AEA62749.1| Type III secretion inner membrane protein SctR [Burkholderia
gladioli BSR3]
Length = 216
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 61/213 (28%), Positives = 124/213 (58%), Gaps = 2/213 (0%)
Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
+ I + +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ +
Sbjct: 3 QFSDITGLLLVVIAISLLPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILV 62
Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
+ YVM+P ++ + + +Q ++ A EPF F+ +T E++ F+ A
Sbjct: 63 SIYVMAPIGMQASKALEGQQLASQPSQALIQAFGAAKEPFRAFLVKHTAEREKRFFLRSA 122
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + +L PSF +SEL +F+IGFL+ + F+++D+I+A +++A+G+
Sbjct: 123 AVVWPKEQAQQLSENDLIVLAPSFTLSELTDAFKIGFLLYIAFIVVDLIIANVLLALGLN 182
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ PT++++PFK++ FV++DGWS L+ LV ++
Sbjct: 183 QVTPTNVAIPFKLLLFVVMDGWSTLIHGLVMTY 215
>gi|270285645|ref|ZP_06195039.1| type III secretion system protein [Chlamydia muridarum Nigg]
Length = 271
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 15 ELVFAKSSLHDVMNIPADL--SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
+ V A+ L ++ + + I L+++P L++++T + + II +L
Sbjct: 27 QPVEAQDLLASQEDLSSGAFSDTYPDLTTQAVIILFLALSPFLVMLLTSYLKIIITLVLL 86
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ-----------PLMNNQITE 121
R +G+ PP+ V+ +AL ++ YVM PT + T
Sbjct: 87 RNALGVQQTPPSQVLNGIALILSIYVMFPTGMAMYNDAKKGIESDAVPRDLFSAEGAETV 146
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
A+ + EP F+ NNT + + F ++ + + ++ ++IP+F++ ++
Sbjct: 147 FVALNKSKEPLRSFLINNTPKPQIQSFYKISQKTFPPELRQQLTPSDFVVVIPAFIMGQI 206
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +FEIG LI LPF +ID++ A +++AM MMML P SISLP K++ V++DGW+LL+E L
Sbjct: 207 KNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLEGL 266
Query: 242 VKSF 245
+ SF
Sbjct: 267 MISF 270
>gi|268592375|ref|ZP_06126596.1| type III secretion apparatus protein, YscR/HrcR family [Providencia
rettgeri DSM 1131]
gi|291312161|gb|EFE52614.1| type III secretion apparatus protein, YscR/HrcR family [Providencia
rettgeri DSM 1131]
Length = 232
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 58/209 (27%), Positives = 113/209 (54%), Gaps = 2/209 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ I ++ P ++ TC+ + IV ++R MG+ VP +V+ +AL ++ +VM
Sbjct: 19 IPLLAIIAFSTLLPFVIAAGTCYLKISIVLIMVRNAMGVQQVPSTMVLNGIALLLSIFVM 78
Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P L Q ++ N + ++ + +++ + + ++ F +
Sbjct: 79 MPVLQDVNNHMRQEQVDFSNVESIDNFVENGLGGYKSYLKKYSDPQLVTFFESIQQGRSE 138
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
L+P++ +SE++ +FEIGF I LPF+++D+++++I++A+GMMM+ P
Sbjct: 139 EEITADEGKATLFSLLPAYALSEIKSAFEIGFYIYLPFVVVDLVISSILLALGMMMMSPV 198
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+IS+P K+I FV IDGWSL+ + LV +I
Sbjct: 199 TISIPVKLILFVAIDGWSLISKGLVMQYI 227
>gi|188026435|ref|ZP_02962073.2| hypothetical protein PROSTU_04166 [Providencia stuartii ATCC 25827]
gi|188019857|gb|EDU57897.1| hypothetical protein PROSTU_04166 [Providencia stuartii ATCC 25827]
Length = 227
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 55/219 (25%), Positives = 117/219 (53%), Gaps = 2/219 (0%)
Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
++SI + + + ++ ++ P ++ TC+ + IV ++R MG+ VP + +
Sbjct: 4 GHNMSIVSNEIPMLALVSLATLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNG 63
Query: 90 LALFMTFYVMSPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
+A+ ++ +VM P + + N + + + +++ + + +
Sbjct: 64 IAMLLSLFVMMPVVQDISHYMREEKVDFGNVESVDNFVDGGLGRYKAYLQKYSDPELVQF 123
Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
F + + + L+P++ +SE++ +FEIGF I LPF++ID+++++I++
Sbjct: 124 FESVQQQRNEEPMDAEAHSATLFSLLPAYALSEVKSAFEIGFYIYLPFVVIDLVISSILL 183
Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
A+GMMM+ P +IS+P K+I FV IDGWSL+ + LV ++
Sbjct: 184 ALGMMMMSPVTISVPVKLILFVAIDGWSLISKGLVMQYL 222
>gi|21242688|ref|NP_642270.1| flagellar biosynthesis protein FliP [Xanthomonas axonopodis pv.
citri str. 306]
gi|21108161|gb|AAM36806.1| flagellar biosynthetic protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 262
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 89/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SL +V + ++T + T +++ P +L+++T F R IV +LR +G G
Sbjct: 39 PSLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQ 98
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P N V++ LA+F+T VM P + G+QP +NNQI +TA +P FM
Sbjct: 99 TPSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQI 158
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL F MA + D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 159 RETDLMTFAGMAG----DGKYAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 214
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF
Sbjct: 215 VVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 259
>gi|171319016|ref|ZP_02908143.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
gi|171095771|gb|EDT40724.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
Length = 213
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 63/208 (30%), Positives = 108/208 (51%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
+ L I P ++VT + + IVF++++ +G+ P LV +LAL +T +
Sbjct: 5 QPFDLLVLSMALGIVPAACVLVTSYTKISIVFALVKNAIGIQQTPSALVTNALALIVTMF 64
Query: 98 VMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
VM+P L Q V +P FM+ + ++ + + A
Sbjct: 65 VMAPVLTEVSRNMASGPSREQSRIEWVSNAVGKPVGEFMKKHVDPREQARLIASAERIWP 124
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
++ IL P+F ISE+ +F+IGF++ L F+ ID+IVA I+MAMGM+M PT
Sbjct: 125 EAMAKAAKPDDFFILAPAFAISEITAAFKIGFVLYLAFVAIDLIVANILMAMGMIMFSPT 184
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+S+P K++ F + DGWS L+++L+ ++
Sbjct: 185 IVSIPLKIVLFAMADGWSRLIQSLILTY 212
>gi|238787477|ref|ZP_04631275.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
frederiksenii ATCC 33641]
gi|238724264|gb|EEQ15906.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
frederiksenii ATCC 33641]
Length = 216
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 71/193 (36%), Positives = 111/193 (57%), Gaps = 2/193 (1%)
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
++M T F + IVFS+LR +G+ VPPN+ I LAL +T ++M+P +
Sbjct: 24 MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83
Query: 116 NNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
N+I + P+ F++ NT + F D+ + IL+
Sbjct: 84 PNEIGPLLHHIDEHALGPYRDFLQRNTDAEQTHFFTDIVQTKWPERYRDTIKSNSLLILM 143
Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LIDG
Sbjct: 144 PAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILIDG 203
Query: 234 WSLLVENLVKSFI 246
W LL+ LV S++
Sbjct: 204 WGLLLGQLVGSYL 216
>gi|227820525|ref|YP_002824496.1| type III secretion system protein [Sinorhizobium fredii NGR234]
gi|227339524|gb|ACP23743.1| translocation protein in type III secretion RhcR [Sinorhizobium
fredii NGR234]
Length = 217
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 2/215 (0%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
+T ++ I + + + P+ ++ +T F + IV ++R +G+ PPNLV+ +AL
Sbjct: 2 GETTTNLIPIIIIVSTIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVAL 61
Query: 93 FMTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
+T YV +P + Q M + + A ++ P + T E + F+
Sbjct: 62 ILTVYVTTPLVGEMYRTLSSEQVDMQSMDSMVRAANQLRAPLQAHLTRYTDENERQFFLQ 121
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
IL+P+F+ SEL R+FEIGFL+ LPFL+ID+IV+T++MAMG
Sbjct: 122 ATERIWSEEARASVKTDSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMG 181
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MMM+ PT IS+P K+ FV ++GWS L+ L+ S+
Sbjct: 182 MMMVSPTLISIPLKIFLFVAVNGWSRLMHGLILSY 216
>gi|161503487|ref|YP_001570599.1| type III secretion system protein [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864834|gb|ABX21457.1| hypothetical protein SARI_01563 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 215
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 78/213 (36%), Positives = 126/213 (59%), Gaps = 1/213 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S+ ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL
Sbjct: 2 SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMA 152
++ ++M PTL E + + + + P+ F++ N+ EK+ S F ++
Sbjct: 62 LSLFIMGPTLLAVKERWHPVQVADAPFWMSEWDSKALAPYRQFLQKNSEEKEASYFRNLI 121
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMM
Sbjct: 122 KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +ISLPFK++ F+L GW L + LV+SF
Sbjct: 182 MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214
>gi|13475305|ref|NP_106869.1| type III secretion system protein [Mesorhizobium loti MAFF303099]
gi|14026056|dbj|BAB52655.1| translocation protein in type III secretion system; HrcR
[Mesorhizobium loti MAFF303099]
Length = 221
Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats.
Identities = 72/209 (34%), Positives = 123/209 (58%), Gaps = 2/209 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
I+ + L + ++++ T F + +V ++R +G ++PPN+ + ++AL +T ++
Sbjct: 8 ILALLAVTAGLGLLVLVVVTTTAFVKVSVVLFLVRNALGTQTIPPNIALYAVALILTMFL 67
Query: 99 MSPTLDRSIEMGIQPLMNNQI--TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
+P ++++ + P ++ Q +A + +EP ++ T E+ F+
Sbjct: 68 SAPVVEQTYDRMTDPKLHYQTFDDWVSAAKSGSEPLRDHLKKFTNEEQRQFFLSSTEKVW 127
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
K + IL+PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ P
Sbjct: 128 PAEMRAKATVDDLSILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSP 187
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
T IS+PFK+ FV IDGWS L+ LV S+
Sbjct: 188 TLISVPFKLFVFVAIDGWSKLMHGLVLSY 216
>gi|300693806|ref|YP_003749779.1| hypersensitivity response secretion protein hrcr, type III
secretion system [Ralstonia solanacearum PSI07]
gi|299075843|emb|CBJ35152.1| Hypersensitivity response secretion protein hrcR, type III
secretion system [Ralstonia solanacearum PSI07]
Length = 217
Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats.
Identities = 56/208 (26%), Positives = 118/208 (56%), Gaps = 4/208 (1%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ ++M+P
Sbjct: 9 LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAP 68
Query: 102 TLDRSIEMGIQPLMNNQITETTA----IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+++ + T T + +PF F+ +T ++ + FM A
Sbjct: 69 VGMEAMQRAHVQINAQGGTNITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 128
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+
Sbjct: 129 PAKAALLKDDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 188
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
++++PFK++ FV++DGWS+LV LV ++
Sbjct: 189 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 216
>gi|213029393|ref|ZP_03343840.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 203
Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats.
Identities = 75/202 (37%), Positives = 120/202 (59%), Gaps = 1/202 (0%)
Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
I +LSI P++++M T F + +VFSILR +G+ VPPN+ + AL ++ ++M PTL
Sbjct: 1 ILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLL 60
Query: 105 RSIEMGIQPLMNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
E + T+ + P+ F++ N+ EK+ + F ++ + K
Sbjct: 61 AVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRK 120
Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P +ISLPF
Sbjct: 121 IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF 180
Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
K++ F+L GW L + LV+SF
Sbjct: 181 KLLIFLLAGGWDLTLAQLVQSF 202
>gi|167572947|ref|ZP_02365821.1| type III secretion system protein [Burkholderia oklahomensis C6786]
Length = 216
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 66/214 (30%), Positives = 120/214 (56%), Gaps = 2/214 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
++ ++ + LSI P+L+++ T F + +VF++LR +G +PPN+ + LAL
Sbjct: 2 NLFDQPLQLIAVLFALSILPLLVVLGTSFLKLSVVFALLRNALGTQQIPPNIALHGLALV 61
Query: 94 MTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T +VM+P + ++++ + + P+ F+ NT + F D+
Sbjct: 62 LTMFVMAPVGLAIQDNLAAHPVRIDDKDFTQQVEKTILAPYRAFLERNTAPDQVRFFADV 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
H + + +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ +++AMGM
Sbjct: 122 GHRTWPEPYRNRIPDDSLIVLLPAFTVSQLIEAFKIGLLLFLPFIAIDLIVSNVLLAMGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MM+ P +I+LP K++ FVLI GW L+ L+ SF
Sbjct: 182 MMVSPMTIALPLKLLVFVLIHGWEKLIGQLLLSF 215
>gi|299822252|ref|ZP_07054138.1| flagellar biosynthesis protein FliP [Listeria grayi DSM 20601]
gi|299815781|gb|EFI83019.1| flagellar biosynthesis protein FliP [Listeria grayi DSM 20601]
Length = 255
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 61/227 (26%), Positives = 119/227 (52%), Gaps = 4/227 (1%)
Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
+A+++ S V F I T+LS++ +++M T F IIV + R G+G
Sbjct: 30 YAEAAGFLNDFSINGTSGVNSNVSLFLIVTLLSLSASIVLMFTHFTYCIIVLGLTRQGLG 89
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
++PPN V++ LALF+ ++M P + + +P + + + ++
Sbjct: 90 ATNLPPNQVLVGLALFLAIFMMQPVANEWYQDVWKPGQKEEWKASKVWKETQPILTTYIA 149
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
NT D+++ + + K + L+P+F+++++ + F G I L F+
Sbjct: 150 KNTYRHDINMMLKAEG----KKAVAKKEDASLMALMPAFILTQITQGFLTGMFIYLAFVF 205
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
ID++V+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + ++
Sbjct: 206 IDLVVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMMFQT 252
>gi|259908638|ref|YP_002648994.1| surface presentation of antigens protein SpaP [Erwinia pyrifoliae
Ep1/96]
gi|224964260|emb|CAX55767.1| type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
Length = 223
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 59/212 (27%), Positives = 115/212 (54%), Gaps = 6/212 (2%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ G+ + ++ P L+ TCF +F IV ++R +G+ VP NL + +AL ++ +VM
Sbjct: 6 ISLIGVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVM 65
Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P R + N + + ++ + + + F + +
Sbjct: 66 MPVCQRIADDVESRHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNKVQKKRND 125
Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
+ ++ +H + L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM
Sbjct: 126 DNEVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMM 185
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ P +IS+P K+I FV +DGWSLL + L+ +
Sbjct: 186 MSPVTISIPIKLILFVAMDGWSLLAKGLITQY 217
>gi|172064928|ref|YP_001815640.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6]
gi|171997170|gb|ACB68087.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6]
Length = 218
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 120/215 (55%), Gaps = 4/215 (1%)
Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
+ + +S+ P + ++ T + + ++V +LR +G+ VPPN+V+ +A+ +
Sbjct: 3 QFSDLTGLLITVVAISLIPFVAMVATSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAVLV 62
Query: 95 TFYVMSPTLDRSIEMGIQ----PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
+ YVM+P ++++ P + + A EPF F++ + E++ F+
Sbjct: 63 SAYVMAPIGMQAMQTMQTMHRTPGSDTSLVVLDAFDAAKEPFRAFLKKHAHEREKRFFVR 122
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
A K + +L P+F ++E+ +F+IGFL+ + F+++D+++A ++MAMG
Sbjct: 123 SATVVWPKDMAAKVREDDLIVLAPAFTLTEMADAFKIGFLLYIAFIVVDLVIANVLMAMG 182
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ + PT++++PFK++ FV++ GWS L+ LV ++
Sbjct: 183 LNQVQPTNVAIPFKLLLFVVMSGWSTLIHGLVMTY 217
>gi|323143897|ref|ZP_08078559.1| type III secretion apparatus protein, YscR/HrcR family
[Succinatimonas hippei YIT 12066]
gi|322416324|gb|EFY06996.1| type III secretion apparatus protein, YscR/HrcR family
[Succinatimonas hippei YIT 12066]
Length = 222
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 68/216 (31%), Positives = 123/216 (56%), Gaps = 4/216 (1%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + + + ++ + P L + T + + I+V ++R +G+ VPP +V+ LA+
Sbjct: 5 TSISNPINLIFLIALMGLVPFFLTLATSYIKIIVVIYLIRNALGIQQVPPGMVLSGLAMI 64
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITET----TAIQRVAEPFWVFMRNNTREKDLSLFM 149
++ +VM+P ++ ++ Q ++ T V+ P F+++NT E+ L+ F
Sbjct: 65 LSIFVMAPVGVKTYDLLQQQDVSTVETSPYNVLEIADNVSGPLKDFLQHNTDERILNAFT 124
Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
+ A +IPSF+ISEL ++F+IGFL+ LPF+ ID+I++ I++AM
Sbjct: 125 NTAQRIWPQEIHNVISKDSLIFIIPSFVISELTKAFQIGFLLYLPFIAIDLIISNILLAM 184
Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GMMM+ P +ISLPFK++ FV +DGW L + L+ S+
Sbjct: 185 GMMMVSPMTISLPFKLMLFVTLDGWLKLSQGLLYSY 220
>gi|126442614|ref|YP_001061222.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 668]
gi|134280834|ref|ZP_01767544.1| FliP family [Burkholderia pseudomallei 305]
gi|167725906|ref|ZP_02409142.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
DM98]
gi|167905065|ref|ZP_02492270.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei NCTC
13177]
gi|254182913|ref|ZP_04889506.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
1655]
gi|254299708|ref|ZP_04967157.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
406e]
gi|125657197|gb|ABN48685.1| FliP [Burkholderia pseudomallei]
gi|126222105|gb|ABN85610.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 668]
gi|134247856|gb|EBA47940.1| FliP family [Burkholderia pseudomallei 305]
gi|157809347|gb|EDO86517.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
406e]
gi|184213447|gb|EDU10490.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
1655]
Length = 255
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 5/229 (2%)
Query: 16 LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
A+ + ++ + + T+L + P L I++T F RF IV ++LR
Sbjct: 28 PALAEPLKLPLESLGLRG-DYSVKTQILLFMTLLGLLPALAIVMTSFLRFAIVLALLRQA 86
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
+G+ P VI +AL +T VM P I+P ++IT AI R +P F
Sbjct: 87 LGLQQGLPARVITGVALLLTLLVMRPVGLDVWRHAIEPYDRDEITFREAIARAEQPVSRF 146
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
M T + L ++ D+ K + + + +FM+SEL+ +F+IG ++ LPF
Sbjct: 147 MLAQTSKASLEQISRLSG----ERDVAKPEDHAFVVKAAAFMMSELKTAFQIGAMLFLPF 202
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
LIID++VA+ +MAMGMMML P ISLP K++ FVL+DGW+L V L S
Sbjct: 203 LIIDLVVASTLMAMGMMMLSPLVISLPLKLLLFVLVDGWTLTVNTLTTS 251
>gi|191166033|ref|ZP_03027869.1| type III secretion apparatus protein EpaP [Escherichia coli B7A]
gi|190903981|gb|EDV63694.1| type III secretion apparatus protein EpaP [Escherichia coli B7A]
Length = 221
Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 115/213 (53%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P NN + ++ + ++ ++ + +S F +
Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKHSEPELVSFFEKIQKV 121
Query: 155 SHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + D I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|115360604|ref|YP_777741.1| type III secretion system protein [Burkholderia ambifaria AMMD]
gi|170698360|ref|ZP_02889434.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
gi|254253710|ref|ZP_04947027.1| Type III secretory pathway component EscR [Burkholderia dolosa
AUO158]
gi|115285932|gb|ABI91407.1| Yop virulence translocation R [Burkholderia ambifaria AMMD]
gi|124898355|gb|EAY70198.1| Type III secretory pathway component EscR [Burkholderia dolosa
AUO158]
gi|170136699|gb|EDT04953.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
Length = 218
Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 120/215 (55%), Gaps = 4/215 (1%)
Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
+ + +S+ P + ++ T + + ++V +LR +G+ VPPN+V+ +A+ +
Sbjct: 3 QFSDLTGLLITVVAISLIPFVAMVATSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAVLV 62
Query: 95 TFYVMSPTLDRSIEMGIQ----PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
+ YVM+P ++++ P + + A EPF F++ + E++ F+
Sbjct: 63 SAYVMAPIGMQAMQTMQTMHRTPGSDTSLVVLDAFDAAKEPFRAFLKKHAHEREKRFFVR 122
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
A K + +L P+F ++E+ +F+IGFL+ + F+++D+++A ++MAMG
Sbjct: 123 SATVVWPKDMAAKIREDDLIVLAPAFTLTEMADAFKIGFLLYIAFIVVDLVIANVLMAMG 182
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ + PT++++PFK++ FV++ GWS L+ LV ++
Sbjct: 183 LNQVQPTNVAIPFKLLLFVVMSGWSTLIHGLVMTY 217
>gi|167568050|ref|ZP_02360966.1| type III secretion system protein [Burkholderia oklahomensis EO147]
Length = 216
Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats.
Identities = 66/214 (30%), Positives = 120/214 (56%), Gaps = 2/214 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
++ ++ + LSI P+L+++ T F + +VF++LR +G +PPN+ + LAL
Sbjct: 2 NLFDQPLQLIAVLFALSILPLLVVLGTSFLKLSVVFALLRNALGTQQIPPNIALHGLALV 61
Query: 94 MTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T +VM+P + ++++ + + P+ F+ NT + F D+
Sbjct: 62 LTMFVMAPVGLAIQDNLAAHPVGIDDKDFTQQVEKTILAPYRAFLERNTAPDQVRFFADV 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
H + + +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ +++AMGM
Sbjct: 122 GHRTWPEPYRNRIPDDSLIVLLPAFTVSQLIEAFKIGLLLFLPFIAIDLIVSNVLLAMGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MM+ P +I+LP K++ FVLI GW L+ L+ SF
Sbjct: 182 MMVSPMTIALPLKLLVFVLIHGWEKLIGQLLLSF 215
>gi|33593240|ref|NP_880884.1| type III secretion system protein [Bordetella pertussis Tohama I]
gi|29603234|emb|CAC79579.1| bscR [Bordetella pertussis Tohama I]
gi|33563615|emb|CAE42516.1| putative type III secretion protein [Bordetella pertussis Tohama I]
gi|332382649|gb|AEE67496.1| type III secretion system protein [Bordetella pertussis CS]
Length = 223
Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats.
Identities = 67/204 (32%), Positives = 112/204 (54%), Gaps = 10/204 (4%)
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
P++++M T F + +V +++R +G+ VPPN+ + LAL ++ YVM+P + R
Sbjct: 19 VPLIVVMTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQ 78
Query: 112 QPLMNNQITETTA----------IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
+ T A +R P FM N++ F+ A
Sbjct: 79 ALTAQAGESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEAS 138
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
+L P+F++SEL +F++GFL+ LPF+IID+IV+ I++AMGMMM+ P +IS+
Sbjct: 139 RDLSEDNLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISM 198
Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
P K+ FV++DGW+ L++ LV S+
Sbjct: 199 PLKLFLFVMVDGWTRLIQGLVLSY 222
>gi|310767462|gb|ADP12412.1| surface presentation of antigens protein SpaP [Erwinia sp. Ejp617]
Length = 223
Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats.
Identities = 58/212 (27%), Positives = 115/212 (54%), Gaps = 6/212 (2%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + + ++ P L+ TCF +F IV ++R +G+ VP NL + +AL ++ +VM
Sbjct: 6 ISLIAVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVM 65
Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P R + N + + ++ + + + F ++ +
Sbjct: 66 MPVCQRIADDVESRHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNNVQKKRND 125
Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
+ ++ +H + L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM
Sbjct: 126 DNEVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMM 185
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ P +IS+P K+I FV +DGWSLL + L+ +
Sbjct: 186 MSPVTISIPIKLILFVAMDGWSLLAKGLITQY 217
>gi|331674342|ref|ZP_08375102.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli TA280]
gi|331068436|gb|EGI39831.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli TA280]
Length = 221
Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 114/213 (53%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P NN + ++ + ++ + + +S F +
Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKG 121
Query: 155 SHRNTDITKNDH--IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + D I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|330876194|gb|EGH10343.1| type III secretion system protein YscR [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963708|gb|EGH63968.1| type III secretion system protein YscR [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 218
Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 2/215 (0%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL
Sbjct: 2 NGYQPNLIEIIVVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIAL 61
Query: 93 FMTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
++ YV +P + G + N + P + E + F+
Sbjct: 62 ILSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQ 121
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
+ + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMG
Sbjct: 122 ATETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMG 181
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M M+ PT IS+P K+ FV + GWS L+ L+ S+
Sbjct: 182 MSMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216
>gi|48256988|gb|AAT41683.1| type three secretion apparatus protein R [Edwardsiella ictaluri]
gi|84663102|gb|ABC60084.1| EsaR [Edwardsiella ictaluri 93-146]
Length = 250
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 69/213 (32%), Positives = 120/213 (56%), Gaps = 1/213 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S++ + LS+ P+L++M T F + +VF++LR +G+ +PPNL + LAL
Sbjct: 37 SLTEQPAELIALLVTLSLLPLLIVMGTSFLKLSVVFALLRNALGIQQIPPNLALYGLALI 96
Query: 94 MTFYVMSPTLDRS-IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
+T ++M+P + P + +P+ F+R +T K L F +A
Sbjct: 97 LTLFIMTPVGTAVQARLADAPAQAQTTLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQVA 156
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
S + K +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMM
Sbjct: 157 TKSWPASVREKISDNSLLLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMM 216
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS+PFK++ F+L+ GW ++ L+ S+
Sbjct: 217 MVSPMTISMPFKLLVFILVGGWDKILGQLLLSY 249
>gi|82524597|ref|YP_406192.1| surface presentation of antigens protein SpaP [Shigella dysenteriae
Sd197]
gi|187734451|ref|YP_001883216.1| type III secretion apparatus protein, YscR/HrcR family [Shigella
boydii CDC 3083-94]
gi|32307046|gb|AAP79016.1| Spa24 [Shigella flexneri]
gi|81243995|gb|ABB64704.1| Spa24 [Shigella dysenteriae Sd197]
gi|187426947|gb|ACD06222.1| type III secretion apparatus protein, YscR/HrcR family [Shigella
boydii CDC 3083-94]
gi|320182865|gb|EFW57740.1| surface presentation of antigens protein SpaP [Shigella flexneri
CDC 796-83]
Length = 216
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 57/209 (27%), Positives = 121/209 (57%), Gaps = 3/209 (1%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P L+ TC+ +F IVF ++R +G+ VP N+ + +AL M +VM
Sbjct: 5 MSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFVM 64
Query: 100 SPTLDRSIEMGIQ-PLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P ++ E + P + I++ + +++ +T + L+ F + +
Sbjct: 65 KPIIEAGYENYLNGPQKFDTISDIVRFSDSGLIEYKQYLKKHTDLE-LARFFQRSEEENA 123
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ +N+ L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+GMMM+ P
Sbjct: 124 DLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFIVVDLVISSILLALGMMMMSPI 183
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+IS+P K++ FV +DGW +L + L++ +I
Sbjct: 184 TISVPIKLVLFVALDGWGILSKALIEQYI 212
>gi|257487956|ref|ZP_05641997.1| type III secretion system protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289646626|ref|ZP_06477969.1| type III secretion system protein [Pseudomonas syringae pv. aesculi
str. 2250]
gi|320324517|gb|EFW80594.1| type III secretion system protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320328890|gb|EFW84889.1| type III secretion system protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330879022|gb|EGH13171.1| type III secretion system protein YscR [Pseudomonas syringae pv.
glycinea str. race 4]
gi|331008645|gb|EGH88701.1| type III secretion system protein YscR [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 218
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 2/215 (0%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL
Sbjct: 2 NGYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIAL 61
Query: 93 FMTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
++ YV +P + G + N + P + E + F+
Sbjct: 62 ILSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQ 121
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
+ + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMG
Sbjct: 122 ATETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMG 181
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M M+ PT IS+P K+ FV + GWS L+ L+ S+
Sbjct: 182 MSMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216
>gi|237800781|ref|ZP_04589242.1| type III secretion system protein YscR [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331023639|gb|EGI03696.1| type III secretion system protein YscR [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 218
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 2/215 (0%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL
Sbjct: 2 NGYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIAL 61
Query: 93 FMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
++ YV +P + G + N + P + E + F+
Sbjct: 62 ILSVYVTTPLIGDMYRQVEGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQ 121
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
+ + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMG
Sbjct: 122 ATETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMG 181
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M M+ PT IS+P K+ FV + GWS L+ L+ S+
Sbjct: 182 MSMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216
>gi|33596843|ref|NP_884486.1| type III secretion system protein [Bordetella parapertussis 12822]
gi|33600617|ref|NP_888177.1| type III secretion system protein [Bordetella bronchiseptica RB50]
gi|6708104|gb|AAF25801.1|AF172245_3 BscR [Bordetella bronchiseptica]
gi|33568216|emb|CAE32129.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
gi|33573544|emb|CAE37535.1| putative type III secretion protein [Bordetella parapertussis]
Length = 223
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 67/204 (32%), Positives = 113/204 (55%), Gaps = 10/204 (4%)
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
P++++M T F + +V +++R +G+ VPPN+ + LAL ++ YVM+P + R
Sbjct: 19 VPLIVVMTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQ 78
Query: 112 QPLMNNQITETTA----------IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
+ T A ++R P FM N++ F+ A
Sbjct: 79 ALTAQAGESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEAS 138
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
+L P+F++SEL +F++GFL+ LPF+IID+IV+ I++AMGMMM+ P +IS+
Sbjct: 139 RDLSEDNLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISM 198
Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
P K+ FV++DGW+ L++ LV S+
Sbjct: 199 PLKLFLFVMVDGWTRLIQGLVLSY 222
>gi|207724580|ref|YP_002254977.1| hrp protein hrcr [Ralstonia solanacearum MolK2]
gi|207739216|ref|YP_002257609.1| hrp protein hrcr [Ralstonia solanacearum IPO1609]
gi|206589802|emb|CAQ36763.1| hrp conserved protein hrcr [Ralstonia solanacearum MolK2]
gi|206592589|emb|CAQ59495.1| hrp conserved protein hrcr [Ralstonia solanacearum IPO1609]
Length = 217
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 55/208 (26%), Positives = 116/208 (55%), Gaps = 4/208 (1%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ ++M+P
Sbjct: 9 LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAP 68
Query: 102 TLDRSIEMGI----QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+++ N + +PF F+ +T ++ + FM A
Sbjct: 69 VGMEAMQRAHVQLNAQGGANITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 128
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+
Sbjct: 129 PAKAALLKEDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 188
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
++++PFK++ FV++DGWS+LV LV ++
Sbjct: 189 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 216
>gi|292899278|ref|YP_003538647.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291199126|emb|CBJ46240.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
Length = 223
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 57/212 (26%), Positives = 115/212 (54%), Gaps = 6/212 (2%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + + ++ P ++ TCF +F IV ++R +G+ VP NL + ++L +T ++M
Sbjct: 6 ISLIAVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIM 65
Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P R I+ N + + + + ++ + + + F + ++
Sbjct: 66 MPVCQRIIDDVETRHIDFNQSSAFSQFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNND 125
Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
+ +H + L+P++ +SE++ +F I F I +PF++IDM+V++I++A+GMMM
Sbjct: 126 DNVANTFEHELTRLPLMTLMPAYALSEIQSAFRIAFYIYIPFVVIDMVVSSILLALGMMM 185
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ P +IS+P K+I FV +DGWSLL + L+ +
Sbjct: 186 MSPVTISIPIKLILFVAMDGWSLLTKGLIAQY 217
>gi|171316782|ref|ZP_02905993.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
gi|171098040|gb|EDT42856.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
Length = 216
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 57/206 (27%), Positives = 115/206 (55%), Gaps = 2/206 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
++S+ P + ++VT + + ++V +LR +G+ VPPN+VI +A+ ++ YVM+P
Sbjct: 10 LLVAVVLISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVINGIAILVSVYVMAP 69
Query: 102 TLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
++ P N + EPF F+ + ++ F+ A
Sbjct: 70 VGMSALRDIESKPPAGNASEAVIQILGNAREPFREFLAKHAATREKRFFLRSASIVWPKE 129
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ +L P+F +++L +F+IGFL+ + F+++D+++A +++AMG+ + PT++
Sbjct: 130 AAAALQENDLIVLAPAFALTQLTDAFKIGFLLYIAFIVLDLVIANVLLAMGLNQVNPTNV 189
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
++PFK++ FV++DGWS L+ L+ SF
Sbjct: 190 AIPFKLLLFVVMDGWSTLIHGLIVSF 215
>gi|238793338|ref|ZP_04636964.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
intermedia ATCC 29909]
gi|238727307|gb|EEQ18835.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
intermedia ATCC 29909]
Length = 216
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 74/215 (34%), Positives = 122/215 (56%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + + +LS+ P+L++M T F + IVFS+LR +G+ VPPN+ I LAL
Sbjct: 2 ELLNSSSQLIVLLFLLSVLPLLMVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T ++M+P + N I + P+ F++ NT + ++ F D+
Sbjct: 62 LTIFIMAPVGLDVHARLQDEPLPNDIGALLQHIDEHALVPYRDFLQRNTDTEQVTFFNDI 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ IL+P+F +++L +F+IG L+ LPF+ ID+IV+ I++AMGM
Sbjct: 122 VQTKWPERYRNSVKPNSLLILMPAFTLTQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MM+ P +ISLPFK++ F+LIDGW LL+ LV S++
Sbjct: 182 MMVSPITISLPFKLLIFILIDGWGLLLGQLVGSYL 216
>gi|283478610|emb|CAY74526.1| Surface presentation of antigens protein SpaP [Erwinia pyrifoliae
DSM 12163]
Length = 229
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 59/212 (27%), Positives = 115/212 (54%), Gaps = 6/212 (2%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ G+ + ++ P L+ TCF +F IV ++R +G+ VP NL + +AL ++ +VM
Sbjct: 12 ISLIGVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVM 71
Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P R + N + + ++ + + + F + +
Sbjct: 72 MPVCQRIADDVESRHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNKVQKKRND 131
Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
+ ++ +H + L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM
Sbjct: 132 DNEVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMM 191
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ P +IS+P K+I FV +DGWSLL + L+ +
Sbjct: 192 MSPVTISIPIKLILFVAMDGWSLLAKGLITQY 223
>gi|238785155|ref|ZP_04629149.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
bercovieri ATCC 43970]
gi|238713970|gb|EEQ05988.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
bercovieri ATCC 43970]
Length = 216
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 73/215 (33%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + + LS+ P+L++M T F + IVFS+LR +G+ VPPN+ I LAL
Sbjct: 2 ELLNSSSQLILLLFFLSLLPLLVVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T ++M+P + N+I + P+ F++ NT + + F D+
Sbjct: 62 LTIFIMAPVGLDVHARLQDEPLPNEIGALLEHIDKHALGPYRDFLQRNTDAEQATFFNDI 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGM
Sbjct: 122 VQTKWPERLRDSVKPSSLLILMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MM+ P +ISLPFK++ F+L++GW LL+ LV S++
Sbjct: 182 MMVSPITISLPFKLLIFILVNGWGLLMGQLVGSYL 216
>gi|254517017|ref|ZP_05129075.1| flagellar biosynthetic protein FliP [gamma proteobacterium NOR5-3]
gi|219674522|gb|EED30890.1| flagellar biosynthetic protein FliP [gamma proteobacterium NOR5-3]
Length = 247
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 92/233 (39%), Positives = 139/233 (59%), Gaps = 6/233 (2%)
Query: 15 ELVFAKSSLHDVMNIPA--DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
E A++ + V P+ S + ++ + T+L++ P LI +T F R +IV +IL
Sbjct: 17 ETALAQTGIPLVSVQPSAAGGSDYSMSIQILLLMTLLTLIPAALITMTSFTRILIVLAIL 76
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
R +G P N +I+ L+LF++ ++M+P + + +QP MN + T A+ PF
Sbjct: 77 RQALGTAQTPSNQIILGLSLFLSLFIMAPVFEVAWSTALQPYMNETVGFTEALDAAKIPF 136
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
FM TRE DL LF ++ D + +L+PSF+ SEL+ +F+IGFL+
Sbjct: 137 REFMFGQTRETDLLLFAELGGYG----AFNTPDDVPMVVLLPSFLTSELKTAFQIGFLMF 192
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+PFLIID++VA ++M+MGMMML P ISLPFK++ FVLIDGWSL+ LV SF
Sbjct: 193 VPFLIIDLVVAAVLMSMGMMMLSPMLISLPFKLMLFVLIDGWSLVAATLVTSF 245
>gi|218887527|ref|YP_002436848.1| type III secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758481|gb|ACL09380.1| Yop virulence translocation R [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 216
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 69/212 (32%), Positives = 124/212 (58%), Gaps = 3/212 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
T + +L +AP L+MVT + + ++V S++R +G+ VPP +V+ LA+ ++
Sbjct: 4 TMPLYYIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILSI 63
Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTA---IQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
++M+P ++ ++++ ++ Q + R + P F+ N +K ++ FM A
Sbjct: 64 FIMAPMVESTLDILKTVRVSEQPEPREVVELLDRASPPLRDFLSRNADDKVITAFMGTAK 123
Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
IL+P+F ISEL ++F+IGFL+ LPF+ ID+I++ I++AMGMMM
Sbjct: 124 RIWPKERHDTIRRENLLILVPAFTISELTKAFQIGFLLYLPFVAIDLIISNILLAMGMMM 183
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ P +ISLPFK++ FV +DGW + + L+ S+
Sbjct: 184 VSPMTISLPFKLLLFVTLDGWLKISQGLLLSY 215
>gi|325928699|ref|ZP_08189871.1| flagellar biosynthetic protein FliP [Xanthomonas perforans 91-118]
gi|325540931|gb|EGD12501.1| flagellar biosynthetic protein FliP [Xanthomonas perforans 91-118]
Length = 270
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 89/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%)
Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
SL +V + ++T + T +++ P +L+++T F R IV +LR +G G
Sbjct: 47 PSLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQ 106
Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
P N V++ LA+F+T VM P + G+QP +NNQI +TA +P FM
Sbjct: 107 TPSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQI 166
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
RE DL F MA + D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 167 RETDLMTFAGMAG----DGKYAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 222
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF
Sbjct: 223 VVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 267
>gi|330953282|gb|EGH53542.1| type III secretion system protein YscR [Pseudomonas syringae Cit 7]
Length = 218
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 2/215 (0%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL
Sbjct: 2 NGYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIAL 61
Query: 93 FMTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
++ YV +P + G + N + P + E + F+
Sbjct: 62 ILSVYVTTPLIGDMYRQVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQ 121
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
+ + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMG
Sbjct: 122 ATETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMG 181
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M M+ PT IS+P K+ FV + GWS L+ L+ S+
Sbjct: 182 MSMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216
>gi|74314952|ref|YP_313370.1| surface presentation of antigens protein SpaP [Shigella sonnei
Ss046]
gi|73858429|gb|AAZ91135.1| Spa24 [Shigella sonnei Ss046]
Length = 216
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 57/209 (27%), Positives = 121/209 (57%), Gaps = 3/209 (1%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P L+ TC+ +F IVF ++R +G+ VP N+ + +AL M +VM
Sbjct: 5 MSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFVM 64
Query: 100 SPTLDRSIEMGIQ-PLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P ++ E + P + I++ + +++ +T + L+ F + +
Sbjct: 65 KPIIEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHTDLE-LARFFQRSEEENA 123
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ +N+ L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+GMMM+ P
Sbjct: 124 DLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDLVISSILLALGMMMMSPI 183
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+IS+P K++ FV +DGW +L + L++ +I
Sbjct: 184 TISVPIKLVLFVALDGWGILSKALIEQYI 212
>gi|193063605|ref|ZP_03044694.1| type III secretion apparatus protein EpaP [Escherichia coli E22]
gi|193071824|ref|ZP_03052713.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli E110019]
gi|194426470|ref|ZP_03059025.1| fliP family protein [Escherichia coli B171]
gi|209920317|ref|YP_002294401.1| surface presentation of antigens protein SpaP [Escherichia coli
SE11]
gi|218555411|ref|YP_002388324.1| surface presentation of antigens protein SpaP [Escherichia coli
IAI1]
gi|218706362|ref|YP_002413881.1| surface presentation of antigens protein SpaP [Escherichia coli
UMN026]
gi|260845525|ref|YP_003223303.1| type III secretion protein EpaP [Escherichia coli O103:H2 str.
12009]
gi|260856977|ref|YP_003230868.1| type III secretion protein EpaP [Escherichia coli O26:H11 str.
11368]
gi|260869540|ref|YP_003235942.1| type III secretion protein EpaP [Escherichia coli O111:H- str.
11128]
gi|293406354|ref|ZP_06650280.1| surface presentation antigens protein SpaP [Escherichia coli
FVEC1412]
gi|293412212|ref|ZP_06654935.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
coli B354]
gi|293449185|ref|ZP_06663606.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
coli B088]
gi|298382089|ref|ZP_06991686.1| spaP protein [Escherichia coli FVEC1302]
gi|300815709|ref|ZP_07095933.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 107-1]
gi|300820661|ref|ZP_07100812.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 119-7]
gi|300898067|ref|ZP_07116435.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 198-1]
gi|307310520|ref|ZP_07590168.1| Yop virulence translocation R [Escherichia coli W]
gi|309793922|ref|ZP_07688347.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 145-7]
gi|331664426|ref|ZP_08365332.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli TA143]
gi|331678847|ref|ZP_08379521.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli H591]
gi|14422435|dbj|BAB60842.1| epaP [Escherichia coli]
gi|62085063|gb|AAX62928.1| putative type III secretion apparatus integral membrane protein
component [Escherichia coli]
gi|192930882|gb|EDV83487.1| type III secretion apparatus protein EpaP [Escherichia coli E22]
gi|192954864|gb|EDV85378.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli E110019]
gi|194415778|gb|EDX32045.1| fliP family protein [Escherichia coli B171]
gi|209913576|dbj|BAG78650.1| putative type III secretion protein [Escherichia coli SE11]
gi|218362179|emb|CAQ99796.1| putative type III secretion system protein EpaP [Escherichia coli
IAI1]
gi|218433459|emb|CAR14361.1| putative type III secretion system protein EpaP [Escherichia coli
UMN026]
gi|257755626|dbj|BAI27128.1| type III secretion protein EpaP [Escherichia coli O26:H11 str.
11368]
gi|257760672|dbj|BAI32169.1| type III secretion protein EpaP [Escherichia coli O103:H2 str.
12009]
gi|257765896|dbj|BAI37391.1| type III secretion protein EpaP [Escherichia coli O111:H- str.
11128]
gi|291322275|gb|EFE61704.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
coli B088]
gi|291426360|gb|EFE99392.1| surface presentation antigens protein SpaP [Escherichia coli
FVEC1412]
gi|291468983|gb|EFF11474.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
coli B354]
gi|298277229|gb|EFI18745.1| spaP protein [Escherichia coli FVEC1302]
gi|300358205|gb|EFJ74075.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 198-1]
gi|300526925|gb|EFK47994.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 119-7]
gi|300531638|gb|EFK52700.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 107-1]
gi|306909415|gb|EFN39910.1| Yop virulence translocation R [Escherichia coli W]
gi|308122329|gb|EFO59591.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 145-7]
gi|315062167|gb|ADT76494.1| type III secretion system protein [Escherichia coli W]
gi|323153851|gb|EFZ40087.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli EPECa14]
gi|323180305|gb|EFZ65857.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli 1180]
gi|323377249|gb|ADX49517.1| Yop virulence translocation R [Escherichia coli KO11]
gi|331058357|gb|EGI30338.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli TA143]
gi|331073677|gb|EGI44998.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli H591]
Length = 221
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 114/213 (53%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P NN + ++ + ++ + + +S F +
Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121
Query: 155 SHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + D I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|304414276|ref|ZP_07395644.1| type III secretion system protein [Candidatus Regiella insecticola
LSR1]
gi|304283490|gb|EFL91886.1| type III secretion system protein [Candidatus Regiella insecticola
LSR1]
Length = 216
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/192 (33%), Positives = 109/192 (56%), Gaps = 2/192 (1%)
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
++M T F + +VFS+LR +G+ VPPN+ I AL +T ++M+P + +
Sbjct: 24 MVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGFALVLTLFIMAPVGFDVYDRLQGEAL 83
Query: 116 NNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
+ I ++ P+ F+ NT + + F ++ K I++
Sbjct: 84 PDDIGAFMQHIDEKALVPYRAFLVRNTSVEQTNFFAEIIKKDWPEKYRDKIKPDSLLIMM 143
Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+++ G
Sbjct: 144 PAFTVSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPMTISLPFKLLIFIMVGG 203
Query: 234 WSLLVENLVKSF 245
W LL+ LV S+
Sbjct: 204 WHLLLGQLVGSY 215
>gi|298487104|ref|ZP_07005154.1| type III secretion system inner membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298158347|gb|EFH99417.1| type III secretion system inner membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 218
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 2/215 (0%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL
Sbjct: 2 NGYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIAL 61
Query: 93 FMTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
++ YV +P + G + N + P + E + F+
Sbjct: 62 ILSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQ 121
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
+ + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMG
Sbjct: 122 ATETIWSPEARADLCDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMG 181
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M M+ PT IS+P K+ FV + GWS L+ L+ S+
Sbjct: 182 MSMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216
>gi|13449100|ref|NP_085316.1| Type III secretion protein [Shigella flexneri 5a]
gi|31983543|ref|NP_858286.1| surface presentation of antigens protein SpaP [Shigella flexneri 2a
str. 301]
gi|60415913|sp|P0A1L3|SPAP_SHIFL RecName: Full=Surface presentation of antigens protein spaP;
AltName: Full=Spa24 protein
gi|60415914|sp|P0A1L4|SPAP_SHISO RecName: Full=Surface presentation of antigens protein spaP;
AltName: Full=Spa24 protein
gi|13310648|gb|AAK18472.1|AF348706_161 Type III secretion protein [Shigella flexneri 5a]
gi|152795|gb|AAA26544.1| spa24 [Shigella flexneri]
gi|303893|dbj|BAA02829.1| spa24 [Shigella flexneri]
gi|829080|dbj|BAA09162.1| ORF22 [Shigella sonnei]
gi|12329097|emb|CAC05828.1| Spa24, component of the Mxi-Spa secretion machinery [Shigella
flexneri]
gi|18462535|gb|AAL72307.1| Spa24, component of the Mxi-Spa secretion machinery [Shigella
flexneri 2a str. 301]
gi|281603908|gb|ADA76891.1| surface presentation of antigens protein SpaP [Shigella flexneri
2002017]
Length = 216
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 57/209 (27%), Positives = 121/209 (57%), Gaps = 3/209 (1%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P L+ TC+ +F IVF ++R +G+ VP N+ + +AL M +VM
Sbjct: 5 MSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFVM 64
Query: 100 SPTLDRSIEMGIQ-PLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P ++ E + P + I++ + +++ +T + L+ F + +
Sbjct: 65 KPIIEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHTDLE-LARFFQRSEEENA 123
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ +N+ L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+GMMM+ P
Sbjct: 124 DLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDLVISSILLALGMMMMSPI 183
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+IS+P K++ FV +DGW +L + L++ +I
Sbjct: 184 TISVPIKLVLFVALDGWGILSKALIEQYI 212
>gi|301027456|ref|ZP_07190793.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 69-1]
gi|300394964|gb|EFJ78502.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 69-1]
gi|323966655|gb|EGB62087.1| YscR/HrcR family protein type III secretion lipoprotein
[Escherichia coli M863]
gi|323978518|gb|EGB73600.1| YscR/HrcR family protein type III secretion lipoprotein
[Escherichia coli TW10509]
Length = 221
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 114/213 (53%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P NN + ++ + ++ + + +S F +
Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121
Query: 155 SHRNTDITKNDH--IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + D I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|289624375|ref|ZP_06457329.1| type III secretion system protein [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|330868641|gb|EGH03350.1| type III secretion system protein YscR [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 218
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 2/215 (0%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL
Sbjct: 2 NGYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIAL 61
Query: 93 FMTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
++ YV +P + G + N + P + E + F+
Sbjct: 62 ILSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQ 121
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
+ + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++M MG
Sbjct: 122 ATETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMTMG 181
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M M+ PT IS+P K+ FV + GWS L+ L+ S+
Sbjct: 182 MSMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216
>gi|284922803|emb|CBG35891.1| type III secretion system protein [Escherichia coli 042]
Length = 221
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 114/213 (53%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGIALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P NN + ++ + ++ + + +S F +
Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121
Query: 155 SHRNTDITKNDH--IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + D I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|118592626|ref|ZP_01550016.1| Type III secretory pathway, component EscR [Stappia aggregata IAM
12614]
gi|118434677|gb|EAV41328.1| Type III secretory pathway, component EscR [Stappia aggregata IAM
12614]
Length = 212
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/210 (30%), Positives = 114/210 (54%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ + P + ++ T F + +V ++R +G+ +PPN+ + +LA+ ++ Y+
Sbjct: 3 PLNLILALGAAAFVPFMAVVATSFIKIAVVLLLVRNALGVQQIPPNMALNALAIILSGYI 62
Query: 99 MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P ++ + + N N A P F+ + ++ F+
Sbjct: 63 MAPVFFQTFMIVQEGNFNFGNLEGLQEAYNASKGPLIEFLDKHAEGREKLFFLKATAELW 122
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
D +++P+F IS+LR +FEIGFL+ LPF+ ID++V+ I++AMGMMM+ P
Sbjct: 123 PADLAAMADENSIFVILPAFTISQLREAFEIGFLLYLPFVAIDLVVSNILLAMGMMMVSP 182
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ISLPFK+ FV++DGWS L+ LVK++I
Sbjct: 183 LTISLPFKLFLFVMVDGWSRLILGLVKTYI 212
>gi|304311653|ref|YP_003811251.1| Type III secretory pathway protein [gamma proteobacterium HdN1]
gi|301797386|emb|CBL45606.1| Type III secretory pathway protein [gamma proteobacterium HdN1]
Length = 221
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 67/201 (33%), Positives = 116/201 (57%), Gaps = 6/201 (2%)
Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
+AP + +MVT F + ++V S+LR +G+ PPN+V+ LA+ ++ YVM P L ++ +
Sbjct: 20 MAPFVAVMVTAFTKLVVVLSLLRNSLGLQQTPPNVVLNGLAIILSLYVMYPVLLQTQSLI 79
Query: 111 IQPLMNN------QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
L +P F+ +++E + F++ A D
Sbjct: 80 TSHLKETPEAKLTVDRLIEIFDVGKKPLKDFLIRHSKESERHFFLESARQLLPEEDRNNI 139
Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
++ +++P+F +SEL +F+IGFL+ LPFLIID++V+ ++MA+G+ ML PT +SLPFK
Sbjct: 140 HEDDFLVIVPAFTVSELSAAFQIGFLLFLPFLIIDLLVSNLLMALGIAMLSPTQVSLPFK 199
Query: 225 VIFFVLIDGWSLLVENLVKSF 245
++ FV I GW+ L+ LV ++
Sbjct: 200 LLLFVFISGWTQLIHGLVLTY 220
>gi|206895630|ref|YP_002246700.1| flagellar biosynthetic protein FliP [Coprothermobacter
proteolyticus DSM 5265]
gi|206738247|gb|ACI17325.1| flagellar biosynthetic protein FliP [Coprothermobacter
proteolyticus DSM 5265]
Length = 218
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 62/213 (29%), Positives = 118/213 (55%), Gaps = 8/213 (3%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
S +V+ + T+ ++AP ++ T F R ++VF+ +R+ +G+ PP V +LAL
Sbjct: 13 GSGGLSMVQLIVLLTVFTLAPSFIMFFTSFLRILVVFAFMRSALGLQQFPPAQVFTALAL 72
Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
+TF +M P + + P Q+ + +P +M + ++L+ ++
Sbjct: 73 ILTFLIMGPVFSQVYQQAWVPYSQGQMDFQQFLSAAEKPVGDWMLKQVKPEELNTMASIS 132
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ +N + + L +FM+SEL+ +F +G L+ LPF+ +D+I+A+++M++GM
Sbjct: 133 GTDPKNPN--------FTTLASAFMVSELKTAFTMGLLLYLPFIALDVIIASVLMSLGMF 184
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+PP ISLP K++ FV +GW ++ LV+SF
Sbjct: 185 MIPPAMISLPLKILLFVAANGWDTVIMGLVRSF 217
>gi|15803389|ref|NP_289422.1| surface presentation of antigens protein SpaP [Escherichia coli
O157:H7 EDL933]
gi|15832979|ref|NP_311752.1| surface presentation of antigens protein SpaP [Escherichia coli
O157:H7 str. Sakai]
gi|168747669|ref|ZP_02772691.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
str. EC4113]
gi|168753791|ref|ZP_02778798.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
str. EC4401]
gi|168759981|ref|ZP_02784988.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
str. EC4501]
gi|168766846|ref|ZP_02791853.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
str. EC4486]
gi|168775730|ref|ZP_02800737.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
str. EC4196]
gi|168778867|ref|ZP_02803874.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
str. EC4076]
gi|168785699|ref|ZP_02810706.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
str. EC869]
gi|168799986|ref|ZP_02824993.1| fliP family protein [Escherichia coli O157:H7 str. EC508]
gi|195936471|ref|ZP_03081853.1| surface presentation of antigens protein SpaP [Escherichia coli
O157:H7 str. EC4024]
gi|208806889|ref|ZP_03249226.1| fliP family protein [Escherichia coli O157:H7 str. EC4206]
gi|208812978|ref|ZP_03254307.1| fliP family protein [Escherichia coli O157:H7 str. EC4045]
gi|208820470|ref|ZP_03260790.1| fliP family protein [Escherichia coli O157:H7 str. EC4042]
gi|209399259|ref|YP_002272331.1| fliP family protein [Escherichia coli O157:H7 str. EC4115]
gi|217326775|ref|ZP_03442858.1| fliP family protein [Escherichia coli O157:H7 str. TW14588]
gi|254794806|ref|YP_003079643.1| surface presentation of antigens protein SpaP [Escherichia coli
O157:H7 str. TW14359]
gi|261226166|ref|ZP_05940447.1| putative integral membrane protein-component of typeIII secretion
apparatus [Escherichia coli O157:H7 str. FRIK2000]
gi|261256580|ref|ZP_05949113.1| putative integral membrane protein-component of typeIII secretion
apparatus [Escherichia coli O157:H7 str. FRIK966]
gi|12517367|gb|AAG57981.1|AE005515_3 putative integral membrane protein-component of typeIII secretion
apparatus [Escherichia coli O157:H7 str. EDL933]
gi|13363197|dbj|BAB37148.1| type III secretion protein EpaP [Escherichia coli O157:H7 str.
Sakai]
gi|187768768|gb|EDU32612.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
str. EC4196]
gi|188017894|gb|EDU56016.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
str. EC4113]
gi|189003561|gb|EDU72547.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
str. EC4076]
gi|189358717|gb|EDU77136.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
str. EC4401]
gi|189363672|gb|EDU82091.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
str. EC4486]
gi|189369400|gb|EDU87816.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
str. EC4501]
gi|189373795|gb|EDU92211.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
str. EC869]
gi|189377645|gb|EDU96061.1| fliP family protein [Escherichia coli O157:H7 str. EC508]
gi|208726690|gb|EDZ76291.1| fliP family protein [Escherichia coli O157:H7 str. EC4206]
gi|208734255|gb|EDZ82942.1| fliP family protein [Escherichia coli O157:H7 str. EC4045]
gi|208740593|gb|EDZ88275.1| fliP family protein [Escherichia coli O157:H7 str. EC4042]
gi|209160659|gb|ACI38092.1| fliP family protein [Escherichia coli O157:H7 str. EC4115]
gi|217319142|gb|EEC27567.1| fliP family protein [Escherichia coli O157:H7 str. TW14588]
gi|254594206|gb|ACT73567.1| putative integral membrane protein-component of typeIII secretion
apparatus [Escherichia coli O157:H7 str. TW14359]
Length = 221
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 114/213 (53%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P NN + ++ + ++ + + +S F +
Sbjct: 62 FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121
Query: 155 SHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + D I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|261344591|ref|ZP_05972235.1| type III secretion apparatus protein, YscR/HrcR family [Providencia
rustigianii DSM 4541]
gi|282567505|gb|EFB73040.1| type III secretion apparatus protein, YscR/HrcR family [Providencia
rustigianii DSM 4541]
Length = 221
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 55/208 (26%), Positives = 109/208 (52%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P ++ TC+ + IV ++R MG+ VP + + +AL ++ +VM
Sbjct: 8 IPLLVLIAFSTLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIALLLSIFVM 67
Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P L ++ N + + + ++ + + ++ F +
Sbjct: 68 MPILQDVNNHMRSERVDFSNVESIDNFVDNGLGRYKDYLVKYSDPQLVTFFESVQQGKSE 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+GMMM+ P
Sbjct: 128 AEVSEEQAEPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMSPV 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+IS+P K+I FV IDGWSL+ + LV +
Sbjct: 188 TISVPVKLILFVAIDGWSLISKGLVMQY 215
>gi|292488067|ref|YP_003530944.1| surface presentation of antigens protein SpaP [Erwinia amylovora
CFBP1430]
gi|291553491|emb|CBA20536.1| Surface presentation of antigens protein SpaP [Erwinia amylovora
CFBP1430]
Length = 229
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 57/212 (26%), Positives = 115/212 (54%), Gaps = 6/212 (2%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + + ++ P ++ TCF +F IV ++R +G+ VP NL + ++L +T ++M
Sbjct: 12 ISLIAVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIM 71
Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P R I+ N + + + + ++ + + + F + ++
Sbjct: 72 MPVCQRIIDDVETRHIDFNQSSAFSQFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNND 131
Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
+ +H + L+P++ +SE++ +F I F I +PF++IDM+V++I++A+GMMM
Sbjct: 132 DNVANTFEHELTRLPLMTLMPAYALSEIQSAFRIAFYIYIPFVVIDMVVSSILLALGMMM 191
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ P +IS+P K+I FV +DGWSLL + L+ +
Sbjct: 192 MSPVTISIPIKLILFVAMDGWSLLTKGLIAQY 223
>gi|238759389|ref|ZP_04620554.1| Surface presentation of antigens protein spaP [Yersinia aldovae
ATCC 35236]
gi|238702416|gb|EEP94968.1| Surface presentation of antigens protein spaP [Yersinia aldovae
ATCC 35236]
Length = 223
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 59/211 (27%), Positives = 116/211 (54%), Gaps = 4/211 (1%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ I ++ P ++ TC+ + IV ++R MG+ VP +L + +AL ++ +VM
Sbjct: 8 IPLLAIIAFSTLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSSLTLNGIALLLSLFVM 67
Query: 100 SPTLDRSIEMGI--QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + + Q +N + ++ + +++ + + L+ F +
Sbjct: 68 MPVIQDVNQYMRTEQVDFSNVDSVDNFVEGGLGSYKAYLKKYSDPELLNFFESLQQGRSE 127
Query: 158 NTDITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
+ + D L+P++ +SE++ +FEIGF I LPF++ID+I+++I++A+GMMM+
Sbjct: 128 EQAMDEADTREPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLIISSILLALGMMMMS 187
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
P +IS+P K+I FV IDGWSL+ + L+ ++
Sbjct: 188 PVTISVPVKLILFVAIDGWSLISKGLIMQYM 218
>gi|300697461|ref|YP_003748122.1| Hypersensitivity response secretion protein hrcR, type III
secretion system [Ralstonia solanacearum CFBP2957]
gi|299074185|emb|CBJ53730.1| Hypersensitivity response secretion protein hrcR, type III
secretion system [Ralstonia solanacearum CFBP2957]
Length = 217
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 57/208 (27%), Positives = 119/208 (57%), Gaps = 4/208 (1%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ ++M+P
Sbjct: 9 LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAP 68
Query: 102 TLDRSIEMG-IQPLMNNQITETTA---IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+++ +Q T T + +PF F+ +T ++ + FM A
Sbjct: 69 VGMEAMQRAHVQLNAQGGATITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 128
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+
Sbjct: 129 PAKAALLKEDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 188
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
++++PFK++ FV++DGWS+LV LV ++
Sbjct: 189 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 216
>gi|300936202|ref|ZP_07151138.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 21-1]
gi|300458659|gb|EFK22152.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 21-1]
Length = 221
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 59/213 (27%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF--MDMA 152
+VM P NN + ++ + ++ + + +S F +
Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFGKIQKV 121
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+SS N +I +++I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|171322880|ref|ZP_02911585.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
gi|171091754|gb|EDT37284.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
Length = 216
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P
Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69
Query: 102 TLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + ++ Q T+ A EPF F+ ++RE++ F+ A
Sbjct: 70 IGFAAQQQLQGQTLSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKA 129
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++
Sbjct: 130 AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
++PFK++ FV++DGWS LV LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215
>gi|170018891|ref|YP_001723845.1| surface presentation of antigens protein SpaP [Escherichia coli
ATCC 8739]
gi|169753819|gb|ACA76518.1| Yop virulence translocation R [Escherichia coli ATCC 8739]
Length = 221
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 58/213 (27%), Positives = 118/213 (55%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH- 153
+VM P NN + ++ + ++ + + ++ F +
Sbjct: 62 FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121
Query: 154 -SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIFDDDNIPIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|312172195|emb|CBX80452.1| Surface presentation of antigens protein SpaP [Erwinia amylovora
ATCC BAA-2158]
Length = 229
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 58/212 (27%), Positives = 117/212 (55%), Gaps = 6/212 (2%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + + ++ P ++ TCF +F IV ++R +G+ VP NL + ++L +T ++M
Sbjct: 12 ISLIAVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIM 71
Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P R I+ N + + + + ++ + + + F + ++
Sbjct: 72 MPVCQRIIDDVETRHIDFNQSSAFSQFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNND 131
Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
+T +H + L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM
Sbjct: 132 DTVANTFEHELTRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMM 191
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ P +IS+P K+I FV +DGWSLL + L+ +
Sbjct: 192 MSPVTISIPIKLILFVAMDGWSLLTKGLIAQY 223
>gi|157159039|ref|YP_001464197.1| surface presentation of antigens protein SpaP [Escherichia coli
E24377A]
gi|157081069|gb|ABV20777.1| type III secretion apparatus protein EpaP [Escherichia coli
E24377A]
Length = 221
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 114/213 (53%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRKALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P NN + ++ + ++ + + +S F +
Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121
Query: 155 SHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + D I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|315186373|gb|EFU20133.1| flagellar biosynthetic protein FliP [Spirochaeta thermophila DSM
6578]
Length = 258
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 78/232 (33%), Positives = 129/232 (55%), Gaps = 6/232 (2%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
+ + P ++ + TIL++AP +L++ T F R +V +R +
Sbjct: 31 ALNIPFVDLTIREPQSDQEVALSIQLLLLLTILTLAPSILVLTTSFLRIALVLDFIRRAL 90
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G+ VPP V++ ++LF+T +VM PT + PL +I A R P +FM
Sbjct: 91 GLQQVPPTQVLMGISLFLTLFVMWPTFQEVYDDSFVPLSRGEIDVEEAYGRAVGPLRIFM 150
Query: 137 RNNTRE--KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
+ + + LFM M+ +T + ILIP+F++ EL +F+IG ++ +P
Sbjct: 151 YRQMQNNVEPIRLFMRMSGLPRPDT----LADVPTHILIPAFILHELTVAFKIGIILYIP 206
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
F+IIDM+VA+ +M+MGM+MLPP IS PFK++ FVL+DGW+L+ + L+ SF+
Sbjct: 207 FIIIDMVVASTLMSMGMIMLPPVMISFPFKLLLFVLVDGWTLITQQLLGSFV 258
>gi|88704277|ref|ZP_01101991.1| flagellar biosynthetic protein FliP [Congregibacter litoralis KT71]
gi|88701328|gb|EAQ98433.1| flagellar biosynthetic protein FliP [Congregibacter litoralis KT71]
Length = 248
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 94/247 (38%), Positives = 147/247 (59%), Gaps = 6/247 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA--DLSISTWIVRTFGIFTILSIAPILLIM 58
++ + L+ PE A++ + V P+ + + ++ + T+L++ P LI
Sbjct: 4 LLAIVAPLMLLLMPETALAQAGIPLVSVQPSAAGGNDYSMSIQILLLMTLLTLIPAALIT 63
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R +IV +ILR +G P N +I+ L+LF++ ++M+P + + +QP MN
Sbjct: 64 MTSFTRILIVLAILRQALGTAQTPSNQIILGLSLFLSLFIMAPVFETAWVTALQPYMNET 123
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
+ + A+ PF FM TRE DL LF ++ NT D + +L+PSF+
Sbjct: 124 VGFSEALDAAKIPFREFMFGQTRETDLLLFAELGGYEPFNT----RDDVPMVVLLPSFLT 179
Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
SEL+ +F+IGFL+ +PFLIID++VA ++M+MGMMML P ISLPFK++ FVLIDGWSL+
Sbjct: 180 SELKTAFQIGFLMFVPFLIIDLVVAAVLMSMGMMMLSPMLISLPFKLMLFVLIDGWSLIA 239
Query: 239 ENLVKSF 245
LV SF
Sbjct: 240 ATLVTSF 246
>gi|312884595|ref|ZP_07744299.1| type III secretion system protein [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367907|gb|EFP95455.1| type III secretion system protein [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 216
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 66/209 (31%), Positives = 117/209 (55%), Gaps = 2/209 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
++ + LS+ P+ +M T F + IV S+LR +G+ +PPN+ I LAL +T +
Sbjct: 7 PIQLIVVLFCLSLLPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLALILTMFT 66
Query: 99 MSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P + + ++V P++ F+ +NT +K + F + H
Sbjct: 67 MAPVGMAIRDNLAAHPVEWASPDVFHQISEQVIAPYYKFLSHNTSDKQIQFFSQIGHKIW 126
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ +++P+F +S+L +F+IGFL+ LPF+ ID++V+ I++AMGMMM+ P
Sbjct: 127 PEQYQHELSKESLLVMVPAFTMSQLIEAFKIGFLLYLPFVAIDLVVSNILLAMGMMMVSP 186
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+I+LPFK++ F+L+ GW L+ L+ SF
Sbjct: 187 MTIALPFKLLIFILMGGWDKLIGQLMGSF 215
>gi|238798580|ref|ZP_04642057.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC
43969]
gi|238717600|gb|EEQ09439.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC
43969]
Length = 207
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 67/197 (34%), Positives = 111/197 (56%), Gaps = 4/197 (2%)
Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
L+ V A+ + + ++T + T LS P L+M+T F R IIV
Sbjct: 15 FTLLCSPAVMAQLPGIISQPLANGGQSWSLPIQTLVLITSLSFLPAALLMMTSFTRIIIV 74
Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
+LR +G S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ +
Sbjct: 75 LGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKG 134
Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
A+P FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IG
Sbjct: 135 AQPLREFMLRQTRESDLALYARLANLP----PLEGPEMVPLRILLPAYVTSELKTAFQIG 190
Query: 189 FLIILPFLIIDMIVATI 205
F + +PFLIID++VA++
Sbjct: 191 FTVFIPFLIIDLVVASV 207
>gi|284007639|emb|CBA73298.1| type III secretion inner membrane protein YscR,SpaR,HrcR,EscR
[Arsenophonus nasoniae]
Length = 209
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 116/208 (55%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
++ + LSI P+ +M T F + IV S+LR +G+ +PPN+ I LAL +T + M
Sbjct: 1 MQLIVVLFCLSIMPLFAVMGTSFLKISIVLSMLRNALGIQQIPPNMAIYGLALILTLFTM 60
Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + N+ + V P+ F++ NT E+ + F + +
Sbjct: 61 APVGFAIRDNIKAQPIDWNSVNSMEQIDSSVITPYRDFLKKNTSEEQIKFFTQIGYKIWP 120
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
T +++P+F +S+L +F+IGFLI LPF+ ID+IV+ +++AMGMMM+ P
Sbjct: 121 KQYQTSLSPNSLLVMVPAFTMSQLIAAFKIGFLIYLPFVAIDLIVSNVLLAMGMMMVSPM 180
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+I+LPFK++ F+L+ GW L+ L+ SF
Sbjct: 181 TIALPFKLLIFILMGGWDKLIGQLMVSF 208
>gi|318607487|emb|CBY28985.1| type III secretion inner membrane protein
(YscR,SpaR,HrcR,EscR,homologous to flagellar export
components) [Yersinia enterocolitica subsp. palearctica
Y11]
Length = 216
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 74/215 (34%), Positives = 120/215 (55%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + + +LS+ P+L++M T F + IV S+LR +G+ VPPN+ I LAL
Sbjct: 2 ELLNSSSQLIVLLFLLSLLPLLMVMGTSFLKLSIVLSLLRNALGVQQVPPNIAIYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T ++M+P + N + + EP+ F++ NT + F D+
Sbjct: 62 LTIFIMAPVGLDVHARLQDEPLPNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDI 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGM
Sbjct: 122 VQTKWPVRYRDTIKPNSLLILMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MM+ P +ISLPFK++ F+LIDGW LL+ LV S++
Sbjct: 182 MMVSPITISLPFKLLIFILIDGWGLLLGQLVGSYL 216
>gi|332159962|ref|YP_004296539.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325664192|gb|ADZ40836.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330862413|emb|CBX72572.1| virulence protein yscR [Yersinia enterocolitica W22703]
Length = 216
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 75/215 (34%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + + +LS+ P+L++M T F + IVFS+LR +G+ VPPN+ I LAL
Sbjct: 2 ELLNSSSQLIVLLFLLSLLPLLMVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T ++M+P + N + + EP+ F++ NT + F D+
Sbjct: 62 LTIFIMAPVGLDVHARLQDEPLPNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDI 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGM
Sbjct: 122 VQTKWPVRYRDTIKPNSLLILMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MM+ P +ISLPFK++ F+LIDGW LL+ LV S++
Sbjct: 182 MMVSPITISLPFKLLIFILIDGWGLLLGQLVGSYL 216
>gi|194292014|ref|YP_002007921.1| type III secretion system protein [Cupriavidus taiwanensis LMG
19424]
gi|193225918|emb|CAQ71865.1| SctR: non flagellar T3S system inner membrane conserved protein.
FliP/mopC/spaP family [Cupriavidus taiwanensis LMG
19424]
Length = 219
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 74/217 (34%), Positives = 122/217 (56%), Gaps = 4/217 (1%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
S V I IAP + +MVT + + +IVF +LR +G+ VPPN+V+ +A+
Sbjct: 2 NSGLYNPVLILTIILTFGIAPFVALMVTSYTKLVIVFGLLRAALGLQQVPPNMVLNGIAI 61
Query: 93 FMTFYVMSPT----LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
+T Y+M+P D N T V+ P F+ +T E++ + F
Sbjct: 62 ILTAYIMAPIGSDAFDAIKRRADANAAFNVNDVVTVYDAVSGPLKEFLVKHTEERNRTFF 121
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A + +LIPSF +SEL R+F+IGF++ L F+++D+IVA I++A
Sbjct: 122 VQSAKRIWPEGRADDLKSDDMMVLIPSFTLSELTRAFQIGFVVYLVFVVVDLIVAAILLA 181
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GM M+ PT+IS+PFK++ FV+++GW+ L++ LV S+
Sbjct: 182 LGMSMVAPTTISVPFKLLLFVMLEGWTQLIQGLVLSY 218
>gi|307718614|ref|YP_003874146.1| hypothetical protein STHERM_c09260 [Spirochaeta thermophila DSM
6192]
gi|306532339|gb|ADN01873.1| hypothetical protein STHERM_c09260 [Spirochaeta thermophila DSM
6192]
Length = 258
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 78/232 (33%), Positives = 128/232 (55%), Gaps = 6/232 (2%)
Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
+ + P ++ + TIL++AP +L++ T F R +V +R +
Sbjct: 31 ALNIPFVDLTIREPQSDQEVALSIQLLLLLTILTLAPSILVLTTSFLRIALVLDFIRRAL 90
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
G+ VPP V++ ++LF+T +VM PT + PL +I A R P +FM
Sbjct: 91 GLQQVPPTQVLMGISLFLTLFVMWPTFQEVYDDSFVPLSRGEIGVEEAYGRAVGPLRIFM 150
Query: 137 RNNT--REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
+ + LFM M+ +T + ILIP+F++ EL +F+IG ++ +P
Sbjct: 151 YRQMQNDVEPIRLFMRMSGLPRPDT----LADVPTHILIPAFILHELTVAFKIGIILYIP 206
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
F+IIDM+VA+ +M+MGM+MLPP IS PFK++ FVL+DGW+L+ + L+ SF+
Sbjct: 207 FIIIDMVVASTLMSMGMIMLPPVMISFPFKLLLFVLVDGWTLITQQLLGSFV 258
>gi|76574805|gb|ABA47279.1| HrcR [Pseudomonas cichorii]
Length = 209
Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats.
Identities = 64/209 (30%), Positives = 119/209 (56%), Gaps = 2/209 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ LS+ P+L+I+ T F + +V I R +G+ PPN+ + +AL T ++M
Sbjct: 1 MTLALFLGALSLVPLLMIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIM 60
Query: 100 SPTLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P + + + ++N +A + V EP +FM N + ++
Sbjct: 61 APVFNEMGQRVKKLPERLDNFAAMESAGKHVIEPLRLFMTRNIDPDIQTHLLENTQRMWP 120
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
++ + +++P+F++SEL+ F+IGFLI +PF++ID+IV+ I++A+GM M+ P
Sbjct: 121 KEMSSQASRDDLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPM 180
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ISLP K++ FVL+DGW+ L++ L S++
Sbjct: 181 TISLPLKILLFVLVDGWTRLLDGLFYSYM 209
>gi|82470758|gb|ABB77410.1| HrcR [Pantoea stewartii subsp. stewartii]
Length = 217
Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats.
Identities = 69/205 (33%), Positives = 117/205 (57%), Gaps = 2/205 (0%)
Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
LS+ PIL+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+P
Sbjct: 13 LFLGALSLIPILMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72
Query: 104 DRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
++ + Q + N T+I P FM +NT L + + +
Sbjct: 73 NQMQQQFSQAPADFSNVDNLRTSITNGVTPLQKFMAHNTDPDILIHLQENSVRMWPKSMS 132
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 133 ENISKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192
Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
P K++ FVLI+GW+ L++ L S++
Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217
>gi|254469150|ref|ZP_05082555.1| type III secretion apparatus protein, YscR/HrcR family
[Pseudovibrio sp. JE062]
gi|211960985|gb|EEA96180.1| type III secretion apparatus protein, YscR/HrcR family
[Pseudovibrio sp. JE062]
Length = 214
Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats.
Identities = 64/213 (30%), Positives = 116/213 (54%), Gaps = 2/213 (0%)
Query: 36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95
++ ++++ P L I+ T F + +V ++R +G+ +PPN+ + +LA+ ++
Sbjct: 2 TSDPFTLILALVVVALVPFLAIVATSFIKLSVVLLLVRNALGVQQIPPNMALNALAIILS 61
Query: 96 FYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
Y+M P ++ E + T P F+ + K+ + F++ +
Sbjct: 62 GYIMLPVFLQTFEILEKGNYSIATVEDMKTTFVAAKGPLEKFLAKHADSKEKAFFLEASR 121
Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
IL+P++ +S+LR +FEIGFL+ LPFL ID++V+ I++AMGMMM
Sbjct: 122 QLWPAEVADSMSADSIAILLPAYTVSQLREAFEIGFLLYLPFLAIDLVVSNILLAMGMMM 181
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ P +ISLPFK+ FV +DGWS L+ L+K+++
Sbjct: 182 VSPLTISLPFKLFLFVAVDGWSRLILGLIKTYV 214
>gi|83718329|ref|YP_439033.1| surface presentation of antigens protein SpaP [Burkholderia
thailandensis E264]
gi|167577439|ref|ZP_02370313.1| surface presentation of antigens protein SpaP [Burkholderia
thailandensis TXDOH]
gi|167615590|ref|ZP_02384225.1| surface presentation of antigens protein SpaP [Burkholderia
thailandensis Bt4]
gi|257142141|ref|ZP_05590403.1| surface presentation of antigens protein SpaP [Burkholderia
thailandensis E264]
gi|83652154|gb|ABC36218.1| type III secretion system protein BsaW [Burkholderia thailandensis
E264]
Length = 230
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 56/221 (25%), Positives = 115/221 (52%), Gaps = 14/221 (6%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM
Sbjct: 6 IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65
Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + ++ N + I + ++ + + + F + +
Sbjct: 66 MPVAQSAYRYLQHHPLDVMNGSSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQAARLK 125
Query: 158 NT------------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
D L+P++ ++E++ +F+IGF + LPFL++DM+V+++
Sbjct: 126 RDDADAADADADAGDEPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSV 185
Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++A+GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 186 LLALGMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 226
>gi|203284196|ref|YP_002221936.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
gi|203287735|ref|YP_002222750.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
gi|201083639|gb|ACH93230.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
gi|201084955|gb|ACH94529.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
Length = 254
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 84/258 (32%), Positives = 137/258 (53%), Gaps = 16/258 (6%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
M + F L FA++ + + ++ I +I+++
Sbjct: 1 MNKKLSFLLLFGVVNFAFAQTKSLQPTTGLNFPFVDFLNSFGGGIVFPLQLLLILSIITL 60
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
+P L+++T F R IV +R + + PPN VI+ LALF+T + M PT + +
Sbjct: 61 SPAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKDAY 120
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNN---TREKDLSLFMDMAHSSHRNTDITKNDHIE 168
PL +++I R P FM +R +++ LFM ++ + +
Sbjct: 121 LPLRDSKINFNEFYDRGIAPLRNFMYKQMSNSRHEEIRLFMSISDYAKPK----NFSEVP 176
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+LI SF++ EL+ +F++G LI LPF+IID+IVA ++MAMGM+MLPP ISLPFK+I F
Sbjct: 177 THVLIASFILHELKVAFKMGILIFLPFIIIDIIVAAVLMAMGMIMLPPVIISLPFKLILF 236
Query: 229 VLIDGWSLLVENLVKSFI 246
V++DGW+L+ L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254
>gi|256024631|ref|ZP_05438496.1| surface presentation of antigens protein SpaP [Escherichia sp.
4_1_40B]
gi|300950614|ref|ZP_07164516.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 116-1]
gi|300958195|ref|ZP_07170349.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 175-1]
gi|301026123|ref|ZP_07189597.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 196-1]
gi|301643799|ref|ZP_07243836.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 146-1]
gi|307139550|ref|ZP_07498906.1| surface presentation of antigens protein SpaP [Escherichia coli
H736]
gi|62085079|gb|AAX62943.1| type III secretion apparatus protein [Escherichia coli]
gi|299879818|gb|EFI88029.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 196-1]
gi|300315147|gb|EFJ64931.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 175-1]
gi|300450094|gb|EFK13714.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 116-1]
gi|301077832|gb|EFK92638.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 146-1]
gi|323941617|gb|EGB37797.1| YscR/HrcR family protein type III secretion lipoprotein
[Escherichia coli E482]
Length = 221
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 58/213 (27%), Positives = 118/213 (55%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH- 153
+VM P NN + ++ + ++ + + ++ F +
Sbjct: 62 FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121
Query: 154 -SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|170738279|ref|YP_001779539.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3]
gi|169820467|gb|ACA95049.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3]
Length = 216
Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats.
Identities = 59/214 (27%), Positives = 118/214 (55%), Gaps = 2/214 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + + + P + ++VT + + ++V +LR +G+ VPPN+V+ +A+
Sbjct: 2 TQINELTALLIAVIAIGLIPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAIL 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T YVM+P + + + N A PF F++ ++RE++ FM
Sbjct: 62 VTLYVMAPIGMSAADTMRHEQLANSPAEIMVQAFGASQAPFRTFLKAHSRERERLFFMRS 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
AH + + +L P+F ++EL +F+IGFL+ + F+I+D ++A +++AMG+
Sbjct: 122 AHVIWPESLANALHEDDLIVLAPAFTLTELADAFKIGFLLYIAFIIVDFVIANVLLAMGL 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ PT++++PFK++ FV +DGWS L+ L+ ++
Sbjct: 182 NQIQPTNVAIPFKLLLFVAMDGWSALIHGLILTY 215
>gi|330812430|ref|YP_004356892.1| type III secretion protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|312597801|gb|ADQ89916.1| RscR [Pseudomonas fluorescens]
gi|327380538|gb|AEA71888.1| putative type III secretion protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 217
Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats.
Identities = 65/207 (31%), Positives = 116/207 (56%), Gaps = 2/207 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+S+ P+LLI+ + F + IV +I R +G+ VPPN+ + ++AL T ++M+P
Sbjct: 11 LALFIGGISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAP 70
Query: 102 TLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
E + ++ N + +P FM NT L+ ++
Sbjct: 71 VGHNIAEQVKERPLDFSNTEALQGSALNAIKPLQAFMSRNTNPDILAHLLENTQRMWPKE 130
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + +LIP+FM+SEL F++GFLI +PF++ID+IV+ +++A+GM M+ P +I
Sbjct: 131 RAEQASRDDLMLLIPAFMLSELEAGFQMGFLIYIPFIVIDLIVSNLLLALGMQMVAPMTI 190
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
SLP K++ FVL+ GW+ L+++L S++
Sbjct: 191 SLPLKLLIFVLVQGWTQLLDSLFYSYL 217
>gi|71735866|ref|YP_274731.1| type III secretion system protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71556419|gb|AAZ35630.1| type III secretion component, putative [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 218
Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats.
Identities = 59/215 (27%), Positives = 110/215 (51%), Gaps = 2/215 (0%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL
Sbjct: 2 NGYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIAL 61
Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQ-ITETTAIQRVAEP-FWVFMRNNTREKDLSLFMD 150
++ YV +P + ++ Q + + + P + E + F+
Sbjct: 62 ILSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALCPTLQAHLSKFANESERGFFVQ 121
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
+ + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMG
Sbjct: 122 ATETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMG 181
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M M+ PT IS+P K+ FV + GWS L+ L+ S+
Sbjct: 182 MSMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216
>gi|85058547|ref|YP_454249.1| surface presentation of antigens protein SpaP [Sodalis glossinidius
str. 'morsitans']
gi|45504755|gb|AAS66846.1| YsaR [Sodalis glossinidius]
gi|84779067|dbj|BAE73844.1| type III secretion apparatus SpaP [Sodalis glossinidius str.
'morsitans']
Length = 226
Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats.
Identities = 58/218 (26%), Positives = 115/218 (52%), Gaps = 9/218 (4%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
T + + + ++ P ++ TC+ +F IV ++R +G+ +P L + +AL +T
Sbjct: 3 TNDMTLIVLLSFTTLLPFVIAGGTCYIKFSIVLVMVRNALGIQQIPSTLTLNGIALILTA 62
Query: 97 YVMSPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P Q NN + + + + ++ + +K + F + H
Sbjct: 63 FVMMPVCQNISHYIETHQTNFNNIDSTMQFVDQGLGSYRDYLVRYSDKKLIRFFCETQHR 122
Query: 155 SHRNTDITKNDHIE-------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
T + E +L+P++ +SE++ +F+I F + +PF++IDM+V++I++
Sbjct: 123 QSGGEQETDLECTEENMSSLSLMMLMPAYALSEVQSAFKIAFFLYVPFVVIDMVVSSILL 182
Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+GMMM+ P +IS+P K+I FV +DGW+LL + L+ +
Sbjct: 183 ALGMMMMSPVTISIPIKLILFVAMDGWTLLTKGLILQY 220
>gi|167841181|ref|ZP_02467865.1| type III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 216
Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats.
Identities = 69/214 (32%), Positives = 121/214 (56%), Gaps = 2/214 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S+ V+ + LSI P+L+++ + F + +VF++LR +G +PPN+ + LAL
Sbjct: 2 SVLDQPVQLIVVLFALSILPLLMVLGSSFLKLAVVFALLRNALGTQQIPPNIALYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T ++M+P + + ++++ + P+ F+ NT + F D+
Sbjct: 62 LTLFIMAPVGLAIQDNLAEHPVQLDDKQFTQQVETTILAPYRDFLARNTARAQVRFFADI 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
H + + +LIP+F IS+L +F+IG L+ LPF+ ID+IV+ +++AMGM
Sbjct: 122 GHRTWPEPYRNRIPDDSLIVLIPAFAISQLIEAFKIGLLLFLPFVAIDLIVSNVLLAMGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MM+ P +I+LP K++ FVLI+GW L+ LV SF
Sbjct: 182 MMVSPMTIALPLKLLVFVLINGWEKLLGQLVLSF 215
>gi|320103855|ref|YP_004179446.1| type III secretion system inner membrane P protein [Isosphaera
pallida ATCC 43644]
gi|319751137|gb|ADV62897.1| type III secretion system inner membrane P protein [Isosphaera
pallida ATCC 43644]
Length = 247
Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats.
Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 5/245 (2%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
+ + FA++S + G+ I S+AP ++M+T + R
Sbjct: 1 MTMVVATAAAVWFAQTSAGASEGWGPLPPDLARSAASVGVVAIASLAPAAVLMLTAYVRI 60
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
IV ++LR +G +P N V++ L++ +T VM P D E I+P ++ A
Sbjct: 61 SIVLALLRQALGSPQIPGNQVVMMLSILLTILVMKPVADVVAERAIRPFAAGELDYAQAF 120
Query: 126 QRVAEPFWVFMRNN----TREKDLSLFMDMAHSSH-RNTDITKNDHIEYRILIPSFMISE 180
AEP FM + E+ L D+A R D + R++ +F+ISE
Sbjct: 121 AAGAEPVKRFMVKQIVACSNERYLITLHDLAEPPETRTHQPEYLDELPLRVVAAAFLISE 180
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+ + +GF I LPFL+ID++ A ++ AMG+ +LPP +++P K++ FVL +GW L+ +
Sbjct: 181 INVALWMGFAIYLPFLVIDLVTAAVLAAMGLYLLPPAQVAIPLKLMVFVLAEGWWLVAQT 240
Query: 241 LVKSF 245
L++SF
Sbjct: 241 LLRSF 245
>gi|213162230|ref|ZP_03347940.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 190
Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats.
Identities = 70/189 (37%), Positives = 110/189 (58%), Gaps = 1/189 (0%)
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
M T F + +VFSILR +G+ VPPN+ + AL ++ ++M PTL E +
Sbjct: 1 MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG 60
Query: 118 QITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
T+ + P+ F++ N+ EK+ + F ++ + K ILIP+F
Sbjct: 61 APFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAF 120
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
+S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P +ISLPFK++ F+L GW L
Sbjct: 121 TVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDL 180
Query: 237 LVENLVKSF 245
+ LV+SF
Sbjct: 181 TLAQLVQSF 189
>gi|307947532|ref|ZP_07662865.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium
sp. TrichSKD4]
gi|307769350|gb|EFO28578.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium
sp. TrichSKD4]
Length = 217
Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats.
Identities = 69/206 (33%), Positives = 121/206 (58%), Gaps = 2/206 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+ ++ PI+ + VT F + +V I+R G+ ++PPN+V+ LA+ ++ Y+ P
Sbjct: 11 VIALVFFMAFLPIIAVTVTAFAKIAVVLMIVRNATGLQNLPPNVVMYGLAIILSAYIAFP 70
Query: 102 TLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ S E Q P + A Q + P F++ + EK + F+ +
Sbjct: 71 VVADSFERVQQTVPELETAQDWIKAGQEGSAPLKEFLKKHADEKQTAFFLASTRKIWGDK 130
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ IL+PSF++SEL ++FEIGFL+ LPF+ ID+IV T+++A+GMMM+PP++I
Sbjct: 131 YAQDATPEDLAILVPSFLLSELTKAFEIGFLLFLPFIAIDIIVTTVLIALGMMMVPPSTI 190
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
S+PFK++ FV ++GWS +V+ L+ ++
Sbjct: 191 SIPFKLMLFVFVEGWSKIVQGLLLTY 216
>gi|212711701|ref|ZP_03319829.1| hypothetical protein PROVALCAL_02776 [Providencia alcalifaciens DSM
30120]
gi|212685803|gb|EEB45331.1| hypothetical protein PROVALCAL_02776 [Providencia alcalifaciens DSM
30120]
Length = 221
Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats.
Identities = 56/208 (26%), Positives = 111/208 (53%), Gaps = 2/208 (0%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ I + ++ P ++ TC+ + IV ++R MG+ VP + + +AL ++ +VM
Sbjct: 8 IPLLAIIALSTLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIALLLSIFVM 67
Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P L + ++ N + + + ++ + + ++ F +
Sbjct: 68 MPVLQDVNQYMRHESVDFSNVESVDNFVDNGLGRYKSYLMKYSDPQLVTFFESVQQGKTE 127
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+GMMM+ P
Sbjct: 128 IEVQEEQAEPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMSPV 187
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
+IS+P K+I FV IDGWSL+ + LV +
Sbjct: 188 TISVPVKLILFVAIDGWSLISKGLVMQY 215
>gi|85059283|ref|YP_454985.1| type III secretion system protein [Sodalis glossinidius str.
'morsitans']
gi|84779803|dbj|BAE74580.1| putative type III secretion apparatus [Sodalis glossinidius str.
'morsitans']
Length = 215
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 66/189 (34%), Positives = 106/189 (56%), Gaps = 1/189 (0%)
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
M T F + +V SILR +G+ VPPN+ + LAL ++ ++M+PT
Sbjct: 26 MGTSFLKLAVVLSILRNALGIQQVPPNMALYGLALILSLFIMAPTALAVKAQWHPVAAPG 85
Query: 118 QITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
+ + P+ F+R N EK++ F + + + IL+P+F
Sbjct: 86 DTPWASGWDGKALMPYRQFLRRNADEKEIRYFHQLVTKTWPEEARRRVRPDSLLILLPAF 145
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
+S+L ++F IG LI LPFL ID++V+ +++AMGMMM+ P +ISLPFK++ F+L GW L
Sbjct: 146 TVSQLSQAFRIGLLIYLPFLAIDLLVSNVLLAMGMMMVSPMTISLPFKLLIFMLAGGWDL 205
Query: 237 LVENLVKSF 245
++ LV+SF
Sbjct: 206 ILSQLVQSF 214
>gi|85060062|ref|YP_455764.1| surface presentation of antigens protein SpaP [Sodalis glossinidius
str. 'morsitans']
gi|45504775|gb|AAS66865.1| SpaP [Sodalis glossinidius]
gi|84780582|dbj|BAE75359.1| type III secretion apparatus SpaP [Sodalis glossinidius str.
'morsitans']
Length = 233
Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 54/208 (25%), Positives = 114/208 (54%), Gaps = 3/208 (1%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
GI + ++ P ++ TC+ +F IVF ++R +G+ VP NL + +AL + ++M P
Sbjct: 13 LIGILALATLLPFIIASGTCYIKFSIVFVMVRNALGLQQVPSNLTLNGIALMLAMFIMGP 72
Query: 102 TLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + + + + ++ E + +++ + F
Sbjct: 73 IAGDAYNAYQEQPVALGSAASVLEFLENSMESYRHYLQKYADPRLTEFFDRAHGGGGAAH 132
Query: 160 DITKNDHIE-YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
D + H L+P++ +SE++ SF IGF + LPF+++D++++++++A+GMMM+ P +
Sbjct: 133 DAPASGHAPSMLALLPAYALSEIKDSFRIGFYLYLPFVVVDLLISSVLLALGMMMMSPIT 192
Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+S+P K++ FV++DGW+LL + LV ++
Sbjct: 193 LSVPIKLVLFVMLDGWTLLSQGLVLQYL 220
>gi|254255042|ref|ZP_04948359.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158]
gi|124899687|gb|EAY71530.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158]
Length = 250
Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 4/236 (1%)
Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
+ + LV A +L D + I + + + + T+L + P LL+ +T F R++IV
Sbjct: 15 VLCASAALVCAGPALADTLTISSGGDGLSIKTQILVLMTLLGLLPALLMTMTSFLRYVIV 74
Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
S+L+ +G+ P VI +AL +T M P + E P +I A++
Sbjct: 75 LSLLKQALGLQQGLPARVITGVALVLTLLTMRPVGEAIWEKAYVPYEQEKIGLRQALKAA 134
Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
P FM T + L+ ++ + + + + + +F++SEL+ +F+IG
Sbjct: 135 DAPLSQFMLAQTSKATLAQIAKLSGTEAIKEPTQQ----PFLVKLSAFVLSELKTAFQIG 190
Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
++ +PFL+ID+IVA+++MAMGMMML P ISLP K++ FVL+DGWSL V L+ S
Sbjct: 191 AMLFIPFLVIDIIVASVLMAMGMMMLSPLVISLPLKLLLFVLVDGWSLTVSTLLTS 246
>gi|167840284|ref|ZP_02466968.1| type III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 216
Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 59/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P
Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69
Query: 102 TLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + ++ Q T+ A EPF F+ ++RE++ F+ A
Sbjct: 70 IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPKA 129
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + +L P+F ++++ +F IGFL+ + F+I+D+++A ++M+MGM + PT++
Sbjct: 130 AAAQLRDDDLIVLAPAFTLAQMTDAFRIGFLLYIAFIIVDLVIANVLMSMGMNQVQPTNV 189
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
++PFK++ FV++DGWS LV LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215
>gi|261884803|ref|ZP_06008842.1| flagellar biosynthesis protein FliP [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 190
Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 80/167 (47%), Positives = 108/167 (64%), Gaps = 4/167 (2%)
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
++T F R IIVFS LR MG +PP V+ISLAL +TF++M P +S GI+P +
Sbjct: 28 VMTSFLRLIIVFSFLRQAMGTQQMPPTNVLISLALILTFFIMEPVAKQSYNEGIKPYLEE 87
Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
+I A A+PF FM NTREKDL+LF + + NT D I + I P+F+
Sbjct: 88 KIGYQDAFALGAKPFKEFMVRNTREKDLALFYRIRALPNPNT----VDDIPFTIAAPAFI 143
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
ISEL+ +FEIGF++ LP L+IDM+V +++M+MGMM LPP ISL FK
Sbjct: 144 ISELKTAFEIGFMLYLPVLVIDMVVNSVLMSMGMMTLPPEMISLTFK 190
>gi|238757865|ref|ZP_04619047.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
aldovae ATCC 35236]
gi|238703850|gb|EEP96385.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
aldovae ATCC 35236]
Length = 215
Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 71/214 (33%), Positives = 122/214 (57%), Gaps = 1/214 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S+ + + +LS+ P+ ++M T F + +VFSILR +G+ VPPN+ + LAL
Sbjct: 2 SLPDSPWQLIALLFVLSLLPLAVVMGTSFLKLAVVFSILRNALGIQQVPPNMALYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMA 152
++ ++M+PT+ + + P+ F++ N+ EK+ F ++
Sbjct: 62 LSMFIMAPTVLAVKAQWHPVADASTPVWMSGWDGHALGPYRQFLQKNSDEKEARYFRNLI 121
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + IL+P+F +S+L ++F IG LI LPFL ID++V+ I++AMGMM
Sbjct: 122 AKTWPEDARRRVKPDSLLILLPAFTVSQLTQAFRIGLLIYLPFLAIDLLVSNILLAMGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+ P +ISLPFK++ F+L GW L++ LV+SF+
Sbjct: 182 MVSPMTISLPFKLLIFLLAGGWDLILSQLVQSFV 215
>gi|94986979|ref|YP_594912.1| type III secretion system protein [Lawsonia intracellularis
PHE/MN1-00]
gi|94731228|emb|CAJ54591.1| translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
Length = 216
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 113/210 (53%), Gaps = 3/210 (1%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ L +AP +++MVT + + ++V S++R +G+ VPP +V+ LA+ ++ ++
Sbjct: 6 PLIIILGLGALGLAPFVIMMVTSYVKIVVVTSLIRNALGVQQVPPAIVMNGLAIILSIFI 65
Query: 99 MSPTL---DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
M+P + P + A+ P F+ N E + M A
Sbjct: 66 MAPVYMKMEDLYLKTALPSSPAALEVIKALYDATPPLREFLIRNADESTIRGLMVTAKRI 125
Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
I+IP+F I+EL +SF+IGFL+ LPF+ ID++V+ I++AMGMMM+
Sbjct: 126 WPKDQHETISRNNLLIIIPAFTITELTKSFQIGFLLYLPFVAIDLVVSNILLAMGMMMVS 185
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
P +ISLPFK++ FV +DGW + + L+ S+
Sbjct: 186 PMTISLPFKLLLFVTLDGWLKISQGLMLSY 215
>gi|300906599|ref|ZP_07124290.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 84-1]
gi|301303009|ref|ZP_07209136.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 124-1]
gi|71388159|gb|AAZ31293.1| EpaP [Escherichia coli]
gi|300401638|gb|EFJ85176.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 84-1]
gi|300841673|gb|EFK69433.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 124-1]
gi|315256734|gb|EFU36702.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli MS 85-1]
Length = 221
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 112/213 (52%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I T+ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILTLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P NN + ++ + ++ + + +S F +
Sbjct: 62 FVMMPVGTEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121
Query: 155 SHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + D I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVIISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|294141001|ref|YP_003556979.1| type III secretion system EscR protein [Shewanella violacea DSS12]
gi|293327470|dbj|BAJ02201.1| type III secretion system EscR protein [Shewanella violacea DSS12]
Length = 216
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 71/214 (33%), Positives = 120/214 (56%), Gaps = 2/214 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S+ V+ + LSI P+ +M T F + IV S+LR +G+ +PPN+ I L+L
Sbjct: 2 SVLDNPVQLIILLFCLSILPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLSLI 61
Query: 94 MTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQR-VAEPFWVFMRNNTREKDLSLFMDM 151
+T ++M+P + + P++ + + P+ F+ NT + L F ++
Sbjct: 62 LTLFIMAPIGMEINDNLKVHPIVFDSANIIEQVNTLAIIPYRDFLEKNTSKTQLDFFANI 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
H + + +++P+F +S+L +F+IG LI LPF+ ID+IV+ I++AMGM
Sbjct: 122 GHKTWPDKYQDVLSKDSLFVMLPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MM+ P +ISLPFK++ F+L+ GW LV L+ SF
Sbjct: 182 MMVSPMTISLPFKLLIFILMGGWEKLVSQLMVSF 215
>gi|315281327|ref|ZP_07869975.1| flagellar biosynthetic protein FliP [Listeria marthii FSL S4-120]
gi|313615025|gb|EFR88521.1| flagellar biosynthetic protein FliP [Listeria marthii FSL S4-120]
Length = 219
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 60/214 (28%), Positives = 116/214 (54%), Gaps = 4/214 (1%)
Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ L
Sbjct: 7 NGTDGVNSSVALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGL 66
Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
ALF++ ++M P + + +P + + + ++ NT + D+++ +
Sbjct: 67 ALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMMLK 126
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
+TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +G
Sbjct: 127 AEG----EDPVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLG 182
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
MMM+PP +ISLPFK++ F+ I G+ L+ + ++
Sbjct: 183 MMMVPPMTISLPFKILVFIFIGGYGLITNMIFQT 216
>gi|310823554|ref|YP_003955912.1| type III secretion apparatus protein yscr/hrcr [Stigmatella
aurantiaca DW4/3-1]
gi|309396626|gb|ADO74085.1| Type III secretion apparatus protein YscR/HrcR [Stigmatella
aurantiaca DW4/3-1]
Length = 206
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 67/205 (32%), Positives = 127/205 (61%), Gaps = 2/205 (0%)
Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
+ +LS+ P ++M+T F + +V S+ R+ MG PP +V+ LA ++ ++MSP
Sbjct: 1 MAVLAVLSLLPFAVVMLTSFSKIAVVLSLARSAMGTQQAPPTVVLTGLAAVLSAHIMSPV 60
Query: 103 LDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
+ R E+G + + + A++R AEP F+ + ++ S F+++A +
Sbjct: 61 MARMYEVGREAARDAESGAQILAAVERTAEPLRAFLVKHGSAEERSRFVELARELRPPEE 120
Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
T+ + +++P+F+I+EL+ +F++GFL+ LPFL++DM++A I++A+GM L P+ +S
Sbjct: 121 ATQVQEGDLFVVVPAFVITELKEAFQMGFLLFLPFLVLDMVIANILLALGMQSLSPSQVS 180
Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
LPFK++ FV +DGW LL + L++ +
Sbjct: 181 LPFKILLFVTVDGWPLLAQGLIQGY 205
>gi|292487016|ref|YP_003529886.1| Harpin secretion protein HrcR [Erwinia amylovora CFBP1430]
gi|292900599|ref|YP_003539968.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|114152817|sp|Q46646|HRCR_ERWAM RecName: Full=Harpin secretion protein hrcR
gi|89474870|gb|AAB06005.2| HrcR [Erwinia amylovora]
gi|291200447|emb|CBJ47576.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291552433|emb|CBA19478.1| Harpin secretion protein HrcR [Erwinia amylovora CFBP1430]
gi|312171085|emb|CBX79344.1| Harpin secretion protein HrcR [Erwinia amylovora ATCC BAA-2158]
Length = 217
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 66/205 (32%), Positives = 117/205 (57%), Gaps = 2/205 (0%)
Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
LS+ P+L+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+P
Sbjct: 13 LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72
Query: 104 DRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
++ + Q + + T++ P FM +NT L + +
Sbjct: 73 NQMQQQFSQVPADLSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS 132
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
+ ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 133 DSVNKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192
Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
P K++ FVLI+GW+ L++ L S++
Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217
>gi|227357591|ref|ZP_03841944.1| flagellar biosynthesis protein FliP [Proteus mirabilis ATCC 29906]
gi|227162301|gb|EEI47305.1| flagellar biosynthesis protein FliP [Proteus mirabilis ATCC 29906]
Length = 219
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 56/211 (26%), Positives = 113/211 (53%), Gaps = 2/211 (0%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
+ I + ++AP ++ TC+ +F IV + R +G+ VP N+V+ ++AL M +
Sbjct: 3 SSTQLILILALATLAPFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAIALMMALF 62
Query: 98 VMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
VM+P I+ ++ + + ++ + + L+ F +
Sbjct: 63 VMTPITKNICYYVIENKVDMSSPDAIESFSNEALGDYKKYLYHYSDPDLLAFFEQAQENR 122
Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
+ +N L+P++ +SE++ +F IGF + LPF++ID++V+ I++A+GMMM+
Sbjct: 123 PNSDGDKENIENSLLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMS 182
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
P ++S+P K+I F+ +DGW LL + L+ ++
Sbjct: 183 PITLSVPLKLILFIAMDGWGLLSKGLINQYL 213
>gi|302185358|ref|ZP_07262031.1| type III secretion system protein [Pseudomonas syringae pv.
syringae 642]
Length = 217
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 67/212 (31%), Positives = 115/212 (54%), Gaps = 2/212 (0%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
T + LS+ P LL++ T F + V I R +G+ VPPN+ + +AL T
Sbjct: 6 TNPIMLALFLGALSLLPFLLVVCTSFLKIASVLLITRNAIGVQQVPPNMALYGIALAATL 65
Query: 97 YVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM+P + + + T + + + P FM +N L+ + A
Sbjct: 66 FVMAPVFSEIATIAQDNPLQLRDTRDLTRSAKALLAPLQAFMNHNVDPDVLTHLHENALR 125
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
+ +LIP+F++SEL+ +FEIGFLI +PF++ID+IV+ +++A+GM M+
Sbjct: 126 MWPKDMAAAASRGDLLLLIPAFVLSELQAAFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
P +ISLP K++ FVL+ GW+ L+++L S++
Sbjct: 186 SPMTISLPLKILLFVLVSGWTRLLDSLFYSYM 217
>gi|218696459|ref|YP_002404126.1| surface presentation of antigens protein SpaP [Escherichia coli
55989]
gi|218353191|emb|CAU99085.1| putative type III secretion system protein EpaP [Escherichia coli
55989]
Length = 221
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 112/213 (52%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I T+ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNTISLIAILTLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P NN + ++ + ++ + + +S F +
Sbjct: 62 FVMMPVGTEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121
Query: 155 SHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + D I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVIISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|167467561|ref|ZP_02332265.1| type III secretion system protein [Yersinia pestis FV-1]
Length = 333
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 3/206 (1%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + + +LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL
Sbjct: 22 ELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALV 81
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T ++M+P ++N I Q P+ F++ NT + ++ F D+
Sbjct: 82 LTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI 141
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGM
Sbjct: 142 VQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM 201
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLL 237
MM+ P ++SLPFK++ FVL GW ++
Sbjct: 202 MMVSPMTLSLPFKLLVFVLS-GWLVI 226
>gi|167584013|ref|ZP_02376401.1| type III secretion system protein [Burkholderia ubonensis Bu]
Length = 216
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P
Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69
Query: 102 TLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + ++ Q T+ A EPF F+ ++RE++ F+ A
Sbjct: 70 IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKA 129
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++
Sbjct: 130 AAAQLRDDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
++PFK++ FV++DGWS LV LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215
>gi|167567196|ref|ZP_02360112.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis
EO147]
gi|167574620|ref|ZP_02367494.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis
C6786]
Length = 249
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 77/212 (36%), Positives = 118/212 (55%), Gaps = 4/212 (1%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
S + + T+L + P+L I+ T F RF+IV ++LR +G+ P V+ +AL
Sbjct: 38 PSDYSVKTQILLFMTLLGLLPMLAIVTTSFLRFVIVLALLRQALGLQQGLPTRVVAGVAL 97
Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
+T VM P I+P ++IT A+ R P FM T + L +A
Sbjct: 98 LLTLLVMRPVGLDVWRNAIEPYDLDKITFREAVDRAQLPLSRFMLAQTNKASLEQIARLA 157
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
D+ + + + + +FM+SEL+ +F+IG ++ LPFLIID++VA+ +MAMGMM
Sbjct: 158 G----EKDLARPEDHAFVVKAAAFMLSELKTAFQIGSMLFLPFLIIDLVVASTLMAMGMM 213
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
ML P ISLP K++ FVL+DGW+L V+ L S
Sbjct: 214 MLSPLVISLPLKLLLFVLVDGWTLTVDTLATS 245
>gi|51103119|gb|AAT96262.1| HrcR [Pseudomonas viridiflava]
gi|51103161|gb|AAT96303.1| HrcR [Pseudomonas viridiflava]
gi|51103202|gb|AAT96343.1| HrcR [Pseudomonas viridiflava]
Length = 193
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 60/193 (31%), Positives = 108/193 (55%), Gaps = 2/193 (1%)
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ--P 113
+I+ T F + +V I R +G+ PPN+ + +AL T ++M+P + +
Sbjct: 1 MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE 60
Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
++ +A + V EP FM N + ++ K + +++
Sbjct: 61 HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV 120
Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
P+F++SEL+ F+IGFLI +PF++ID+IV+ I++A+GM M+ P +ISLP K++ FVL+DG
Sbjct: 121 PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG 180
Query: 234 WSLLVENLVKSFI 246
W+ L++ L S++
Sbjct: 181 WTRLLDGLFYSYM 193
>gi|123443727|ref|YP_001007698.1| surface presentation of antigens protein SpaP [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|15088594|gb|AAK84105.1|AF369954_3 YsaR [Yersinia enterocolitica]
gi|122090688|emb|CAL13564.1| type III secretion apparatus protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 224
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 59/211 (27%), Positives = 113/211 (53%), Gaps = 4/211 (1%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ I S+ P ++ TC+ + IV ++R MG+ VP L + +AL ++ +VM
Sbjct: 9 IPLLAIVAFSSLLPFVIAAGTCYLKISIVLIMVRNAMGVQQVPSGLALNGIALLLSLFVM 68
Query: 100 SPTLDRSIEMGI--QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + + +N + I + +++ + + L+ F +
Sbjct: 69 MPVIQDVNHYMRTEKVDFSNVDSVDKFIDGGLGSYTAYLKKYSDPELLNFFESLQQGRSE 128
Query: 158 NTDITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
+ + D L+P++ +SE++ +FEIGF I LPF++ID+I+++I++A+GMMM+
Sbjct: 129 EESMAEADTREPALFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLIISSILLALGMMMMS 188
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
P +IS+P K+I FV IDGW+L+ + L+ ++
Sbjct: 189 PVTISVPVKLILFVAIDGWALISKGLIMQYM 219
>gi|254575132|gb|ACT68033.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii
DC283]
Length = 223
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 54/215 (25%), Positives = 113/215 (52%), Gaps = 6/215 (2%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + + + ++ P ++ TCF +F IV ++R +G+ VP L + +AL ++
Sbjct: 3 SNDISLIALLSFFTLLPFIIAGGTCFIKFSIVLIMVRNALGIQQVPSTLTLNGVALILSA 62
Query: 97 YVMSPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF----MD 150
+VM P R NN + T +++ + ++ + + F
Sbjct: 63 FVMMPVCQRISEYIESNHIDFNNSASVTQLMEQGLGSYRDYLVRYSDHDLIRFFNKVQQR 122
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
+ + + + L+P++ +SE++ +F+I F + +PF++IDM+V++I++A+G
Sbjct: 123 RSGEPVPEVEDHELSTLSLITLMPAYALSEIQSAFKIAFYLYVPFVVIDMVVSSILLALG 182
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MMM+ P +IS+P K+I FV ++GW+LL + L+ +
Sbjct: 183 MMMMSPVTISIPIKLILFVSMNGWALLTKGLIAQY 217
>gi|170737012|ref|YP_001778272.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia
MC0-3]
gi|169819200|gb|ACA93782.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia
MC0-3]
Length = 248
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 67/243 (27%), Positives = 124/243 (51%), Gaps = 4/243 (1%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ ++ + + T + + T+L + P LL+ +T
Sbjct: 6 LLRYLGLALAAFAMPALVQAETLTLASDGVGGQGFTVKTQILVLMTLLGLLPALLMTMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R++IV S+++ +G+ P ++ +AL +T M P + + P +I+
Sbjct: 66 FLRYVIVLSLVKQALGLQQGLPGRIVTGVALVLTMLTMRPVGEEIWQKAFVPYDQGKISM 125
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
TA+ +P +M T + L+ ++ + + + + + + +F++SEL
Sbjct: 126 QTALATSEQPLGRYMLAQTNKATLAQMAKLSGTEK----VMDPEKQPFLVKLSAFVLSEL 181
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
+ +F++G ++ +PFLI+D+IVA+++MAMGMMML P ISLP K++ FVL+DGWSL V L
Sbjct: 182 KTAFQMGAMLFIPFLIVDIIVASVLMAMGMMMLSPLVISLPLKLLLFVLVDGWSLTVNTL 241
Query: 242 VKS 244
V S
Sbjct: 242 VTS 244
>gi|256019339|ref|ZP_05433204.1| surface presentation of antigens protein SpaP [Shigella sp. D9]
gi|332280453|ref|ZP_08392866.1| type III secretion protein EpaP [Shigella sp. D9]
gi|332102805|gb|EGJ06151.1| type III secretion protein EpaP [Shigella sp. D9]
Length = 220
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 113/213 (53%), Gaps = 5/213 (2%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P NN + ++ + ++ + + +S F +
Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121
Query: 155 SHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + D I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 M-SPVTISTPIKLILFVAMDGWTMLSKGLILQY 213
>gi|126444918|ref|YP_001063272.1| type III secretion system protein [Burkholderia pseudomallei 668]
gi|167743328|ref|ZP_02416102.1| type III secretion system protein [Burkholderia pseudomallei 14]
gi|167898938|ref|ZP_02486339.1| type III secretion system protein [Burkholderia pseudomallei 7894]
gi|167923471|ref|ZP_02510562.1| type III secretion system protein [Burkholderia pseudomallei
BCC215]
gi|217422186|ref|ZP_03453689.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 576]
gi|237510472|ref|ZP_04523187.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei MSHR346]
gi|126224409|gb|ABN87914.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 668]
gi|217394417|gb|EEC34436.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 576]
gi|235002677|gb|EEP52101.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei MSHR346]
Length = 216
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P
Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69
Query: 102 TLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + ++ Q T+ A EPF F+ ++RE++ F+ A
Sbjct: 70 IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA 129
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++
Sbjct: 130 AAAQLRDDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
++PFK++ FV++DGWS LV LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215
>gi|260778660|ref|ZP_05887552.1| yop virulence translocation protein R [Vibrio coralliilyticus ATCC
BAA-450]
gi|260604824|gb|EEX31119.1| yop virulence translocation protein R [Vibrio coralliilyticus ATCC
BAA-450]
Length = 216
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 64/209 (30%), Positives = 117/209 (55%), Gaps = 2/209 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
++ + +S+ P+ +M T F + IV S+LR +G+ +PPN+ I LAL +T +
Sbjct: 7 PIQLIAVLFFMSLLPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLALILTMFT 66
Query: 99 MSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P + + + ++ P+ F+ +NT + + F ++ H
Sbjct: 67 MAPVGLAIRDNLAAHPVDWASPEVFSQISDQIIAPYHQFLSHNTSDTQIQFFSEIGHKIW 126
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
++ +++P+F +S+L +F+IGFL+ LPF+ ID+IV+ I++AMGMMM+ P
Sbjct: 127 PEQYQSELSKDSLLVMVPAFTMSQLIEAFKIGFLLYLPFVAIDLIVSNILLAMGMMMVSP 186
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+I+LPFK++ F+L+ GW L+ L+ SF
Sbjct: 187 MTIALPFKLLIFILMGGWDKLIGQLMGSF 215
>gi|197286517|ref|YP_002152389.1| surface presentation of antigens protein SpaP [Proteus mirabilis
HI4320]
gi|194684004|emb|CAR45294.1| type III secretion system protein [Proteus mirabilis HI4320]
Length = 219
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 56/211 (26%), Positives = 113/211 (53%), Gaps = 2/211 (0%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
+ I + ++AP ++ TC+ +F IV + R +G+ VP N+V+ ++AL M +
Sbjct: 3 SSTQLILILALATLAPFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAIALMMALF 62
Query: 98 VMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
VM+P I+ ++ + + ++ + + L+ F +
Sbjct: 63 VMTPITKNICYYIIENKVDMSSPDAIESFSNEALGDYKKYLYHYSDPDLLAFFEQAQENR 122
Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
+ +N L+P++ +SE++ +F IGF + LPF++ID++V+ I++A+GMMM+
Sbjct: 123 PNSDGDKENIENSLLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMS 182
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
P ++S+P K+I F+ +DGW LL + L+ ++
Sbjct: 183 PITLSVPLKLILFIAMDGWGLLSKGLINQYL 213
>gi|259909718|ref|YP_002650074.1| type III secretion system protein [Erwinia pyrifoliae Ep1/96]
gi|224965340|emb|CAX56872.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-harpin secretion protein [Erwinia pyrifoliae
Ep1/96]
gi|283479804|emb|CAY75720.1| Harpin secretion protein HrcR [Erwinia pyrifoliae DSM 12163]
gi|310766418|gb|ADP11368.1| type III secretion system protein [Erwinia sp. Ejp617]
Length = 217
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 66/205 (32%), Positives = 116/205 (56%), Gaps = 2/205 (0%)
Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
LS+ P+L+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+P
Sbjct: 13 LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72
Query: 104 DRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
++ + Q + + T++ P FM +NT L + +
Sbjct: 73 NQMQQQFSQVPADLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS 132
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 133 DSVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192
Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
P K++ FVLI+GW+ L++ L S++
Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217
>gi|167576640|ref|ZP_02369514.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
TXDOH]
Length = 255
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 79/230 (34%), Positives = 123/230 (53%), Gaps = 5/230 (2%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
A+ + ++ + + T+L + P L I++T F RF IV ++LR
Sbjct: 27 TPALAEPLELPLESLGLRG-DYSVKTQILLFMTLLGLLPALAIVMTSFLRFAIVLALLRQ 85
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G+ P VI ++AL +T VM P I+P ++IT AI R +P
Sbjct: 86 ALGLQQGLPARVITAVALLLTLLVMRPVGLDVWRHAIEPYDRDEITFREAIARAEKPISR 145
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
FM T + L+ ++ D+ K + + + +FM+SEL+ +F+IG ++ LP
Sbjct: 146 FMLAQTSKASLAQISRLSG----ERDVAKPEDHAFVVKAAAFMMSELKTAFQIGAMLFLP 201
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
FLIID++VA+ +MAMGMMML P ISLP K++ FVL+DGW+L V L S
Sbjct: 202 FLIIDLVVASTLMAMGMMMLSPLVISLPLKLLLFVLVDGWTLTVNTLTTS 251
>gi|83718233|ref|YP_438951.1| type III secretion system protein [Burkholderia thailandensis E264]
gi|167577333|ref|ZP_02370207.1| type III secretion system protein [Burkholderia thailandensis
TXDOH]
gi|167615481|ref|ZP_02384116.1| type III secretion system protein [Burkholderia thailandensis Bt4]
gi|257142055|ref|ZP_05590317.1| type III secretion system protein [Burkholderia thailandensis E264]
gi|83652058|gb|ABC36122.1| type III secretion inner membrane protein SctR [Burkholderia
thailandensis E264]
Length = 216
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P
Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69
Query: 102 TLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + ++ Q T+ A EPF F+ ++RE++ F+ A
Sbjct: 70 IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVVWPKA 129
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++
Sbjct: 130 AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFVIVDLVIANVLMSMGMNQVQPTNV 189
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
++PFK++ FV++DGWS LV LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215
>gi|171320712|ref|ZP_02909725.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5]
gi|171094039|gb|EDT39137.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5]
Length = 259
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 81/214 (37%), Positives = 135/214 (63%), Gaps = 4/214 (1%)
Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
D ++ VR + T+LSI P L++ +T F R +IV S++R GM PP V+ISLA
Sbjct: 49 DRDGASEAVRIAVLLTLLSIGPALVVSMTAFIRIVIVLSMIRHAFGMPETPPTPVLISLA 108
Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
LF+T +VM P D +QP M+ +I A++ A P FM R+ +L L ++
Sbjct: 109 LFLTAFVMMPAFDTLHHDALQPFMDGRIAVDRALELGAAPLRDFMLRQVRDDELRLMYEL 168
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ + D + L P+F+++ELR +F+IGF+++LPFL++D++V+T+++++GM
Sbjct: 169 SRKPLPD----SADEVGLLQLTPAFILNELRVAFQIGFVVLLPFLLLDLVVSTVLLSLGM 224
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+M+PP++ISLP K++ FVLIDGW L++ ++ F
Sbjct: 225 LMVPPSTISLPLKILMFVLIDGWGLVMRGVLGGF 258
>gi|309703222|emb|CBJ02557.1| type III secretion system protein [Escherichia coli ETEC H10407]
Length = 221
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 54/213 (25%), Positives = 113/213 (53%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P NN + ++ + ++ + + ++ F +
Sbjct: 62 FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121
Query: 155 SHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + D I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEVIFDDDNISIISLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|167573308|ref|ZP_02366182.1| surface presentation of antigens protein SpaP [Burkholderia
oklahomensis C6786]
Length = 229
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 58/220 (26%), Positives = 116/220 (52%), Gaps = 13/220 (5%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM
Sbjct: 6 IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65
Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + ++ N + I + ++ + + + F S +
Sbjct: 66 MPVAQSAYRYLQHHPLDVMNGTSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQASRLK 125
Query: 158 NTDITKND-----------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
D D L+P++ ++E++ +F+IGF + LPFL++DM+V++++
Sbjct: 126 GDDADAADADVAGDEPDGFDNSLFTLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVL 185
Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+A+GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 186 LALGMMMMSPVTISVPIKLILFVAMDGWTLISKGLIEQYL 225
>gi|317486826|ref|ZP_07945642.1| YscR/HrcR family type III secretion apparatus protein [Bilophila
wadsworthia 3_1_6]
gi|316921989|gb|EFV43259.1| YscR/HrcR family type III secretion apparatus protein [Bilophila
wadsworthia 3_1_6]
Length = 216
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 67/210 (31%), Positives = 126/210 (60%), Gaps = 3/210 (1%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ +L +AP L+MVT + + ++V S++R +G+ VPP +V+ LA+ ++ ++
Sbjct: 6 PLYFIVGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILSLFI 65
Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAI---QRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
M+P + ++++ + ++ + + I +++ P F+ +NT + L FM A
Sbjct: 66 MAPMMMSTMDIAGKLQISAEPSPKEVIGIVDKLSPPLRKFLSDNTEDGVLRAFMSTAKRI 125
Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
+ IL+P+F ISEL ++F++GFL+ LPF+ ID+I++ I++AMGMMM+
Sbjct: 126 WPKEQHDQISKDNMLILVPAFTISELTKAFQVGFLLYLPFIAIDLIISNILLAMGMMMVS 185
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
P +ISLPFK++ FV +DGW + + L+ S+
Sbjct: 186 PMTISLPFKLLLFVTLDGWLKISQGLLLSY 215
>gi|119714990|ref|YP_921955.1| flagellar biosynthesis protein FliP [Nocardioides sp. JS614]
gi|119535651|gb|ABL80268.1| flagellar biosynthetic protein FliP [Nocardioides sp. JS614]
Length = 266
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 82/235 (34%), Positives = 137/235 (58%), Gaps = 15/235 (6%)
Query: 22 SLHDVMNIPADLSI-----------STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
+ + + PA + + V T++S+ P +L+ T F + +V
Sbjct: 34 NGPNGPDGPAGGNGVTVDLGGLTDSPSTSVTVLIGLTLISLLPAILLSCTAFTKIFVVLG 93
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
+ R +G+ PPN V+ LALF++ +VM P L E+G+QP +N T + AIQ E
Sbjct: 94 LTRNALGLQQTPPNQVLAGLALFLSLFVMGPVLSDINEVGLQPYLNGDKTTSVAIQDGIE 153
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P FM +NT + +L L ++A + LIP+F+++EL+++F IGF+
Sbjct: 154 PLRDFMLDNTDDDELMLLTNVAGRDLPEDRA----DVSTATLIPAFVLTELKQAFIIGFI 209
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
I +PFL+ID++V+ +MA+GMMM+PP +SLPFK++ FVL+DGW+L++++LV S+
Sbjct: 210 IFIPFLVIDLVVSGALMALGMMMMPPVMVSLPFKLLLFVLVDGWALVIKSLVASY 264
>gi|188532666|ref|YP_001906463.1| type III secretion system protein [Erwinia tasmaniensis Et1/99]
gi|188027708|emb|CAO95561.1| HrcR protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
Length = 217
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 65/205 (31%), Positives = 116/205 (56%), Gaps = 2/205 (0%)
Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
LS+ P+L+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+P
Sbjct: 13 LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72
Query: 104 DRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
++ + Q + + + ++ P FM +NT L + +
Sbjct: 73 NQMQQQFSQSPADLSSMDSLKNSVTHGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS 132
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 133 DSVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192
Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
P K++ FVLI+GW+ L++ L S++
Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217
>gi|167566298|ref|ZP_02359214.1| type III secretion system protein [Burkholderia oklahomensis EO147]
gi|167573400|ref|ZP_02366274.1| type III secretion system protein [Burkholderia oklahomensis C6786]
Length = 216
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P
Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69
Query: 102 TLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + ++ Q T+ A EPF F+ ++RE++ F+ A
Sbjct: 70 IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKA 129
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++
Sbjct: 130 AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
++PFK++ FV++DGWS LV LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215
>gi|182440971|dbj|BAG24096.1| HrcR [Pseudomonas cichorii]
Length = 193
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 60/193 (31%), Positives = 112/193 (58%), Gaps = 2/193 (1%)
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ--P 113
+I+ T F + +V I R +G+ PPN+ + +AL T ++M+P + + +
Sbjct: 1 MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFNEMGQRVKKLPE 60
Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
++N +A + V EP +FM N + ++ ++ + +++
Sbjct: 61 RLDNFAAMESAGKHVIEPLRLFMTRNIDPDIQTHLLENTQRMWPKEMSSQASRDDLLLVV 120
Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
P+F++SEL+ F+IGFLI +PF++ID+IV+ I++A+GM M+ P +ISLP K++ FVL+DG
Sbjct: 121 PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG 180
Query: 234 WSLLVENLVKSFI 246
W+ L++ L S++
Sbjct: 181 WTRLLDGLFYSYM 193
>gi|326794362|ref|YP_004312182.1| Yop virulence translocation R [Marinomonas mediterranea MMB-1]
gi|326545126|gb|ADZ90346.1| Yop virulence translocation R [Marinomonas mediterranea MMB-1]
Length = 217
Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats.
Identities = 71/205 (34%), Positives = 114/205 (55%), Gaps = 2/205 (0%)
Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
LS+ PI+LI+ + F + +V I R MG+ VPPN+ I +AL T +VM+P
Sbjct: 13 LFLGALSLLPIMLIVCSAFLKISMVLMITRNAMGVQQVPPNMAIYGIALAATMFVMAPVF 72
Query: 104 DRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
+ P ++ T+ ++ P FM N+ + MD
Sbjct: 73 SDIGNKVKETPPDFSSLEGMQTSANKIVGPLQAFMSRNSNPDVTTHMMDNTARLWPKEMA 132
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
+K + I+IPSFM+SEL+ +IGFLI +PF++ID+IV+ +++A+GM M+ P +ISL
Sbjct: 133 SKVTKDDLMIVIPSFMLSELKAGLQIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISL 192
Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
P K++ FVL+DGW L++ L ++I
Sbjct: 193 PLKILLFVLVDGWGRLLDGLFYTYI 217
>gi|83716894|ref|YP_438369.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
E264]
gi|167614815|ref|ZP_02383450.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
Bt4]
gi|257141400|ref|ZP_05589662.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
E264]
gi|83650719|gb|ABC34783.1| flagellar biosynthetic protein fliP [Burkholderia thailandensis
E264]
Length = 255
Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats.
Identities = 78/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + T+L + P L I++T F RF IV ++LR +G+ P VI ++AL
Sbjct: 45 GDYSVKTQILLFMTLLGLLPALAIVMTSFLRFAIVLALLRQALGLQQGLPARVITAVALL 104
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
+T VM P I+P ++IT AI R +P FM T + L ++
Sbjct: 105 LTLLVMRPVGLDVWRHAIEPYDRDEITFREAIARAEKPLSRFMLAQTSKASLEQISRLSG 164
Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
D+ K + + + +FM+SEL+ +F+IG ++ LPFLIID++VA+ +MAMGMMM
Sbjct: 165 ----ERDVAKPEDHAFVVKAAAFMMSELKTAFQIGAMLFLPFLIIDLVVASTLMAMGMMM 220
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
L P ISLP K++ FVL+DGW+L V L S
Sbjct: 221 LSPLVISLPLKLLLFVLVDGWTLTVNTLTTS 251
>gi|134282034|ref|ZP_01768740.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 305]
gi|134246563|gb|EBA46651.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 305]
Length = 226
Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats.
Identities = 56/217 (25%), Positives = 116/217 (53%), Gaps = 10/217 (4%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM
Sbjct: 6 IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65
Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + ++ + + I + ++ + + + F + +
Sbjct: 66 MPVAQSAYRYLQHHPLDVMSGASVNEFIDGGLGDYKRYLARYSDPELVRFFERAQTARLK 125
Query: 158 NTDITKND--------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
D D L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+
Sbjct: 126 GDDADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLAL 185
Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 186 GMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222
>gi|53716433|ref|YP_106203.1| type III secretion system protein [Burkholderia mallei ATCC 23344]
gi|53722640|ref|YP_111625.1| type III secretion system protein [Burkholderia pseudomallei
K96243]
gi|76819625|ref|YP_335835.1| type III secretion system protein [Burkholderia pseudomallei 1710b]
gi|124381437|ref|YP_001025753.1| type III secretion system protein [Burkholderia mallei NCTC 10229]
gi|126447834|ref|YP_001077838.1| type III secretion system protein [Burkholderia mallei NCTC 10247]
gi|126457083|ref|YP_001076228.1| type III secretion system protein [Burkholderia pseudomallei 1106a]
gi|134282115|ref|ZP_01768821.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 305]
gi|167004563|ref|ZP_02270321.1| type III secretion inner membrane protein SctR [Burkholderia mallei
PRL-20]
gi|167724361|ref|ZP_02407597.1| type III secretion system protein [Burkholderia pseudomallei DM98]
gi|167820506|ref|ZP_02452186.1| type III secretion system protein [Burkholderia pseudomallei 91]
gi|167850341|ref|ZP_02475849.1| type III secretion system protein [Burkholderia pseudomallei B7210]
gi|167907266|ref|ZP_02494471.1| type III secretion system protein [Burkholderia pseudomallei NCTC
13177]
gi|167915628|ref|ZP_02502719.1| type III secretion system protein [Burkholderia pseudomallei 112]
gi|238563924|ref|ZP_04610801.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia mallei GB8 horse 4]
gi|242311808|ref|ZP_04810825.1| type III secretion inner membrane protein SctR [Burkholderia
pseudomallei 1106b]
gi|254176224|ref|ZP_04882882.1| type III secretion inner membrane protein SctR [Burkholderia mallei
ATCC 10399]
gi|254185081|ref|ZP_04891670.1| type III secretion inner membrane protein SctR [Burkholderia
pseudomallei 1655]
gi|254186948|ref|ZP_04893464.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei Pasteur 52237]
gi|254194505|ref|ZP_04900937.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei S13]
gi|254201084|ref|ZP_04907449.1| type III secretion inner membrane protein SctR [Burkholderia mallei
FMH]
gi|254205049|ref|ZP_04911402.1| type III secretion inner membrane protein SctR [Burkholderia mallei
JHU]
gi|254262389|ref|ZP_04953254.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1710a]
gi|254301371|ref|ZP_04968815.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 406e]
gi|254359170|ref|ZP_04975442.1| type III secretion inner membrane protein SctR [Burkholderia mallei
2002721280]
gi|52213054|emb|CAH39092.1| putative type III secretion protein [Burkholderia pseudomallei
K96243]
gi|52422403|gb|AAU45973.1| type III secretion inner membrane protein SctR [Burkholderia mallei
ATCC 23344]
gi|76584098|gb|ABA53572.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1710b]
gi|126230851|gb|ABN94264.1| type III secretion inner membrane protein SctR [Burkholderia
pseudomallei 1106a]
gi|126240688|gb|ABO03800.1| type III secretion inner membrane protein SctR [Burkholderia mallei
NCTC 10247]
gi|134246644|gb|EBA46732.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 305]
gi|147748696|gb|EDK55771.1| type III secretion inner membrane protein SctR [Burkholderia mallei
FMH]
gi|147754635|gb|EDK61699.1| type III secretion inner membrane protein SctR [Burkholderia mallei
JHU]
gi|148028357|gb|EDK86317.1| type III secretion inner membrane protein SctR [Burkholderia mallei
2002721280]
gi|157811552|gb|EDO88722.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 406e]
gi|157934632|gb|EDO90302.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei Pasteur 52237]
gi|160697266|gb|EDP87236.1| type III secretion inner membrane protein SctR [Burkholderia mallei
ATCC 10399]
gi|169651256|gb|EDS83949.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei S13]
gi|184215673|gb|EDU12654.1| type III secretion inner membrane protein SctR [Burkholderia
pseudomallei 1655]
gi|238519668|gb|EEP83137.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia mallei GB8 horse 4]
gi|242135047|gb|EES21450.1| type III secretion inner membrane protein SctR [Burkholderia
pseudomallei 1106b]
gi|243060178|gb|EES42364.1| type III secretion inner membrane protein SctR [Burkholderia mallei
PRL-20]
gi|254213391|gb|EET02776.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1710a]
gi|261826319|gb|ABM99126.2| type III secretion inner membrane protein SctR [Burkholderia mallei
NCTC 10229]
Length = 216
Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats.
Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P
Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69
Query: 102 TLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + ++ Q T+ A EPF F+ ++RE++ F+ A
Sbjct: 70 IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA 129
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++
Sbjct: 130 AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
++PFK++ FV++DGWS LV LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215
>gi|167566198|ref|ZP_02359114.1| surface presentation of antigens protein SpaP [Burkholderia
oklahomensis EO147]
Length = 229
Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats.
Identities = 57/220 (25%), Positives = 116/220 (52%), Gaps = 13/220 (5%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM
Sbjct: 6 IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65
Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + ++ N + I + ++ + + + F + +
Sbjct: 66 MPVAQSAYRYLQHHPLDVMNGTSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQAARLK 125
Query: 158 NTDITKND-----------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
D D L+P++ ++E++ +F+IGF + LPFL++DM+V++++
Sbjct: 126 GDDADAADADVAGDEPDGFDNSLFTLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVL 185
Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+A+GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 186 LALGMMMMSPVTISVPIKLILFVAMDGWTLISKGLIEQYL 225
>gi|167828878|ref|ZP_02460349.1| type III secretion system protein [Burkholderia pseudomallei 9]
gi|226198433|ref|ZP_03794001.1| type III secretion inner membrane protein SctR [Burkholderia
pseudomallei Pakistan 9]
gi|225929490|gb|EEH25509.1| type III secretion inner membrane protein SctR [Burkholderia
pseudomallei Pakistan 9]
Length = 216
Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats.
Identities = 59/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P
Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69
Query: 102 TLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + M+ Q T+ A EPF F+ ++RE++ F+ A
Sbjct: 70 IGFAAQQQLQGQAMSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA 129
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++
Sbjct: 130 AAAQLRDDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
++PFK++ FV++DGWS LV LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215
>gi|157162320|ref|YP_001459638.1| surface presentation of antigens protein SpaP [Escherichia coli HS]
gi|157068000|gb|ABV07255.1| type III secretion apparatus protein EpaP [Escherichia coli HS]
Length = 221
Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats.
Identities = 58/213 (27%), Positives = 117/213 (54%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH- 153
+VM P NN + ++ + ++ + + ++ F +
Sbjct: 62 FVMMPVGKEIYYNSQNENLSFNNLASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121
Query: 154 -SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++ +++ +GMM
Sbjct: 122 NSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISIVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|53716462|ref|YP_106126.1| surface presentation of antigens protein SpaP [Burkholderia mallei
ATCC 23344]
gi|53722558|ref|YP_111543.1| surface presentation of antigens protein SpaP [Burkholderia
pseudomallei K96243]
gi|67641437|ref|ZP_00440216.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia mallei GB8 horse 4]
gi|76819720|ref|YP_335736.1| surface presentation of antigens protein SpaP [Burkholderia
pseudomallei 1710b]
gi|124382629|ref|YP_001025864.1| surface presentation of antigens protein SpaP [Burkholderia mallei
NCTC 10229]
gi|126442644|ref|YP_001063161.1| surface presentation of antigens protein SpaP [Burkholderia
pseudomallei 668]
gi|126447432|ref|YP_001077949.1| surface presentation of antigens protein SpaP [Burkholderia mallei
NCTC 10247]
gi|126458099|ref|YP_001076112.1| surface presentation of antigens protein SpaP [Burkholderia
pseudomallei 1106a]
gi|167004216|ref|ZP_02269983.1| type III secretion system protein BsaW [Burkholderia mallei PRL-20]
gi|167724226|ref|ZP_02407462.1| surface presentation of antigens protein SpaP [Burkholderia
pseudomallei DM98]
gi|167743201|ref|ZP_02415975.1| surface presentation of antigens protein SpaP [Burkholderia
pseudomallei 14]
gi|167820375|ref|ZP_02452055.1| surface presentation of antigens protein SpaP [Burkholderia
pseudomallei 91]
gi|167828747|ref|ZP_02460218.1| surface presentation of antigens protein SpaP [Burkholderia
pseudomallei 9]
gi|167850202|ref|ZP_02475710.1| surface presentation of antigens protein SpaP [Burkholderia
pseudomallei B7210]
gi|167898809|ref|ZP_02486210.1| surface presentation of antigens protein SpaP [Burkholderia
pseudomallei 7894]
gi|167907137|ref|ZP_02494342.1| surface presentation of antigens protein SpaP [Burkholderia
pseudomallei NCTC 13177]
gi|167915491|ref|ZP_02502582.1| surface presentation of antigens protein SpaP [Burkholderia
pseudomallei 112]
gi|167923336|ref|ZP_02510427.1| surface presentation of antigens protein SpaP [Burkholderia
pseudomallei BCC215]
gi|217425211|ref|ZP_03456706.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 576]
gi|226196071|ref|ZP_03791657.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei Pakistan 9]
gi|237509960|ref|ZP_04522675.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei MSHR346]
gi|242313875|ref|ZP_04812892.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1106b]
gi|254176249|ref|ZP_04882907.1| type III secretion system protein BsaW [Burkholderia mallei ATCC
10399]
gi|254186856|ref|ZP_04893372.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei Pasteur 52237]
gi|254193764|ref|ZP_04900196.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei S13]
gi|254200992|ref|ZP_04907357.1| type III secretion system protein BsaW [Burkholderia mallei FMH]
gi|254204956|ref|ZP_04911309.1| type III secretion system protein BsaW [Burkholderia mallei JHU]
gi|254265439|ref|ZP_04956304.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1710a]
gi|254301456|ref|ZP_04968900.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 406e]
gi|254359075|ref|ZP_04975347.1| type III secretion system protein BsaW [Burkholderia mallei
2002721280]
gi|52212972|emb|CAH39010.1| surface presentation of antigens protein [Burkholderia pseudomallei
K96243]
gi|52422432|gb|AAU46002.1| type III secretion system protein BsaW [Burkholderia mallei ATCC
23344]
gi|76584193|gb|ABA53667.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1710b]
gi|126222135|gb|ABN85640.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 668]
gi|126231867|gb|ABN95280.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1106a]
gi|126240286|gb|ABO03398.1| type III secretion system protein BsaW [Burkholderia mallei NCTC
10247]
gi|147748604|gb|EDK55679.1| type III secretion system protein BsaW [Burkholderia mallei FMH]
gi|147754542|gb|EDK61606.1| type III secretion system protein BsaW [Burkholderia mallei JHU]
gi|148028262|gb|EDK86222.1| type III secretion system protein BsaW [Burkholderia mallei
2002721280]
gi|157811160|gb|EDO88330.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 406e]
gi|157934540|gb|EDO90210.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei Pasteur 52237]
gi|160697291|gb|EDP87261.1| type III secretion system protein BsaW [Burkholderia mallei ATCC
10399]
gi|169650515|gb|EDS83208.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei S13]
gi|217391816|gb|EEC31843.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 576]
gi|225931964|gb|EEH27965.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei Pakistan 9]
gi|235002165|gb|EEP51589.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei MSHR346]
gi|238522377|gb|EEP85822.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia mallei GB8 horse 4]
gi|242137114|gb|EES23517.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1106b]
gi|243060411|gb|EES42597.1| type III secretion system protein BsaW [Burkholderia mallei PRL-20]
gi|254216441|gb|EET05826.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1710a]
gi|261826900|gb|ABM99812.2| type III secretion system protein BsaW [Burkholderia mallei NCTC
10229]
Length = 226
Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats.
Identities = 56/217 (25%), Positives = 116/217 (53%), Gaps = 10/217 (4%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM
Sbjct: 6 IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65
Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + ++ + + I + ++ + + + F + +
Sbjct: 66 MPVAQSAYRYLQHHPLDVMSGASVNEFIDGGLGDYKRYLTRYSDPELVRFFERAQTARLK 125
Query: 158 NTDITKND--------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
D D L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+
Sbjct: 126 GDDADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLAL 185
Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 186 GMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222
>gi|46562139|ref|YP_009162.1| type III secretion system protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120586838|ref|YP_961183.1| type III secretion system protein [Desulfovibrio vulgaris subsp.
vulgaris DP4]
gi|46447676|gb|AAS94342.1| type III secretion system protein, YscR family [Desulfovibrio
vulgaris str. Hildenborough]
gi|120564252|gb|ABM29995.1| Yop virulence translocation R [Desulfovibrio vulgaris DP4]
gi|311235512|gb|ADP88365.1| Yop virulence translocation R [Desulfovibrio vulgaris RCH1]
Length = 216
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 69/210 (32%), Positives = 120/210 (57%), Gaps = 3/210 (1%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ +L +AP L+MVT + + ++V S++R +G+ VPP +V+ LA+ ++ ++
Sbjct: 6 PLYFIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFI 65
Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAI---QRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
M+P ++++ + I + + P F+ N +K +++FM A
Sbjct: 66 MAPVASGTLDLMQNMKIGPDPAPREIIALLDKASPPLRGFLERNADDKVVTVFMSTAKRI 125
Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
ILIPSF ISEL R+F+IGFL+ LPF+ ID++++ I++AMGMMM+
Sbjct: 126 WPADQHASISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVS 185
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
P +ISLPFK++ FV +DGW + + L+ S+
Sbjct: 186 PMTISLPFKLLLFVTLDGWLKVSQGLLLSY 215
>gi|332526333|ref|ZP_08402460.1| type III secretion system protein YscR [Rubrivivax benzoatilyticus
JA2]
gi|332110470|gb|EGJ10793.1| type III secretion system protein YscR [Rubrivivax benzoatilyticus
JA2]
Length = 220
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 73/209 (34%), Positives = 120/209 (57%), Gaps = 6/209 (2%)
Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
+L++AP + +MVT F + ++V S+LR +G+ VPPN+V+ +AL ++ YVM P
Sbjct: 12 LITVVLLALAPFVGVMVTSFTKIVVVLSLLRNALGLQQVPPNVVLNGMALVLSIYVMYPV 71
Query: 103 LDRSIEMGIQPLMNNQI------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
+ E Q +Q A EP F+ ++ + F++ +
Sbjct: 72 GLQMAERVGQSQSQSQAAGRGTEALLAAADAAKEPLREFLIQHSNPDERRFFLETLRRNL 131
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ +++P+F+++EL +F+IGFLI LPFL+ID++V+ I+MA+GMMML P
Sbjct: 132 SPAQQQALSERDLVVVVPAFVVNELSVAFQIGFLIFLPFLVIDLVVSNILMALGMMMLSP 191
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
T++SLPFK++ FVL+DGW L LV S+
Sbjct: 192 TTVSLPFKLLLFVLVDGWVKLSHGLVLSY 220
>gi|254185167|ref|ZP_04891756.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1655]
gi|184215759|gb|EDU12740.1| type III secretion apparatus protein, YscR/HrcR family
[Burkholderia pseudomallei 1655]
Length = 226
Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats.
Identities = 56/217 (25%), Positives = 116/217 (53%), Gaps = 10/217 (4%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM
Sbjct: 6 IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65
Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + ++ + + I + ++ + + + F + +
Sbjct: 66 MPIAQSAYRYLQHHPLDVMSGASVNEFIDGGLGDYKRYLARYSDPELVRFFERAQTARLK 125
Query: 158 NTDITKND--------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
D D L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+
Sbjct: 126 GDDADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLAL 185
Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 186 GMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222
>gi|76152316|gb|ABA39817.1| HrcR [Erwinia pyrifoliae]
Length = 217
Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats.
Identities = 66/205 (32%), Positives = 116/205 (56%), Gaps = 2/205 (0%)
Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
LS+ P+L+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+P
Sbjct: 13 LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72
Query: 104 DRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
++ + Q + + T++ P FM +NT L + +
Sbjct: 73 NQMQQQFSQVPADLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS 132
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 133 DSVSKRHVLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192
Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
P K++ FVLI+GW+ L++ L S++
Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217
>gi|188534036|ref|YP_001907833.1| surface presentation of antigens protein SpaP [Erwinia tasmaniensis
Et1/99]
gi|188029078|emb|CAO96946.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
Length = 223
Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 113/213 (53%), Gaps = 6/213 (2%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + + ++ P ++ TCF +F IV ++R +G+ VP NL + +AL +T +VM
Sbjct: 6 ISLIALLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGVALVLTAFVM 65
Query: 100 SPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH- 156
P R N + + + E + ++ + + F ++ H +
Sbjct: 66 MPVCQRISGYIEAKSLDFNERGALSQLMNEGIESYREYLVRYSDHNLILFFNNVEHRNEV 125
Query: 157 ---RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
+ + L+P++ +SE++ +F I F + +PF++ID++V++I++A+GMMM
Sbjct: 126 TLEDRVPDEELSQLSLLTLMPAYALSEIQSAFRIAFYLYIPFVVIDLVVSSILLALGMMM 185
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ P +IS+P K+I FV +DGW+LL + L+ ++
Sbjct: 186 MSPVTISIPIKLILFVAMDGWALLAKGLITQYL 218
>gi|329902179|ref|ZP_08273068.1| type III secretion protein HrcR [Oxalobacteraceae bacterium
IMCC9480]
gi|327548850|gb|EGF33479.1| type III secretion protein HrcR [Oxalobacteraceae bacterium
IMCC9480]
Length = 217
Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 113/215 (52%), Gaps = 2/215 (0%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
+ IV + +L++ P++++ T F + +V + R +G+ VPP L I +AL
Sbjct: 2 GAGKFDIVSFSILLAMLALVPLIVVTTTSFLKIALVMLVTRNALGVQQVPPTLAIYGIAL 61
Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR--VAEPFWVFMRNNTREKDLSLFMD 150
+T +VMSPT+ T+ EP FM + + + +F+
Sbjct: 62 SLTLFVMSPTVQEIGNHVAAMEAEQTTTKRGVADAQIAFEPLRTFMLKHCKPEQREIFLA 121
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
A + + +L+P+F++SEL+ +E+ FLI +PF++ID++V+ ++MA+G
Sbjct: 122 SAKKLWPKEFAAEAKSTDVLVLVPAFVVSELQTGYEVAFLIYIPFVVIDLLVSNLLMALG 181
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M + P +I++P K++ FV++DGW L+ L S+
Sbjct: 182 MQQVSPQTITVPLKLLLFVMVDGWGKLLNALAMSY 216
>gi|238899257|ref|YP_002924940.1| type III secretion system protein [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229467018|gb|ACQ68792.1| type III secretion system protein [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 216
Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/214 (33%), Positives = 121/214 (56%), Gaps = 2/214 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + +LSI P+L++M TCF + +VFS+LR +G+ PPN+ I LAL
Sbjct: 2 ELVNSSYELITLLFLLSIFPLLVVMGTCFLKLSVVFSLLRNALGVQQTPPNIAIYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T ++M+P E ++ + +P+ F+ +NT + ++ F DM
Sbjct: 62 LTIFIMAPVGLEVNESLKGEKLSQDFGTFVEQINSKALDPYRQFLLHNTSSEQINFFSDM 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
++ K IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGM
Sbjct: 122 IKNNWPKKYRDKVASDSLLILMPAFTVSQLIEAFKIGLLLYLPFVAIDLIVSNILLAMGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MM+ P +ISLPFK++ F+L+ GW +++ L S+
Sbjct: 182 MMMSPMTISLPFKILIFLLVGGWDMILGQLAGSY 215
>gi|62085087|gb|AAX62950.1| putative type III secretion apparatus integral membrane protein
component [Escherichia coli]
Length = 220
Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 58/213 (27%), Positives = 117/213 (54%), Gaps = 5/213 (2%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH- 153
+VM P NN + ++ + ++ + + ++ F +
Sbjct: 62 FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121
Query: 154 -SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 M-SPVTISTPIKLILFVAMDGWTMLSKGLILQY 213
>gi|222082189|ref|YP_002541554.1| type III secretion system protein [Agrobacterium radiobacter K84]
gi|221726868|gb|ACM29957.1| type III secretion apparatus protein, YscR/HrcR family
[Agrobacterium radiobacter K84]
Length = 218
Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/207 (32%), Positives = 118/207 (57%), Gaps = 2/207 (0%)
Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
+ +SI P++ ++ T F + +V I+R +G+ PPNL++ ++A+ ++ +VM+
Sbjct: 10 QGLAAMAAISILPVIAVVATSFTKIAVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMN 69
Query: 101 PTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
P L + ++ ++ + + V P FM + E+ F++ + +
Sbjct: 70 PILQQCWQVLLRADVHFDTINGLAAGLSEVGAPLKAFMMKFSDEEVRQFFVNSSQRIWGD 129
Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
T + +L PSF++SEL R+FEIGFL+ LPFL+ID V+ I++A+GM M+ PT
Sbjct: 130 TATLPASPDDITVLTPSFLVSELTRAFEIGFLLYLPFLMIDFAVSAILVALGMQMMSPTV 189
Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
+S PFK++ FV +DGW L+E LV S+
Sbjct: 190 VSTPFKLLLFVGVDGWRRLLEGLVLSY 216
>gi|212702682|ref|ZP_03310810.1| hypothetical protein DESPIG_00710 [Desulfovibrio piger ATCC 29098]
gi|212673954|gb|EEB34437.1| hypothetical protein DESPIG_00710 [Desulfovibrio piger ATCC 29098]
Length = 218
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/196 (34%), Positives = 113/196 (57%), Gaps = 3/196 (1%)
Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
P LL+MVT + + ++V S++R +G+ VPP +V+ LA+ +T ++M+P + + +
Sbjct: 22 PFLLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILTVFIMAPVAMDTKALLEE 81
Query: 113 PLMNNQI---TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
+ +Q V+ P F+ NT L FM A
Sbjct: 82 QRFSANPKPSEMLETLQAVSPPLRQFLEKNTSPAILQEFMGTAQRIWPEHQRQSITRDNL 141
Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
IL+P+F I+EL ++F+IGFL+ LPF+ ID+I++ +++AMGMMM+ P +ISLPFK++ FV
Sbjct: 142 FILVPAFTITELTKAFQIGFLLYLPFVAIDLIISNVLLAMGMMMVSPMTISLPFKLLLFV 201
Query: 230 LIDGWSLLVENLVKSF 245
+DGW + + L+ S+
Sbjct: 202 TLDGWLKISQGLLLSY 217
>gi|256259402|gb|ACU65039.1| HrcR [Pseudomonas syringae pv. syringae]
Length = 208
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 2/207 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
LS+ P LL++ T F + V I R +G+ VPPN+ + +AL T +VM+P
Sbjct: 2 LALFLGALSLLPFLLVVCTSFLKIASVLLITRNAIGVQQVPPNMALYGIALAATLFVMAP 61
Query: 102 TLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + + T + + + P FM +N L+ + A
Sbjct: 62 VFSEIATIAQDNPLQLRDTRDLTRSAKALLAPLQAFMNHNVDPDVLTHLHENALRMWPKD 121
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ +LIP+F++SEL+ +FEIGFLI +PF++ID+IV+ +++A+GM M+ P +I
Sbjct: 122 MAAAASRGDLLLLIPAFVLSELQAAFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTI 181
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
SLP K++ FVL+ GW+ L+++L S++
Sbjct: 182 SLPLKILLFVLVSGWTRLLDSLFYSYM 208
>gi|320193801|gb|EFW68434.1| type III secretion system protein [Escherichia coli WV_060327]
Length = 217
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 123/208 (59%), Gaps = 4/208 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T
Sbjct: 9 SQPIFLIIVFFLLSLLPIFVVVGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTM 68
Query: 97 YVMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
++MSP + + + Q +N + +++ P+ F+ NT + ++ F A
Sbjct: 69 FIMSPIILQINDNISQEQINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQK 128
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
N I K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+
Sbjct: 129 KLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMV 186
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLV 242
P +IS+PFK++ F+L+ GW L E L+
Sbjct: 187 SPVTISIPFKILLFILVGGWQKLFEFLL 214
>gi|170698145|ref|ZP_02889224.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
gi|170136910|gb|EDT05159.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
Length = 223
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 58/214 (27%), Positives = 113/214 (52%), Gaps = 7/214 (3%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + + ++ P ++ TC+ +F IV ++R +G+ VP NLV+ S+AL ++ +VM
Sbjct: 6 ILLIVLLSAATLLPFVIASGTCYVKFSIVLVLVRNALGIQQVPSNLVLNSIALILSLFVM 65
Query: 100 SPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM-----DMA 152
P R+ Q M N + + + ++ + F A
Sbjct: 66 MPVSYRAYGYLQTHQVDMTNSQSLHDFVDGGLGDYKHYLERYADPSLVKFFAHAQAPRDA 125
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
D +L+P++ +SE++ +F+IGF + +PFL++D+IV+ +++A+GMM
Sbjct: 126 DDGAATDDDPSAREHALTVLLPAYALSEIKSAFKIGFYLYVPFLVVDLIVSNVLLALGMM 185
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+ P +IS+P K+I FV +DGW+L+ + L+ ++
Sbjct: 186 MMSPVTISVPIKLILFVAMDGWTLICKGLILQYM 219
>gi|110632472|ref|YP_672680.1| type III secretion system protein [Mesorhizobium sp. BNC1]
gi|110283456|gb|ABG61515.1| Yop virulence translocation R [Chelativorans sp. BNC1]
Length = 220
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 76/214 (35%), Positives = 116/214 (54%), Gaps = 2/214 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
I+ T LS P +++M T F + IV +LR +G+ P LVI S+AL
Sbjct: 5 ENFPAILPTIIAVMALSFIPFIVVMGTAFTKISIVLMLLRNAIGVQQAPSGLVINSIALT 64
Query: 94 MTFYVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T +VM P + I Q + V+E F +++ + ++L FMD
Sbjct: 65 LTVFVMVPVGNAIITQVQQQQLGFTGWENVSQLYSVVSEAFTGYLKQFSSPRELQFFMDA 124
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
A T + IL+P+ + SEL R+F+I FLI LPF+++DM+V+ I++AMG
Sbjct: 125 ARKMWPETLHGQITTDNVFILLPAHVTSELTRAFQIAFLIFLPFVVVDMVVSNILLAMGA 184
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MM+PP +SLP K++ FV DGW+LL+ NLV S+
Sbjct: 185 MMVPPMLVSLPIKILLFVAADGWALLLHNLVLSY 218
>gi|15804244|ref|NP_290283.1| type III secretion system protein [Escherichia coli O157:H7 EDL933]
gi|168748640|ref|ZP_02773662.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4113]
gi|168753533|ref|ZP_02778540.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4401]
gi|168759830|ref|ZP_02784837.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4501]
gi|168766130|ref|ZP_02791137.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4486]
gi|168772321|ref|ZP_02797328.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4196]
gi|168779865|ref|ZP_02804872.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4076]
gi|168785598|ref|ZP_02810605.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC869]
gi|168798679|ref|ZP_02823686.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC508]
gi|193069204|ref|ZP_03050161.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli E110019]
gi|195936266|ref|ZP_03081648.1| type III secretion system protein [Escherichia coli O157:H7 str.
EC4024]
gi|208806674|ref|ZP_03249011.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4206]
gi|208812050|ref|ZP_03253379.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4045]
gi|208819434|ref|ZP_03259754.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4042]
gi|209398112|ref|YP_002273179.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4115]
gi|215488994|ref|YP_002331425.1| type III secretion system protein [Escherichia coli O127:H6 str.
E2348/69]
gi|217324318|ref|ZP_03440402.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. TW14588]
gi|254795658|ref|YP_003080495.1| type III secretion system protein [Escherichia coli O157:H7 str.
TW14359]
gi|260869701|ref|YP_003236103.1| T3SS structure protein EscR [Escherichia coli O111:H- str. 11128]
gi|261225802|ref|ZP_05940083.1| LEE-encoded type III secretion system factor [Escherichia coli
O157:H7 str. FRIK2000]
gi|261258847|ref|ZP_05951380.1| T3SS structure protein EscR [Escherichia coli O157:H7 str. FRIK966]
gi|291285071|ref|YP_003501889.1| Type III secretion system EscR protein [Escherichia coli O55:H7
str. CB9615]
gi|312967934|ref|ZP_07782146.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|12518477|gb|AAG58847.1|AE005597_5 escR [Escherichia coli O157:H7 str. EDL933]
gi|3414917|gb|AAC31528.1| L0049 [Escherichia coli]
gi|54311600|emb|CAG17515.1| EscR protein [Escherichia coli]
gi|187771664|gb|EDU35508.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4196]
gi|188016994|gb|EDU55116.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4113]
gi|189002477|gb|EDU71463.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4076]
gi|189358993|gb|EDU77412.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4401]
gi|189364379|gb|EDU82798.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4486]
gi|189369636|gb|EDU88052.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4501]
gi|189374319|gb|EDU92735.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC869]
gi|189378860|gb|EDU97276.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC508]
gi|192957528|gb|EDV87974.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli E110019]
gi|195957534|gb|ACG59645.1| type III secretion system protein EscR [Escherichia coli O157:H7]
gi|195957593|gb|ACG59703.1| type III secretion system protein EscR [Escherichia coli]
gi|195957650|gb|ACG59759.1| type III secretion system protein EscR [Escherichia coli]
gi|208726475|gb|EDZ76076.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4206]
gi|208733327|gb|EDZ82014.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4045]
gi|208739557|gb|EDZ87239.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4042]
gi|209159512|gb|ACI36945.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. EC4115]
gi|215267066|emb|CAS11511.1| T3SS structure protein EscR [Escherichia coli O127:H6 str.
E2348/69]
gi|217320539|gb|EEC28963.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli O157:H7 str. TW14588]
gi|221361440|emb|CAX18593.1| Type III secretion system, LEE associated [Escherichia coli]
gi|221361497|emb|CAX18668.1| Type III secretion system, LEE associated [Escherichia coli]
gi|221361558|emb|CAX18748.1| Type III secretion system, LEE associated [Escherichia coli]
gi|254595058|gb|ACT74419.1| LEE-encoded type III secretion system factor [Escherichia coli
O157:H7 str. TW14359]
gi|255348331|gb|ACU09473.1| type III secretion system protein EscR [Escherichia coli]
gi|257766057|dbj|BAI37552.1| T3SS structure protein EscR [Escherichia coli O111:H- str. 11128]
gi|290764944|gb|ADD58905.1| Type III secretion system EscR protein [Escherichia coli O55:H7
str. CB9615]
gi|312287495|gb|EFR15403.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|320639373|gb|EFX08988.1| type III secretion system protein YscR [Escherichia coli O157:H7
str. G5101]
gi|320644817|gb|EFX13853.1| type III secretion system protein YscR [Escherichia coli O157:H-
str. 493-89]
gi|320650081|gb|EFX18577.1| type III secretion system protein YscR [Escherichia coli O157:H-
str. H 2687]
gi|320655428|gb|EFX23363.1| type III secretion system protein YscR [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320661054|gb|EFX28490.1| type III secretion system protein YscR [Escherichia coli O55:H7
str. USDA 5905]
gi|320666180|gb|EFX33186.1| type III secretion system protein YscR [Escherichia coli O157:H7
str. LSU-61]
Length = 217
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 123/208 (59%), Gaps = 4/208 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T
Sbjct: 9 SQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTM 68
Query: 97 YVMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
++MSP + + + Q +N + +++ P+ F+ NT + ++ F A
Sbjct: 69 FIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQK 128
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
N I K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+
Sbjct: 129 KLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMV 186
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLV 242
P +IS+PFK++ F+L+ GW L E L+
Sbjct: 187 SPVTISIPFKILLFILVGGWQKLFEFLL 214
>gi|188534810|ref|YP_001908607.1| surface presentation of antigens protein SpaP [Erwinia tasmaniensis
Et1/99]
gi|188029852|emb|CAO97733.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
Length = 223
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 55/215 (25%), Positives = 113/215 (52%), Gaps = 6/215 (2%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + + + ++ P L+ TCF +F IV ++R +G+ VP L + +AL +T
Sbjct: 3 SNDISLIALLSFFTLLPFLIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALILTA 62
Query: 97 YVMSPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P + NN + + + + ++ + + + + F +
Sbjct: 63 FVMMPVCQKVSGYIESHHIDFNNSASINQLMDQGLGSYRDYLVHYSDHELIRFFNQVQQQ 122
Query: 155 SHRNTDITKND----HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
T + + L+P++ +SE++ +F+I F + +PF++IDM+V++I++A+G
Sbjct: 123 KTGETIPEVEEHELRSLSLITLMPAYALSEIQSAFKIAFYLYVPFVVIDMVVSSILLALG 182
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MMM+ P +IS+P K+I FV ++GWSLL + ++ +
Sbjct: 183 MMMMSPVTISIPIKLILFVSMNGWSLLTKGMIAQY 217
>gi|238898597|ref|YP_002924278.1| type III surface presentation of antigens protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|75906094|gb|ABA29437.1| putative type III secretion system protein [Candidatus Hamiltonella
defensa]
gi|229466356|gb|ACQ68130.1| type III surface presentation of antigens protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 221
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/210 (24%), Positives = 112/210 (53%), Gaps = 3/210 (1%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ I ++ P ++ TC+ +F IVF ++R +G+ +P N+ + +AL + +VM
Sbjct: 5 ISLISILAFSTLLPFVIASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVM 64
Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + E + N + ++ + + ++ + F A
Sbjct: 65 MPIVKNIYEGHKNAQFDVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKE 124
Query: 158 NTDITKNDHIE-YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ L+P++ +SE++ +F+IGF I LPF+++D+++++I++A+GMMM+ P
Sbjct: 125 EDFAGAEEEKPSIFALLPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILLALGMMMMSP 184
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+IS+P K++ FV++DGW+L+ + ++ ++
Sbjct: 185 VTISVPIKLVLFVVLDGWTLISKGMILQYM 214
>gi|15833837|ref|NP_312610.1| type III secretion system protein [Escherichia coli O157:H7 str.
Sakai]
gi|13364058|dbj|BAB38006.1| type III secretion system EscR protein [Escherichia coli O157:H7
str. Sakai]
Length = 217
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 122/208 (58%), Gaps = 4/208 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + +F +LS+ PI + + T F + IV IL+ +G+ VPPN+ + S++L +T
Sbjct: 9 SQPIFLIIVFFLLSLLPIFVGIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTM 68
Query: 97 YVMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
++MSP + + + Q +N + +++ P+ F+ NT + ++ F A
Sbjct: 69 FIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQK 128
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
N I K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+
Sbjct: 129 KLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMV 186
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLV 242
P +IS+PFK++ F+L+ GW L E L+
Sbjct: 187 SPVTISIPFKILLFILVGGWQKLFEFLL 214
>gi|296162490|ref|ZP_06845281.1| Yop virulence translocation R [Burkholderia sp. Ch1-1]
gi|295887303|gb|EFG67130.1| Yop virulence translocation R [Burkholderia sp. Ch1-1]
Length = 211
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 70/208 (33%), Positives = 117/208 (56%), Gaps = 4/208 (1%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
++T +F +L + P+ + M T F +F IV ++LR+ +G+ P NLVI LAL T V
Sbjct: 7 PLQTISLFFMLGLMPLAVAMTTSFTKFSIVLTLLRSALGVQQAPSNLVISGLALAATLVV 66
Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
M+PT+ + E + T +Q V P FM ++R + + A
Sbjct: 67 MAPTISKI-EAALDNGDGAMPRATELLQAVRGPLGDFMLKHSRADERQFLVGAAKRIDPE 125
Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
+ + ++LIP+F+ISE+ FE GFL+ + FL++D++VA ++ AMGMMML P++
Sbjct: 126 REAR---ETDMQLLIPAFLISEISSGFEAGFLLYIAFLVVDLVVANVLSAMGMMMLSPST 182
Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+S+P K+ FV + G S L+ L+ S++
Sbjct: 183 VSIPLKLFIFVSVSGMSKLMHGLIVSYV 210
>gi|194426341|ref|ZP_03058896.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli B171]
gi|260845712|ref|YP_003223490.1| T3SS structure protein EscR [Escherichia coli O103:H2 str. 12009]
gi|260858247|ref|YP_003232138.1| T3SS structure protein EscR [Escherichia coli O26:H11 str. 11368]
gi|13447701|gb|AAK26700.1|AF200363_8 EscR [Escherichia coli]
gi|18034505|gb|AAL57527.1|AF453441_11 EscR [Escherichia coli]
gi|17384635|emb|CAC81847.1| EscR protein [Escherichia coli]
gi|57434472|emb|CAI43889.1| EscR protein [Escherichia coli]
gi|189473194|gb|ACD99645.1| putative EscR [Escherichia coli]
gi|194415649|gb|EDX31916.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli B171]
gi|195183213|dbj|BAG66758.1| T3SS structure protein EscR [Escherichia coli O111:H-]
gi|254692325|emb|CAR47966.1| EscR protein [Escherichia coli]
gi|254692393|emb|CAR48036.1| EscR protein [Escherichia coli]
gi|257756896|dbj|BAI28398.1| T3SS structure protein EscR [Escherichia coli O26:H11 str. 11368]
gi|257760859|dbj|BAI32356.1| T3SS structure protein EscR [Escherichia coli O103:H2 str. 12009]
Length = 217
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 124/208 (59%), Gaps = 4/208 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T
Sbjct: 9 SQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTM 68
Query: 97 YVMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
++MSP + + + Q +N + +++ P+ F+ NT ++++ F A
Sbjct: 69 FIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFERAAQK 128
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
N I K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+
Sbjct: 129 KLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMV 186
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLV 242
P +IS+PFK++ F+L+ GW L E L+
Sbjct: 187 SPVTISIPFKILLFILVGGWQKLFEFLL 214
>gi|74317113|ref|YP_314853.1| flagellar biosynthesis protein FliP [Thiobacillus denitrificans
ATCC 25259]
gi|74056608|gb|AAZ97048.1| flagellar transport protein FliP [Thiobacillus denitrificans ATCC
25259]
Length = 241
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 85/245 (34%), Positives = 131/245 (53%), Gaps = 4/245 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
M R L L TP L + + A + + + P LL+ T
Sbjct: 1 MSRLLLLTLALSTPALGAEPTVPLLAVTPAAGGEVIGVPAASLPWLLLFPFLPALLLAFT 60
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R +V +LR G+G + PPNLV+ LA+ +T +VMSP L +P + +
Sbjct: 61 AFTRIAVVLFLLRQGIGSPTAPPNLVLTGLAVLLTLFVMSPALKTINADAYEPYLAGTLA 120
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
A A P FM + TR +DL+LF++ D + + + L P+F+ SE
Sbjct: 121 LDEAAAEAAAPLKRFMLHQTRAEDLALFVE----DDPTVDPRRAETVPLAALAPAFLTSE 176
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGF+++LPFL+ID++VA ++ A+GM+MLPP +SLP K++ FV +DGW LLV +
Sbjct: 177 LKTAFQIGFMVVLPFLVIDLVVAAVLTALGMIMLPPQLVSLPLKLLLFVAVDGWHLLVGS 236
Query: 241 LVKSF 245
L+ SF
Sbjct: 237 LIGSF 241
>gi|120609152|ref|YP_968830.1| type III secretion system protein [Acidovorax citrulli AAC00-1]
gi|120587616|gb|ABM31056.1| Yop virulence translocation R [Acidovorax citrulli AAC00-1]
gi|251825694|gb|ACT20915.1| type III secretion system structural protein [Acidovorax citrulli]
gi|255047057|gb|AAW81014.2| HrcR [Acidovorax citrulli]
Length = 220
Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 113/197 (57%), Gaps = 4/197 (2%)
Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P + +
Sbjct: 23 PFAAMIVTSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQM 82
Query: 113 PLMNNQITETT----AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
+ Q + T A EPF F+ + + + F+ A + +
Sbjct: 83 LPPSAQSSNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEERARSLQADD 142
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+L P+F+++EL +F IGFL+ L F+I+++++A +++AMG+ + PT++++PFK++ F
Sbjct: 143 LVVLAPAFLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKLLLF 202
Query: 229 VLIDGWSLLVENLVKSF 245
V++DGWS ++ LV ++
Sbjct: 203 VVLDGWSQVMHGLVMTY 219
>gi|167550261|ref|ZP_02344018.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|168463975|ref|ZP_02697892.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|238909657|ref|ZP_04653494.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|195633254|gb|EDX51668.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|205324695|gb|EDZ12534.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
Length = 224
Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats.
Identities = 51/216 (23%), Positives = 114/216 (52%), Gaps = 9/216 (4%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM
Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64
Query: 100 SPTLDR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + N+ + + + + + ++ + + + F +
Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124
Query: 158 NTDIT-------KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G
Sbjct: 125 GEDTETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MMM+ P +IS P K++ FV +DGW+LL + L+ ++
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220
>gi|153003617|ref|YP_001377942.1| type III secretion system protein [Anaeromyxobacter sp. Fw109-5]
gi|152027190|gb|ABS24958.1| Yop virulence translocation R [Anaeromyxobacter sp. Fw109-5]
Length = 223
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 70/189 (37%), Positives = 115/189 (60%), Gaps = 2/189 (1%)
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
M+T F + ++V SI R+ +G VPPN + LAL +T VM+P +R++ +
Sbjct: 34 MLTSFLKIVVVLSIARSALGAPQVPPNTAVTGLALVLTALVMAPVGERAVAAMRAAPAGH 93
Query: 118 QITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
+ T A ++R ++P F+ R D + F+D+A R D + +L P+F
Sbjct: 94 GVAGTLAQLERGSDPLRGFLLRFARADDRAAFVDVARR-LRGPDAAPPAERDLAVLAPAF 152
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
++SELRR+F IGFL+ +PFL++D++V+ +++A+G+ L PTSI+LPFK++ FV +DGW L
Sbjct: 153 VVSELRRAFTIGFLVFVPFLVVDLVVSNVLLALGLTQLSPTSIALPFKLLLFVAVDGWKL 212
Query: 237 LVENLVKSF 245
L L S+
Sbjct: 213 LARALALSY 221
>gi|56414842|ref|YP_151917.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197363770|ref|YP_002143407.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|56129099|gb|AAV78605.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197095247|emb|CAR60798.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
Length = 224
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 51/216 (23%), Positives = 114/216 (52%), Gaps = 9/216 (4%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM
Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64
Query: 100 SPTLDR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + N+ + + + + + ++ + + + F +
Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLSKYSDRELVQFFENAQLKRQY 124
Query: 158 -------NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G
Sbjct: 125 GEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MMM+ P +IS P K++ FV +DGW+LL + L+ ++
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220
>gi|34498062|ref|NP_902277.1| type III secretion system protein [Chromobacterium violaceum ATCC
12472]
gi|34332839|gb|AAQ60277.2| type III secretion system EscR protein [Chromobacterium violaceum
ATCC 12472]
Length = 216
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 68/214 (31%), Positives = 122/214 (57%), Gaps = 2/214 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S+ ++ + LSI P+L+++ T F + +VF++LR +G+ +PPN+ + LAL
Sbjct: 2 SLLDQPLQLIVLLFALSILPLLVVLGTSFLKLAVVFALLRNALGIQQIPPNIALYGLALI 61
Query: 94 MTFYVMSPTLDRSIEMGI-QPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDM 151
+T ++M+P + I P+ ++ P+ VF+ NT + + F D+
Sbjct: 62 LTLFIMAPIGLEIQDNLIAHPIKIESPAFIQQVESGVFTPYRVFLERNTAPEQVHFFADI 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
H + +L+P+F +S+L +F+IG L+ LPF+ ID++V+ +++AMGM
Sbjct: 122 GHQIWPEKYQQRIPDNSLLVLMPAFTVSQLIEAFKIGLLLFLPFVAIDLVVSNVLLAMGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MM+ P +IS+P K++ FVL++GW L+ LV SF
Sbjct: 182 MMVSPMTISMPLKLLVFVLMNGWEKLLGQLVLSF 215
>gi|326315333|ref|YP_004233005.1| Yop virulence translocation R [Acidovorax avenae subsp. avenae ATCC
19860]
gi|89111159|dbj|BAE80249.1| HrcR [Acidovorax avenae subsp. avenae]
gi|89111192|dbj|BAE80281.1| HrcR [Acidovorax avenae subsp. avenae]
gi|323372169|gb|ADX44438.1| Yop virulence translocation R [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 220
Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 113/197 (57%), Gaps = 4/197 (2%)
Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P + +
Sbjct: 23 PFAAMIVTSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQM 82
Query: 113 PLMNNQITETT----AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
+ Q + T A EPF F+ + + + F+ A + +
Sbjct: 83 LPPSAQSSNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEDRARSLQADD 142
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+L P+F+++EL +F IGFL+ L F+I+++++A +++AMG+ + PT++++PFK++ F
Sbjct: 143 LVVLAPAFLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKLLLF 202
Query: 229 VLIDGWSLLVENLVKSF 245
V++DGWS ++ LV ++
Sbjct: 203 VVLDGWSQVMHGLVMTY 219
>gi|16766196|ref|NP_461811.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|62181392|ref|YP_217809.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|161615802|ref|YP_001589767.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167993125|ref|ZP_02574220.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168230960|ref|ZP_02656018.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|168235930|ref|ZP_02660988.1| type III secretion apparatus protein, YscR/HrcR family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168242627|ref|ZP_02667559.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168261987|ref|ZP_02683960.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168820413|ref|ZP_02832413.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194445004|ref|YP_002042131.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194448886|ref|YP_002046850.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194468694|ref|ZP_03074678.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194737581|ref|YP_002115842.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197248290|ref|YP_002147787.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197263760|ref|ZP_03163834.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|198245023|ref|YP_002216859.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|200387886|ref|ZP_03214498.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204928065|ref|ZP_03219265.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205353833|ref|YP_002227634.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207858152|ref|YP_002244803.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|224584668|ref|YP_002638466.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|730796|sp|P40700|SPAP_SALTY RecName: Full=Surface presentation of antigens protein spaP
gi|7448018|pir||T11207 spaP protein - Salmonella dublin
gi|404291|emb|CAA51925.1| surface presentation of antigens [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|973258|gb|AAC43936.1| SpaP [Salmonella enterica subsp. enterica serovar Dublin]
gi|973262|gb|AAC43966.1| SpaP [Salmonella enterica subsp. enterica serovar Senftenberg]
gi|973266|gb|AAC43963.1| SpaP [Salmonella enterica subsp. enterica serovar Gallinarum]
gi|973270|gb|AAC43939.1| SpaP [Salmonella enterica]
gi|973274|gb|AAC43942.1| SpaP [Salmonella enterica]
gi|973286|gb|AAC43951.1| SpaP [Salmonella enterica]
gi|973290|gb|AAC43954.1| SpaP [Salmonella enterica]
gi|973294|gb|AAC43957.1| SpaP [Salmonella enterica]
gi|975763|gb|AAC43852.1| SpaP [Salmonella enterica]
gi|975767|gb|AAC43858.1| SpaP [Salmonella enterica subsp. enterica serovar Typhisuis]
gi|975775|gb|AAC43864.1| SpaP [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|975779|gb|AAC43855.1| SpaP [Salmonella enterica subsp. enterica serovar Enteritidis]
gi|16421438|gb|AAL21770.1| surface presentation of antigens [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|62129025|gb|AAX66728.1| surface presentation of antigens; secretory proteins [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161365166|gb|ABX68934.1| hypothetical protein SPAB_03593 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403667|gb|ACF63889.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194407190|gb|ACF67409.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194455058|gb|EDX43897.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194713083|gb|ACF92304.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197211993|gb|ACH49390.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197242015|gb|EDY24635.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197290886|gb|EDY30240.1| type III secretion apparatus protein, YscR/HrcR family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197939539|gb|ACH76872.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199604984|gb|EDZ03529.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204322387|gb|EDZ07584.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205273614|emb|CAR38601.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|205328735|gb|EDZ15499.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205334464|gb|EDZ21228.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205338099|gb|EDZ24863.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205342860|gb|EDZ29624.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205349049|gb|EDZ35680.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|206709955|emb|CAR34309.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|218988950|gb|ACL13613.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. salamae serovar Sofia]
gi|224469195|gb|ACN47025.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|261248026|emb|CBG25859.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267995018|gb|ACY89903.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301159449|emb|CBW18967.1| type III secretion system secretory apparatus [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312913908|dbj|BAJ37882.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320087295|emb|CBY97060.1| Surface presentation of antigens protein spaP [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321223439|gb|EFX48505.1| Surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322614292|gb|EFY11223.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322621644|gb|EFY18497.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322624505|gb|EFY21338.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322628836|gb|EFY25619.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322633437|gb|EFY30179.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635987|gb|EFY32695.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322639695|gb|EFY36380.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322646878|gb|EFY43381.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322650646|gb|EFY47051.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322654741|gb|EFY51060.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658962|gb|EFY55215.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322664471|gb|EFY60665.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322668280|gb|EFY64437.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322673740|gb|EFY69841.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322677801|gb|EFY73864.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322681369|gb|EFY77401.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322683771|gb|EFY79781.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|322715876|gb|EFZ07447.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|323131242|gb|ADX18672.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323193840|gb|EFZ79043.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323200310|gb|EFZ85392.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323203187|gb|EFZ88216.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323205566|gb|EFZ90531.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323210077|gb|EFZ94980.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323216380|gb|EGA01107.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323221127|gb|EGA05558.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323226949|gb|EGA11131.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230767|gb|EGA14885.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323234882|gb|EGA18968.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323238921|gb|EGA22971.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323241621|gb|EGA25652.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323248232|gb|EGA32168.1| type III secretion system protein SpaP [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251184|gb|EGA35057.1| type III secretion system protein SpaP [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256068|gb|EGA39806.1| type III secretion system protein SpaP [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323263203|gb|EGA46741.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323264294|gb|EGA47800.1| type III secretion system protein SpaP [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271120|gb|EGA54548.1| type III secretion system protein SpaP [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326624621|gb|EGE30966.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326628942|gb|EGE35285.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
gi|332989762|gb|AEF08745.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 224
Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats.
Identities = 51/216 (23%), Positives = 114/216 (52%), Gaps = 9/216 (4%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM
Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64
Query: 100 SPTLDR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + N+ + + + + + ++ + + + F +
Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124
Query: 158 -------NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G
Sbjct: 125 GEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MMM+ P +IS P K++ FV +DGW+LL + L+ ++
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220
>gi|973298|gb|AAC43960.1| SpaP [Salmonella enterica]
gi|975743|gb|AAC43837.1| SpaP [Salmonella enterica]
gi|975747|gb|AAC43840.1| SpaP [Salmonella enterica]
gi|975751|gb|AAC43843.1| SpaP [Salmonella enterica]
Length = 224
Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats.
Identities = 51/216 (23%), Positives = 114/216 (52%), Gaps = 9/216 (4%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM
Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64
Query: 100 SPTLDR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + N+ + + + + + ++ + + + F +
Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124
Query: 158 -------NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G
Sbjct: 125 GEETEAVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MMM+ P +IS P K++ FV +DGW+LL + L+ ++
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220
>gi|161502066|ref|YP_001569178.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|973278|gb|AAC43945.1| SpaP [Salmonella enterica]
gi|973282|gb|AAC43948.1| SpaP [Salmonella enterica]
gi|160863413|gb|ABX20036.1| hypothetical protein SARI_00083 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 224
Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats.
Identities = 51/216 (23%), Positives = 114/216 (52%), Gaps = 9/216 (4%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM
Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGIALLLSMFVM 64
Query: 100 SPTLDR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + N+ + + + + + ++ + + + F +
Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124
Query: 158 -------NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G
Sbjct: 125 GEETEAVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MMM+ P +IS P K++ FV +DGW+LL + L+ ++
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220
>gi|323388136|gb|ADX60332.1| type III secretion protein RscR [Pseudomonas fluorescens]
Length = 217
Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 117/210 (55%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ LS+ P+LLI+ T F + +IV I R +G+ VPP++ I +AL T ++
Sbjct: 8 PLVLALFLGSLSLMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFI 67
Query: 99 MSPTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P + E ++ + Q +P FM NT L+ ++ +
Sbjct: 68 MAPVGYQIAENVKASPVDTSSVQSLLETGQAAIQPLRAFMLRNTDADVLTHLLENSARMW 127
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ +L+P+F++S+L+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 128 PPEMAQSTQREDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 187
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ISLP K++ FV++ GWS L+++L S++
Sbjct: 188 MTISLPLKLLLFVMVSGWSRLLDSLFLSYL 217
>gi|16761667|ref|NP_457284.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29143151|ref|NP_806493.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|213052434|ref|ZP_03345312.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213425708|ref|ZP_03358458.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213580302|ref|ZP_03362128.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213609304|ref|ZP_03369130.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
gi|213649910|ref|ZP_03379963.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213853010|ref|ZP_03382542.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|289810466|ref|ZP_06541095.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
gi|289829392|ref|ZP_06547004.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|2494565|sp|Q56023|SPAP_SALTI RecName: Full=Surface presentation of antigens protein spaP
gi|25316657|pir||AF0851 secretory protein (associated with virulence) [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|975771|gb|AAC43861.1| SpaP [Salmonella enterica subsp. enterica serovar Typhi]
gi|16503968|emb|CAD05997.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29138784|gb|AAO70353.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 224
Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats.
Identities = 52/216 (24%), Positives = 115/216 (53%), Gaps = 9/216 (4%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P ++ TCF +F IVF ++R +G+ +P N+ + S+AL ++ +VM
Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSMFVM 64
Query: 100 SPTLDR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + N+ + + + + + ++ + + + F +
Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124
Query: 158 -------NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G
Sbjct: 125 GEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MMM+ P +IS P K++ FV +DGW+LL + L+ ++
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220
>gi|292487271|ref|YP_003530143.1| surface presentation of antigens protein SpaP [Erwinia amylovora
CFBP1430]
gi|292900357|ref|YP_003539726.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291200205|emb|CBJ47333.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291552690|emb|CBA19735.1| Surface presentation of antigens protein SpaP [Erwinia amylovora
CFBP1430]
gi|312171379|emb|CBX79638.1| Surface presentation of antigens protein SpaP [Erwinia amylovora
ATCC BAA-2158]
Length = 223
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 114/215 (53%), Gaps = 6/215 (2%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + + + ++ P ++ TCF +F IV ++R +G+ VP L + +AL MT
Sbjct: 3 SNDISLIALLSFFTLLPFIIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALIMTA 62
Query: 97 YVMSPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF----MD 150
+VM P + NN + T + + + ++ + + + F
Sbjct: 63 FVMMPICQKISSYVETNHIDFNNSASVTQLMDQGLGGYRDYLVRYSDHELIRYFNKIQQQ 122
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
A S + + + L+P++ +SE++ +F+I F + +PF++ID++V++I++A+G
Sbjct: 123 QAGESAPEVEEHQLSSLSLMTLMPAYALSEIQSAFKIAFYLYVPFVVIDLVVSSILLALG 182
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MMM+ P +IS+P K+I FV ++GWSLL + ++ +
Sbjct: 183 MMMMSPVTISIPIKLILFVAMNGWSLLTKGMIAQY 217
>gi|975755|gb|AAC43846.1| SpaP [Salmonella enterica]
gi|975759|gb|AAC43849.1| SpaP [Salmonella enterica]
Length = 224
Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats.
Identities = 51/216 (23%), Positives = 114/216 (52%), Gaps = 9/216 (4%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM
Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64
Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + + N+ + + + + + ++ + + + F
Sbjct: 65 WPIMHDAYVYFEDEGVSFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFESAQLKRQY 124
Query: 158 -------NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G
Sbjct: 125 GEETETVKRDKEEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MMM+ P +IS P K++ FV +DGW+LL + L+ ++
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220
>gi|160875390|ref|YP_001554706.1| type III secretion system protein [Shewanella baltica OS195]
gi|160860912|gb|ABX49446.1| Yop virulence translocation R [Shewanella baltica OS195]
gi|315267590|gb|ADT94443.1| Yop virulence translocation R [Shewanella baltica OS678]
Length = 216
Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats.
Identities = 66/209 (31%), Positives = 111/209 (53%), Gaps = 2/209 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
++ + LS+ P+ +M T F + IVFS+LR +G+ +PPN+ I LAL +T +
Sbjct: 7 PIQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFT 66
Query: 99 MSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P + + + P+ F+ NT + F ++ H
Sbjct: 67 MAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLEKNTSNTQIEFFANIGHKVW 126
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+++P+F +S+L +F+IG LI LPF+ ID+IV+ I++AMGMMM+ P
Sbjct: 127 PEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSP 186
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+I+LPFK++ F+L+ GW L+ L+ SF
Sbjct: 187 MTIALPFKLLIFILMGGWEKLISQLMMSF 215
>gi|193062099|ref|ZP_03043195.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli E22]
gi|192932319|gb|EDV84917.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli E22]
Length = 217
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 68/208 (32%), Positives = 123/208 (59%), Gaps = 4/208 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T
Sbjct: 9 SQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTM 68
Query: 97 YVMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
++MSP + + + Q +N + +++ P+ F+ N ++++ F A
Sbjct: 69 FIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNIEKENVEFFERAAQK 128
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
N I K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+
Sbjct: 129 KLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMV 186
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLV 242
P +IS+PFK++ F+L+ GW L E L+
Sbjct: 187 SPVTISIPFKILLFILVGGWQKLFEFLL 214
>gi|167840168|ref|ZP_02466852.1| surface presentation of antigens protein SpaP [Burkholderia
thailandensis MSMB43]
Length = 229
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 56/220 (25%), Positives = 115/220 (52%), Gaps = 13/220 (5%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM
Sbjct: 6 IALIVLLAAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65
Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + ++ N + I + ++ + + F + +
Sbjct: 66 MPVAQSAYRYLQHHPLDVMNGASVNDFIDGGLGGYKRYLTRYSDPALVRFFERAQAARLK 125
Query: 158 NTDITKND-----------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
+ D D L+P++ ++E++ +F+IGF + LPFL++DM+V++++
Sbjct: 126 SDDADAADADVAGDGPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVL 185
Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+A+GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 186 LALGMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 225
>gi|2865276|gb|AAC38369.1| EscR [Escherichia coli]
Length = 217
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 68/208 (32%), Positives = 122/208 (58%), Gaps = 4/208 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T
Sbjct: 9 SQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTM 68
Query: 97 YVMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
++MSP + + + Q +N + +++ P+ + NT + ++ F A
Sbjct: 69 FIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGILEKNTEKDNVEFFERAAQK 128
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
N I K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+
Sbjct: 129 KLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMV 186
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLV 242
P +IS+PFK++ F+L+ GW L E L+
Sbjct: 187 SPVTISIPFKILLFILVGGWQKLFEFLL 214
>gi|126174198|ref|YP_001050347.1| type III secretion system protein [Shewanella baltica OS155]
gi|304408581|ref|ZP_07390202.1| Yop virulence translocation R [Shewanella baltica OS183]
gi|307305409|ref|ZP_07585157.1| Yop virulence translocation R [Shewanella baltica BA175]
gi|125997403|gb|ABN61478.1| Yop virulence translocation R [Shewanella baltica OS155]
gi|304352402|gb|EFM16799.1| Yop virulence translocation R [Shewanella baltica OS183]
gi|306911712|gb|EFN42137.1| Yop virulence translocation R [Shewanella baltica BA175]
Length = 216
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 2/209 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
V+ + LS+ P+ +M T F + IVFS+LR +G+ +PPN+ I LAL +T +
Sbjct: 7 PVQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFT 66
Query: 99 MSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P + + + P+ F+ NT + F ++ H
Sbjct: 67 MAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLDKNTSNTQIEFFANIGHKVW 126
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+++P+F +S+L +F+IG LI LPF+ ID+IV+ I++AMGMMM+ P
Sbjct: 127 PEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSP 186
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+I+LPFK++ F+L+ GW L+ L+ SF
Sbjct: 187 MTIALPFKLLIFILMGGWEKLISQLMMSF 215
>gi|300310129|ref|YP_003774221.1| type III secretion HrcR transmembrane protein [Herbaspirillum
seropedicae SmR1]
gi|300072914|gb|ADJ62313.1| type III secretion HrcR transmembrane protein [Herbaspirillum
seropedicae SmR1]
Length = 220
Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/218 (27%), Positives = 117/218 (53%), Gaps = 5/218 (2%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S +V + ++++ P++++ T F + +V +LR +G+ VPP L I +AL
Sbjct: 3 SGQFDVVSFSVLLALMALVPLMVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIALA 62
Query: 94 MTFYVMSPTLDRSIEMGI-----QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
++ ++M+PT+ + + P + + Q +P FM + + +F
Sbjct: 63 LSVFIMAPTVQEVGKRAMAVDVSHPAASRTVPILERAQDAFDPLRKFMLKMSHAEQREMF 122
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
+ A + ILIP+F++SEL+ +EIGFLI +PF++ID++++ ++MA
Sbjct: 123 LASAKKLWPKEAAKDAQPTDALILIPAFVVSELQTGYEIGFLIYIPFVVIDLLISNLLMA 182
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+GM + P +I++P K++ F L+ GW+ L+ L S++
Sbjct: 183 LGMQQVSPQTITIPLKLLLFTLVGGWAKLLNALAMSYV 220
>gi|284007673|emb|CBA73393.1| type III secretion sytem SpaP,YscR,HrcR,EscR [Arsenophonus
nasoniae]
Length = 226
Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 117/219 (53%), Gaps = 8/219 (3%)
Query: 36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95
+ V + +I ++ P L+ TC+ +F IVF ++R +G+ VP N+V+ ++AL ++
Sbjct: 2 TDNPVSIIILLSIATLLPFLIAAGTCYLKFSIVFVMVRNAIGVQQVPSNMVLNAIALILS 61
Query: 96 FYVMSPTLDRSIEMGIQPLMNNQ------ITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
++M+P + N I + + + ++ + ++ F+
Sbjct: 62 LFIMAPLAKNFYLYSVNYQTENPHGFTDPILLDQFLDESLQDYRQYLHKYADPELVNFFV 121
Query: 150 DMAHS--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
N ++ L+ ++ +SE++ +F IGF + LPF++ID++V++I++
Sbjct: 122 AAQERVPQPENQIDNSMENGSLIPLLAAYALSEIKSAFIIGFYLYLPFVVIDLVVSSILL 181
Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
A+GMMM+ P ++S+P K++ FV +DGWSLL + L+ ++
Sbjct: 182 ALGMMMMSPITLSVPIKLVLFVAMDGWSLLSKGLISQYL 220
>gi|238918894|ref|YP_002932408.1| type III secretion system protein [Edwardsiella ictaluri 93-146]
gi|238868462|gb|ACR68173.1| type III secretion apparatus protein, YscR/HrcR family, putative
[Edwardsiella ictaluri 93-146]
Length = 215
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/213 (32%), Positives = 120/213 (56%), Gaps = 1/213 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S++ + LS+ P+L++M T F + +VF++LR +G+ +PPNL + LAL
Sbjct: 2 SLTEQPAELIALLVTLSLLPLLIVMGTSFLKLSVVFALLRNALGIQQIPPNLALYGLALI 61
Query: 94 MTFYVMSPTLDRS-IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
+T ++M+P + P + +P+ F+R +T K L F +A
Sbjct: 62 LTLFIMTPVGTAVQARLADAPAQAQTTLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQVA 121
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
S + K +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMM
Sbjct: 122 TKSWPASVREKISDNSLLLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS+PFK++ F+L+ GW ++ L+ S+
Sbjct: 182 MVSPMTISMPFKLLVFILVGGWDKILGQLLLSY 214
>gi|91782703|ref|YP_557909.1| type III secretion system protein [Burkholderia xenovorans LB400]
gi|91686657|gb|ABE29857.1| Putative type III secretion protein, YscR-like protein
[Burkholderia xenovorans LB400]
Length = 211
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 4/207 (1%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
++ +F +L + P+ + M T F +F IV ++LR+ +G+ P NLVI +AL T V
Sbjct: 7 PLQNISLFFMLGLLPLAVAMTTSFTKFSIVLTLLRSALGVQQAPSNLVISGMALAATLVV 66
Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
M+PTL + E + T +Q V P FM ++R ++ + A
Sbjct: 67 MAPTLSKI-EAALDTGDGAMPRPTELVQAVRGPLGEFMLKHSRLEERQFLVSAAKRIDPE 125
Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
+ + ++LIP+F+ISE+ FE GFL+ + FL++D++VA ++ AMGMMML P++
Sbjct: 126 HEAH---DTDLQLLIPAFLISEISSGFEAGFLLYIAFLVVDLVVANVLSAMGMMMLSPST 182
Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
+S+P K+ FV G S L+ L+ S+
Sbjct: 183 VSIPLKLFIFVSASGMSKLMHGLIVSY 209
>gi|260775667|ref|ZP_05884563.1| YYop virulence translocation protein R [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608083|gb|EEX34252.1| YYop virulence translocation protein R [Vibrio coralliilyticus ATCC
BAA-450]
Length = 216
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/215 (32%), Positives = 119/215 (55%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S+ V +S+ P++ I T F + +V I+R +G+ VPP++ + S+AL
Sbjct: 2 SLDGNPVTLALFLGAMSLIPLMFITTTAFLKIAMVLMIVRNALGVQQVPPSMAVYSIALA 61
Query: 94 MTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
TF+VM+P G + N+ I R+ P FM +N +
Sbjct: 62 ATFFVMAPVFSEIQNSVKGTESGALNEDQIVETIDRIKTPLMGFMASNVDTQISERLKST 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
A + + IL+PSF+ISEL+ F+IGFLI +PF++ID+IV+ I++A+GM
Sbjct: 122 AREMWPARMSQSMTNESFFILLPSFVISELQAGFKIGFLIYIPFVVIDLIVSNILLALGM 181
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+ P ++++P K++ FVL+DGW+ L+E+L+ +++
Sbjct: 182 QMVAPITVTVPIKILLFVLVDGWAKLLESLIYTYL 216
>gi|21492903|ref|NP_659978.1| type III secretion system protein [Rhizobium etli CFN 42]
gi|218508018|ref|ZP_03505896.1| type III secretion system protein [Rhizobium etli Brasil 5]
gi|218674847|ref|ZP_03524516.1| type III secretion system protein [Rhizobium etli GR56]
gi|21467328|gb|AAM54991.1| type III secretion system translocation protein [Rhizobium etli CFN
42]
Length = 217
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 2/207 (0%)
Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
++ +S+ P++ ++ T F + +V I+R +G+ PPNL++ ++A+ ++ +VM+
Sbjct: 9 QSLAAMAAISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMN 68
Query: 101 PTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
P L S ++ + +VA P FM + + F+ + N
Sbjct: 69 PVLQNSWQLLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWAN 128
Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
T + +L PSF++SEL R+FEIGFLI LPFL+ID V+ I++A+GM M+ PT
Sbjct: 129 APATPIASDDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTV 188
Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
+S P K++ FV IDGW L+E LV S+
Sbjct: 189 VSTPLKLLLFVSIDGWRRLLEGLVLSY 215
>gi|190894060|ref|YP_001984354.1| type III secretion system translocation protein [Rhizobium etli
CIAT 652]
gi|190699721|gb|ACE93804.1| type III secretion system translocation protein [Rhizobium etli
CIAT 652]
Length = 217
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 2/207 (0%)
Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
++ +S+ P++ ++ T F + +V I+R +G+ PPNL++ ++A+ ++ +VM+
Sbjct: 9 QSLVAMAAISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMN 68
Query: 101 PTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
P L S ++ + +VA P FM + + F+ + N
Sbjct: 69 PVLQNSWQLLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWAN 128
Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
T + +L PSF++SEL R+FEIGFLI LPFL+ID V+ I++A+GM M+ PT
Sbjct: 129 APATSIASDDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTV 188
Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
+S P K++ FV IDGW L+E LV S+
Sbjct: 189 VSTPLKLLLFVSIDGWRRLLEGLVLSY 215
>gi|186976183|gb|ACD01065.1| EpaP [Escherichia coli O157:H7 str. EC10]
Length = 221
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 57/213 (26%), Positives = 115/213 (53%), Gaps = 4/213 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++
Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61
Query: 97 YVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM P NN + ++ + ++R + + +S F +
Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLRKYSEPELVSFFEKIQKV 121
Query: 155 SHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
+ + D I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEDIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214
>gi|170766856|ref|ZP_02901309.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
albertii TW07627]
gi|170124294|gb|EDS93225.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
albertii TW07627]
gi|315617513|gb|EFU98119.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli 3431]
Length = 217
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 128/208 (61%), Gaps = 4/208 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T
Sbjct: 9 SQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTM 68
Query: 97 YVMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
++MSP + + + Q ++ + +++ P+ VF+ NT +++++ F ++A
Sbjct: 69 FIMSPIILQINDNISQEQISYTDSDFFQKVDEKILSPYRVFLEKNTDKENVAFFENVAQK 128
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
N I K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+
Sbjct: 129 KLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMV 186
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLV 242
P +IS+PFK++ F+L+ GW L E L+
Sbjct: 187 SPVTISIPFKILLFILVGGWQKLFEFLL 214
>gi|152975180|ref|YP_001374697.1| flagellar biosynthesis protein FliP [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023932|gb|ABS21702.1| Triacylglycerol lipase [Bacillus cytotoxicus NVH 391-98]
Length = 252
Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 131/244 (53%), Gaps = 5/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I ++ +A+ + + + S V+ F + T+LS++ ++++ T
Sbjct: 12 VIFVFSIIFSIIFANPAYAEPNGFIDFENGKEFT-SNSSVQLFALVTLLSLSSSIVLLFT 70
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT
Sbjct: 71 HFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKGDVWDPMTKEKIT 130
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A ++ A +M +T + DL + + + I L+PSF +++
Sbjct: 131 VSQAAEKTAPIMKEYMAKHTYKHDLKMMLKVRGEELPK----NMKDISLFTLVPSFTLTQ 186
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ F+ + G++ +V+
Sbjct: 187 IQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFIYLGGYTKIVDI 246
Query: 241 LVKS 244
+ K+
Sbjct: 247 MFKT 250
>gi|283786652|ref|YP_003366517.1| T3SS structural protein EscR [Citrobacter rodentium ICC168]
gi|15723907|gb|AAL06354.1|AF311901_6 EscR [Citrobacter rodentium]
gi|282950106|emb|CBG89741.1| T3SS structural protein EscR [Citrobacter rodentium ICC168]
Length = 217
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 68/208 (32%), Positives = 123/208 (59%), Gaps = 4/208 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + +F S+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T
Sbjct: 9 SQPIFLIVVFFFFSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTI 68
Query: 97 YVMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
++MSP + + + Q +N + ++ P+ +F+ NNT ++++ F ++A
Sbjct: 69 FIMSPIILQINDNISQEPINYTDSDFYQKVDGKIISPYRIFLENNTNKENIDFFENVAKK 128
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
N T IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+
Sbjct: 129 KLGNE--TSLKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMV 186
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLV 242
P +IS+PFK++ F+LI GW L E L+
Sbjct: 187 SPVTISIPFKILLFILIGGWQKLFEFLL 214
>gi|331653360|ref|ZP_08354365.1| flagellar biosynthetic protein FliP [Escherichia coli M718]
gi|331049458|gb|EGI21530.1| flagellar biosynthetic protein FliP [Escherichia coli M718]
Length = 145
Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats.
Identities = 64/147 (43%), Positives = 101/147 (68%), Gaps = 4/147 (2%)
Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
MSP +D+ QP +I+ A+++ A+P FM TRE DL LF +A++
Sbjct: 1 MSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG--- 57
Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
+ + + RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +
Sbjct: 58 -PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPAT 116
Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 117 IALPFKLMLFVLVDGWQLLVGSLAQSF 143
>gi|149926086|ref|ZP_01914349.1| Yop virulence translocation protein R [Limnobacter sp. MED105]
gi|149825374|gb|EDM84585.1| Yop virulence translocation protein R [Limnobacter sp. MED105]
Length = 217
Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats.
Identities = 63/216 (29%), Positives = 116/216 (53%), Gaps = 4/216 (1%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S + LS+ P++ + T F + V ILR +G+ VP N+V+ +++
Sbjct: 2 DQSINPIGLIVTIASLSVLPLVAVTATSFLKISAVLLILRNAIGVQQVPSNMVLYGISMV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE---PFWVFMRNNTREKDLSLFMD 150
MT VM L + + P ++ T ++ + PF FM N L+ F +
Sbjct: 62 MTLLVMGSILTEAGQR-FAPDGKMPVSGTEVLESINASVPPFKKFMLANVNPGYLNSFHE 120
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
A + D + + + +++P+F+ SEL +F IG + LPF+IID+ V++ +MA+G
Sbjct: 121 TAQKFQKKYDAPEVEKTDLFVVLPAFVASELAEAFRIGLYLYLPFVIIDLAVSSALMALG 180
Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MMM+ P S+++P K++ FV ++GW+ +++ LV S++
Sbjct: 181 MMMVSPMSLTVPAKIVLFVAVEGWAKVLQGLVNSYL 216
>gi|327192841|gb|EGE59767.1| type III secretion system protein [Rhizobium etli CNPAF512]
Length = 204
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 69/202 (34%), Positives = 113/202 (55%), Gaps = 2/202 (0%)
Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
+S+ P++ ++ T F + +V I+R +G+ PPNL++ ++A+ ++ +VM+P L
Sbjct: 1 MAAISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVLQN 60
Query: 106 SIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
S ++ + +VA P FM + + F+ + N T
Sbjct: 61 SWQLLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATP 120
Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
+ +L PSF++SEL R+FEIGFLI LPFL+ID V+ I++A+GM M+ PT +S P
Sbjct: 121 IASDDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPL 180
Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
K++ FV IDGW L+E LV S+
Sbjct: 181 KLLLFVSIDGWRRLLEGLVLSY 202
>gi|187919910|ref|YP_001888941.1| type III secretion system protein [Burkholderia phytofirmans PsJN]
gi|187718348|gb|ACD19571.1| Yop virulence translocation R [Burkholderia phytofirmans PsJN]
Length = 215
Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 113/208 (54%), Gaps = 6/208 (2%)
Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
+ F +L + P+++ M T F +F IV ++LR+ +G+ P N+ I +LAL T VM+
Sbjct: 9 QIIVFFFVLGLLPLIVTMTTSFTKFSIVLTLLRSAVGVQQAPGNMAISALALAATLVVMA 68
Query: 101 PTLDRSIEM---GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
PT+++ G + T Q V P FM ++R + + + A
Sbjct: 69 PTMEKIGGDLSLGERVERGQFPDVTEVYQAVRGPLGEFMMEHSRPSERAFLVTAAKRIDP 128
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
D ++ +LIP+FMISE+ FE GFL+ + FLIID+++A ++ AMGM+ML PT
Sbjct: 129 ARDAQ---ETDFSLLIPAFMISEISSGFEAGFLLYMAFLIIDLVIANVLTAMGMVMLSPT 185
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
++S P K+ V + G S L+ L+ S+
Sbjct: 186 TVSTPLKLFVLVSVSGISKLMHGLIVSY 213
>gi|15645308|ref|NP_207479.1| flagellar biosynthesis protein FliP [Helicobacter pylori 26695]
gi|4580427|gb|AAD14890.2| flagellar biosynthetic protein (fliP) [Helicobacter pylori 26695]
Length = 153
Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats.
Identities = 78/154 (50%), Positives = 115/154 (74%), Gaps = 4/154 (2%)
Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+ +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM NTREKDL+LF +
Sbjct: 1 MILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRI 60
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+IDM++++I+MAMGM
Sbjct: 61 RNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGM 116
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MMLPP ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 117 MMLPPVMISLPFKILVFILVDGFNLLTENLVASF 150
>gi|229588261|ref|YP_002870380.1| type III secretion system protein [Pseudomonas fluorescens SBW25]
gi|229360127|emb|CAY46984.1| putative hairpin type III secretion protein [Pseudomonas
fluorescens SBW25]
Length = 217
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ LS+ P+LL++ T F + +IV I R +G+ VPP++ I +AL T ++
Sbjct: 8 PLVLAVFLAALSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFI 67
Query: 99 MSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P E + ++N T +P FM N L+ ++
Sbjct: 68 MAPVGYEIAESVKALPLDLSNVQTLLQTANEAIKPLRAFMLRNIDPDVLTHLLENTARLW 127
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ + +LIP+F++S+L+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 128 PAQMAQEVQREDLILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 187
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ISLP K++ FV++ GWS L+++L S++
Sbjct: 188 MTISLPLKLLLFVMVSGWSRLLDSLFLSYL 217
>gi|15042142|gb|AAK81923.1|AF292566_7 RscR [Pseudomonas fluorescens]
Length = 217
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 117/210 (55%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ LS+ P+LL++ T F + +IV I R +G+ VPP++ I +AL T ++
Sbjct: 8 PLVLAVFLAALSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFI 67
Query: 99 MSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P E + ++N T +P FM N + L+ ++
Sbjct: 68 MAPVGYEIAESVKALPLDLSNVQTLLQTANEAIKPLRAFMLRNIDPEVLTHLLENTARLW 127
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ + +LIP+F++S+L+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 128 PAQMAQEVQREDLILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 187
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ISLP K++ FV++ GWS L+++L S++
Sbjct: 188 MTISLPLKLLLFVMVSGWSRLLDSLFLSYL 217
>gi|269138236|ref|YP_003294936.1| type three secretion apparatus protein R [Edwardsiella tarda
EIB202]
gi|61743015|gb|AAX55235.1| EsaR [Edwardsiella tarda]
gi|62199649|gb|AAX76923.1| EsaR [Edwardsiella tarda]
gi|267983896|gb|ACY83725.1| type three secretion apparatus protein R [Edwardsiella tarda
EIB202]
gi|304558279|gb|ADM40943.1| EsaR [Edwardsiella tarda FL6-60]
Length = 215
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 1/213 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S++ + LS+ P+L++M T F + +VF++LR +G+ +PPN+ + LAL
Sbjct: 2 SLTEQPAELIALLVTLSLLPLLIVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLALI 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMA 152
+T ++M+P Q T + +P+ F+R +T L F +A
Sbjct: 62 LTLFIMTPVGTAVQARLADAPAEAQTTLLARLSDNTLDPYRQFLRQHTSATQLHFFRQVA 121
Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
S + + +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMM
Sbjct: 122 TKSWPASVREQISDDSLLLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMM 181
Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
M+ P +IS+PFK++ F+L+ GW L+ L+ S+
Sbjct: 182 MVSPMTISMPFKLLVFILVGGWDKLLGQLLLSY 214
>gi|284007398|emb|CBA72807.1| type III secretion system protein Spap [Arsenophonus nasoniae]
Length = 220
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 55/211 (26%), Positives = 119/211 (56%), Gaps = 4/211 (1%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P ++ TC+ +F IVF + R +G+ +P N+V+ +AL ++F+V+
Sbjct: 5 ISLITLLAFSTLLPFIIATGTCYIKFSIVFIMARNALGLQQIPSNMVLNGIALMLSFFVL 64
Query: 100 SPTLDRSIEMGIQPLMNNQI--TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + S + + ++ + + ++ + ++ + + +S F + S
Sbjct: 65 LPIVKTSYQEFNKVNIDYKDIDSIINSVNSGLSGYKNYLIKYSDKDLVSFFDKLHQKSDD 124
Query: 158 NTD--ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
D + L+P++ +SE++ +F IGF + LPF++ID+++++I++++GMMM+
Sbjct: 125 GNDNQYENGNDSSIVSLLPAYALSEIKNAFTIGFYLYLPFVVIDLLISSILLSLGMMMMS 184
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
P +IS+P K+I F+ +DGWSLL + L+ +I
Sbjct: 185 PVTISVPIKLILFICLDGWSLLSKGLITQYI 215
>gi|163939576|ref|YP_001644460.1| flagellar biosynthesis protein FliP [Bacillus weihenstephanensis
KBAB4]
gi|163861773|gb|ABY42832.1| Triacylglycerol lipase [Bacillus weihenstephanensis KBAB4]
Length = 252
Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 67/244 (27%), Positives = 128/244 (52%), Gaps = 5/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I V +A + + + S V+ F + T+LS++ ++++ T
Sbjct: 12 VIFVFSIIFSFVFVNPAYAAPNGFINFENGKEFT-SNSSVQLFALVTLLSLSSSIVLLFT 70
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT
Sbjct: 71 HFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKIT 130
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A + A +M +T + DL + + + + L+PSF +++
Sbjct: 131 VSQAAETTAPIMKDYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQ 186
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+
Sbjct: 187 IQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDI 246
Query: 241 LVKS 244
+ K+
Sbjct: 247 MFKT 250
>gi|30019811|ref|NP_831442.1| flagellar biosynthesis protein FliP [Bacillus cereus ATCC 14579]
gi|75763363|ref|ZP_00743101.1| Flagellar biosynthetic protein fliP [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|118477199|ref|YP_894350.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis str. Al
Hakam]
gi|218235808|ref|YP_002366451.1| flagellar biosynthesis protein FliP [Bacillus cereus B4264]
gi|218896700|ref|YP_002445111.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
G9842]
gi|225863624|ref|YP_002749002.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
03BB102]
gi|296502367|ref|YP_003664067.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis BMB171]
gi|29895356|gb|AAP08643.1| Flagellar biosynthetic protein fliP [Bacillus cereus ATCC 14579]
gi|74489154|gb|EAO52632.1| Flagellar biosynthetic protein fliP [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|118416424|gb|ABK84843.1| flagellar biosynthetic protein P [Bacillus thuringiensis str. Al
Hakam]
gi|218163765|gb|ACK63757.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
B4264]
gi|218545099|gb|ACK97493.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
G9842]
gi|225787593|gb|ACO27810.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
03BB102]
gi|296323419|gb|ADH06347.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis BMB171]
gi|326939379|gb|AEA15275.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 252
Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 129/244 (52%), Gaps = 5/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I ++ +A + + + S V+ F + T+LS++ ++++ T
Sbjct: 12 VIFVFSIVFSIIFVNPAYAAPNGFINFENGKEFT-SNSSVQLFALVTLLSLSSSIVLLFT 70
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT
Sbjct: 71 HFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKIT 130
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A + A +M +T + DL + + + + L+PSF +++
Sbjct: 131 VSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQ 186
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+
Sbjct: 187 IQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDI 246
Query: 241 LVKS 244
+ K+
Sbjct: 247 MFKT 250
>gi|206970774|ref|ZP_03231726.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
AH1134]
gi|206734410|gb|EDZ51580.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
AH1134]
Length = 252
Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 129/244 (52%), Gaps = 5/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I ++ +A + + + S V+ F + T+LS++ ++++ T
Sbjct: 12 VIFVFSIVFSIIFVNPAYAAPNGFINFENGKEFT-SNSSVQLFALVTLLSLSSSIVLLFT 70
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT
Sbjct: 71 HFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKIT 130
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A + A +M +T + DL + + + + L+PSF +++
Sbjct: 131 VSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQ 186
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+
Sbjct: 187 IQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDI 246
Query: 241 LVKS 244
+ K+
Sbjct: 247 MFKT 250
>gi|162533077|ref|NP_791222.3| type III secretion protein HrcR [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968264|ref|ZP_03396408.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato
T1]
gi|28851841|gb|AAO54917.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213926902|gb|EEB60453.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato
T1]
Length = 200
Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats.
Identities = 65/200 (32%), Positives = 112/200 (56%), Gaps = 2/200 (1%)
Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
+S+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P +
Sbjct: 1 MSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEMQQ 60
Query: 109 MGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
+ N + + V EP FM NT ++ +D +
Sbjct: 61 RVHDHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEMADQASK 120
Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
+ + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++
Sbjct: 121 NDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLL 180
Query: 227 FFVLIDGWSLLVENLVKSFI 246
FV++ GWS L+++L S++
Sbjct: 181 LFVMVSGWSRLLDSLFYSYM 200
>gi|42780859|ref|NP_978106.1| flagellar biosynthesis protein FliP [Bacillus cereus ATCC 10987]
gi|49477322|ref|YP_035885.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52143691|ref|YP_083136.1| flagellar biosynthesis protein FliP [Bacillus cereus E33L]
gi|167633258|ref|ZP_02391583.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. A0442]
gi|170686220|ref|ZP_02877442.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. A0465]
gi|196033278|ref|ZP_03100690.1| putative flagellar biosynthetic protein FliP [Bacillus cereus W]
gi|196039146|ref|ZP_03106453.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
NVH0597-99]
gi|196045067|ref|ZP_03112300.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
03BB108]
gi|206974770|ref|ZP_03235685.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
H3081.97]
gi|217959249|ref|YP_002337797.1| flagellar biosynthesis protein FliP [Bacillus cereus AH187]
gi|218902880|ref|YP_002450714.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
AH820]
gi|254683268|ref|ZP_05147129.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
CNEVA-9066]
gi|254723851|ref|ZP_05185637.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. A1055]
gi|254741030|ref|ZP_05198718.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Kruger
B]
gi|300117310|ref|ZP_07055100.1| flagellar biosynthesis protein FliP [Bacillus cereus SJ1]
gi|42736779|gb|AAS40714.1| flagellar biosynthetic protein FliP, putative [Bacillus cereus ATCC
10987]
gi|49328878|gb|AAT59524.1| flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51977160|gb|AAU18710.1| flagellar biosynthetic protein P [Bacillus cereus E33L]
gi|167531296|gb|EDR93974.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. A0442]
gi|170669917|gb|EDT20658.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. A0465]
gi|195993712|gb|EDX57668.1| putative flagellar biosynthetic protein FliP [Bacillus cereus W]
gi|196024069|gb|EDX62743.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
03BB108]
gi|196030291|gb|EDX68891.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
NVH0597-99]
gi|206746789|gb|EDZ58181.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
H3081.97]
gi|217065617|gb|ACJ79867.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
AH187]
gi|218539563|gb|ACK91961.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
AH820]
gi|298725145|gb|EFI65797.1| flagellar biosynthesis protein FliP [Bacillus cereus SJ1]
gi|324325784|gb|ADY21044.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 252
Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 129/244 (52%), Gaps = 5/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I ++ +A + + + S V+ F + T+LS++ ++++ T
Sbjct: 12 VIFVFSIVFSIIFVNPAYAAQNGFINFENGKEFT-SNSSVQLFALVTLLSLSSSIVLLFT 70
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT
Sbjct: 71 HFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKIT 130
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A + A +M +T + DL + + + + L+PSF +++
Sbjct: 131 VSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQ 186
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+
Sbjct: 187 IQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDI 246
Query: 241 LVKS 244
+ K+
Sbjct: 247 MFKT 250
>gi|301381807|ref|ZP_07230225.1| type III secretion system protein [Pseudomonas syringae pv. tomato
Max13]
gi|302061998|ref|ZP_07253539.1| type III secretion system protein [Pseudomonas syringae pv. tomato
K40]
gi|302135080|ref|ZP_07261070.1| type III secretion system protein [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|330872918|gb|EGH07067.1| type III secretion system protein YscR [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963055|gb|EGH63315.1| type III secretion system protein YscR [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331015103|gb|EGH95159.1| type III secretion system protein YscR [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 217
Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats.
Identities = 65/212 (30%), Positives = 113/212 (53%), Gaps = 2/212 (0%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ +S+ P LLI+ T F + + I R +G+ VPPN+ + +AL T
Sbjct: 6 ANPLLLALFLGAMSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATM 65
Query: 97 YVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM+P + + N + + V EP FM NT ++ +D
Sbjct: 66 FVMAPVAHEMQQRVHDHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQR 125
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
+ + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+
Sbjct: 126 MWPKEMADQASKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
P ++SLP K++ FV++ GWS L+++L S++
Sbjct: 186 SPMTLSLPLKLLLFVMVSGWSRLLDSLFYSYM 217
>gi|47565435|ref|ZP_00236476.1| flagellar biosynthetic protein fliP [Bacillus cereus G9241]
gi|47557425|gb|EAL15752.1| flagellar biosynthetic protein fliP [Bacillus cereus G9241]
Length = 252
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 129/244 (52%), Gaps = 5/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I ++ +A + + + S V+ F + T+LS++ ++++ T
Sbjct: 12 VIFVFSIVFSIIFVNPAYAAQNGFINFENGKEFT-SNSSVQLFALVTLLSLSSSIVLLFT 70
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT
Sbjct: 71 HFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKTDVWDPMTKEKIT 130
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A + A +M +T + DL + + + + L+PSF +++
Sbjct: 131 VSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQ 186
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+
Sbjct: 187 IQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDI 246
Query: 241 LVKS 244
+ K+
Sbjct: 247 MFKT 250
>gi|51103054|gb|AAT96200.1| HrcR [Pseudomonas viridiflava]
Length = 217
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 70/212 (33%), Positives = 116/212 (54%), Gaps = 2/212 (0%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
T + LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T
Sbjct: 6 TNPIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATM 65
Query: 97 YVMSPTLDRSIEMGI-QPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM+P + PL + A ++ V EP FM NT ++ ++
Sbjct: 66 FVMAPVAHDIQQRVHDHPLELGSADKLQASLRTVIEPLQRFMTRNTDPDVVAHLLENTQR 125
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
+ + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+
Sbjct: 126 MWPKEMADQATKDDLLLAIPAFVMSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
P +ISLP K++ FVL+ GWS L+++L S++
Sbjct: 186 SPMTISLPLKLLLFVLVSGWSRLLDSLFYSYM 217
>gi|301053304|ref|YP_003791515.1| flagellar biosynthesis protein [Bacillus anthracis CI]
gi|300375473|gb|ADK04377.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis
str. CI]
Length = 252
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 129/244 (52%), Gaps = 5/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I ++ +A + + + S V+ F + T+LS++ ++++ T
Sbjct: 12 VIFVFSIVFSIIFVNPAYAAQNGFINFENGKEFT-SNSSVQLFALVTLLSLSSSIVLLFT 70
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT
Sbjct: 71 HFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKIT 130
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A + A +M +T + DL + + + + L+PSF +++
Sbjct: 131 VSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQ 186
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+
Sbjct: 187 IQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDI 246
Query: 241 LVKS 244
+ K+
Sbjct: 247 MFKT 250
>gi|30261770|ref|NP_844147.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Ames]
gi|47527003|ref|YP_018352.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184604|ref|YP_027856.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
Sterne]
gi|65319047|ref|ZP_00392006.1| COG1338: Flagellar biosynthesis pathway, component FliP [Bacillus
anthracis str. A2012]
gi|165869274|ref|ZP_02213933.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. A0488]
gi|167638785|ref|ZP_02397060.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. A0193]
gi|170706438|ref|ZP_02896898.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. A0389]
gi|177650630|ref|ZP_02933597.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. A0174]
gi|190566255|ref|ZP_03019173.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
Tsiankovskii-I]
gi|227815461|ref|YP_002815470.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. CDC 684]
gi|229600042|ref|YP_002866159.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. A0248]
gi|254734621|ref|ZP_05192333.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
Western North America USA6153]
gi|254755273|ref|ZP_05207307.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
Vollum]
gi|254759809|ref|ZP_05211833.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
Australia 94]
gi|30255998|gb|AAP25633.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. Ames]
gi|47502151|gb|AAT30827.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. 'Ames Ancestor']
gi|49178531|gb|AAT53907.1| flagellar biosynthetic protein FliP, putative [Bacillus anthracis
str. Sterne]
gi|164714714|gb|EDR20232.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. A0488]
gi|167513249|gb|EDR88620.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. A0193]
gi|170128536|gb|EDS97403.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. A0389]
gi|172083774|gb|EDT68834.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. A0174]
gi|190562390|gb|EDV16357.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
Tsiankovskii-I]
gi|227003763|gb|ACP13506.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. CDC 684]
gi|229264450|gb|ACQ46087.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
str. A0248]
Length = 252
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 129/244 (52%), Gaps = 5/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I ++ +A + + + S V+ F + T+LS++ ++++ T
Sbjct: 12 VIFVFSIVFSIIFVNPAYAAQNGFINFENGKEFT-SNSSVQLFALVTLLSLSSSIVLLFT 70
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT
Sbjct: 71 HFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKIT 130
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A + A +M +T + DL + + + + L+PSF +++
Sbjct: 131 VSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQ 186
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+
Sbjct: 187 IQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILIFVYLGGYTKIVDI 246
Query: 241 LVKS 244
+ K+
Sbjct: 247 MFKT 250
>gi|51102999|gb|AAT96146.1| HrcR [Pseudomonas viridiflava]
Length = 217
Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats.
Identities = 68/212 (32%), Positives = 116/212 (54%), Gaps = 2/212 (0%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
T + LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T
Sbjct: 6 TNPIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATM 65
Query: 97 YVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM+P + + + T+++ V EP FM NT ++ ++
Sbjct: 66 FVMAPVAHDIQQRVHDHPLELGSADKLQTSLRTVIEPLQRFMTRNTDPDVVAHLLENTQR 125
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
+ + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+
Sbjct: 126 MWPKEMADQATKDDLLLAIPAFVMSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
P +ISLP K++ FVL+ GWS L+++L S++
Sbjct: 186 SPMTISLPLKLLLFVLVSGWSRLLDSLFYSYM 217
>gi|323166471|gb|EFZ52235.1| surface presentation of antigens protein spaP [Shigella sonnei 53G]
Length = 181
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 106/178 (59%), Gaps = 3/178 (1%)
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ-PLMNNQITETTAI-QRV 128
++R +G+ VP N+ + +AL M +VM P ++ E + P + I++
Sbjct: 1 MVRNALGLQQVPSNMTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSG 60
Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
+ +++ +T + L+ F + + + +N+ L+P++ +SE++ +F+IG
Sbjct: 61 LMEYKQYLKKHTDLE-LARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIG 119
Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
F + LPF+++D+++++I++A+GMMM+ P +IS+P K++ FV +DGW +L + L++ +I
Sbjct: 120 FYLYLPFVVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYI 177
>gi|11276516|gb|AAG33884.1| HrcR [Pseudomonas syringae pv. tomato]
Length = 208
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 2/207 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
+S+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P
Sbjct: 2 LALFLGAMSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP 61
Query: 102 TLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + N + + V EP FM NT ++ +D
Sbjct: 62 VAHEMQQRVHDHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKE 121
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++
Sbjct: 122 MADQASKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 181
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
SLP K++ FV++ GWS L+++L S++
Sbjct: 182 SLPLKLLLFVMVSGWSRLLDSLFYSYM 208
>gi|161611342|ref|YP_273544.2| type III secretion system protein [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 215
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/210 (30%), Positives = 117/210 (55%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +V
Sbjct: 6 PIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFV 65
Query: 99 MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P + + + + ++++ V EP FM NT ++ ++
Sbjct: 66 MAPVAHEIQQRVHEHPLELGSADKLQSSLKTVIEPLQRFMTRNTDPDVVAHLLENTQRMW 125
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 126 PKEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 185
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++SLP K++ FVL+ GWS L+++L S++
Sbjct: 186 MTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 215
>gi|285018283|ref|YP_003375994.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
GPE PC73]
gi|283473501|emb|CBA16004.1| probable xanthomonas secretion apparatus protein [Xanthomonas
albilineans]
Length = 231
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 61/219 (27%), Positives = 119/219 (54%), Gaps = 12/219 (5%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++++ P L TCF +F +VF +LR +GM VP N+V+ S+AL + +VM
Sbjct: 7 LSLIALIAVMALIPFLFASGTCFLKFSVVFVLLRNAIGMQQVPSNMVLNSIALMLAAFVM 66
Query: 100 SPTLDRSIEMGIQPLMNNQITET-TAIQRVAEPFWVFMRNNTREKDLSLFMDM------- 151
P + + + + E + V P+ ++ ++ + F +
Sbjct: 67 QPVITSTFHAFQETDQVTSMDEVGPYLTTVLTPYRQYLAKYADKELVEFFQRVPSTVQNT 126
Query: 152 ----AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
+ + I + L+P++ ++ELR +F IGF + LPF++ID+IV+ +++
Sbjct: 127 PTTPGQGTANQSAIHQVQQPSLYALLPAYGLTELRDAFRIGFYLYLPFVVIDLIVSNVLL 186
Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
A+GMMM+ P +IS+P K+I FV +DGW+L+ ++L++ ++
Sbjct: 187 ALGMMMMSPVTISMPIKLILFVALDGWTLVSKDLMEPYM 225
>gi|307944366|ref|ZP_07659707.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium
sp. TrichSKD4]
gi|307772712|gb|EFO31932.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium
sp. TrichSKD4]
Length = 212
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 62/208 (29%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
+ G+ + SI P ++ T F + + ILR +G+ PPN+ + ++ L + ++ +
Sbjct: 6 QFLGMLILASIVPFFIVGTTAFIKIATILFILRNAIGLQQTPPNMALYAITLALVAFIQA 65
Query: 101 PTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
P + + + N+ + A + +P FM + D + F+D + ++
Sbjct: 66 PVFVATYDILAALPIDFNSPASLQDAFVKGLQPISDFMNKHVTLADKTFFLDAGNELYKG 125
Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
+ + ++ + +L+P+FM +EL + + G LI LPFL ID++V I+ A+GM M+ P
Sbjct: 126 SRLKVTEN-SFLVLLPAFMNAELNAALQAGVLIFLPFLAIDIVVTNILSALGMSMVSPMV 184
Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
ISLPFKV+ FV DGWS L +L+ S+I
Sbjct: 185 ISLPFKVLLFVAADGWSKLTHSLILSYI 212
>gi|222095389|ref|YP_002529449.1| flagellar biosynthesis protein flip [Bacillus cereus Q1]
gi|221239447|gb|ACM12157.1| flagellar biosynthetic protein FliP [Bacillus cereus Q1]
Length = 252
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/244 (26%), Positives = 129/244 (52%), Gaps = 5/244 (2%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+I ++ +A + + + S V+ F + T+LS++ ++++ T
Sbjct: 12 VIFVFSIVFSIIFVNPAYAAQNGFINFENGKEFT-SNSSVQLFALVTLLSLSSSIVLLFT 70
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT
Sbjct: 71 HFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKIT 130
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A + A +M +T + DL + + + + L+PSF +++
Sbjct: 131 VSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQ 186
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
+++ G I L F+ ID+I++T++M +GM+M+PP +SLPFK++ FV + G++ +V+
Sbjct: 187 IQKGLLTGMFIYLAFVFIDLIISTLLMYLGMLMVPPMILSLPFKILVFVYLGGYTKIVDI 246
Query: 241 LVKS 244
+ K+
Sbjct: 247 MFKT 250
>gi|330975864|gb|EGH75930.1| type III secretion system protein YscR [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 217
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 117/210 (55%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +V
Sbjct: 8 PIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFV 67
Query: 99 MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P + + + N ++++ V EP FM NT ++ ++
Sbjct: 68 MAPVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMW 127
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 128 PKEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 187
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++SLP K++ FVL+ GWS L+++L S++
Sbjct: 188 MTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217
>gi|2494569|sp|Q60236|HRPW_PSESY RecName: Full=Harpin secretion protein hrpW
gi|818891|gb|AAB05075.1| HrpW [Pseudomonas syringae pv. syringae]
gi|148562540|gb|ABQ88359.1| HrcR [Pseudomonas syringae pv. syringae]
Length = 208
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/207 (31%), Positives = 116/207 (56%), Gaps = 2/207 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P
Sbjct: 2 LALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP 61
Query: 102 TLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + + N ++++ V EP FM NT ++ ++
Sbjct: 62 VAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKE 121
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++
Sbjct: 122 MADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 181
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
SLP K++ FVL+ GWS L+++L S++
Sbjct: 182 SLPLKLLLFVLVSGWSRLLDSLFYSYM 208
>gi|9663072|emb|CAC01101.1| FliP flagellar protein [Helicobacter pylori]
Length = 160
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 68/162 (41%), Positives = 107/162 (66%), Gaps = 4/162 (2%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
+ + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF+
Sbjct: 3 TTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFF 62
Query: 98 VMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+M P+L ++ + GI+P M+ +I+ T A ++ PF FM NTREKDL+LF + + +
Sbjct: 63 IMEPSLKKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNP 122
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
T D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 123 KT----PDDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160
>gi|9663064|emb|CAC01097.1| FliP flagellar protein [Helicobacter pylori]
gi|9663070|emb|CAC01100.1| FliP flagellar protein [Helicobacter pylori]
gi|9663082|emb|CAC01104.1| FliP flagellar protein [Helicobacter pylori]
gi|9663108|emb|CAC01117.1| FliP flagellar protein [Helicobacter pylori]
Length = 160
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 108/162 (66%), Gaps = 4/162 (2%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
+ + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF+
Sbjct: 3 TTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFF 62
Query: 98 VMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+M P+L ++ + GI+P M+ +I+ T A ++ A PF FM NTREKDL+LF + + +
Sbjct: 63 IMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNP 122
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
T D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 123 KT----PDDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160
>gi|289623683|ref|ZP_06456637.1| type III secretion system protein [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289647643|ref|ZP_06478986.1| type III secretion system protein [Pseudomonas syringae pv. aesculi
str. 2250]
gi|298485949|ref|ZP_07004024.1| type III secretion system inner membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298159535|gb|EFI00581.1| type III secretion system inner membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|320322955|gb|EFW79045.1| type III secretion system protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329922|gb|EFW85910.1| type III secretion system protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330871287|gb|EGH05996.1| type III secretion system protein YscR [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330874622|gb|EGH08771.1| type III secretion system protein YscR [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 217
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 65/210 (30%), Positives = 117/210 (55%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +V
Sbjct: 8 PIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFV 67
Query: 99 MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P + + + + ++++ V EP FM NT ++ ++
Sbjct: 68 MAPVAHEIQQRVHEHPLELGSADKLQSSLKTVIEPLQRFMTRNTDPDVVAHLLENTQRMW 127
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 128 PKEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 187
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++SLP K++ FVL+ GWS L+++L S++
Sbjct: 188 MTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217
>gi|3282781|gb|AAC25069.1| HrcR [Pseudomonas syringae pv. phaseolicola]
gi|42562002|gb|AAS20444.1| HrcR [Pseudomonas syringae pv. phaseolicola]
gi|71555436|gb|AAZ34647.1| type III secretion component protein HrcR [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 208
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 65/207 (31%), Positives = 116/207 (56%), Gaps = 2/207 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P
Sbjct: 2 LALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP 61
Query: 102 TLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + + + ++++ V EP FM NT ++ ++
Sbjct: 62 VAHEIQQRVHEHPLELGSADKLQSSLKTVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKE 121
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++
Sbjct: 122 MADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 181
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
SLP K++ FVL+ GWS L+++L S++
Sbjct: 182 SLPLKLLLFVLVSGWSRLLDSLFYSYM 208
>gi|9663100|emb|CAC01113.1| FliP flagellar protein [Helicobacter pylori]
Length = 160
Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 107/162 (66%), Gaps = 4/162 (2%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
+ + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF+
Sbjct: 3 TTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFF 62
Query: 98 VMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+M P L ++ + GI+P M+ +I+ T A ++ A PF FM NTREKDL+LF + + +
Sbjct: 63 IMEPNLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNP 122
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
T D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 123 KT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160
>gi|66044459|ref|YP_234300.1| type III secretion system protein [Pseudomonas syringae pv.
syringae B728a]
gi|63255166|gb|AAY36262.1| type III secretion protein HrcR [Pseudomonas syringae pv. syringae
B728a]
gi|330969104|gb|EGH69170.1| type III secretion system protein YscR [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 217
Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +V
Sbjct: 8 PIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFV 67
Query: 99 MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P + + + N ++++ V EP FM NT ++ ++
Sbjct: 68 MAPVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMW 127
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 128 PKEMADQASKDDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 187
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++SLP K++ FVL+ GWS L+++L S++
Sbjct: 188 MTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217
>gi|9663102|emb|CAC01114.1| FliP flagellar protein [Helicobacter pylori]
Length = 160
Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 68/162 (41%), Positives = 107/162 (66%), Gaps = 4/162 (2%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
+ + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF+
Sbjct: 3 TTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFF 62
Query: 98 VMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+M P+L ++ + GI+P M+ +I+ T A ++ PF FM NTREKDL+LF + + +
Sbjct: 63 IMEPSLKKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNP 122
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
T D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 123 KT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160
>gi|289677999|ref|ZP_06498889.1| type III secretion system protein [Pseudomonas syringae pv.
syringae FF5]
gi|330901781|gb|EGH33200.1| type III secretion system protein YscR [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 217
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +V
Sbjct: 8 PIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFV 67
Query: 99 MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P + + + N ++++ V EP FM NT ++ ++
Sbjct: 68 MAPVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMW 127
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 128 PKEMADQASKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 187
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++SLP K++ FVL+ GWS L+++L S++
Sbjct: 188 MTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217
>gi|251789493|ref|YP_003004214.1| type III secretion system protein [Dickeya zeae Ech1591]
gi|247538114|gb|ACT06735.1| Yop virulence translocation R [Dickeya zeae Ech1591]
Length = 217
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 68/215 (31%), Positives = 120/215 (55%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S S V LS+ P+ +I+ TCF + +V I R +G+ VPPN+ + +AL
Sbjct: 3 SGSFDPVMFALFLGTLSLIPLSMIVCTCFLKISMVLMITRNAIGVQQVPPNMALYGIALA 62
Query: 94 MTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
T +VM+P + ++ N +++ R EP FM NT L+ +
Sbjct: 63 ATVFVMAPVFSDIKQRFQDAPVDFSNLDALESSVTRGIEPLQKFMSRNTDPDILTHLHEN 122
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ K +++P++++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLRMWPAAMSEKITTQSILLIVPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+ PT++SLP K++ FVL++GW+ L++ L S++
Sbjct: 183 QMVAPTTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217
>gi|9663066|emb|CAC01098.1| FliP flagellar protein [Helicobacter pylori]
gi|9663068|emb|CAC01099.1| FliP flagellar protein [Helicobacter pylori]
gi|9663074|emb|CAC01102.1| FliP flagellar protein [Helicobacter pylori]
gi|9663076|emb|CAC01103.1| FliP flagellar protein [Helicobacter pylori]
gi|9663084|emb|CAC01105.1| FliP flagellar protein [Helicobacter pylori]
gi|9663086|emb|CAC01106.1| FliP flagellar protein [Helicobacter pylori]
gi|9663088|emb|CAC01107.1| FliP flagellar protein [Helicobacter pylori]
gi|9663092|emb|CAC01109.1| FliP flagellar protein [Helicobacter pylori]
gi|9663094|emb|CAC01110.1| FliP flagellar protein [Helicobacter pylori]
gi|9663096|emb|CAC01111.1| FliP flagellar protein [Helicobacter pylori]
gi|9663104|emb|CAC01115.1| FliP flagellar protein [Helicobacter pylori]
gi|9663106|emb|CAC01116.1| FliP flagellar protein [Helicobacter pylori]
Length = 160
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 108/162 (66%), Gaps = 4/162 (2%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
+ + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF+
Sbjct: 3 TTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFF 62
Query: 98 VMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+M P+L ++ + GI+P M+ +I+ T A ++ A PF FM NTREKDL+LF + + +
Sbjct: 63 IMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNP 122
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
T D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 123 KT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160
>gi|28628132|gb|AAO34616.1| HrcR [Erwinia chrysanthemi]
Length = 217
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 67/215 (31%), Positives = 120/215 (55%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S S V LS+ P+ +I+ TCF + +V + R +G+ VPPN+ + +AL
Sbjct: 3 SGSFDPVMFALFLGTLSLIPLSMIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGIALA 62
Query: 94 MTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
T +VM+P + ++ N +++ R EP FM NT L+ +
Sbjct: 63 ATVFVMAPVFSDIKQRFQDAPVDFSNLDALESSVTRGIEPLQKFMSRNTDPDILTHLHEN 122
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ K +++P++++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLRMWPAAMSEKITTQSILLIVPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+ PT++SLP K++ FVL++GW+ L++ L S++
Sbjct: 183 QMVAPTTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217
>gi|330937035|gb|EGH41123.1| type III secretion system protein YscR [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 217
Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 115/210 (54%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +V
Sbjct: 8 PIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFV 67
Query: 99 MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P + + + N ++++ V EP FM NT ++ ++
Sbjct: 68 MAPVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMW 127
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 128 PKEMADQASKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 187
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++SLP K++ FVL+ GWS L++ L S++
Sbjct: 188 MTLSLPLKLLLFVLVSGWSRLLDRLFYSYM 217
>gi|237800001|ref|ZP_04588462.1| type III secretion system protein YscR [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331022856|gb|EGI02913.1| type III secretion system protein YscR [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 217
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 65/212 (30%), Positives = 114/212 (53%), Gaps = 2/212 (0%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ +S+ P LLI+ T F + + I R +G+ VPPN+ + +AL T
Sbjct: 6 ANPLLLALFLGAMSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATL 65
Query: 97 YVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
+VM+P + + + N + + V EP FM NT ++ ++
Sbjct: 66 FVMAPVAHEMQQRVHEHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLENTQR 125
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
+ + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+
Sbjct: 126 MWPKEMADQASKEDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
P ++SLP K++ FVL+ GWS L+++L S++
Sbjct: 186 SPMTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217
>gi|146305087|ref|YP_001185552.1| type III secretion system protein [Pseudomonas mendocina ymp]
gi|145573288|gb|ABP82820.1| Yop virulence translocation R [Pseudomonas mendocina ymp]
Length = 217
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ LS+ P LLI+ T F + + I R +G+ VPPN+ I +AL T +V
Sbjct: 8 PIMLALFLGALSLIPFLLIVCTAFLKIAMTLMITRNAIGVQQVPPNMAIYGIALAATMFV 67
Query: 99 MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P ++ + + + V EP FM NNT + ++
Sbjct: 68 MAPVAYEIQNRLSDNPLDLSSTDSLQASAGNVVEPLQDFMVNNTDPDIATHLLENTQRMW 127
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
K + + IP+F++SEL+ +F+IGFLI +PF++ID+I++ +++A+GM M+ P
Sbjct: 128 PREMSEKASKSDLLLAIPAFVLSELQAAFQIGFLIYIPFIVIDLIISNLLLALGMQMVSP 187
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ISLP K++ FVL+DGW+ L+ +L S++
Sbjct: 188 MTISLPLKLLLFVLVDGWTRLLNSLFYSYM 217
>gi|9663098|emb|CAC01112.1| FliP flagellar protein [Helicobacter pylori]
Length = 160
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 68/162 (41%), Positives = 107/162 (66%), Gaps = 4/162 (2%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
+ + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF+
Sbjct: 3 TTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFF 62
Query: 98 VMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+M P+L ++ + GI+P M+ +I+ A ++ A PF FM NTREKDL+LF + + +
Sbjct: 63 IMEPSLKKAYDTGIKPYMDKKISYIEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNP 122
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
T D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 123 KT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160
>gi|330957488|gb|EGH57748.1| type III secretion system protein YscR [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 217
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 65/210 (30%), Positives = 115/210 (54%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +V
Sbjct: 8 PIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFV 67
Query: 99 MSPTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P + + ++++ V EP FM NT ++ ++
Sbjct: 68 MAPVAHDIQQRVHDHPLEMSSADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMW 127
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 128 PKEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 187
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++SLP K++ FVL+ GWS L+++L S++
Sbjct: 188 MTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217
>gi|238577787|gb|ACR46698.1| HrcR [Pseudomonas syringae pv. tabaci]
Length = 208
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 65/207 (31%), Positives = 114/207 (55%), Gaps = 2/207 (0%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P
Sbjct: 2 LALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP 61
Query: 102 TLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
+ + ++++ V EP FM NT ++ ++
Sbjct: 62 VAHDIQQRVHDHPLEMSSADKLQSSLKLVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKE 121
Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
+ + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++
Sbjct: 122 MADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 181
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
SLP K++ FVL+ GWS L+++L S++
Sbjct: 182 SLPLKLLLFVLVSGWSRLLDSLFYSYM 208
>gi|257487234|ref|ZP_05641275.1| type III secretion system protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|330894462|gb|EGH27123.1| type III secretion system protein YscR [Pseudomonas syringae pv.
mori str. 301020]
gi|330984964|gb|EGH83067.1| type III secretion system protein YscR [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009152|gb|EGH89208.1| type III secretion system protein YscR [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 217
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 65/210 (30%), Positives = 115/210 (54%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +V
Sbjct: 8 PIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFV 67
Query: 99 MSPTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P + + ++++ V EP FM NT ++ ++
Sbjct: 68 MAPVAHDIQQRVHDHPLEMSSADKLQSSLKLVIEPLQRFMTRNTDPDVVAHLLENTQRMW 127
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 128 PKEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 187
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++SLP K++ FVL+ GWS L+++L S++
Sbjct: 188 MTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217
>gi|8996030|gb|AAF82329.1|AF005744_8 YsaR [Yersinia enterocolitica]
Length = 224
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 54/211 (25%), Positives = 106/211 (50%), Gaps = 4/211 (1%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ I S+ P ++ TC+ I + G + L + +AL ++ +VM
Sbjct: 9 IPLLAIVAFSSLLPFVIAAGTCYLENINRANYGAQCDGGTTGTFRLALNGIALLLSLFVM 68
Query: 100 SPTLDRSIEMGI--QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
P + + +N + I + +++ + + L+ F +
Sbjct: 69 MPVIQDVNHYMRTEKVDFSNVDSVDKFIDGGLGSYTAYLKKYSDPELLNFFESLQQGRSE 128
Query: 158 NTDITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
+ + D L+P++ +SE++ +FEIGF I LPF++ID+I+++I++A+GMMM+
Sbjct: 129 EESMAEADTREPALFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLIISSILLALGMMMMS 188
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
P +IS+P K+I FV IDGW+L+ + L+ ++
Sbjct: 189 PVTISVPVKLILFVAIDGWALISKGLIMQYM 219
>gi|227114168|ref|ZP_03827824.1| type III secretion system protein [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
gi|253688597|ref|YP_003017787.1| Yop virulence translocation R [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251755175|gb|ACT13251.1| Yop virulence translocation R [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 217
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 70/215 (32%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S + + LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL
Sbjct: 3 SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62
Query: 94 MTFYVMSPTLDRSIEMGIQ-PLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDM 151
T +VM+P + + PL IT A + EP FM N L+ +
Sbjct: 63 ATLFVMAPVFQDISKRVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHEN 122
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ + K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+ P ++SLP K++ FVL++GW+ L++ L S++
Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217
>gi|307131230|ref|YP_003883246.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
gi|306528759|gb|ADM98689.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
Length = 217
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 66/215 (30%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S S V LS+ P+++I+ TCF + +V I R +G+ VPPN+ + +AL
Sbjct: 3 SGSFDPVMFALFLGALSLIPLMMIVCTCFLKVSMVLMITRNAIGVQQVPPNMALYGIALA 62
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
T +VM+P + ++ +++ + EP FM NT L+ +
Sbjct: 63 ATLFVMAPVFSDIKQRFQDAPVDFSSLDALESSVTKGIEPLQKFMSRNTDPDILTHLHEN 122
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ + K +++P++++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLRMWPASMSEKITTQNILLVLPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+ PT++SLP K++ FVL++GW+ L++ L S++
Sbjct: 183 QMVAPTTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217
>gi|34500877|gb|AAQ73905.1| HrcR [Pectobacterium carotovorum subsp. carotovorum]
Length = 217
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 66/215 (30%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S + + LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL
Sbjct: 3 SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQI--TETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
T +VM+P + + ++ + T++ EP FM N L+ +
Sbjct: 63 ATLFVMAPVFQDITKRVQEKPLDMTDITSLQTSVTYGLEPLQTFMSRNVDPDILTHLHEN 122
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ + K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+ P ++SLP K++ FVL++GW+ L++ L S++
Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217
>gi|50121007|ref|YP_050174.1| type III secretion system protein [Pectobacterium atrosepticum
SCRI1043]
gi|42560424|gb|AAS20384.1| HrcR [Pectobacterium atrosepticum]
gi|49611533|emb|CAG74981.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
Length = 217
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 70/215 (32%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S + + LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL
Sbjct: 3 SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62
Query: 94 MTFYVMSPTLDRSIEMGIQ-PLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDM 151
T +VM+P + + PL IT A + EP FM N L+ +
Sbjct: 63 ATMFVMAPVFQDISKRVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHEN 122
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ + K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+ P ++SLP K++ FVL++GW+ L++ L S++
Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217
>gi|2494567|sp|Q47856|HRCR_PANAY RecName: Full=Harpin secretion protein hrcR
gi|1483322|emb|CAA68098.1| HrcR protein [Pantoea agglomerans]
Length = 217
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 66/203 (32%), Positives = 112/203 (55%), Gaps = 2/203 (0%)
Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
LS+ PIL+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+P
Sbjct: 13 LFLGALSLIPILMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72
Query: 104 DRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
++ + Q + N T+I P FM +NT L + +
Sbjct: 73 NQMQQQFSQAPADMSNMDNLKTSITNGVAPLQKFMTHNTDPDILIHLQENSVKMWPKPMS 132
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++ +GM M+ P ++SL
Sbjct: 133 DDVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLTLGMQMVTPMTLSL 192
Query: 222 PFKVIFFVLIDGWSLLVENLVKS 244
P K++ +LI+GW+ L++ L S
Sbjct: 193 PLKMLLLILINGWTRLLDGLFYS 215
>gi|82795278|gb|ABB91647.1| type III secretion protein HrcR [Pseudomonas syringae pv. tagetis]
Length = 217
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 65/197 (32%), Positives = 109/197 (55%), Gaps = 2/197 (1%)
Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P +
Sbjct: 21 IPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVAHEMQQRVH 80
Query: 112 QPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
+ N + + V EP FM NT ++ +D + +
Sbjct: 81 DHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEMADQASKEDL 140
Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
+ IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV
Sbjct: 141 LLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLLLFV 200
Query: 230 LIDGWSLLVENLVKSFI 246
L+ GWS L+++L S++
Sbjct: 201 LVSGWSRLLDSLFYSYM 217
>gi|271500421|ref|YP_003333446.1| Yop virulence translocation R [Dickeya dadantii Ech586]
gi|270343976|gb|ACZ76741.1| Yop virulence translocation R [Dickeya dadantii Ech586]
Length = 217
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 64/210 (30%), Positives = 116/210 (55%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
V LS+ P+ +I+ TCF + +V + R +G+ VPPN+ + +AL T +V
Sbjct: 8 PVMFALFLGSLSLIPLAMIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGVALAATLFV 67
Query: 99 MSPTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P ++ +++ R EP FM NT L+ + +
Sbjct: 68 MAPVFSDIKLRFQDAPVDFSSLDALESSVTRGIEPLQKFMSRNTDPDILTHLHENSLRMW 127
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
K +++P++++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 128 PAAMTEKITTQNILLILPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAP 187
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
T++SLP K++ FVL++GW+ L++ L S++
Sbjct: 188 TTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217
>gi|227328491|ref|ZP_03832515.1| type III secretion system protein [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 217
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 70/215 (32%), Positives = 122/215 (56%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S + + LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL
Sbjct: 3 SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62
Query: 94 MTFYVMSPTLDRSIEMGIQ-PLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDM 151
T +VM+P + + PL IT A + EP +FM N L+ +
Sbjct: 63 ATLFVMAPVFQDISKRVQEKPLDMTDITSLQASVTYGLEPLQMFMSRNVDPDILTHLHEN 122
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ + K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+ P ++SLP K++ FVL++GW+ L++ L S++
Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217
>gi|46203617|ref|ZP_00051259.2| COG1338: Flagellar biosynthesis pathway, component FliP
[Magnetospirillum magnetotacticum MS-1]
Length = 210
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 6/186 (3%)
Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
L L + A+S D+ + ++ + T+L++AP +L+M T F R ++V
Sbjct: 19 LLLSSAGCALAQSVTLDL----GAGGTTERALQLVALITVLALAPSVLVMATAFTRIVVV 74
Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
SILR+ +G + PPN VI+SLALF+T +VM+PT + GI+PLM QI+++ A +R
Sbjct: 75 LSILRSALGTQTAPPNAVIVSLALFLTAFVMAPTAREAYRAGIEPLMAGQISQSQAFERA 134
Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
+ PF + + + +P+FMI LRR+FEIG
Sbjct: 135 SGPFQDLHGAQRPREGSETVPRHGAPARPGRIQEAVGPGDQS--LPAFMIFGLRRAFEIG 192
Query: 189 FLIILP 194
FL+ +P
Sbjct: 193 FLLFIP 198
>gi|330950824|gb|EGH51084.1| type III secretion system protein YscR [Pseudomonas syringae Cit 7]
Length = 218
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 66/211 (31%), Positives = 117/211 (55%), Gaps = 3/211 (1%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +V
Sbjct: 8 PIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFV 67
Query: 99 MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P + + + N ++++ V EP FM NT ++ ++
Sbjct: 68 MAPVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMW 127
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 128 PKEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 187
Query: 217 TSISLPFKVIFFVLIDGWSLLVE-NLVKSFI 246
++SLP K++ FVL+ GWS L++ +L S++
Sbjct: 188 MTLSLPLKLLLFVLVSGWSRLLDPSLFYSYM 218
>gi|167030914|gb|ABZ05782.1| HrcR [Pectobacterium carotovorum subsp. carotovorum]
Length = 217
Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats.
Identities = 70/215 (32%), Positives = 122/215 (56%), Gaps = 2/215 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S + + LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL
Sbjct: 3 SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62
Query: 94 MTFYVMSPTLDRSIEMGIQ-PLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDM 151
T +VM+P + + PL IT A + EP FM N L+ +
Sbjct: 63 ATLFVMAPVFQDISKRVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHEN 122
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
+ + + K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLHNVACSLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
M+ P ++SLP K++ FVL++GW+ L++ L S++
Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217
>gi|9663090|emb|CAC01108.1| FliP flagellar protein [Helicobacter pylori]
Length = 160
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 108/162 (66%), Gaps = 4/162 (2%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
+ + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF+
Sbjct: 3 TTLNVIALLTLLILAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFF 62
Query: 98 VMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+M P+L ++ + GI+P M+ +I+ T A ++ A PF FM NTREKDL+LF + + +
Sbjct: 63 IMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNP 122
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
T D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 123 KT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160
>gi|86157131|ref|YP_463916.1| type III secretion system protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85773642|gb|ABC80479.1| type III secretion system inner membrane P protein
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 225
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 74/218 (33%), Positives = 124/218 (56%), Gaps = 2/218 (0%)
Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
+P+ ++ + +L++ P L+M+T F + +V SI R+ +G VPPN V+
Sbjct: 7 VPSAGPVADRPAEMLVLLALLALVPAALVMLTSFLKISVVLSIARSALGAPQVPPNTVVT 66
Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET-TAIQRVAEPFWVFMRNNTREKDLSL 147
LAL +T VM+P +R+ + + T A+QR A P F+ R D +
Sbjct: 67 GLALVLTLLVMAPVAERAAALARPAPGERGLPATLAALQRGAGPVKAFLARFARPDDRAA 126
Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
F+D+A D +L P+F++SELRR+F IGFL+ +PFL++D++++ +++
Sbjct: 127 FLDVARRLRAPDAAAPADDD-LAVLAPAFVVSELRRAFTIGFLVFVPFLVVDLVISNVLL 185
Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+G+ L PTS++LPFK++ FV +DGW LL L S+
Sbjct: 186 ALGLTQLSPTSVALPFKLLLFVAVDGWKLLARALALSY 223
>gi|12082757|gb|AAG48604.1|AF306650_1 SpaP [Sodalis glossinidius]
Length = 189
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 94/176 (53%), Gaps = 3/176 (1%)
Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEP 131
G+ VP NL + +AL + ++M P + + + + + ++ E
Sbjct: 1 NAFGLQQVPSNLTLNGIALMLAMFIMGPIAGDAYNAYQEQPVALGSAASVLEFLENSMES 60
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE-YRILIPSFMISELRRSFEIGFL 190
+ +++ + F D + H L+P++ +SE++ SF IGF
Sbjct: 61 YRHYLQKYADPRLTEFFDRAHGGGGAAHDAPASGHAPSMLALLPAYALSEIKDSFRIGFY 120
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ LPF+++D++++++++A+GMMM+ P ++S+P K++ FV++DGW+LL + LV ++
Sbjct: 121 LYLPFVVVDLLISSVLLALGMMMMSPITLSVPIKLVLFVMLDGWTLLSQGLVLQYL 176
>gi|197121155|ref|YP_002133106.1| type III secretion system protein [Anaeromyxobacter sp. K]
gi|220915856|ref|YP_002491160.1| type III secretion system inner membrane P protein
[Anaeromyxobacter dehalogenans 2CP-1]
gi|196171004|gb|ACG71977.1| type III secretion system inner membrane P protein
[Anaeromyxobacter sp. K]
gi|219953710|gb|ACL64094.1| type III secretion system inner membrane P protein
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 225
Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats.
Identities = 69/189 (36%), Positives = 109/189 (57%), Gaps = 2/189 (1%)
Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN- 116
M+T F + +V SI R+ +G VPPN V+ LAL +T VM+P +R+ +
Sbjct: 36 MLTSFLKISVVLSIARSALGAPQVPPNTVVTGLALVLTMLVMAPVAERAAALARPAPGER 95
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
A+QR A P F+ R D + F+D+A D +L P+F
Sbjct: 96 GLAASLAALQRGAGPVKAFLARFARPDDRAAFLDVARRLRAPDAAPPADDD-LAVLAPAF 154
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
++SELRR+F IGFL+ +PFL++D++++ +++A+G+ L PTS++LPFK++ FV +DGW L
Sbjct: 155 VVSELRRAFTIGFLVFVPFLVVDLVISNVLLALGLTQLSPTSVALPFKLLLFVAVDGWKL 214
Query: 237 LVENLVKSF 245
L L S+
Sbjct: 215 LARALALSY 223
>gi|76097667|gb|ABA39515.1| flagellar protein [Paenibacillus larvae subsp. larvae]
Length = 140
Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/144 (44%), Positives = 101/144 (70%), Gaps = 4/144 (2%)
Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
++ LALF T ++M+PTL ++ +QP + ++ +T A+++ AEP FM ++TR KDL
Sbjct: 1 LVGLALFPTLFIMAPTLGDINQVAVQPYIKGELNQTQALEKAAEPIKKFMWSHTRPKDLQ 60
Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
LF+D +++ N + L+P+F ISEL+ +F++GF+I +PFL+IDMI+++ +
Sbjct: 61 LFLDYSNAEKPNG----PEDTPIAALVPAFAISELKTAFQMGFMIFIPFLVIDMIISSTL 116
Query: 207 MAMGMMMLPPTSISLPFKVIFFVL 230
MAMGMMMLPP ISLPFK++ FVL
Sbjct: 117 MAMGMMMLPPVMISLPFKILLFVL 140
>gi|312958828|ref|ZP_07773347.1| type III secretion system rscR [Pseudomonas fluorescens WH6]
gi|311286598|gb|EFQ65160.1| type III secretion system rscR [Pseudomonas fluorescens WH6]
Length = 216
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 68/210 (32%), Positives = 114/210 (54%), Gaps = 2/210 (0%)
Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ LS+ P+LLI+ T F + +IV I R +G+ VPP++ I +AL T ++
Sbjct: 7 PLVLAMFLGALSLMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFI 66
Query: 99 MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M+P E ++ N T P FM N L+ ++
Sbjct: 67 MAPVGYEIAESIKVSPLDLSNVQTVLQTGGEAIMPLRAFMLRNVDPDVLTHLLENTARLW 126
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
+ + +LIP+F++S+L+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 127 PAQMAEEVQREDLILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 186
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ISLP K++ FVL+ GWS L+++L S++
Sbjct: 187 MTISLPLKLLLFVLVSGWSRLLDSLFLSYL 216
>gi|170690582|ref|ZP_02881749.1| Yop virulence translocation R [Burkholderia graminis C4D1M]
gi|170145017|gb|EDT13178.1| Yop virulence translocation R [Burkholderia graminis C4D1M]
Length = 164
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 97/163 (59%), Gaps = 2/163 (1%)
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTRE 142
+V+ +A+ ++ YVM+P +++ + Q T+ EPF F++ +T E
Sbjct: 1 MVLNGVAILVSLYVMAPGRHAAMQSMQGQTIAGQPTQALIQVFSAAREPFRTFLQKHTNE 60
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
++ F+ A+ + + +L P+F ++EL +F+IGFL+ + F++ID+I+
Sbjct: 61 REKRFFIRSANVVWPKDAASSLHENDLIVLAPAFTLTELTDAFKIGFLLYIAFIVIDLII 120
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A +++AMG+ + PT++++PFK++ FV++DGWS L+ LV ++
Sbjct: 121 ANVLLAMGLNQVTPTNVAIPFKLLLFVVMDGWSTLIHGLVMTY 163
>gi|179742716|gb|ACB86743.1| HrcR [uncultured soil bacterium]
Length = 160
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI-QPLMNNQITETTA-IQRVAEPFW 133
+G+ VPPN+ +AL T +VM+P + PL A V EP
Sbjct: 7 LGVQQVPPNMATHGIALAATMFVMAPVAHEIQQRVHDHPLEMGSTDRLQASANTVIEPLQ 66
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM NT ++ +D + + + +P+F++SEL+ F+IGFLI +
Sbjct: 67 RFMTRNTDPDVIAHLLDNTQRMWPKDMADQASKSDLLLAVPAFVLSELQAGFQIGFLIYI 126
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
PF++ID+IV+ +++A+GM M+ P +ISLPFK++
Sbjct: 127 PFIVIDLIVSNLLLALGMQMVSPMTISLPFKLLL 160
>gi|229011059|ref|ZP_04168253.1| Flagellar biosynthetic protein FliP [Bacillus mycoides DSM 2048]
gi|228750231|gb|EEM00063.1| Flagellar biosynthetic protein FliP [Bacillus mycoides DSM 2048]
Length = 177
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/179 (30%), Positives = 103/179 (57%), Gaps = 4/179 (2%)
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A
Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+ A +M +T + DL + + + + L+PSF ++++++
Sbjct: 61 ETTAPIMKDYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
G I L F+ ID+I++T++M +GMMM+PP+ +SLPFK++ FV + G++ +V+ + K+
Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPSILSLPFKILVFVYLGGYTKIVDIMFKT 175
>gi|229096251|ref|ZP_04227224.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-29]
gi|229102365|ref|ZP_04233073.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-28]
gi|229115206|ref|ZP_04244616.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-3]
gi|228668346|gb|EEL23778.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-3]
gi|228681012|gb|EEL35181.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-28]
gi|228687211|gb|EEL41116.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-29]
Length = 177
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 56/179 (31%), Positives = 102/179 (56%), Gaps = 4/179 (2%)
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ QIT + A
Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEQITVSQAA 60
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+ A +M +T + DL + + + + L+PSF ++++++
Sbjct: 61 ETTAPIMKDYMAKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+
Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175
>gi|213613057|ref|ZP_03370883.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 158
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLF 148
AL ++ ++M PTL E + T+ + P+ F++ N+ EK+ + F
Sbjct: 1 FALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYF 60
Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
++ + K ILIP+F +S+L ++F IG LI LPFL ID++++ I++A
Sbjct: 61 RNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLA 120
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGMMM+ P +ISLPFK++ F+L GW L + LV+SF
Sbjct: 121 MGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 157
>gi|229017052|ref|ZP_04173971.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1273]
gi|229023233|ref|ZP_04179743.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1272]
gi|228738027|gb|EEL88513.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1272]
gi|228744225|gb|EEL94308.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1273]
Length = 177
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/179 (30%), Positives = 102/179 (56%), Gaps = 4/179 (2%)
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A
Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+ A +M +T + DL + + + + L+PSF ++++++
Sbjct: 61 ETTAPIMKDYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+
Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175
>gi|229160728|ref|ZP_04288720.1| Flagellar biosynthetic protein FliP [Bacillus cereus R309803]
gi|228622743|gb|EEK79577.1| Flagellar biosynthetic protein FliP [Bacillus cereus R309803]
Length = 177
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 56/179 (31%), Positives = 102/179 (56%), Gaps = 4/179 (2%)
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ QIT + A
Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEQITVSQAA 60
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+ A +M +T + DL + + + + L+PSF ++++++
Sbjct: 61 ETTAPIMKDYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+
Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175
>gi|229058415|ref|ZP_04196799.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH603]
gi|229132594|ref|ZP_04261442.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST196]
gi|229166621|ref|ZP_04294373.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH621]
gi|228616875|gb|EEK73948.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH621]
gi|228650826|gb|EEL06813.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST196]
gi|228719924|gb|EEL71514.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH603]
Length = 177
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/179 (30%), Positives = 102/179 (56%), Gaps = 4/179 (2%)
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A
Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+ A +M +T + DL + + + + L+PSF ++++++
Sbjct: 61 ETTAPIMKDYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+
Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175
>gi|73532640|dbj|BAE19878.1| type III secretion apparatus [Edwardsiella tarda]
Length = 171
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 1/170 (0%)
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVF 135
G P N+ + LAL +T ++M+P Q T + +P+ F
Sbjct: 1 GYSRSPRNIALYGLALILTLFIMTPVGTAVQARLADAPAEAQTTLLARLSDNTLDPYRQF 60
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
+R +T L F +A S + + +L+P+F +S+L +F+IG L+ LPF
Sbjct: 61 LRQHTSATQLHFFRQVATKSWPASVREQISDDSLLLLMPAFAVSQLVEAFQIGLLLFLPF 120
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+ ID+IV+ I++AMGMMM+ P +IS+PFK++ F+L+ GW L+ L+ S+
Sbjct: 121 IAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGGWDKLLGQLLLSY 170
>gi|333008529|gb|EGK27998.1| putative type III secretion apparatus integral membrane protein
component [Shigella flexneri K-218]
gi|333017443|gb|EGK36759.1| surface presentation of antigens protein spaP [Shigella flexneri
K-227]
gi|333020359|gb|EGK39623.1| putative type III secretion apparatus integral membrane protein
component [Shigella flexneri K-304]
Length = 167
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 97/164 (59%), Gaps = 3/164 (1%)
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQ-PLMNNQITETTAI-QRVAEPFWVFMRNNTRE 142
+ + +AL M +VM P ++ E + P + I++ + +++ +T
Sbjct: 1 MTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHTDL 60
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
+ L+ F + + + +N+ L+P++ +SE++ +F+IGF + LPF+++D+++
Sbjct: 61 E-LARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDLVI 119
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++I++A+GMMM+ P +IS+P K++ FV +DGW +L + L++ +I
Sbjct: 120 SSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYI 163
>gi|228900348|ref|ZP_04064577.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL
4222]
gi|228907399|ref|ZP_04071257.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL
200]
gi|228914344|ref|ZP_04077959.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228920476|ref|ZP_04083821.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228926802|ref|ZP_04089870.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228933050|ref|ZP_04095913.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228938879|ref|ZP_04101479.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228945369|ref|ZP_04107724.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228952149|ref|ZP_04114241.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228958047|ref|ZP_04119782.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228964750|ref|ZP_04125857.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228971760|ref|ZP_04132381.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978369|ref|ZP_04138746.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis Bt407]
gi|228984851|ref|ZP_04145021.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229029446|ref|ZP_04185529.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1271]
gi|229043522|ref|ZP_04191231.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH676]
gi|229069317|ref|ZP_04202607.1| Flagellar biosynthetic protein FliP [Bacillus cereus F65185]
gi|229078948|ref|ZP_04211500.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock4-2]
gi|229090729|ref|ZP_04221962.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-42]
gi|229109222|ref|ZP_04238821.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-15]
gi|229121318|ref|ZP_04250549.1| Flagellar biosynthetic protein FliP [Bacillus cereus 95/8201]
gi|229127093|ref|ZP_04256090.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-Cer4]
gi|229138466|ref|ZP_04267055.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST26]
gi|229149971|ref|ZP_04278197.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1550]
gi|229155337|ref|ZP_04283447.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 4342]
gi|229172412|ref|ZP_04299971.1| Flagellar biosynthetic protein FliP [Bacillus cereus MM3]
gi|229178174|ref|ZP_04305545.1| Flagellar biosynthetic protein FliP [Bacillus cereus 172560W]
gi|229183958|ref|ZP_04311173.1| Flagellar biosynthetic protein FliP [Bacillus cereus BGSC 6E1]
gi|229189864|ref|ZP_04316874.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 10876]
gi|229195978|ref|ZP_04322731.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1293]
gi|228587537|gb|EEK45602.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1293]
gi|228593538|gb|EEK51347.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 10876]
gi|228599483|gb|EEK57088.1| Flagellar biosynthetic protein FliP [Bacillus cereus BGSC 6E1]
gi|228605304|gb|EEK62754.1| Flagellar biosynthetic protein FliP [Bacillus cereus 172560W]
gi|228610883|gb|EEK68146.1| Flagellar biosynthetic protein FliP [Bacillus cereus MM3]
gi|228628052|gb|EEK84769.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 4342]
gi|228633493|gb|EEK90096.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1550]
gi|228645003|gb|EEL01246.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST26]
gi|228656209|gb|EEL12050.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-Cer4]
gi|228662163|gb|EEL17772.1| Flagellar biosynthetic protein FliP [Bacillus cereus 95/8201]
gi|228674232|gb|EEL29477.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-15]
gi|228692671|gb|EEL46397.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-42]
gi|228704362|gb|EEL56796.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock4-2]
gi|228713804|gb|EEL65689.1| Flagellar biosynthetic protein FliP [Bacillus cereus F65185]
gi|228725744|gb|EEL76992.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH676]
gi|228731905|gb|EEL82804.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1271]
gi|228774801|gb|EEM23197.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228781386|gb|EEM29587.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis Bt407]
gi|228787850|gb|EEM35808.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228795000|gb|EEM42499.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228801564|gb|EEM48446.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228807503|gb|EEM54030.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228814341|gb|EEM60607.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228820728|gb|EEM66753.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228826651|gb|EEM72422.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832915|gb|EEM78484.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228839106|gb|EEM84402.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228845338|gb|EEM90374.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228852260|gb|EEM97056.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL
200]
gi|228859235|gb|EEN03666.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL
4222]
Length = 177
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 55/179 (30%), Positives = 102/179 (56%), Gaps = 4/179 (2%)
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A
Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+ A +M +T + DL + + + + L+PSF ++++++
Sbjct: 61 ETTAPIMKEYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+
Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175
>gi|179742375|gb|ACB86738.1| HrcR [uncultured soil bacterium]
Length = 155
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFW 133
+G+ VPPN+V+ LAL M+ YVM P G++ + + + A EP
Sbjct: 1 IGVQQVPPNVVLNGLALVMSVYVMYPVGTEMGARMQGLKDIGGSTQSMLKAADSAKEPLR 60
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F+ ++R + FM A + + ++ +++P+F +SEL +FEIGFLI L
Sbjct: 61 EFLVKHSRPLERGFFMKTAQKALKPEQAATLTDRDFLVIVPAFTVSELSVAFEIGFLIFL 120
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
PFL+ID++++ I+MAMGMMML PT++S+P K++ F
Sbjct: 121 PFLVIDLVISNILMAMGMMMLSPTTVSMPLKLLLF 155
>gi|229144379|ref|ZP_04272784.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST24]
gi|228639010|gb|EEK95435.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST24]
Length = 177
Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 55/179 (30%), Positives = 102/179 (56%), Gaps = 4/179 (2%)
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A
Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60
Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
+ A +M +T + DL + + + + L+PSF ++++++
Sbjct: 61 ETTAPIMKEYMSKHTYKHDLKMMLKVRGEQLPK----DLKDLSLFTLVPSFTLTQIQKGL 116
Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+
Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175
>gi|179741187|gb|ACB86708.1| HrcR [Dyella japonica]
Length = 154
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWV 134
G+ VPPN+V+ +A+ ++ Y+M+P ++ + ++ Q T+ EPF +
Sbjct: 1 GVQQVPPNMVLNGIAILVSLYIMAPIGMQAAQSLQGQQIDGQPTQALIQVFSAAREPFRL 60
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
F+ + E++ F+ A + +L P+F +SEL +F+IGFL+ +
Sbjct: 61 FLEKHAHEREKRFFIRSASVVWPKEAARALHENDMIVLAPAFTLSELTDAFKIGFLLYIA 120
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
F++ID+I+A +++AMG+ + PT++++P K++ F
Sbjct: 121 FIVIDLIIANVLLAMGLNQVQPTNVAIPLKLLLF 154
>gi|179741073|gb|ACB86704.1| HrcR [Burkholderia cepacia]
Length = 157
Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM---GIQPLMNNQITETTAIQRVAEPF 132
+G+ VPPN+V+ +A+ ++ YV++P + P + A EPF
Sbjct: 3 IGVQQVPPNMVLNGIAILVSAYVLAPVAIAASRNLPTDRPPANRVRRRWMQAFSAAREPF 62
Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
F+ + +++ F+ A ++ + +L P+F ++EL +F+IGFL+
Sbjct: 63 RTFLEAHAHQRERRFFVRSAAMVWPKDVASELKDTDLFVLAPAFTLTELTEAFKIGFLLY 122
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
+ F+++D+I+A +++AMG+ + PT++++PFK++
Sbjct: 123 VAFIVVDLIIANVLLAMGLNQVQPTNVAIPFKLLL 157
>gi|331654351|ref|ZP_08355351.1| surface presentation of antigens secretory protein [Escherichia
coli M718]
gi|331047733|gb|EGI19810.1| surface presentation of antigens secretory protein [Escherichia
coli M718]
Length = 172
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 87/165 (52%), Gaps = 4/165 (2%)
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTRE 142
+ + +AL ++ +VM P NN + ++ + ++ +
Sbjct: 1 MTLNGVALLLSMFVMMPVGKEIYNNSHNENLSFNNVASVVNFVETGMSGYKSYLIKYSEP 60
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDM 200
+ +S F + + + D I L+P++ +SE++ +F IGF I LPF+++D+
Sbjct: 61 ELVSFFEKIQKVNGSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDL 120
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 121 VISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165
>gi|331643550|ref|ZP_08344681.1| surface presentation of antigens secretory protein [Escherichia
coli H736]
gi|331037021|gb|EGI09245.1| surface presentation of antigens secretory protein [Escherichia
coli H736]
Length = 172
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTRE 142
+ + +AL ++ +VM P NN + ++ + ++ +
Sbjct: 1 MTLNGVALLLSMFVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEP 60
Query: 143 KDLSLFMDMAH--SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+ ++ F + SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D+
Sbjct: 61 ELVNFFEKIQKVNSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDL 120
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 121 VISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165
>gi|179741398|gb|ACB86714.1| HrcR [uncultured soil bacterium]
gi|179741939|gb|ACB86730.1| HrcR [uncultured soil bacterium]
Length = 159
Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE-----MGIQPLMNNQITETTAIQRVAE 130
+G+ VPPN+V+ LAL +T YVM P R + G+ + ++ E
Sbjct: 3 IGVQQVPPNIVLNGLALVLTLYVMQPVGARMADAVGGANGLAGVTSSTGNMMETANLAKE 62
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P F+ ++R + + F+ A + +D ++ I +P+F+++EL +F+IGFL
Sbjct: 63 PLREFLLKHSRPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAFVVNELSVAFQIGFL 121
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
I LPFL+ID++++ I++AMGMMML PT+ISLP K++ F
Sbjct: 122 IFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 159
>gi|179741982|gb|ACB86732.1| HrcR [uncultured soil bacterium]
Length = 159
Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats.
Identities = 55/158 (34%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE-----MGIQPLMNNQITETTAIQRVAE 130
+G+ VPPN+V+ LAL +T YVM P R + G+ + ++ E
Sbjct: 1 IGVQQVPPNIVLNGLALVLTLYVMQPVGARMADAVGGANGLAGVTSSTGNMMETANLAKE 60
Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
P F+ +++ + + F+ A + +D ++ I +P+F+++EL +F+IGFL
Sbjct: 61 PLREFLLKHSQPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAFVVNELSVAFQIGFL 119
Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
I LPFL+ID++++ I++AMGMMML PT+ISLP K++ F
Sbjct: 120 IFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 157
>gi|254511334|ref|ZP_05123401.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
KLH11]
gi|221535045|gb|EEE38033.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
KLH11]
Length = 146
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
M P + E GIQP++ + A++R PF FM D F MA
Sbjct: 1 MEPVFSEAWEAGIQPMVEETLDVEPALERALVPFRSFMAARL---DADTFQAMAALRPDG 57
Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
T + + +L+PSFM+SE+ R+F+IGFLI LPFLIID++VA ++M+MGMMM+PP +
Sbjct: 58 TQMQLSPEAPLSVLMPSFMLSEIARAFQIGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAT 117
Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+SLPFK+ FFV+ DGW+L+ LV+S++
Sbjct: 118 VSLPFKLAFFVIADGWALIASALVRSYV 145
>gi|324119902|gb|EGC13781.1| FliP family protein [Escherichia coli E1167]
Length = 172
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 87/165 (52%), Gaps = 4/165 (2%)
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTRE 142
+ + +AL ++ +VM P NN + ++ + ++ +
Sbjct: 1 MTLNGVALLLSMFVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEP 60
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDM 200
+ +S F + + + D I L+P++ +SE++ +F IGF I LPF+++D+
Sbjct: 61 ELVSFFEKIQKVNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDL 120
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 121 VISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165
>gi|179742187|gb|ACB86736.1| HrcR [uncultured soil bacterium]
Length = 155
Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
+G+ VPPN+V+ +A+ ++ Y+M+P +++ Q N T I EPF
Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ +
Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
F+++D+++A ++MAMG+ + PT++++PFK++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155
>gi|179741622|gb|ACB86721.1| HrcR [uncultured soil bacterium]
Length = 157
Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
+G+ VPPN+V+ +A+ ++ ++M+P +++ Q N T I EPF
Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVHIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ +
Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
F+++D+++A ++MAMG+ + PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155
>gi|179741593|gb|ACB86720.1| HrcR [uncultured soil bacterium]
Length = 157
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
+G+ VPPN+V+ +A+ ++ Y+M+P +++ Q N T I EPF
Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGITAAREPFR 60
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ +
Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
F+++D+++A ++MAMG+ + PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155
>gi|179741104|gb|ACB86705.1| HrcR [Pseudomonas fluorescens]
Length = 162
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFW 133
+G+ VPP++ I +AL T ++M+P + E ++ N T EP
Sbjct: 2 IGVQQVPPSMAINGIALAATLFIMAPVGYQVAENLKNAPLDMSNVQTLQQTGLVAIEPLR 61
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM+ N L+ + + + + +LIPSF++S+L+ FEIGFLI +
Sbjct: 62 AFMKRNIDPDVLTHMHESSARMWPPEMAQSTEREDLILLIPSFVLSQLQAGFEIGFLIYI 121
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
PF++ID+IV+ +++A+GM M+ P +ISLPFK++ F
Sbjct: 122 PFIVIDLIVSNLLLALGMQMVSPMTISLPFKLLLF 156
>gi|179742748|gb|ACB86744.1| HrcR [uncultured soil bacterium]
Length = 158
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 85/158 (53%), Gaps = 5/158 (3%)
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ-ITETTAIQRVAEPFWVFM 136
+ VPP V+ +A+ ++ ++M+P ++ + + EPF VF+
Sbjct: 1 VQQVPPTSVLNGVAIMVSCFIMAPVGMEAMHRAQLSSDAGSGMQVMPLLDAAREPFRVFL 60
Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
+ + E++ + F+ A + + +L P+F +SEL +F++GFL+ L F+
Sbjct: 61 KRHASEREKAFFLRSAREIWPPERAAELKQDDLIVLAPAFTLSELTAAFKMGFLLYLAFI 120
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
+ID+++A+++MA+G+ + PT +++P +++ F GW
Sbjct: 121 VIDLVIASVLMALGLSQVDPTDVAIPLELLLF----GW 154
>gi|179742060|gb|ACB86734.1| HrcR [uncultured soil bacterium]
Length = 157
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
+G+ VPPN+V+ +A+ ++ Y+M+P +++ Q N T I EPF
Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ +
Sbjct: 61 TFLEAHAKSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
F+++D+++A ++MAMG+ PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQAQPTNVAIPLKLLLF 155
>gi|179741127|gb|ACB86706.1| HrcR [Burkholderia terrae]
Length = 155
Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
+G+ VPPN+V+ +A+ ++ Y+M+P +++ Q N T I EPF
Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ +
Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
F+++++++A ++MAMG+ + PT++++PFK++ F
Sbjct: 121 GFIVVNLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155
>gi|179741780|gb|ACB86726.1| HrcR [uncultured soil bacterium]
Length = 157
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
+G+ VPPN+V+ +A+ ++ Y+ +P +++ Q N T I EPF
Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYITAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F++ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ +
Sbjct: 61 TFLKAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
F+++D+++A ++MAMG+ + PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155
>gi|179741249|gb|ACB86709.1| HrcR [uncultured soil bacterium]
Length = 157
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
+G+ VPPN+V+ +A+ ++ Y+M+P +++ Q N T I PF
Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAARVPFR 60
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F+ + + + F+ A + + +L P+F ++EL +F+IGFL+ +
Sbjct: 61 TFLEAHAQSCERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
F+++D+++A ++MAMG+ + PT++++PFK++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155
>gi|289805125|ref|ZP_06535754.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 117
Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats.
Identities = 57/119 (47%), Positives = 88/119 (73%), Gaps = 4/119 (3%)
Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
+ A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL+ +F+
Sbjct: 1 KGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQ 56
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 57 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 115
>gi|179741717|gb|ACB86724.1| HrcR [uncultured soil bacterium]
Length = 158
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
+G+ VPPN+V+ +A+ + P +++ Q N T I EPF
Sbjct: 2 IGVQQVPPNMVLNGIAIIVLASPTPPVAFSAMQGKQANQAPGNVTQNVTAGIAAAREPFC 61
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ +
Sbjct: 62 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 121
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
F+++D+++A ++MAMG+ + PT++++PFK++ F
Sbjct: 122 GFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 156
>gi|179742029|gb|ACB86733.1| HrcR [uncultured soil bacterium]
Length = 157
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
+G+ VPPN+V+ +A+ ++ Y+M+P +++ Q N T I EPF
Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ +
Sbjct: 61 TFLEVHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTGAFKIGFLLYI 120
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
F+++D+++A ++MAMG+ + PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155
>gi|293416108|ref|ZP_06658748.1| hypothetical protein ECDG_03710 [Escherichia coli B185]
gi|291432297|gb|EFF05279.1| hypothetical protein ECDG_03710 [Escherichia coli B185]
Length = 172
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 86/165 (52%), Gaps = 4/165 (2%)
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI--QRVAEPFWVFMRNNTRE 142
+ + +AL ++ +VM P ++ + + + ++ +
Sbjct: 1 MTLNGVALLLSMFVMMPVGKEIYYNSQNENLSFNNVVSVVNFVETGMSGYKSYLIKYSEP 60
Query: 143 KDLSLFMDMAHSSHRNTDITKNDH--IEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
+ +S F + + + D I L+P++ +SE++ +F IGF I LPF+++D+
Sbjct: 61 ELVSFFEKIQKVNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDL 120
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 121 VISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165
>gi|179741500|gb|ACB86717.1| HrcR [uncultured soil bacterium]
Length = 157
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
+G+ VPPN+V+ +A+ ++ Y+M+P +++ Q N T I EPF
Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ +
Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
F+++D+++A ++MAMG+ + PT++++P K++
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLL 154
>gi|323183415|gb|EFZ68812.1| putative type III secretion apparatus integral membrane protein
component [Escherichia coli 1357]
Length = 165
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 92 LFMTFYVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
+ ++ +VM P NN + ++ + ++ + + +S F
Sbjct: 1 MLLSMFVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFE 60
Query: 150 DMAHSSHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
+ + + D I L+P++ +SE++ +F IGF I LPF+++D++++++++
Sbjct: 61 KIQKVNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLL 120
Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
+GMMM+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 121 TLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 158
>gi|327251616|gb|EGE63302.1| putative type III secretion apparatus integral membrane protein
component [Escherichia coli STEC_7v]
Length = 158
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 78/151 (51%), Gaps = 4/151 (2%)
Query: 99 MSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M P NN + ++ + ++ + + +S F + +
Sbjct: 1 MMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKVNS 60
Query: 157 RNTDITKNDH--IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
+ D I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM+
Sbjct: 61 SEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMMM 120
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
P +IS P K+I FV +DGW++L + L+ +
Sbjct: 121 SPVTISTPIKLILFVAMDGWTMLSKGLILQY 151
>gi|320189199|gb|EFW63858.1| surface presentation of antigens protein SpaP [Escherichia coli
O157:H7 str. EC1212]
gi|326339060|gb|EGD62875.1| surface presentation of antigens protein SpaP [Escherichia coli
O157:H7 str. 1044]
gi|326343059|gb|EGD66827.1| surface presentation of antigens protein SpaP [Escherichia coli
O157:H7 str. 1125]
Length = 158
Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 78/151 (51%), Gaps = 4/151 (2%)
Query: 99 MSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
M P NN + ++ + ++ + + +S F + +
Sbjct: 1 MMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKVNS 60
Query: 157 RNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
+ D I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM+
Sbjct: 61 SEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMMM 120
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
P +IS P K+I FV +DGW++L + L+ +
Sbjct: 121 SPVTISTPIKLILFVAMDGWTMLSKGLILQY 151
>gi|179741693|gb|ACB86723.1| HrcR [uncultured soil bacterium]
Length = 157
Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
+G+ VP N+V+ +A+ ++ Y+M+P +++ Q N T I EPF
Sbjct: 1 IGVQQVPLNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ +
Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
F+++D+++A ++MAMG+ + PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155
>gi|179741157|gb|ACB86707.1| HrcR [Burkholderia terrae]
Length = 154
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 84/151 (55%), Gaps = 2/151 (1%)
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMR 137
VPPN+V+ +A+ ++ Y+M+P +++ Q N T I EPF F+
Sbjct: 4 QVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFRTFLE 63
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
+ + ++ F+ A + + +L P+F ++EL +F+IGFL+ + F++
Sbjct: 64 AHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYIGFIV 123
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+D+++A ++MAMG+ + PT++++P K++ F
Sbjct: 124 VDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 154
>gi|179741438|gb|ACB86715.1| HrcR [uncultured soil bacterium]
Length = 157
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
+G+ VPPN+V+ +A+ ++ + +P +++ Q N T I EPF
Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVSLPAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ +
Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
F+++D+++A ++MAMG+ + PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155
>gi|179742484|gb|ACB86740.1| HrcR [uncultured soil bacterium]
Length = 153
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNT 140
PN+V+ +A+ ++ Y+M+P ++ + ++ + T+ EPF +F+ +
Sbjct: 7 PNMVLNGIAILVSLYIMAPIGMQAAQSLQGQQIDGRPTQALIQVFSAAREPFRLFLEKHA 66
Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
E+ F+ A + +L P+F +SEL +F+IGFL+ + F++ID+
Sbjct: 67 HERGKRFFIRSASVVWPKEAARALHENDMIVLAPAFTLSELTDAFKIGFLLYIAFIVIDL 126
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIF 227
I+A +++AMG+ + PT++++P K++
Sbjct: 127 IIANVLLAMGLNQVQPTNVAIPLKLLL 153
>gi|323155908|gb|EFZ42075.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
coli EPECa14]
Length = 195
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T
Sbjct: 9 SQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTM 68
Query: 97 YVMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
++MSP + + + Q +N + +++ P+ F+ NT ++++ F A
Sbjct: 69 FIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFERAAQK 128
Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
N I K D IL+P+F + +L +F+IGFL+ LPF+ I
Sbjct: 129 KLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAI 170
>gi|179741659|gb|ACB86722.1| HrcR [uncultured soil bacterium]
Length = 157
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
+G+ VP N+V+ +A+ ++ + +P +++ Q N T I EPF
Sbjct: 1 IGVQQVPLNMVLNGIAIIVSVSITAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ +
Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
F+++D+++A ++MAMG+ + PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155
>gi|255523692|ref|ZP_05390658.1| type III secretion system inner membrane P protein [Clostridium
carboxidivorans P7]
gi|255512561|gb|EET88835.1| type III secretion system inner membrane P protein [Clostridium
carboxidivorans P7]
Length = 164
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 71/143 (49%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
I F A + F ++ ++ + ++ + TIL+I P ++M+T
Sbjct: 18 IFLMFAASKVYAAPEAFPIPKVNISVDNASTPQQYVGNIKLLIMLTILTILPSFIMMMTS 77
Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
F R I+VF LR MG PPN ++I LALF+T ++M P + IQP M N+IT+
Sbjct: 78 FVRIIVVFGFLRGAMGTQQSPPNTILIGLALFLTVFIMQPVYSKVNTNAIQPYMQNKITQ 137
Query: 122 TTAIQRVAEPFWVFMRNNTREKD 144
AI A+P FM T +KD
Sbjct: 138 EQAIDEGAKPLRQFMLKYTYKKD 160
>gi|158834391|gb|ABW81990.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834393|gb|ABW81991.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834395|gb|ABW81992.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834397|gb|ABW81993.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834399|gb|ABW81994.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834405|gb|ABW81997.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834407|gb|ABW81998.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834423|gb|ABW82005.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834430|gb|ABW82008.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
Length = 155
Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 75/155 (48%), Gaps = 3/155 (1%)
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
+ TC+ +F IVF ++R +G+ +P N+ + +AL + +VM P + E
Sbjct: 1 IASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIVKNIYEGHKNAQF 60
Query: 116 N--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE-YRIL 172
+ N + ++ + + ++ + F A + L
Sbjct: 61 DVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFAGAEEEKPSIFAL 120
Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
+P++ +SE++ +F+IGF I LPF+++D+++++I++
Sbjct: 121 LPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155
>gi|158834401|gb|ABW81995.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834409|gb|ABW81999.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834411|gb|ABW82000.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834413|gb|ABW82001.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834415|gb|ABW82002.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834418|gb|ABW82003.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834420|gb|ABW82004.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834425|gb|ABW82006.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
gi|158834427|gb|ABW82007.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
Length = 155
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 76/155 (49%), Gaps = 3/155 (1%)
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
+ TC+ +F IVF ++R +G+ +P N+ + +AL + +VM P + E
Sbjct: 1 IASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIVKNIYEGHKNAQF 60
Query: 116 N--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE-YRIL 172
+ N + ++ + + ++ + F A + + L
Sbjct: 61 DVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFVGAEEEKPSIFAL 120
Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
+P++ +SE++ +F+IGF I LPF+++D+++++I++
Sbjct: 121 LPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155
>gi|158834403|gb|ABW81996.1| type III secretion system inner membrane component [Candidatus
Hamiltonella defensa]
Length = 155
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 75/155 (48%), Gaps = 3/155 (1%)
Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
+ TC+ +F IVF ++R +G+ +P N+ + +AL + +VM P + E
Sbjct: 1 IASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIVKNIYEGYKNAQF 60
Query: 116 N--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE-YRIL 172
+ N + ++ + + ++ + F A + L
Sbjct: 61 DVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFAGAEEEKPSIFAL 120
Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
+P++ +SE++ +F+IGF I LPF+++D+++++I++
Sbjct: 121 LPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155
>gi|213027551|ref|ZP_03341998.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 170
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 90 LALFMTFYVMSPTLDR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
+AL ++ +VM P + N+ + + + + + ++ + + +
Sbjct: 1 VALLLSMFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQF 60
Query: 148 FMDMAHSSHR-------NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
F + D + + L+P++ +SE++ +F+IGF + LPF+++D+
Sbjct: 61 FENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDL 120
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+V+++++A+GMMM+ P +IS P K++ FV +DGW+LL + L+ ++
Sbjct: 121 VVSSVLLALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 166
>gi|218513456|ref|ZP_03510296.1| flagellar biosynthesis protein FliP [Rhizobium etli 8C-3]
Length = 124
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 70/100 (70%), Positives = 87/100 (87%), Gaps = 2/100 (2%)
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
M NTR+KDL+LF+D+A R +I +D I+YR+LIP+FMISE+RR FEIGFL++LPF
Sbjct: 1 MAANTRDKDLALFVDLARE--RGQNIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPF 58
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
L+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+
Sbjct: 59 LVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWN 98
>gi|179742405|gb|ACB86739.1| HrcR [uncultured soil bacterium]
Length = 154
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFW 133
+G+ VPPN+ + +AL T +VM+P + + TE T+ V EP
Sbjct: 1 IGVQQVPPNMAMYGIALAATMFVMAPVAHDIQQRVHDHPLEMGSTEKLQTSAMTVIEPLQ 60
Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
FM NT + +D + + + +P+F++SEL+ F+IGFLI +
Sbjct: 61 RFMTRNTDPDVSAHLLDNTQRMWPKDMADQATKNDLLLAVPAFVLSELQAGFQIGFLIYI 120
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTS 218
PF++ID+IV+ +++A+GM M+ P +
Sbjct: 121 PFIVIDLIVSNLLLALGMQMVSPMT 145
>gi|218512614|ref|ZP_03509454.1| type III secretion system protein [Rhizobium etli 8C-3]
Length = 148
Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 73/125 (58%)
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ +VA P FM + + F+ + N T + +L PSF++SE
Sbjct: 22 MADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATPIASDDITVLTPSFLVSE 81
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L R+FEIGFLI LPFL+ID V+ I++A+GM M+ PT +S P K++ FV IDGW L+E
Sbjct: 82 LTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPLKLLLFVSIDGWRRLLEG 141
Query: 241 LVKSF 245
LV S+
Sbjct: 142 LVLSY 146
>gi|270488967|ref|ZP_06206041.1| FliP family protein [Yersinia pestis KIM D27]
gi|270337471|gb|EFA48248.1| FliP family protein [Yersinia pestis KIM D27]
Length = 169
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 2/161 (1%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
+ + + +LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL
Sbjct: 2 ELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
+T ++M+P ++N I Q P+ F++ NT + ++ F D+
Sbjct: 62 LTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI 121
Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
+ IL+P+F +S+L +F+IG L+
Sbjct: 122 VQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLF 162
>gi|296535008|ref|ZP_06897288.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC
49957]
gi|296264663|gb|EFH11008.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC
49957]
Length = 190
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 51/149 (34%), Positives = 82/149 (55%)
Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
+ + S++T IV T+L++AP +L++ T F R ++V S+LRT
Sbjct: 42 SVTLSLGPQGGQAVASGAQSLTTNIVGLIVATTLLALAPGILVVATAFTRIVVVLSMLRT 101
Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
+G+ PPN VI+SL+LF+ +VM+P L+R+ +PL++ ITE A +R PF
Sbjct: 102 ALGLQQSPPNSVIVSLSLFLAAFVMAPVLERAWNDAARPLIDGTITEEMAAERAIAPFRS 161
Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITK 163
FM N RE+DL+LF+++A
Sbjct: 162 FMEANVRERDLALFIEIARWQPPPEPPRA 190
>gi|149922183|ref|ZP_01910621.1| flagellar biosynthesis protein [Plesiocystis pacifica SIR-1]
gi|149816923|gb|EDM76408.1| flagellar biosynthesis protein [Plesiocystis pacifica SIR-1]
Length = 216
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 13/190 (6%)
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
T F + IV + +R G+ + P +++L + +T VM+P E L +
Sbjct: 36 CTAFTKIAIVLAAVRQGLSADRLLPVSSMLALGVALTAVVMAPVAGACAEALAALLDASA 95
Query: 119 ITETTAIQR---VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
E A+++ EP FM +T +L + + IL+P+
Sbjct: 96 AGEGVALRQWLGTLEPLRGFMATHTDPAELERLAAASERGVDDP----------LILVPA 145
Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
F++SEL ++ L++LPF++ID+IVA + +G+ P + +LP KV+ F+ DGW
Sbjct: 146 FLVSELGAGLQLAVLVLLPFVVIDLIVAEVQALLGLQQTPSVTFALPAKVLVFLAADGWH 205
Query: 236 LLVENLVKSF 245
L+V LV+ +
Sbjct: 206 LVVVGLVEGY 215
>gi|289805085|ref|ZP_06535714.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 111
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/110 (42%), Positives = 72/110 (65%)
Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
M+ N+ EK+ + F ++ + K ILIP+F +S+L ++F IG LI LPF
Sbjct: 1 MQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPF 60
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
L ID++++ I++AMGMMM+ P +ISLPFK++ F+L GW L + LV+SF
Sbjct: 61 LAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 110
>gi|218670285|ref|ZP_03519956.1| flagellar biosynthesis protein FliP [Rhizobium etli GR56]
Length = 96
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 66/89 (74%), Positives = 81/89 (91%)
Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
R +I +D I+YR+LIP+FMISE+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPP
Sbjct: 7 RGQNIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPP 66
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
TSISLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 67 TSISLPFKILFFVLIDGWNLLVGSLVRSF 95
>gi|225181597|ref|ZP_03735038.1| type III secretion system inner membrane P protein [Dethiobacter
alkaliphilus AHT 1]
gi|225167705|gb|EEG76515.1| type III secretion system inner membrane P protein [Dethiobacter
alkaliphilus AHT 1]
Length = 131
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
+T F R ++V +R + PPN VII LALF+TF++M+P R E I P + ++
Sbjct: 1 MTSFTRIVVVLGFVRNALATQQTPPNRVIIGLALFLTFFIMAPIYSRVNETAILPSLEDE 60
Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
IT A+ + P FM T EK L LF++++ T D + +L+P+F+I
Sbjct: 61 ITSEYALATRSPPLERFMVQQTTEKVLPLFVNLSDGERPETM----DDLPMHVLVPAFVI 116
Query: 179 SELRR 183
SEL+
Sbjct: 117 SELKT 121
>gi|313056235|dbj|BAJ39835.1| putative type III secretion system apparatus protein VscR2 [Vibrio
mimicus]
gi|313056265|dbj|BAJ39850.1| putative type III secretion system apparatus protein VscR2 [Vibrio
mimicus]
Length = 243
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 20/201 (9%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P
Sbjct: 48 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 106
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ Q + + M N L K D + I +P
Sbjct: 107 FSQQEKQELNQDFDND-----MPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELP 161
Query: 175 --------------SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
+ +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS
Sbjct: 162 FNFDKDHDTFKYFVASLIYDLYKGFELGLKLYIIFVSIDFLIAVILSGVGMTMLSPTVIS 221
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 222 TPVKLAVFYFSDSWTILFKAL 242
>gi|179741749|gb|ACB86725.1| HrcR [uncultured soil bacterium]
Length = 122
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 65/120 (54%)
Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
Q N T I EPF F+ + + ++ F+ A + +
Sbjct: 1 QANQAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTD 60
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++PFK++ F
Sbjct: 61 LIVLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 120
>gi|312972918|ref|ZP_07787091.1| putative type III secretion apparatus integral membrane protein
component [Escherichia coli 1827-70]
gi|310332860|gb|EFQ00074.1| putative type III secretion apparatus integral membrane protein
component [Escherichia coli 1827-70]
gi|332344757|gb|AEE58091.1| Type III secretion apparatus protein EpaP [Escherichia coli UMNK88]
Length = 126
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 76/119 (63%), Gaps = 2/119 (1%)
Query: 129 AEPFWVFMRNNTREKDLSLFMDMAH--SSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
+ ++ + + ++ F + SS N +I +D+I L+P++ +SE++ +F
Sbjct: 1 MSGYKSYLIKYSEPELVNFFEKIQKVNSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFI 60
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGF I LPF+++D++++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 61 IGFYIYLPFVVVDLVISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 119
>gi|313056277|dbj|BAJ39856.1| putative type III secretion system apparatus protein VscR2 [Vibrio
mimicus]
Length = 243
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 20/201 (9%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P
Sbjct: 48 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 106
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ Q + + M N L K D + I +P
Sbjct: 107 FSQQEKQELNQDIDND-----MPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELP 161
Query: 175 -----------SFMIS---ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
F+ S +L + FE+G + + F+ ID ++A I+ +GM ML PT IS
Sbjct: 162 FNFDKEHDTFKYFVGSLIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIS 221
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 222 TPVKLAVFYFSDSWTILFKAL 242
>gi|313056229|dbj|BAJ39832.1| putative type III secretion system apparatus protein VscR2 [Vibrio
mimicus]
gi|313056247|dbj|BAJ39841.1| putative type III secretion system apparatus protein VscR2 [Vibrio
mimicus]
gi|313056259|dbj|BAJ39847.1| putative type III secretion system apparatus protein VscR2 [Vibrio
mimicus]
gi|313056271|dbj|BAJ39853.1| putative type III secretion system apparatus protein VscR2 [Vibrio
mimicus]
Length = 243
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 20/201 (9%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P
Sbjct: 48 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 106
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ Q + + M N L K D + I +P
Sbjct: 107 FSQQEKQELNQDVDND-----MPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELP 161
Query: 175 -----------SFMIS---ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
F+ S +L + FE+G + + F+ ID ++A I+ +GM ML PT IS
Sbjct: 162 FNFDKEHDTFKYFVGSLIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIS 221
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 222 TPVKLAVFYFSDSWTILFKAL 242
>gi|313056253|dbj|BAJ39844.1| putative type III secretion system apparatus protein VscR2 [Vibrio
mimicus]
Length = 243
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 20/201 (9%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P
Sbjct: 48 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQVQPGIER-VKPY 106
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ Q + + M N L K D + I +P
Sbjct: 107 FSQQEKQELNQDVDND-----MPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELP 161
Query: 175 -----------SFMIS---ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
F+ S +L + FE+G + + F+ ID ++A I+ +GM ML PT IS
Sbjct: 162 FNFDKEHDTFKYFVGSLIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIS 221
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 222 TPVKLAVFYFSDSWTILFKAL 242
>gi|28901197|ref|NP_800852.1| type III secretion system protein [Vibrio parahaemolyticus RIMD
2210633]
gi|28809710|dbj|BAC62685.1| putative Type III secretion protein Spa24 [Vibrio parahaemolyticus
RIMD 2210633]
Length = 243
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 20/201 (9%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P
Sbjct: 48 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 106
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ Q + + M N L K D + I +P
Sbjct: 107 FSQQEKQELNQDVDND-----MPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELP 161
Query: 175 -----------SFMIS---ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
F+ S +L + FE+G + + F+ ID ++A I+ +GM ML PT IS
Sbjct: 162 FNFDKEHDTFKYFVGSLIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIS 221
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 222 TPVKLAVFYFSDSWTILFKAL 242
>gi|179741467|gb|ACB86716.1| HrcR [uncultured soil bacterium]
Length = 122
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
EP F+ ++R + + F+ A + +D ++ I +P+F+++
Sbjct: 13 NMVETANLAKEPLREFLLKHSRPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAFVVN 71
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
EL +F+IGFLI LPFL+ID++++ I++AMGMMML PT+ISLP K++ F
Sbjct: 72 ELSVAFQIGFLIFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 120
>gi|320202506|gb|EFW77076.1| surface presentation of antigens protein SpaP [Escherichia coli
EC4100B]
Length = 126
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI--LIPSFMISELRRSFE 186
+ ++ + + +S F + + + D I L+P++ +SE++ +F
Sbjct: 1 MSGYKSYLIKYSEPELVSFFEKIQKVNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFI 60
Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
IGF I LPF+++D++++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+ +
Sbjct: 61 IGFYIYLPFVVVDLVISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 119
>gi|194350737|gb|ACF53799.1| HrcR [Erwinia psidii]
Length = 128
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
R +PL I A + EP FM N L+ + + +
Sbjct: 1 WHRCFRTQEKPLDMTDIASLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120
Query: 222 PFKVIFFV 229
PFK++ FV
Sbjct: 121 PFKLLLFV 128
>gi|260362756|ref|ZP_05775625.1| type III secretion system protein [Vibrio parahaemolyticus K5030]
gi|260880044|ref|ZP_05892399.1| type III secretion system protein [Vibrio parahaemolyticus AN-5034]
gi|260895161|ref|ZP_05903657.1| type III secretion system protein [Vibrio parahaemolyticus
Peru-466]
gi|308085658|gb|EFO35353.1| type III secretion system protein [Vibrio parahaemolyticus
Peru-466]
gi|308092712|gb|EFO42407.1| type III secretion system protein [Vibrio parahaemolyticus AN-5034]
gi|308111991|gb|EFO49531.1| type III secretion system protein [Vibrio parahaemolyticus K5030]
Length = 224
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 20/201 (9%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P
Sbjct: 29 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 87
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ Q + + M N L K D + I +P
Sbjct: 88 FSQQEKQELNQDVDND-----MPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELP 142
Query: 175 -----------SFMIS---ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
F+ S +L + FE+G + + F+ ID ++A I+ +GM ML PT IS
Sbjct: 143 FNFDKEHDTFKYFVGSLIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIS 202
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 203 TPVKLAVFYFSDSWTILFKAL 223
>gi|179741968|gb|ACB86731.1| HrcR [uncultured soil bacterium]
Length = 119
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 65/117 (55%)
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
Q N T I EPF F+ + + ++ F+ A + + +
Sbjct: 1 QAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIV 60
Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++PFK++ F
Sbjct: 61 LAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 117
>gi|253990947|ref|YP_003042303.1| type III secretion system protein [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782397|emb|CAQ85561.1| Putative Type III secretion flagellar biosynthesis inner membrane
protein [Photorhabdus asymbiotica]
Length = 236
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 21/207 (10%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS-----------PTL 103
I + F ++ IV +IL+ MG +PP++V+ LA + + P
Sbjct: 29 FFICFSGFVKYNIVLNILKNAMGTQQIPPSIVVNLLAALLALNSIWGDLEPGLERIKPYF 88
Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
+ + I P+++ + +++ V M + D +A + ++ ++ K
Sbjct: 89 TDTYDKSI-PIIDPISGLGLSNNELSKSGDVTMYHLVSRIDEYFPEIIARAERKSLELEK 147
Query: 164 NDHIEY-------RILIPSF--MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
+ +L P +I +L + FE+G + + F+ ID ++A ++ +GM ML
Sbjct: 148 LFTLPIAFNDGSGSVLKPLLGGLILDLYKGFELGIKLYMIFVSIDFLIAVVLSGVGMSML 207
Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENL 241
PT IS+P K+ F DGW++L L
Sbjct: 208 SPTVISIPIKLAVFYFSDGWTILFNTL 234
>gi|520562|gb|AAA67717.1| FLIP [Sinorhizobium meliloti]
Length = 136
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 70/136 (51%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
M+R+ F + + A+S D++N P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1 MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I
Sbjct: 61 TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120
Query: 120 TETTAIQRVAEPFWVF 135
+ET A+QR++EPF F
Sbjct: 121 SETDAMQRMSEPFREF 136
>gi|179741303|gb|ACB86711.1| HrcR [uncultured soil bacterium]
Length = 111
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 64/109 (58%)
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
ET I EPF F+ + + ++ F+ A + + +L P+F ++
Sbjct: 1 NETAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLT 60
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++PFK++ F
Sbjct: 61 ELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 109
>gi|194350758|gb|ACF53808.1| HrcR [Pectobacterium betavasculorum]
gi|194350760|gb|ACF53809.1| HrcR [Pectobacterium betavasculorum]
gi|194350764|gb|ACF53811.1| HrcR [Pectobacterium carotovorum subsp. brasiliensis]
gi|194350766|gb|ACF53812.1| HrcR [Pectobacterium wasabiae WPP163]
Length = 127
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 67/127 (52%)
Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
R + +++ T++ P FM +NT L + +
Sbjct: 1 WHRYLTRQAPADLSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVQMWPKEMSE 60
Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP
Sbjct: 61 NVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLP 120
Query: 223 FKVIFFV 229
K++ FV
Sbjct: 121 LKMLLFV 127
>gi|179741560|gb|ACB86719.1| HrcR [uncultured soil bacterium]
Length = 120
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 64/117 (54%)
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
Q N T I EPF F+ + + ++ F+ A + + +
Sbjct: 2 QAPSNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIV 61
Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ F
Sbjct: 62 LAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 118
>gi|179741902|gb|ACB86729.1| HrcR [uncultured soil bacterium]
Length = 133
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 100 SPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
+P +++ Q N T I EPF F+ + + ++ F+ A +
Sbjct: 1 APVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWP 60
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
+ +L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT
Sbjct: 61 AQQGKALKDTDLIVLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPT 120
Query: 218 SISLPFKVIFF 228
++++P K++ F
Sbjct: 121 NVAIPLKLLLF 131
>gi|194350756|gb|ACF53807.1| HrcR [Pectobacterium carotovorum subsp. carotovorum]
Length = 127
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 68/127 (53%)
Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
R + +++ T++ P FM +NT L + +
Sbjct: 1 WPRYSTRQVPADLSSMDNLKTSVTNGVVPLQKFMTHNTDPDILIHLQENSVRMWPKEMSD 60
Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
+ ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP
Sbjct: 61 SVNKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLP 120
Query: 223 FKVIFFV 229
K++ FV
Sbjct: 121 LKMLLFV 127
>gi|179741815|gb|ACB86727.1| HrcR [uncultured soil bacterium]
Length = 119
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 64/117 (54%)
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
Q N T I EPF F+ + + ++ F+ A + + +
Sbjct: 1 QAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIV 60
Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ F
Sbjct: 61 LAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 117
>gi|179741532|gb|ACB86718.1| HrcR [uncultured soil bacterium]
Length = 132
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 64/120 (53%)
Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
Q N T I EPF F+ + + ++ F+ A + +
Sbjct: 11 QANQAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTD 70
Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ F
Sbjct: 71 LIVLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 130
>gi|179741369|gb|ACB86713.1| HrcR [uncultured soil bacterium]
Length = 120
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 63/117 (53%)
Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
Q N T I EPF F+ + + ++ F+ A + + +
Sbjct: 2 QAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIV 61
Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ PT++++P K++ F
Sbjct: 62 LAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQGQPTNVAIPLKLLLF 118
>gi|194350721|gb|ACF53791.1| HrcR [Erwinia amylovora]
Length = 127
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 69/127 (54%)
Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
R + +++ T++ P FM +NT L + + +
Sbjct: 1 WPRYSTRQVPADLSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMLD 60
Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
+ ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP
Sbjct: 61 SVNKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLP 120
Query: 223 FKVIFFV 229
K++ FV
Sbjct: 121 LKMLLFV 127
>gi|254285292|ref|ZP_04960257.1| Flagellar biosynthesis pathway, component FliP [Vibrio cholerae
AM-19226]
gi|71480611|gb|AAZ32233.1| VcsR2 [Vibrio cholerae non-O1/non-O139]
gi|150424564|gb|EDN16500.1| Flagellar biosynthesis pathway, component FliP [Vibrio cholerae
AM-19226]
Length = 224
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I T F ++ IV +I++ +G +PP +V+ LA M + P + IE I+P
Sbjct: 29 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKPY 87
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ Q + + + + N L K D + I +P
Sbjct: 88 FSQQEKQELNQEINND-----LPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLTAIIELP 142
Query: 175 -----------SFMIS---ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
F+ S +L + FE+G + + F+ ID ++A I+ +GM ML PT IS
Sbjct: 143 FNFDKEHDTFKYFIGSLIYDLYQGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIS 202
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 203 TPVKLAVFYFSDSWTILFKAL 223
>gi|229515154|ref|ZP_04404614.1| surface presentation of antigens protein SpaP [Vibrio cholerae TMA
21]
gi|229347859|gb|EEO12818.1| surface presentation of antigens protein SpaP [Vibrio cholerae TMA
21]
Length = 228
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I T F ++ IV +I++ +G +PP +V+ LA M + P + IE I+P
Sbjct: 33 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKPY 91
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ Q + + + + N L K D + I +P
Sbjct: 92 FSQQEKQELNQEINND-----LPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLTAIIELP 146
Query: 175 -----------SFMIS---ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
F+ S +L + FE+G + + F+ ID ++A I+ +GM ML PT IS
Sbjct: 147 FNFDKEHDTFKYFIGSLIYDLYQGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIS 206
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 207 TPVKLAVFYFSDSWTILFKAL 227
>gi|229529208|ref|ZP_04418598.1| surface presentation of antigens protein SpaP [Vibrio cholerae
12129(1)]
gi|229332982|gb|EEN98468.1| surface presentation of antigens protein SpaP [Vibrio cholerae
12129(1)]
Length = 228
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I T F ++ IV +I++ +G +PP +V+ LA M + P + IE I+P
Sbjct: 33 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKPY 91
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ Q + + + + N L K D + I +P
Sbjct: 92 FSQQKKQELNQEINND-----LPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLTAIIELP 146
Query: 175 -----------SFMIS---ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
F+ S +L + FE+G + + F+ ID ++A ++ +GM ML PT IS
Sbjct: 147 FNFDKEHDTFKYFIGSLIYDLYQGFELGLKLYIVFVSIDFLIAVVLSGVGMTMLSPTVIS 206
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 207 TPVKLAVFYFSDSWTILFKAL 227
>gi|179741043|gb|ACB86703.1| HrcR [Burkholderia phenazinium]
Length = 134
Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMR 137
VPPN+VI +A+ ++ YVM+P ++ + M Q T+ EPF F++
Sbjct: 1 QVPPNMVINGIAVLVSLYVMAPIGMQAAQSMQGQAMAPQPTQALIQMFSAAREPFRGFLK 60
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
+ +E++ FM A + +L P+F +SEL +F+IGFL+ + F++
Sbjct: 61 AHAKEREKRFFMHSASIVWPKEAANNLHDTDLIVLAPAFTLSELADAFKIGFLLYIAFIV 120
Query: 198 IDMIVATIVMAMGM 211
+D+I+A +++AMG+
Sbjct: 121 VDLIIANVLLAMGL 134
>gi|153836107|ref|ZP_01988774.1| VcsR2 [Vibrio parahaemolyticus AQ3810]
gi|149750861|gb|EDM61606.1| VcsR2 [Vibrio parahaemolyticus AQ3810]
Length = 224
Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 20/201 (9%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P
Sbjct: 29 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 87
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
+ Q + + M N L K D + I +
Sbjct: 88 FSQQEKQELNRDVDND-----MPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELS 142
Query: 175 -----------SFMIS---ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
F+ S +L + FE+G + + F+ ID ++A I+ +GM ML PT IS
Sbjct: 143 FNFDKEHDTFKYFVGSLIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIS 202
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 203 TPVKLAVFYFSDSWTILFKAL 223
>gi|179742649|gb|ACB86742.1| HrcR [uncultured soil bacterium]
Length = 145
Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 75/140 (53%), Gaps = 5/140 (3%)
Query: 89 SLALFMTFYVMSPTLDRS---IEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREK 143
+A+ ++ Y+++P + IE Q IT+T + EP+ F+ + + +
Sbjct: 1 GIAIIVSVYILAPIGFAAMHGIETSQQNGQGGNITQTVSAGLIAAGEPYRAFLAAHAQSR 60
Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
+ F+ A + + +L P+F ++EL +F+IGFL+ + F+++D+++A
Sbjct: 61 ERQFFLRSAAALWPPQQARALKDTDLIVLAPAFTMTELTDAFKIGFLLYIGFIVVDLVIA 120
Query: 204 TIVMAMGMMMLPPTSISLPF 223
++MAMG+ + PT++++P
Sbjct: 121 NVLMAMGLNQVQPTNVAIPL 140
>gi|330903542|gb|EGH34114.1| type III secretion system protein YscR [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 117
Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 74/117 (63%)
Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
EP FM NT ++ ++ + + + IP+F++SEL+ FEIGF
Sbjct: 1 EPLQRFMTRNTDPDVVAHLLENTQRMWPKEMADQASKNDLLLAIPAFVLSELQAGFEIGF 60
Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
LI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FVL+ GWS L+++L S++
Sbjct: 61 LIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 117
>gi|330985216|gb|EGH83319.1| type III secretion system protein YscR [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 93
Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 60/90 (66%)
Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
+ +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+
Sbjct: 2 WSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVS 61
Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PT IS+P K+ FV + GWS L+ L+ S+
Sbjct: 62 PTLISIPLKIFLFVALSGWSRLMHGLILSY 91
>gi|308126175|ref|ZP_05908255.2| FliP family protein [Vibrio parahaemolyticus AQ4037]
gi|308107367|gb|EFO44907.1| FliP family protein [Vibrio parahaemolyticus AQ4037]
Length = 278
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 15/201 (7%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I + F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P
Sbjct: 78 FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPY 136
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
++Q ++ A + N L + T K + + I IP
Sbjct: 137 FSSQHRLEDSLDTSASVSSDELPKNVTMFTLVSNLFEFFPELLKTAEDKTNKLTSLIDIP 196
Query: 175 --------------SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
+I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS
Sbjct: 197 LNFDEENQTFKFFIGSLIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIS 256
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 257 TPVKLAVFYFSDSWTILFKAL 277
>gi|19880031|gb|AAM00229.1|AF358871_1 SctR [Burkholderia pseudomallei]
Length = 133
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTRE 142
+V+ +A+ ++ YVM+P ++ + + + +Q ++ A+ EPF F+ +T E
Sbjct: 1 MVLNGIAILVSLYVMAPIGMQAAKALDEQQLASQSSQAIIQALGSAREPFRSFLEKHTPE 60
Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
++ F+ A + + + + +L P+F +SEL +F+IGFL+ + F+I+D+++
Sbjct: 61 REKRFFIRSASVIWPKEEASLLNERDLIVLAPAFALSELTDAFKIGFLLYIVFIIVDLVI 120
Query: 203 ATIVMAMGMMML 214
A +++A+G+ +
Sbjct: 121 ANVLLALGLNQI 132
>gi|179742161|gb|ACB86735.1| HrcR [uncultured soil bacterium]
Length = 112
Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 62/107 (57%)
Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
+ V EP FM NT ++ +D + + + +P+F++SEL
Sbjct: 4 QASANTVIEPLQRFMTRNTDPDVIAHLLDNTQRMWPKDMADQASKSDLLLAVPAFVLSEL 63
Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
+ F+IGFLI +PF++ID+I + +++A+GM ++ P +ISLPFK++ F
Sbjct: 64 QAGFQIGFLIYIPFIVIDLIDSNLLLALGMQIVFPMTISLPFKLLLF 110
>gi|328469627|gb|EGF40563.1| type III secretion system protein YscR [Vibrio parahaemolyticus
10329]
Length = 229
Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 15/201 (7%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I + F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P
Sbjct: 29 FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPY 87
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
++Q +++ A + N L + K + + I IP
Sbjct: 88 FSSQHRLEDSLEPSASVSSEELPKNVTMFTLVSNLFEFFPEVLKIAEDKTNKLTSEIDIP 147
Query: 175 SF--------------MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
+I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS
Sbjct: 148 LHFDEENQTFKFFIGSLIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIS 207
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 208 TPVKLAVFYFSDSWTILFKAL 228
>gi|262274290|ref|ZP_06052101.1| surface presentation of antigens protein SpaP [Grimontia hollisae
CIP 101886]
gi|262220853|gb|EEY72167.1| surface presentation of antigens protein SpaP [Grimontia hollisae
CIP 101886]
Length = 224
Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/199 (23%), Positives = 83/199 (41%), Gaps = 20/199 (10%)
Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
I + F ++ IV +I++ +G +PP +V+ LA M + P L IE ++P +
Sbjct: 31 ICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSIWPQLQPGIER-VEPYFS 89
Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP-- 174
+ + + + L K + + I +P
Sbjct: 90 -----QQTQEELNKQIDQDLPKGVTMYTLVSHWAEFFPEVLENAKQKTEKLTEVITLPFN 144
Query: 175 ---------SFMIS---ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
F+ S +L + FE+G + + F+ ID ++A I+ +GM ML PT IS P
Sbjct: 145 FDQEHDTFKYFIGSLIWDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTP 204
Query: 223 FKVIFFVLIDGWSLLVENL 241
K+ F D W++L + L
Sbjct: 205 VKLAVFYFSDSWTILFKAL 223
>gi|313056241|dbj|BAJ39838.1| putative type III secretion system apparatus protein VscR2 [Vibrio
mimicus]
Length = 229
Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 15/201 (7%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I + F ++ IV +I++ +G +PP +V+ LA M + P + +E ++P
Sbjct: 29 FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGLER-VKPY 87
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
++Q ++ A + N L + T K + + I IP
Sbjct: 88 FSSQHRLEDSLDTSASVSSEELPKNVTMFTLVSNLFDFFPELLKTAEDKTNKLTSLIEIP 147
Query: 175 --------------SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
+I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS
Sbjct: 148 LNFDEEDQTFKFFIGSLIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIS 207
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 208 TPVKLAVFYFSDSWTILFKAL 228
>gi|194350731|gb|ACF53796.1| HrcR [Brenneria lupinicola]
Length = 125
Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
R +PL IT A + EP FM N L+ + + +
Sbjct: 1 WHRCFRTQEKPLDMTDITSLQASVTYGQEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120
Query: 222 PFKVI 226
P ++
Sbjct: 121 PLPLL 125
>gi|207109546|ref|ZP_03243708.1| flagellar biosynthesis protein FliP [Helicobacter pylori
HPKX_438_CA4C1]
Length = 99
Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 51/96 (53%), Positives = 71/96 (73%)
Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
+ D + +LIP+FMISEL+ +F+IGFL+ LPFL+IDM++++I+MAM
Sbjct: 1 RFFFRIRNLPNPKTPDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAM 60
Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GMMMLPP ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 61 GMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 96
>gi|194350762|gb|ACF53810.1| HrcR [Pectobacterium carotovorum subsp. brasiliensis]
Length = 121
Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 62/121 (51%)
Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
R + +++ T++ P FM +NT L + +
Sbjct: 1 WHRYLTRQAPADLSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVQMWPKEMSE 60
Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP
Sbjct: 61 NVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLP 120
Query: 223 F 223
Sbjct: 121 L 121
>gi|221271465|dbj|BAH15017.1| putative type III secretion system apparatus protein VscR2 [Vibrio
parahaemolyticus]
Length = 229
Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 15/201 (7%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I + F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P
Sbjct: 29 FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPY 87
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
++Q ++ A + N L + T K + + I IP
Sbjct: 88 FSSQYRLEDSLDPSASVSSEELPKNVTMFTLVSNLFEFFPELLKTAEDKTNKLTSLIDIP 147
Query: 175 --------------SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
+I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS
Sbjct: 148 LNFDEENQTFKFFIGSLIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIS 207
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 208 TPVKLAVFYFSDSWTILFKAL 228
>gi|194350768|gb|ACF53813.1| HrcR [Pectobacterium atrosepticum SCRI1043]
Length = 121
Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%)
Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
R + +++ T++ P FM +NT L + +
Sbjct: 1 WPRYSTRQVPADLSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSD 60
Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
+ ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP
Sbjct: 61 SVNKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLP 120
>gi|153212098|ref|ZP_01947915.1| VcsR2 [Vibrio cholerae 1587]
gi|153827997|ref|ZP_01980664.1| VcsR2 [Vibrio cholerae 623-39]
gi|124116894|gb|EAY35714.1| VcsR2 [Vibrio cholerae 1587]
gi|148876578|gb|EDL74713.1| VcsR2 [Vibrio cholerae 623-39]
Length = 229
Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 15/201 (7%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I + F ++ IV +I++ +G +PP +V+ LA M + P + +E ++P
Sbjct: 29 FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGLER-VKPY 87
Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
++Q +I A + N L + K + + I IP
Sbjct: 88 FSSQHRLEDSIDTSASISSEELPKNVTMFTLVSNLFEFFPELLKNAEDKTNKLTSLIEIP 147
Query: 175 --------------SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
+I +L + FE+G + + F+ ID ++A I+ +G+ ML PT IS
Sbjct: 148 LSFDEENQTFKFFIGSLIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGITMLSPTVIS 207
Query: 221 LPFKVIFFVLIDGWSLLVENL 241
P K+ F D W++L + L
Sbjct: 208 TPVKLAVFYFSDSWTILFKAL 228
>gi|226326424|ref|ZP_03801942.1| hypothetical protein PROPEN_00272 [Proteus penneri ATCC 35198]
gi|225205207|gb|EEG87561.1| hypothetical protein PROPEN_00272 [Proteus penneri ATCC 35198]
Length = 105
Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 149 MDMAHSSHRNTDITKND-HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
M A + + + L+P++ +SE++ +F IGF + LPF++ID++V+ I++
Sbjct: 1 MKKAQGNRPESHGDSENIESSLLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILL 60
Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
A+GMMM+ P ++S+P K+I F+ +DGW+LL + L+ ++
Sbjct: 61 ALGMMMMSPITLSVPLKLILFIAMDGWTLLSKGLINQYL 99
>gi|213419213|ref|ZP_03352279.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 120
Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 64/89 (71%)
Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P
Sbjct: 28 KRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPV 87
Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+IS P K++ FV +DGW+LL + L+ ++
Sbjct: 88 TISTPIKLVLFVALDGWTLLSKGLILQYM 116
>gi|662864|gb|AAA79756.1| flagellar protein [Pseudomonas aeruginosa]
Length = 141
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 57/106 (53%)
Query: 24 HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
V + ++ I T LS P ++++T F R IIVFSILR +G+ S P
Sbjct: 35 ITVTTNGQGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPS 94
Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
N V++ LALF+T +VM+P D+ +QP +N QI A+Q+
Sbjct: 95 NQVLVGLALFLTMFVMAPVFDKINSQALQPYLNEQIPAQEALQKAE 140
>gi|194350749|gb|ACF53805.1| HrcR [Brenneria nigrifluens]
Length = 128
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Query: 103 LDRSIEMGIQPLMNNQIT-ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
R PL N I+ ++ + P FM NT L+ + + +
Sbjct: 1 WRRCFRTQENPLNMNDISVLQESVTQGLAPLQTFMSRNTDPDILTHLQENSLRMWPPSLS 60
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120
Query: 222 PFKVIFFV 229
P K++ FV
Sbjct: 121 PLKLLLFV 128
>gi|194350733|gb|ACF53797.1| HrcR [Brenneria lupinicola]
Length = 128
Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
R +PL IT A + EP FM N L+ + + +
Sbjct: 1 WHRCFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120
Query: 222 PFKVIFFV 229
P K++ FV
Sbjct: 121 PLKLLLFV 128
>gi|194350725|gb|ACF53793.1| HrcR [Erwinia mallotivora]
Length = 128
Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
R +PL IT A + EP FM N L+ + + +
Sbjct: 1 WHRYFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLRMWPASLS 60
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120
Query: 222 PFKVIFFV 229
P K++ FV
Sbjct: 121 PLKLLLFV 128
>gi|194350745|gb|ACF53803.1| HrcR [Brenneria quercina]
gi|194350747|gb|ACF53804.1| HrcR [Brenneria nigrifluens]
Length = 128
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/110 (36%), Positives = 64/110 (58%)
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
T T EP FM NT L+ + + K ++IP+F++S
Sbjct: 19 TLETTATHGIEPLQKFMSRNTDPDILTHLHENSIRMWPPAMSEKATTDNILLVIPAFVLS 78
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
EL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP K++ FV
Sbjct: 79 ELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPLKLLLFV 128
>gi|304412098|ref|ZP_07393708.1| type III secretion system inner membrane P protein [Shewanella
baltica OS183]
gi|307305993|ref|ZP_07585739.1| type III secretion system inner membrane P protein [Shewanella
baltica BA175]
gi|304349648|gb|EFM14056.1| type III secretion system inner membrane P protein [Shewanella
baltica OS183]
gi|306911486|gb|EFN41912.1| type III secretion system inner membrane P protein [Shewanella
baltica BA175]
Length = 231
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 17/203 (8%)
Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
I + + ++ IV +I++ +G +PP +V+ LA M + P + +E ++P
Sbjct: 29 FFICFSGYVKYNIVLNIIKNAVGTQQIPPTIVVNLLAALMALNSIWPDIKPGLER-VKPY 87
Query: 115 MNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
QI + + + F L + K + + I
Sbjct: 88 FIEQINGEINPDVLQSSSLFEDKKPEQVTMYYLVSNVFEFFPELLARAQRKTNELTEIID 147
Query: 173 IP--------------SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
IP +I +L + FE G + + F+ ID ++A I+ +GM ML PT
Sbjct: 148 IPLNFDSGSDTLKYFLGNLILDLYQGFEFGLKLYMIFVSIDFLIAVILSGVGMTMLSPTV 207
Query: 219 ISLPFKVIFFVLIDGWSLLVENL 241
IS P K+ F D W++L L
Sbjct: 208 ISTPVKLAVFYFSDSWTILFRAL 230
>gi|194350741|gb|ACF53801.1| HrcR [Erwinia tracheiphila]
Length = 128
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 63/110 (57%)
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
T T EP FM NT L+ + + K ++IP+F++S
Sbjct: 19 TLETTATHGIEPLQKFMSRNTDPDILTHLHENSIRMWPAAMSEKATTDNILLVIPAFVLS 78
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
EL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++ LP K++ FV
Sbjct: 79 ELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLWLPLKLLLFV 128
>gi|194350739|gb|ACF53800.1| HrcR [Erwinia tracheiphila]
gi|194350743|gb|ACF53802.1| HrcR [Brenneria quercina]
Length = 128
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/110 (36%), Positives = 64/110 (58%)
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
T T EP FM NT L+ + + K ++IP+F++S
Sbjct: 19 TLETTATHGIEPLQKFMSRNTDPDILTHLHENSIRMWPAAMSEKATTDNILLVIPAFVLS 78
Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
EL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP K++ FV
Sbjct: 79 ELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPLKLLLFV 128
>gi|194350751|gb|ACF53806.1| HrcR [Brenneria salicis]
Length = 128
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
R +PL IT A + EP FM N L+ + + +
Sbjct: 1 WHRCFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM + P ++SL
Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQRVAPXTLSL 120
Query: 222 PFKVIFFV 229
P K++ FV
Sbjct: 121 PLKLLLFV 128
>gi|194350723|gb|ACF53792.1| HrcR [Erwinia mallotivora]
Length = 127
Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
R +PL IT A + EP FM N L+ + + +
Sbjct: 1 WHRYFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLRMWPASLS 60
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A GM M+ P +
Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVMLARGMQMVAPQT 117
>gi|194350727|gb|ACF53794.1| HrcR [Erwinia rhapontici]
gi|194350729|gb|ACF53795.1| HrcR [Erwinia rhapontici]
gi|194350735|gb|ACF53798.1| HrcR [Erwinia psidii]
gi|194350771|gb|ACF53814.1| HrcR [Erwinia chrysanthemi]
Length = 128
Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
R +PL IT A + EP FM N L+ + + +
Sbjct: 1 WLRCFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120
Query: 222 PFKVIFFV 229
P K++ FV
Sbjct: 121 PLKLLLFV 128
>gi|323163025|gb|EFZ48858.1| harpin secretion protein hrpW [Escherichia coli E128010]
Length = 149
Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T
Sbjct: 5 SQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTM 64
Query: 97 YVMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
++MSP + + + Q +N + +++ P+ F+ NT ++++ F A
Sbjct: 65 FIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFERAAQK 124
Query: 155 SHRNTDI 161
N I
Sbjct: 125 KLGNETI 131
>gi|75906098|gb|ABA29440.1| putative type III secretion system protein [Candidatus Hamiltonella
defensa]
Length = 97
Score = 83.1 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/96 (41%), Positives = 64/96 (66%)
Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
DM ++ K IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AM
Sbjct: 1 DMIKNNWPKKYRDKVASDSLLILMPAFTVSQLIEAFKIGLLLYLPFVAIDLIVSNILLAM 60
Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GMMM+ P +ISLPFK++ F+L+ GW +++ L S+
Sbjct: 61 GMMMMSPMTISLPFKILIFLLVGGWDMILGQLAGSY 96
>gi|179741848|gb|ACB86728.1| HrcR [uncultured soil bacterium]
Length = 93
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 53/88 (60%)
Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
+ + ++ F+ A + + +L P+F ++EL +F+IGFL+ + F++
Sbjct: 1 AHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYIGFIV 60
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKV 225
+D+++A ++MAMG+ + PT++++P K+
Sbjct: 61 VDLVIANVLMAMGLNQVQPTNVAIPLKL 88
>gi|207110871|ref|ZP_03245033.1| flagellar biosynthesis protein FliP [Helicobacter pylori
HPKX_438_CA4C1]
Length = 78
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM
Sbjct: 1 TQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFML 60
Query: 138 NNTREKDLSLFMDMAHSS 155
NTREKDL+LF + +
Sbjct: 61 KNTREKDLALFFRIRNLP 78
>gi|179741285|gb|ACB86710.1| HrcR [uncultured soil bacterium]
Length = 88
Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 41/84 (48%)
Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
+ EPF F+ + + ++ F+ A + + +L P+F ++
Sbjct: 5 NVREGMAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLT 64
Query: 180 ELRRSFEIGFLIILPFLIIDMIVA 203
EL +F+IGFL+ + F+++D+ +A
Sbjct: 65 ELTDAFKIGFLLYIGFIVVDLEIA 88
>gi|226326425|ref|ZP_03801943.1| hypothetical protein PROPEN_00273 [Proteus penneri ATCC 35198]
gi|225205208|gb|EEG87562.1| hypothetical protein PROPEN_00273 [Proteus penneri ATCC 35198]
Length = 121
Score = 72.7 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
++AP ++ TC+ +F IV + R +G+ VP N+V+ ++AL M +VM+P
Sbjct: 7 LILTLAFATLAPFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAVALMMALFVMTP 66
Query: 102 TLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
S + + ++ + + + ++ + + L F
Sbjct: 67 IAKNSYQYLVDEPISITSPESLERFSDEALGEYKRYLYRYSEPELLEFFEKSTRK 121
>gi|255523691|ref|ZP_05390657.1| type III secretion system inner membrane P protein [Clostridium
carboxidivorans P7]
gi|255512560|gb|EET88834.1| type III secretion system inner membrane P protein [Clostridium
carboxidivorans P7]
Length = 70
Score = 71.9 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/69 (59%), Positives = 60/69 (86%)
Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
MISEL+ +F IGF++ +PF+IID++VA+++M+MGM MLPP +SLPFK++ FV++DGW L
Sbjct: 1 MISELKTAFMIGFMLYIPFMIIDLVVASVLMSMGMFMLPPAMVSLPFKLLLFVMVDGWYL 60
Query: 237 LVENLVKSF 245
LV++LV SF
Sbjct: 61 LVKSLVSSF 69
>gi|179741334|gb|ACB86712.1| HrcR [uncultured soil bacterium]
Length = 72
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 47/70 (67%)
Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
+ +L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT+
Sbjct: 1 QQEKALKDTDLIVLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTN 60
Query: 219 ISLPFKVIFF 228
+++P K++ F
Sbjct: 61 VAIPLKLLLF 70
>gi|330985215|gb|EGH83318.1| type III secretion system protein YscR [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 133
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 2/132 (1%)
Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL
Sbjct: 2 NGYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIAL 61
Query: 93 FMTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
++ YV +P + G + N + P + E + F+
Sbjct: 62 ILSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQ 121
Query: 151 MAHSSHRNTDIT 162
+
Sbjct: 122 ATETIWSPEARA 133
>gi|323267197|gb|EGA50682.1| type III secretion system protein YscR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
Length = 109
Score = 70.0 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S+ ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL
Sbjct: 2 SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALV 61
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ-RVAEPFWVFMRN 138
++ ++M PTL E + T+ + P+ F++
Sbjct: 62 LSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQK 107
>gi|255023681|ref|ZP_05295667.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
J1-208]
Length = 118
Score = 68.9 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
++ + +F V A+S L + D V F + T+LS++ +++M T
Sbjct: 15 VVIFAISLVFFWPGVNVHAESWLDSLGVNGTDG--VNSSVALFVLVTVLSLSASIVLMFT 72
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
F IIV + R G+G ++PPN V++ LALF++ ++M P +
Sbjct: 73 HFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAW 118
>gi|323178894|gb|EFZ64470.1| harpin secretion protein hrpW [Escherichia coli 1180]
Length = 118
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
+ + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T
Sbjct: 9 SQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTM 68
Query: 97 YVMSPTLDRSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRN 138
++MSP + + + Q +N + +++ P+ F+
Sbjct: 69 FIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEK 112
>gi|213419313|ref|ZP_03352379.1| surface presentation of antigens protein SpaP [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 100
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
+ + ++ P ++ TCF +F IVF ++R +G+ +P N+ + S+AL ++ +VM
Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSMFVM 64
Query: 100 SPTLDRSI 107
P + +
Sbjct: 65 WPIMHDAY 72
>gi|218679632|ref|ZP_03527529.1| flagellar biosynthesis protein FliP [Rhizobium etli CIAT 894]
Length = 105
Score = 65.8 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 55/99 (55%), Positives = 75/99 (75%)
Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
+ F A +V PEL A+ D++N+P D S++ WI+RTFG+ T+LS+AP +LIMVT
Sbjct: 2 IRLIVFLAAMMVVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMVT 61
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
FPRFII FSILR+GMG+ S P N++++SL+LFMTFYVM
Sbjct: 62 SFPRFIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVM 100
>gi|323178895|gb|EFZ64471.1| harpin secretion protein hrpW [Escherichia coli 1180]
Length = 68
Score = 65.8 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 51/65 (78%)
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
+ +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +IS+PFK++ F+L+ GW L
Sbjct: 1 MGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKL 60
Query: 238 VENLV 242
E L+
Sbjct: 61 FEFLL 65
>gi|323267198|gb|EGA50683.1| type III secretion system protein YscR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
Length = 69
Score = 64.6 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 53/68 (77%)
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
+S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P +ISLPFK++ F+L GW L
Sbjct: 1 MSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLT 60
Query: 238 VENLVKSF 245
+ LV+SF
Sbjct: 61 LAQLVQSF 68
>gi|145207712|emb|CAJ90702.1| putative RhcR protein [Bradyrhizobium japonicum]
Length = 57
Score = 62.7 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 40/52 (76%)
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
PF+ ID+IV TI+MAMGM M+ PT IS+PFK+ FV IDGWS L+ LV S+
Sbjct: 1 PFITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52
>gi|291084579|ref|ZP_06539401.2| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 60
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
+LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+ + A+
Sbjct: 1 MLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEALDKGAQ 60
>gi|119391678|emb|CAJ46463.1| RhcR protein [Bradyrhizobium japonicum]
gi|145207704|emb|CAJ90696.1| putative RhcR protein [Bradyrhizobium sp. MSDJ 5327]
gi|145207708|emb|CAJ90699.1| putative RhcR protein [Bradyrhizobium japonicum]
Length = 57
Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/52 (59%), Positives = 40/52 (76%)
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
P ++ID+IV TI+MAMGM M+ PT IS+PFK+ FV IDGWS L+ LV S+
Sbjct: 1 PLIVIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52
>gi|167948772|ref|ZP_02535846.1| flagellar biosynthesis protein FliP [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 109
Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
V + T ++ T LS+ P L+M+T F R IIV +ILR +G P
Sbjct: 5 TVTQDAGGVQTYTLSIQVLLFMTALSLIPGALMMMTSFARIIIVLAILRQALGTQEHPAT 64
>gi|119391682|emb|CAJ46466.1| RhcR protein [Bradyrhizobium liaoningense]
gi|145207716|emb|CAJ90705.1| putative RhcR protein [Bradyrhizobium japonicum]
Length = 57
Score = 60.0 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/52 (59%), Positives = 39/52 (75%)
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
P + ID+IV TI+MAMGM M+ PT IS+PFK+ FV IDGWS L+ LV S+
Sbjct: 1 PLITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52
>gi|15646198|ref|NP_207478.1| flagellar biosynthesis protein [Helicobacter pylori 26695]
gi|7464067|pir||D64605 flagellar biosynthesis protein - Helicobacter pylori (strain
26695)
Length = 105
Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P D + + T+L +AP L++++T
Sbjct: 6 FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65
Query: 62 FPRFIIVFSILRTGMGMGSVPP 83
F R I+VFS LRT +G PP
Sbjct: 66 FTRLIVVFSFLRTALGTQQTPP 87
>gi|218670413|ref|ZP_03520084.1| flagellar biosynthesis protein FliP [Rhizobium etli GR56]
Length = 84
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 46/84 (54%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
MIR+ F A + PEL A+ D++N+P D S++ WI+RTFG+ TILS+AP +LIMV
Sbjct: 1 MIRFIIFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60
Query: 60 TCFPRFIIVFSILRTGMGMGSVPP 83
T FPRFII FSILR+G+G+ S P
Sbjct: 61 TSFPRFIIAFSILRSGIGLSSTPS 84
>gi|213028920|ref|ZP_03343367.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 125
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 34/63 (53%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S + + + ++ P ++ TCF +F IVF ++R +G+ +P N+ + S+AL
Sbjct: 63 SGNGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALL 122
Query: 94 MTF 96
++
Sbjct: 123 LSC 125
>gi|121592127|gb|ABD36816.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens]
Length = 55
Score = 55.4 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/50 (62%), Positives = 42/50 (84%)
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
LIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF
Sbjct: 1 LIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLASSF 50
>gi|207110048|ref|ZP_03244210.1| flagellar biosynthesis protein FliP [Helicobacter pylori
HPKX_438_CA4C1]
Length = 104
Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
+ L+ P + A S++ +N P D + + T+L +AP L++++T
Sbjct: 24 FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 83
Query: 62 FPRFIIVFSILRTGMGMGSVP 82
F R I+VFS LRT +G P
Sbjct: 84 FTRLIVVFSFLRTALGTQQTP 104
>gi|167948773|ref|ZP_02535847.1| flagellar biosynthetic protein FliP [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 153
Score = 54.2 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS-FMISELRRSFEI 187
FM TRE DL++F + + + + +L+P+ F SEL+ F+I
Sbjct: 1 MREFMLAQTREDDLAMFARIGNYRR---AAESRRMVPFSLLLPALFATSELKTGFQI 54
>gi|51587274|emb|CAE53660.1| putative HrcR [Pseudomonas fluorescens bv. V]
gi|51587278|emb|CAE53663.1| putative HrcR [Pseudomonas fluorescens bv. V]
gi|51587286|emb|CAE53669.1| putative HrcR protein [Pseudomonas fluorescens bv. V]
gi|51587290|emb|CAE53672.1| putative HrcR protein [Pseudomonas fluorescens]
gi|51587314|emb|CAE53690.1| putative HrcR [Pseudomonas fluorescens bv. V]
Length = 53
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 43/53 (81%)
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
PF++ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++
Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 53
>gi|51587318|emb|CAE53693.1| putative HrcR [Pseudomonas fluorescens]
gi|321399617|emb|CBJ44628.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTE-48-102]
gi|321399621|emb|CBJ44631.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTE-48-104]
gi|321399641|emb|CBJ44646.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTR-25-521]
gi|321399645|emb|CBJ44649.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTR-48-521]
gi|321399657|emb|CBJ44658.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTR-J5-521]
gi|321399661|emb|CBJ44661.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTR-J5-522]
gi|321399665|emb|CBJ44664.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTR-J5-621]
gi|321399669|emb|CBJ44667.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTR-J5-622]
gi|321399673|emb|CBJ44670.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTR-J5-623]
Length = 53
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 43/53 (81%)
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++
Sbjct: 1 PFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 53
>gi|321399649|emb|CBJ44652.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTR-48-522]
Length = 55
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 44/54 (81%)
Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++
Sbjct: 2 IPFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 55
>gi|254510638|ref|ZP_05122705.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
KLH11]
gi|221534349|gb|EEE37337.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
KLH11]
Length = 101
Score = 51.9 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
+++ SIS ++ + T+LS+AP L IM+TCFP I V +ILR G
Sbjct: 22 LSLSLGEGGSISARTIQLILLITVLSLAPGLAIMITCFPFLITVLAILRQG 72
>gi|213615826|ref|ZP_03371652.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 73
Score = 51.9 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
S+ ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + AL
Sbjct: 2 SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV 61
Query: 94 MTFYVMSPTL 103
++ ++M PTL
Sbjct: 62 LSLFIMGPTL 71
>gi|51587262|emb|CAE53651.1| putative HrcR protein [Pseudomonas blatchfordae]
Length = 53
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 42/53 (79%)
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
PF++ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+ +L S++
Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPPKLLLFVMVSGWSRLLVSLFLSYL 53
>gi|238799426|ref|ZP_04642855.1| Flagellar biosynthetic protein FliP [Yersinia mollaretii ATCC
43969]
gi|238716730|gb|EEQ08617.1| Flagellar biosynthetic protein FliP [Yersinia mollaretii ATCC
43969]
Length = 46
Score = 49.6 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/43 (62%), Positives = 38/43 (88%)
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
A+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 2 ASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 44
>gi|284810343|gb|ADB95953.1| putative HrcR [Pseudomonas cichorii]
gi|284810347|gb|ADB95956.1| putative HrcR [Pseudomonas cichorii]
gi|284810351|gb|ADB95959.1| putative HrcR [Pseudomonas cichorii]
gi|284810355|gb|ADB95962.1| putative HrcR [Pseudomonas cichorii]
gi|284810359|gb|ADB95965.1| putative HrcR [Pseudomonas cichorii]
gi|284810363|gb|ADB95968.1| putative HrcR [Pseudomonas cichorii]
gi|284810367|gb|ADB95971.1| putative HrcR [Pseudomonas cichorii]
gi|284810371|gb|ADB95974.1| putative HrcR [Pseudomonas cichorii]
gi|284810375|gb|ADB95977.1| putative HrcR [Pseudomonas cichorii]
gi|284810379|gb|ADB95980.1| putative HrcR [Pseudomonas cichorii]
gi|284810403|gb|ADB95998.1| putative HrcR [Pseudomonas cichorii]
Length = 44
Score = 49.6 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 34/44 (77%)
Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ I++A+GM M+ P +ISLP K++ FVL+DGW+ L++ L S++
Sbjct: 1 SNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLLDGLFYSYM 44
>gi|51587310|emb|CAE53687.1| putative HrcR [Pseudomonas fluorescens bv. III]
gi|321399613|emb|CBJ44625.1| putative type III secretion system protein HrcR [Pseudomonas sp.
MTE-25-201]
gi|321399633|emb|CBJ44640.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTE-J5-708]
Length = 51
Score = 49.2 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 41/51 (80%)
Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++
Sbjct: 1 IVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 51
>gi|51587294|emb|CAE53675.1| putative HrcR protein [Pseudomonas fluorescens bv. I]
gi|321399637|emb|CBJ44643.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTR-25-321]
Length = 50
Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 40/50 (80%)
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++
Sbjct: 1 VIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 50
>gi|51587282|emb|CAE53666.1| putative HrcR protein [Pseudomonas fluorescens bv. I]
Length = 49
Score = 48.8 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 39/49 (79%)
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++
Sbjct: 1 IDLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 49
>gi|51587306|emb|CAE53684.1| putative HrcR [Pseudomonas fluorescens bv. II]
Length = 49
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 39/49 (79%)
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++
Sbjct: 1 IDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 49
>gi|289805086|ref|ZP_06535715.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 62
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + AL ++ ++M
Sbjct: 1 MIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMG 59
>gi|51587298|emb|CAE53678.1| putative HrcR protein [Pseudomonas fluorescens bv. V]
Length = 48
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 38/48 (79%)
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
D+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++
Sbjct: 1 DLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 48
>gi|51587254|emb|CAE53645.1| putative HrcR protein [Pseudomonas salomonii]
Length = 50
Score = 47.3 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 39/50 (78%)
Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ID+IV+ +++A+GM M+ P +ISLP K++ V++ GWS L+++L S++
Sbjct: 1 VIDLIVSNLLLALGMQMVSPMTISLPLKLLLSVMVSGWSRLLDSLFFSYL 50
>gi|284810387|gb|ADB95986.1| putative HrcR [Pseudomonas cichorii]
gi|284810391|gb|ADB95989.1| putative HrcR [Pseudomonas cichorii]
gi|284810399|gb|ADB95995.1| putative HrcR [Pseudomonas cichorii]
Length = 40
Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 31/40 (77%)
Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+A+GM M+ P +ISLP K++ FVL+DGW+ L++ L S++
Sbjct: 1 LALGMQMVAPMTISLPLKILLFVLVDGWTRLLDGLFYSYM 40
>gi|51587258|emb|CAE53648.1| putative HrcR protein [Pseudomonas gingeri]
Length = 53
Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 43/53 (81%)
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L S++
Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWSRLLDSLFYSYL 53
>gi|321399625|emb|CBJ44634.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTE-48-204]
gi|321399629|emb|CBJ44637.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTE-48-205]
Length = 53
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 43/53 (81%)
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++
Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 53
>gi|170690583|ref|ZP_02881750.1| hypothetical protein BgramDRAFT_0559 [Burkholderia graminis
C4D1M]
gi|170145018|gb|EDT13179.1| hypothetical protein BgramDRAFT_0559 [Burkholderia graminis
C4D1M]
Length = 65
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
+ I + +S+ P + ++VT + + ++V +LR +G+ P
Sbjct: 3 QFSDITGLLIVIVAISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQCRPT 52
>gi|190694824|gb|ACE88959.1| HrcR [Pseudomonas fluorescens]
Length = 47
Score = 45.0 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 37/47 (78%)
Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++
Sbjct: 1 LIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFFSYL 47
>gi|158524084|gb|ABW71149.1| putative type III secretion apparatus protein [Vibrio
parahaemolyticus]
Length = 125
Score = 44.6 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 20/131 (15%)
Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
M + P + IE ++P + Q + + M N L
Sbjct: 1 MALNAVWPQIQPGIER-VKPYFSQQEKQELNQDVDND-----MPKNVTMYSLVSEWSTFF 54
Query: 154 SSHRNTDITKNDHIEYRILIP--------------SFMISELRRSFEIGFLIILPFLIID 199
K D + I +P +I++L + FE+G + + F+ ID
Sbjct: 55 PELLEHAKQKTDKLSEVIELPFNFDKEHDTFKYFVGSLINDLYKGFELGLKLYIVFVSID 114
Query: 200 MIVATIVMAMG 210
++A I+ +G
Sbjct: 115 FLIAVILSGVG 125
>gi|226446413|gb|ACO58572.1| HrcR [Pseudomonas fluorescens]
Length = 46
Score = 44.6 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 36/46 (78%)
Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++
Sbjct: 1 IVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 46
>gi|270488968|ref|ZP_06206042.1| flagellar biosynthesis protein FliP domain protein [Yersinia pestis
KIM D27]
gi|270337472|gb|EFA48249.1| flagellar biosynthesis protein FliP domain protein [Yersinia pestis
KIM D27]
Length = 41
Score = 44.6 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 35/41 (85%)
Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
++AMGMMM+ P ++SLPFK++ FVL+DGWSL++ LV S++
Sbjct: 1 MLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL 41
>gi|51587266|emb|CAE53654.1| putative HrcR [Pseudomonas fluorescens bv. I]
gi|51587322|emb|CAE53696.1| putative HrcR [Pseudomonas sp. CFBP 11402]
Length = 53
Score = 43.4 bits (101), Expect = 0.024, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 43/53 (81%)
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L S++
Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVSGWSRLLDSLFLSYL 53
>gi|321399653|emb|CBJ44655.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTR-J5-327]
Length = 52
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 42/52 (80%)
Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
F++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++
Sbjct: 1 FIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 52
>gi|321399836|emb|CBJ44673.1| putative type III secretion system protein HcrR [Pseudomonas sp.
MTR-J5-721]
Length = 53
Score = 42.7 bits (99), Expect = 0.045, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 42/53 (79%)
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
PF++I +IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++
Sbjct: 1 PFIVIGLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 53
>gi|51587246|emb|CAE53639.1| putative HrcR protein [Pseudomonas syringae pv. syringae]
gi|51587250|emb|CAE53642.1| putative HrcR protein [Pseudomonas syringae pv. phaseolicola]
Length = 53
Score = 42.3 bits (98), Expect = 0.062, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 43/53 (81%)
Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
PF++ID+IV+ +++A+GM M+ P ++SLP K++ FVL+ GWS L+++L S++
Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 53
>gi|130855423|gb|ABO32589.1| SpaP [Sodalis endosymbiont of Craterina melbae]
Length = 48
Score = 41.9 bits (97), Expect = 0.070, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 27/35 (77%)
Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
MM+ P ++S+P K++ FV++DGW+LL + LV ++
Sbjct: 1 MMMSPITLSVPIKLVLFVVLDGWTLLSQGLVLQYL 35
>gi|331005461|ref|ZP_08328840.1| hypothetical protein IMCC1989_1974 [gamma proteobacterium IMCC1989]
gi|330420737|gb|EGG95024.1| hypothetical protein IMCC1989_1974 [gamma proteobacterium IMCC1989]
Length = 39
Score = 39.2 bits (90), Expect = 0.45, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 31/37 (83%)
Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
MGM+M+PP ISLP K++ F+LIDGW ++ ++L++SF
Sbjct: 1 MGMLMVPPMMISLPIKILMFILIDGWFIVTKSLMESF 37
>gi|9663110|emb|CAC01118.1| FliP flagellar protein, truncated [Helicobacter pylori]
Length = 51
Score = 38.8 bits (89), Expect = 0.62, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
+ + T+L +AP L++++T F R I+VFS LRT +G PP
Sbjct: 3 TTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPP 48
>gi|51587270|emb|CAE53657.1| putative HrcR [Pseudomonas fluorescens]
Length = 49
Score = 38.8 bits (89), Expect = 0.76, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 39/49 (79%)
Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L S++
Sbjct: 1 IDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVSGWSRLLDSLFLSYL 49
>gi|22854670|gb|AAN09754.1| invasion protein [primary endosymbiont of Sitophilus zeamais]
Length = 40
Score = 38.4 bits (88), Expect = 0.82, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
S+P K++ FV++DGW+LL + LV ++
Sbjct: 1 SVPIKLVLFVVLDGWTLLSQGLVLQYL 27
>gi|51587302|emb|CAE53681.1| putative HrcR protein [Pseudomonas fluorescens]
Length = 48
Score = 37.3 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 38/48 (79%)
Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
D+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L S++
Sbjct: 1 DLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVTGWSRLLDSLFLSYL 48
>gi|284810383|gb|ADB95983.1| putative HrcR [Pseudomonas cichorii]
gi|284810395|gb|ADB95992.1| putative HrcR [Pseudomonas cichorii]
gi|284810407|gb|ADB96001.1| putative HrcR [Pseudomonas cichorii]
gi|284810411|gb|ADB96004.1| putative HrcR [Pseudomonas cichorii]
gi|284810415|gb|ADB96007.1| putative HrcR [Pseudomonas cichorii]
Length = 30
Score = 37.3 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
+ISLP K++ FVL+DGW+ L++ L S++
Sbjct: 1 MTISLPLKILLFVLVDGWTRLLDGLFYSYM 30
>gi|118468237|ref|YP_885028.1| ftsk/SpoIIIE family protein [Mycobacterium smegmatis str. MC2 155]
gi|118169524|gb|ABK70420.1| ftsk/spoiiie family protein [Mycobacterium smegmatis str. MC2 155]
Length = 1325
Score = 36.5 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 193 LPFLIIDMIVATI--VMAMGMMMLPPTSISLPFKVIF 227
LPFLI+ +IV I + A GM ++ PT + PF ++
Sbjct: 43 LPFLIVILIVGMIVALFATGMRLISPTMLFFPFVLLL 79
>gi|320580665|gb|EFW94887.1| putative allantoate permease [Pichia angusta DL-1]
Length = 894
Score = 36.5 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 27/198 (13%), Positives = 66/198 (33%), Gaps = 13/198 (6%)
Query: 44 GIFTIL--SIAPILLIMVTCF---PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
+ +L P L++ ++ F I S T + + + L+ +
Sbjct: 530 ALLGLLEGGFTPELVLWMSYFFTSSELSIKLSYFWTALSLTQIGTALMAYGILRMRGILG 589
Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRV-----AEPFWVFMRNNTREKDLSLFMDMAH 153
M+ I+ I +A+ + FW T ++ + +
Sbjct: 590 MAG-WQ--WLFIIEGAFTLLIALVSALVMAPSVVQTKRFWNKKGWFTEREEKIIVNKVLR 646
Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
D+ + LI + + + + IG L +P ++ + ++ +G
Sbjct: 647 DDPSKGDMNNRQGVTTSNLIYALLDYNMYPLYIIGILAYIPLNLLTSYMTLVLKNLGFTT 706
Query: 214 LPPTSISLPFKVIFFVLI 231
L +++P+ I +L+
Sbjct: 707 LNAVLLTVPYSFIHIILL 724
>gi|120401438|ref|YP_951267.1| cell divisionFtsK/SpoIIIE [Mycobacterium vanbaalenii PYR-1]
gi|119954256|gb|ABM11261.1| cell division protein FtsK/SpoIIIE [Mycobacterium vanbaalenii
PYR-1]
Length = 1331
Score = 36.1 bits (82), Expect = 4.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 193 LPFLIIDMIVATI--VMAMGMMMLPPTSISLPFKVIF 227
LP+LI+ +IV I ++A G+ M+ PT + PF ++
Sbjct: 43 LPYLIVILIVGMIVALVATGLRMISPTMLFFPFVLLL 79
>gi|281205848|gb|EFA80037.1| ABC transporter A family protein [Polysphondylium pallidum PN500]
Length = 792
Score = 35.7 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 33/53 (62%)
Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
L F+I+ +I+AT+++ MG+ P + PF++I +++ G++L+ + S
Sbjct: 251 YLFFIILYLIIATVMIVMGLGGSLPYFLKEPFRIILLIVVYGFALVSLAFLFS 303
>gi|269128331|ref|YP_003301701.1| hypothetical protein Tcur_4135 [Thermomonospora curvata DSM 43183]
gi|268313289|gb|ACY99663.1| hypothetical protein Tcur_4135 [Thermomonospora curvata DSM 43183]
Length = 1002
Score = 35.7 bits (81), Expect = 6.3, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 2/157 (1%)
Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
AL L + + + + S ++ T L + +L+ V R +
Sbjct: 37 ALLLAFGSPLPERMPTLEDLTGRIGPSAIITVLVTLVWLAWLQLVVCVLVEVHAGIRGVG 96
Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
V + G+ + LV+ +L LF T + P P+ Q +
Sbjct: 97 VPVRVPLAGGLQPLVHRLVLAALLLFTTASAVMPAFSGRDMPSTAPVAAVQTDHFQ-LVA 155
Query: 128 VAEPFWVFMRNNTREKD-LSLFMDMAHSSHRNTDITK 163
P + T E+ +L +A T TK
Sbjct: 156 ATTPLARAEPSGTAEEGARALAESVAAEPTEKTQTTK 192
>gi|330947078|gb|EGH47860.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 28
Score = 35.4 bits (80), Expect = 7.8, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
+PFK++ FVL+DGW+L+V L SF
Sbjct: 1 MPFKIMLFVLVDGWALIVGTLAGSF 25
>gi|310796520|gb|EFQ31981.1| hypothetical protein GLRG_07125 [Glomerella graminicola M1.001]
Length = 757
Score = 35.4 bits (80), Expect = 8.0, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 4/117 (3%)
Query: 16 LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
A + D ++ + + S+ P+ M + ++V S+++
Sbjct: 281 SALAVGAFQDSTSLHNSGGPEALDRPSLILTAARSLIPVEAGMALGHVKALLVLSLVK-- 338
Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI--QPLMNNQITETTAIQRVAE 130
+G S ++I LA+ T + I QP + Q + + A+ RV +
Sbjct: 339 LGQDSAGAASLLIGLAVRGTMALTDGQARDRHRNSISGQPASSIQESYSNALDRVLK 395
>gi|212694860|ref|ZP_03302988.1| hypothetical protein BACDOR_04394 [Bacteroides dorei DSM 17855]
gi|237727181|ref|ZP_04557662.1| ammonium transporter [Bacteroides sp. D4]
gi|212662613|gb|EEB23187.1| hypothetical protein BACDOR_04394 [Bacteroides dorei DSM 17855]
gi|229434037|gb|EEO44114.1| ammonium transporter [Bacteroides dorei 5_1_36/D4]
Length = 465
Score = 35.4 bits (80), Expect = 8.5, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 3/135 (2%)
Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
F L + P ++A+ +L + D IV G+ T+ + +L+
Sbjct: 17 LFILLFLFPASLWAQDALSETPVRSTDTEAINEIVT--GLNTVWMLLAAMLVFFMQPGFA 74
Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
++ +RT + NL+ + +++ + P N I
Sbjct: 75 LVEAGFIRTKNTANVLMKNLIDFMFGSILFWFIGFGLMFGVGGFVGTPHFFNLDIMDKVI 134
Query: 126 QRVAEPFWVFMRNNT 140
P F+ T
Sbjct: 135 DNGL-PIEGFLIFQT 148
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.318 0.141 0.398
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,187,142,724
Number of Sequences: 14124377
Number of extensions: 96683997
Number of successful extensions: 840494
Number of sequences better than 10.0: 2290
Number of HSP's better than 10.0 without gapping: 1588
Number of HSP's successfully gapped in prelim test: 702
Number of HSP's that attempted gapping in prelim test: 834902
Number of HSP's gapped (non-prelim): 2790
length of query: 246
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 111
effective length of database: 2,936,002,735
effective search space: 325896303585
effective search space used: 325896303585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.7 bits)
S2: 79 (35.0 bits)