RPSBLAST alignment for GI: 254780372 and conserved domain: TIGR01102

>gnl|CDD|130172 TIGR01102, yscR, type III secretion apparatus protein, YscR/HrcR family. This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells. Length = 202
 Score =  153 bits (389), Expect = 4e-38
 Identities = 70/203 (34%), Positives = 120/203 (59%), Gaps = 8/203 (3%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            +   LS+ P ++++ T F +  +V  ILR  +G+  VPPN+ +  +AL ++ +VM+P  
Sbjct: 3   AVLAALSLLPFIIVVGTSFLKISVVLGILRNALGVQQVPPNMALYGIALILSMFVMAPVG 62

Query: 104 DRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRN 158
            ++ +   Q     +N      ++     P+  F++ NT E +++ F             
Sbjct: 63  HQAQDRFHQEPVAYSNIDFLQKSLDAGLAPYREFLKKNTDEDEVAFFERSTQKMWPKEMA 122

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
             + K+  +   IL+P+F +SEL  +F+IGFL+ LPF++ID+IV+ I++A+GMMM+ P +
Sbjct: 123 DRLKKDSLL---ILLPAFTLSELTAAFKIGFLLYLPFIVIDLIVSNILLALGMMMVSPMT 179

Query: 219 ISLPFKVIFFVLIDGWSLLVENL 241
           ISLPFK++ FVLIDGWS L+  L
Sbjct: 180 ISLPFKLLLFVLIDGWSRLLHGL 202