RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein
FliP [Candidatus Liberibacter asiaticus str. psy62]
         (246 letters)



>3ix7_A Uncharacterized protein TTHA0540; unknown function,
           structural genomics, PSI-2, protein structure
           initiative; HET: MSE; 2.15A {Thermus thermophilus HB8}
           (A:)
          Length = 134

 Score = 28.3 bits (63), Expect = 0.94
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           D S+ +D      R  ++     +E  + +P F++ EL+ 
Sbjct: 11  DTSVLVD-----GRVAEVAAVGFLEGPLWVPHFVLKELQH 45


>1x87_A Urocanase protein; structural genomics, protein structure
           initiative, MCSG, PSI, midwest center for structural
           genomics; HET: MSE NAD; 2.40A {Geobacillus
           stearothermophilus} (A:122-342)
          Length = 221

 Score = 27.4 bits (61), Expect = 2.0
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 12  VTPELVFAKSSLHDVMN--IPADLSISTW 38
             P+++  ++S HD +N  IPA L++   
Sbjct: 130 FVPDVLTDQTSAHDPLNGYIPAGLTLDEA 158


>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A
           {Bacillus subtilis} (A:132-347)
          Length = 216

 Score = 26.6 bits (59), Expect = 3.4
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 12  VTPELVFAKSSLHDVMN--IPADLSISTW 38
           V  ++V  ++S HD +   +P   S+   
Sbjct: 121 VKIDIVTDQTSAHDPLIGYVPEGYSLDEA 149


>1uwk_A Urocanate hydratase; hydrolase, urocanase,
           imidazolonepropionate, histidine metabolism, lyase; HET:
           NAD URO; 1.19A {Pseudomonas putida} (A:136-351)
          Length = 216

 Score = 25.8 bits (57), Expect = 6.4
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 12  VTPELVFAKSSLHDVMN--IPADLSISTW 38
           V P++V  ++S HD +N  +PA  +   +
Sbjct: 121 VRPDMVTDQTSAHDPLNGYLPAGWTWEQY 149


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.333    0.144    0.432 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,814,296
Number of extensions: 77868
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 16
Length of query: 246
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 160
Effective length of database: 2,048,819
Effective search space: 327811040
Effective search space used: 327811040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 53 (24.4 bits)