RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter asiaticus str. psy62] (246 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 36.1 bits (83), Expect = 0.007 Identities = 35/230 (15%), Positives = 59/230 (25%), Gaps = 105/230 (45%) Query: 61 CFPRFIIVFSILRTGM--GMGSVPPNLVI------------------------ISLALF- 93 +P + SIL + G P L I + ++L Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372 Query: 94 --MTFYVMSPTLD--------RSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 V P R + G+ +Q R+ PF Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGL-----DQ-------SRI--PF--------S 410 Query: 142 EKDLSL---FMDMA---HSSH--RNTDITKNDHIEYRILIPSFMISELR----------- 182 E+ L F+ +A HS +D+ D ++ + + +++ Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA---KDIQIPVYDTFDGSD 467 Query: 183 -RSFEIGFLIILPFLIIDMIV--------ATIVMAMGMMMLPPTSISLPF 223 R I I+D I+ T T I L F Sbjct: 468 LRVLSGS---ISE-RIVDCIIRLPVKWETTTQ--------FKATHI-LDF 504 Score = 34.5 bits (79), Expect = 0.025 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 4/38 (10%) Query: 151 MAHSSHRNTDITKNDHIEYRILIPS---FMISELRRSF 185 M S R ++ + +E+ +L+P+ F+ S+L+ F Sbjct: 1 MDAYSTRPLTLS-HGSLEHVLLVPTASFFIASQLQEQF 37 Score = 31.1 bits (70), Expect = 0.24 Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 51/112 (45%) Query: 11 LVTPELVFAKSSLHDVMNIP-------ADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 LV + F + IP +DL R SI+ ++ + P Sbjct: 443 LVKNNVSFNAKDIQ----IPVYDTFDGSDL-------RVLSG----SISERIVDCIIRLP 487 Query: 64 -------RF----IIVF------------SILRTGMGMGSVPPNLVIISLAL 92 +F I+ F + G G+ VI++ L Sbjct: 488 VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV------RVIVAGTL 533 Score = 26.1 bits (57), Expect = 8.8 Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 54/167 (32%) Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP-LMNNQITETT----------AIQRV 128 S+P + +I + + V + L G P + + + T AI Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLL------GFTPGELRSYLKGATGHSQGLVTAVAIAET 286 Query: 129 AEPFW-VFMRNNTREKDLSLFMDMAHSSHR---NTDITKN---DHIEYRILIPSFM--IS 179 W F + K +++ + + NT + + D +E +PS M IS Sbjct: 287 DS--WESFFVSV--RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342 Query: 180 ELRRSFEIGFLIILPFL--IIDMIVATIVMAMGMMMLPPT---SISL 221 L + + ++ + LP ISL Sbjct: 343 NLTQE----------QVQDYVNKTNSH---------LPAGKQVEISL 370 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 31.1 bits (69), Expect = 0.24 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 10/59 (16%) Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 ++ E A +V E W REK D+ + R ++ + + I RI +F Sbjct: 97 RLQELDAASKVMEQEW-------REKAKK---DLEEWNQRQSEQVEKNKINNRIADKAF 145 >2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347 Score = 26.0 bits (57), Expect = 7.9 Identities = 8/67 (11%), Positives = 24/67 (35%) Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 H++ +T + I I L+ + + ++ + + +D A I + + Sbjct: 94 GKHQSITVTVDSEISITKEWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGI 153 Query: 214 LPPTSIS 220 ++ Sbjct: 154 QQVGTVY 160 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.333 0.144 0.432 Gapped Lambda K H 0.267 0.0497 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,085,376 Number of extensions: 92891 Number of successful extensions: 328 Number of sequences better than 10.0: 1 Number of HSP's gapped: 328 Number of HSP's successfully gapped: 33 Length of query: 246 Length of database: 5,693,230 Length adjustment: 90 Effective length of query: 156 Effective length of database: 3,511,270 Effective search space: 547758120 Effective search space used: 547758120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 55 (25.5 bits)