RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein
FliP [Candidatus Liberibacter asiaticus str. psy62]
         (246 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.1 bits (83), Expect = 0.007
 Identities = 35/230 (15%), Positives = 59/230 (25%), Gaps = 105/230 (45%)

Query: 61  CFPRFIIVFSILRTGM--GMGSVPPNLVI------------------------ISLALF- 93
            +P   +  SIL   +    G   P L I                        + ++L  
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372

Query: 94  --MTFYVMSPTLD--------RSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
                 V  P           R  +   G+     +Q        R+  PF         
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGL-----DQ-------SRI--PF--------S 410

Query: 142 EKDLSL---FMDMA---HSSH--RNTDITKNDHIEYRILIPSFMISELR----------- 182
           E+ L     F+ +A   HS      +D+   D ++  +   +    +++           
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA---KDIQIPVYDTFDGSD 467

Query: 183 -RSFEIGFLIILPFLIIDMIV--------ATIVMAMGMMMLPPTSISLPF 223
            R        I    I+D I+         T            T I L F
Sbjct: 468 LRVLSGS---ISE-RIVDCIIRLPVKWETTTQ--------FKATHI-LDF 504



 Score = 34.5 bits (79), Expect = 0.025
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 151 MAHSSHRNTDITKNDHIEYRILIPS---FMISELRRSF 185
           M   S R   ++ +  +E+ +L+P+   F+ S+L+  F
Sbjct: 1   MDAYSTRPLTLS-HGSLEHVLLVPTASFFIASQLQEQF 37



 Score = 31.1 bits (70), Expect = 0.24
 Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 51/112 (45%)

Query: 11  LVTPELVFAKSSLHDVMNIP-------ADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           LV   + F    +     IP       +DL       R        SI+  ++  +   P
Sbjct: 443 LVKNNVSFNAKDIQ----IPVYDTFDGSDL-------RVLSG----SISERIVDCIIRLP 487

Query: 64  -------RF----IIVF------------SILRTGMGMGSVPPNLVIISLAL 92
                  +F    I+ F               + G G+       VI++  L
Sbjct: 488 VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV------RVIVAGTL 533



 Score = 26.1 bits (57), Expect = 8.8
 Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 54/167 (32%)

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP-LMNNQITETT----------AIQRV 128
           S+P +  +I +     + V +  L      G  P  + + +   T          AI   
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLL------GFTPGELRSYLKGATGHSQGLVTAVAIAET 286

Query: 129 AEPFW-VFMRNNTREKDLSLFMDMAHSSHR---NTDITKN---DHIEYRILIPSFM--IS 179
               W  F  +    K +++   +    +    NT +  +   D +E    +PS M  IS
Sbjct: 287 DS--WESFFVSV--RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342

Query: 180 ELRRSFEIGFLIILPFL--IIDMIVATIVMAMGMMMLPPT---SISL 221
            L +            +   ++   +          LP      ISL
Sbjct: 343 NLTQE----------QVQDYVNKTNSH---------LPAGKQVEISL 370


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 31.1 bits (69), Expect = 0.24
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 10/59 (16%)

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
           ++ E  A  +V E  W       REK      D+   + R ++  + + I  RI   +F
Sbjct: 97  RLQELDAASKVMEQEW-------REKAKK---DLEEWNQRQSEQVEKNKINNRIADKAF 145


>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell
           cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1
           c.55.4.2 d.79.3.2
          Length = 347

 Score = 26.0 bits (57), Expect = 7.9
 Identities = 8/67 (11%), Positives = 24/67 (35%)

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
             H++  +T +  I          I  L+ + +  ++ +   + +D   A I +     +
Sbjct: 94  GKHQSITVTVDSEISITKEWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGI 153

Query: 214 LPPTSIS 220
               ++ 
Sbjct: 154 QQVGTVY 160


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.333    0.144    0.432 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,085,376
Number of extensions: 92891
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 33
Length of query: 246
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 156
Effective length of database: 3,511,270
Effective search space: 547758120
Effective search space used: 547758120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 55 (25.5 bits)