HHsearch alignment for GI: 254780373 and conserved domain: PRK05696
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed.
Probab=100.00 E-value=1e-37 Score=224.85 Aligned_cols=155 Identities=10% Similarity=0.144 Sum_probs=108.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 85435532346763205999999999999999999999970678765201245565310112233333344443333530
Q gi|254780373|r 2 SYDDTTSQYIRGNQHKLFVTWFVVYTFIGIFCGWLGGIVMLFLFAGQKEEKYQKFILNNFYDNSVRSVHTGDTISLKKLQ 81 (172)
Q Consensus 2 a~~~~~~~~~kG~~~kl~Iii~~vv~ll~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
T Consensus 2 a~e~~e~e~~~k~KkKLiiii~~~vlll~ggggg-~~-~~lg~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 66 (168)
T PRK05696 2 ASEELEKDEAPKSKKKLIIIIVVGVLLALGGGGA-AW-FFMGSSDPAEAAAAEAAAA-------------AAAAPVPPAL 66 (168)
T ss_pred CCHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHH-HH-HHHCCCCCCCCCCCCCCCC-------------CCCCCCCCCC
T ss_conf 0023113467888633204799999999999999-99-9955887544444444556-------------6778877752
Q ss_pred EECC-CCEEEEECCCCC-EEEEEEEEEEECCCH----HHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 2103-320242058983-389999998504402----4542189999999998418988950889999999999999854
Q gi|254780373|r 82 IFSL-QPIITNFDSSPK-DWLRLDIALICKDIP----DKVFLETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIEERVKL 155 (172)
Q Consensus 82 ~~~l-~~fvvNL~~~~~-r~lk~~i~l~~~~~~----~e~~~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el~~~in~ 155 (172)
T Consensus 67 y~~l~~~F~VNL~~~~~~ryLqv~i~L~~~d~~~~~~i~~~~P~IR~~ll~lls~~~~~~l~t~eGk~~Lr~e~~~~in~ 146 (168)
T PRK05696 67 YVPMPRPFVFNVPGNGRDRLVQIKVQLMVRGSADEELAKKHIPLIENALLMTFSGADVDQLSTPAGKEELRQKALASVQE 146 (168)
T ss_pred CCCCCCCEEEECCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 13578663886168997469999999998887689999875588999999999628998960987899999999999999
Q ss_pred -H----CCCCEEEEEEEEEEC
Q ss_conf -2----356312576432201
Q gi|254780373|r 156 -R----SQGFVSSVIFRTFII 171 (172)
Q Consensus 156 -~----~~g~V~~V~Ft~fVv 171 (172)
T Consensus 147 ~l~~~~g~~~V~~VlFT~FVv 167 (168)
T PRK05696 147 TLQKVTGKPVVEKVLFTGFVM 167 (168)
T ss_pred HHHHCCCCCCEEEEEECCCEE
T ss_conf 976313887512785302364