HHsearch alignment for GI: 254780373 and conserved domain: PRK07021
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed.
Probab=100.00 E-value=9.8e-37 Score=219.46 Aligned_cols=143 Identities=13% Similarity=0.200 Sum_probs=106.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCE
Q ss_conf 23467632059999999999999999999999706787652012455653101122333333444433335302103320
Q gi|254780373|r 9 QYIRGNQHKLFVTWFVVYTFIGIFCGWLGGIVMLFLFAGQKEEKYQKFILNNFYDNSVRSVHTGDTISLKKLQIFSLQPI 88 (172)
Q Consensus 9 ~~~kG~~~kl~Iii~~vv~ll~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f 88 (172)
T Consensus 5 ~~~~~~kkkl~iii~~~~lll~~~g~g~~~~~-~~~~~~~~-~~~~------------------~~~~~~~pvf~~l~~f 64 (159)
T PRK07021 5 AASKKKKKSIWLILLILITLAAAAGAGYSYWL-SKQGAAHA-AAKA------------------EPAPPPAPVFFPLETF 64 (159)
T ss_pred CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH-CCCCCCCC-CCCC------------------CCCCCCCCEEEECCCE
T ss_conf 77788876040589999999999999999995-47766666-6666------------------6778898757734751
Q ss_pred EEEEC-CCC-CEEEEEEEEEEECCCH----HHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHH-HHCC---
Q ss_conf 24205-898-3389999998504402----454218999999999841898895088999999999999985-4235---
Q gi|254780373|r 89 ITNFD-SSP-KDWLRLDIALICKDIP----DKVFLETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIEERVK-LRSQ--- 158 (172)
Q Consensus 89 vvNL~-~~~-~r~lk~~i~l~~~~~~----~e~~~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el~~~in-~~~~--- 158 (172)
T Consensus 65 ~VNL~~~~~~~ryLqv~i~L~~~d~~~~~~l~~~~P~Ird~ll~lls~~~~~dL~t~eGk~~L~~ei~~~vn~~l~~~~~ 144 (159)
T PRK07021 65 TVNLQPDDDADRVLYIGLTLRLKDEATRERLKEYLPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKETLEQPLVPGQP 144 (159)
T ss_pred EEECCCCCCCCEEEEEEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 79713899864599999999976877898998607478999999985499889649889999999999999998745688
Q ss_pred -CCEEEEEEEEEEC
Q ss_conf -6312576432201
Q gi|254780373|r 159 -GFVSSVIFRTFII 171 (172)
Q Consensus 159 -g~V~~V~Ft~fVv 171 (172)
T Consensus 145 ~~~V~~VlFT~FVv 158 (159)
T PRK07021 145 KQVVTDVLFTAFIL 158 (159)
T ss_pred CCCEEEEEEEEEEE
T ss_conf 88345892144064