HHsearch alignment for GI: 254780373 and conserved domain: PRK12785
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed.
Probab=100.00 E-value=3.7e-38 Score=227.22 Aligned_cols=144 Identities=16% Similarity=0.256 Sum_probs=105.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 53234676320599999999999999999999997067876520124556531011223333334444333353021033
Q gi|254780373|r 7 TSQYIRGNQHKLFVTWFVVYTFIGIFCGWLGGIVMLFLFAGQKEEKYQKFILNNFYDNSVRSVHTGDTISLKKLQIFSLQ 86 (172)
Q Consensus 7 ~~~~~kG~~~kl~Iii~~vv~ll~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (172)
T Consensus 15 e~~~~kkkkkkliIii~~~vlll~gggg~~f-~-~~~~~~~~~~~~-------------------~~~~~~~~~~f~~l~ 73 (167)
T PRK12785 15 EGAAPPKKKKKLIIIAAAAVLLLGGGGGGWF-F-FFRGHGADEHHA-------------------EAAPKVKPPVFVDVP 73 (167)
T ss_pred CCCCCCCCCCEEEEEHHHHHHHHHHHHHHEE-E-EECCCCCCCCCC-------------------CCCCCCCCCEEEECC
T ss_conf 5677877773587619999999973114014-6-642688765555-------------------667778986376148
Q ss_pred CEEEEECC-CC-C-EEEEEEEEEEECCCH----HHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHH-HHCC
Q ss_conf 20242058-98-3-389999998504402----454218999999999841898895088999999999999985-4235
Q gi|254780373|r 87 PIITNFDS-SP-K-DWLRLDIALICKDIP----DKVFLETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIEERVK-LRSQ 158 (172)
Q Consensus 87 ~fvvNL~~-~~-~-r~lk~~i~l~~~~~~----~e~~~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el~~~in-~~~~ 158 (172)
T Consensus 74 ~fvVNL~~~~g~r~ryLk~~i~Lev~~~~~~~~~~~~~P~IrD~i~~~L~~~~~~dL~~~~Gk~~Lr~ell~rin~~l~~ 153 (167)
T PRK12785 74 DMLVNLAGDPGERVQYLKVKVVLEVKDEKQVEQIKPLMPRVTDLFQTYLRELRSSDLNGSAGLFRLKEELTRRVNVALAP 153 (167)
T ss_pred CEEEECCCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 85998789999853599999999988887899998753679999999997189989709377999999999999854178
Q ss_pred CCEEEEEEEEEEC
Q ss_conf 6312576432201
Q gi|254780373|r 159 GFVSSVIFRTFII 171 (172)
Q Consensus 159 g~V~~V~Ft~fVv 171 (172)
T Consensus 154 ~~V~~VlFtefVv 166 (167)
T PRK12785 154 AQVNAVLFKEVVI 166 (167)
T ss_pred CCEEEEEEEEEEE
T ss_conf 8235998986387