Query gi|254780373|ref|YP_003064786.1| flagellar basal body-associated protein FliL [Candidatus Liberibacter asiaticus str. psy62] Match_columns 172 No_of_seqs 118 out of 496 Neff 7.8 Searched_HMMs 23785 Date Mon May 30 10:22:35 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780373.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3pe5_A Uncharacterized protein 73.7 0.8 3.3E-05 22.8 0.8 15 19-33 36-50 (403) 2 3gxq_A Putative regulator of t 60.4 4.4 0.00019 18.7 2.5 33 117-150 19-51 (54) 3 3owq_A LIN1025 protein; struct 51.6 2.8 0.00012 19.9 0.2 29 123-152 199-227 (321) 4 1rz2_A Conserved hypothetical 34.5 9.7 0.00041 16.9 0.8 14 139-152 199-212 (254) 5 2w3z_A Putative deacetylase; P 32.1 16 0.00069 15.6 1.7 13 142-154 183-195 (311) 6 3h9i_A Cation efflux system pr 25.0 12 0.00052 16.3 0.0 10 17-26 3-12 (407) 7 2cvc_A Cytochrome CC3, high-mo 24.3 13 0.00055 16.2 0.0 22 12-33 3-24 (545) 8 2knc_A Integrin alpha-IIB; tra 15.1 53 0.0022 12.9 2.9 29 15-43 9-37 (54) 9 1xdx_A Tctex1 light chain prot 13.9 57 0.0024 12.7 6.0 51 116-166 18-70 (114) 10 2hm2_Q ASC2, pyrin-only protei 13.7 57 0.0024 12.7 1.3 29 117-147 1-29 (89) No 1 >3pe5_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; 2.38A {Clostridium leptum} Probab=73.70 E-value=0.8 Score=22.81 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=5.0 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999999 Q gi|254780373|r 19 FVTWFVVYTFIGIFC 33 (172) Q Consensus 19 ~Iii~~vv~ll~~g~ 33 (172) +++++++++++++++ T Consensus 36 ~i~~~~~ll~~~~~g 50 (403) T 3pe5_A 36 VIIIILCVVFSGLGG 50 (403) T ss_dssp --------------- T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999999 No 2 >3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp} Probab=60.41 E-value=4.4 Score=18.74 Aligned_cols=33 Identities=15% Similarity=0.387 Sum_probs=28.7 Q ss_pred HHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHH Q ss_conf 1899999999984189889508899999999999 Q gi|254780373|r 117 LETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIE 150 (172) Q Consensus 117 ~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el~ 150 (172) -|.++|.|+.|-.++.++.++ ..|++.|+.-+. T Consensus 19 dpdmkdeiikyaqekdfdnvs-qagreilkkgle 51 (54) T 3gxq_A 19 DPDMKDEIIKYAQEKDFDNVS-QAGREILKKGLE 51 (54) T ss_dssp CHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHH T ss_conf 874158999988871610588-989999997787 No 3 >3owq_A LIN1025 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; 2.61A {Listeria innocua} PDB: 3nro_A Probab=51.62 E-value=2.8 Score=19.87 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=10.7 Q ss_pred HHHHHHHCCCHHHHCCHHHHHHHHHHHHHH Q ss_conf 999998418988950889999999999999 Q gi|254780373|r 123 DIMAYIRTVSIKQITGAQGFRYFKEDIEER 152 (172) Q Consensus 123 ~il~~L~~~~~~dl~~~~Gk~~Lk~el~~~ 152 (172) ..+.|.|....+. .+.-||.+-+++.+.. T Consensus 199 ~Al~y~R~R~~~~-~gD~~R~~rQq~~l~a 227 (321) T 3owq_A 199 DALQYVRIRHEDP-RGDFGRQDRQRDVIIG 227 (321) T ss_dssp HHHHHHTCCTTCT-THHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCC-CCCHHHHHHHHHHHHH T ss_conf 9866001206788-8637699999999999 No 4 >1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, protein structure initiative; 1.60A {Bacillus anthracis str} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A* Probab=34.47 E-value=9.7 Score=16.90 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=5.0 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 89999999999999 Q gi|254780373|r 139 AQGFRYFKEDIEER 152 (172) Q Consensus 139 ~~Gk~~Lk~el~~~ 152 (172) .+..+.+-++++++ T Consensus 199 ~~~~~~~~~~~~~~ 212 (254) T 1rz2_A 199 DTEYTSFLEKIQEK 212 (254) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 78889999998751 No 5 >2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159} Probab=32.10 E-value=16 Score=15.64 Aligned_cols=13 Identities=0% Similarity=0.061 Sum_probs=6.8 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999985 Q gi|254780373|r 142 FRYFKEDIEERVK 154 (172) Q Consensus 142 k~~Lk~el~~~in 154 (172) .+.+++||....+ T Consensus 183 ~~~~~~ei~~~~~ 195 (311) T 2w3z_A 183 TQQIVSEVTRTQN 195 (311) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 6 >3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B Probab=24.98 E-value=12 Score=16.31 Aligned_cols=10 Identities=10% Similarity=-0.071 Sum_probs=3.4 Q ss_pred HHHHHHHHHH Q ss_conf 0599999999 Q gi|254780373|r 17 KLFVTWFVVY 26 (172) Q Consensus 17 kl~Iii~~vv 26 (172) |+.++++.++ T Consensus 3 k~~~~~~~~~ 12 (407) T 3h9i_A 3 KIALIIGSMI 12 (407) T ss_dssp ---------- T ss_pred CHHHHHHHHH T ss_conf 0699999999 No 7 >2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor; electron transport; HET: HEM; 2.00A {Desulfovibrio vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A* Probab=24.26 E-value=13 Score=16.19 Aligned_cols=22 Identities=14% Similarity=0.145 Sum_probs=11.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHH Q ss_conf 6763205999999999999999 Q gi|254780373|r 12 RGNQHKLFVTWFVVYTFIGIFC 33 (172) Q Consensus 12 kG~~~kl~Iii~~vv~ll~~g~ 33 (172) +|++...|+++++|++++++++ T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ 24 (545) T 2cvc_A 3 NGRTLLRWAGVLAATAIIGVGG 24 (545) T ss_dssp ---------------------- T ss_pred CCHHHHHHHHHHHHHHHHHHHH T ss_conf 5203699999999999998887 No 8 >2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} Probab=15.11 E-value=53 Score=12.89 Aligned_cols=29 Identities=3% Similarity=-0.175 Sum_probs=11.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 32059999999999999999999999706 Q gi|254780373|r 15 QHKLFVTWFVVYTFIGIFCGWLGGIVMLF 43 (172) Q Consensus 15 ~~kl~Iii~~vv~ll~~g~g~~~~~~~~~ 43 (172) ..-++||++.++..+.+-+...+..|..+ T Consensus 9 ~vP~WiIivsv~~GlLlL~ll~~~LwK~G 37 (54) T 2knc_A 9 AIPIWWVLVGVLGGLLLLTILVLAMWKVG 37 (54) T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCEEHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 88730469999999999999999999827 No 9 >1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer, solution structure, contractIle protein; NMR {Chlamydomonas reinhardtii} Probab=13.89 E-value=57 Score=12.70 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=38.7 Q ss_pred HHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHCCC--CEEEEEE Q ss_conf 21899999999984189889508899999999999998542356--3125764 Q gi|254780373|r 116 FLETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIEERVKLRSQG--FVSSVIF 166 (172) Q Consensus 116 ~~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el~~~in~~~~g--~V~~V~F 166 (172) ....|++.+-..|.+.+|+.-..+.--..|.++|++++..+.+. -|-.+++ T Consensus 18 V~~ii~~~l~~~L~~~~Y~~~~~~~~~~~I~~~i~~~lk~l~~ryK~Vv~v~I 70 (114) T 1xdx_A 18 VSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFKYVVTCII 70 (114) T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEEE T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 99999999999758886596899999999999999999840898299999999 No 10 >2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens} Probab=13.69 E-value=57 Score=12.71 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHCCCHHHHCCHHHHHHHHH Q ss_conf 1899999999984189889508899999999 Q gi|254780373|r 117 LETLHQDIMAYIRTVSIKQITGAQGFRYFKE 147 (172) Q Consensus 117 ~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~ 147 (172) |..+||.++.+|...+.++++ .-|.+|++ T Consensus 1 m~~~r~~Ll~~Le~L~~~elk--kFK~~L~~ 29 (89) T 2hm2_Q 1 MGTKREAILKVLENLTPEELK--KFKMKLGT 29 (89) T ss_dssp CCSHHHHHHHHHTTSCHHHHH--HHHHHTTT T ss_pred CCHHHHHHHHHHHHHCHHHHH--HHHHHHCC T ss_conf 935999999999870799999--99999867 Done!