Query         gi|254780373|ref|YP_003064786.1| flagellar basal body-associated protein FliL [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 172
No_of_seqs    118 out of 496
Neff          7.8 
Searched_HMMs 23785
Date          Mon May 30 10:22:35 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780373.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3pe5_A Uncharacterized protein  73.7     0.8 3.3E-05   22.8   0.8   15   19-33     36-50  (403)
  2 3gxq_A Putative regulator of t  60.4     4.4 0.00019   18.7   2.5   33  117-150    19-51  (54)
  3 3owq_A LIN1025 protein; struct  51.6     2.8 0.00012   19.9   0.2   29  123-152   199-227 (321)
  4 1rz2_A Conserved hypothetical   34.5     9.7 0.00041   16.9   0.8   14  139-152   199-212 (254)
  5 2w3z_A Putative deacetylase; P  32.1      16 0.00069   15.6   1.7   13  142-154   183-195 (311)
  6 3h9i_A Cation efflux system pr  25.0      12 0.00052   16.3   0.0   10   17-26      3-12  (407)
  7 2cvc_A Cytochrome CC3, high-mo  24.3      13 0.00055   16.2   0.0   22   12-33      3-24  (545)
  8 2knc_A Integrin alpha-IIB; tra  15.1      53  0.0022   12.9   2.9   29   15-43      9-37  (54)
  9 1xdx_A Tctex1 light chain prot  13.9      57  0.0024   12.7   6.0   51  116-166    18-70  (114)
 10 2hm2_Q ASC2, pyrin-only protei  13.7      57  0.0024   12.7   1.3   29  117-147     1-29  (89)

No 1  
>3pe5_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; 2.38A {Clostridium leptum}
Probab=73.70  E-value=0.8  Score=22.81  Aligned_cols=15  Identities=13%  Similarity=0.222  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|254780373|r   19 FVTWFVVYTFIGIFC   33 (172)
Q Consensus        19 ~Iii~~vv~ll~~g~   33 (172)
                      +++++++++++++++
T Consensus        36 ~i~~~~~ll~~~~~g   50 (403)
T 3pe5_A           36 VIIIILCVVFSGLGG   50 (403)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 2  
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=60.41  E-value=4.4  Score=18.74  Aligned_cols=33  Identities=15%  Similarity=0.387  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHH
Q ss_conf             1899999999984189889508899999999999
Q gi|254780373|r  117 LETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIE  150 (172)
Q Consensus       117 ~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el~  150 (172)
                      -|.++|.|+.|-.++.++.++ ..|++.|+.-+.
T Consensus        19 dpdmkdeiikyaqekdfdnvs-qagreilkkgle   51 (54)
T 3gxq_A           19 DPDMKDEIIKYAQEKDFDNVS-QAGREILKKGLE   51 (54)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHH
T ss_conf             874158999988871610588-989999997787


No 3  
>3owq_A LIN1025 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; 2.61A {Listeria innocua} PDB: 3nro_A
Probab=51.62  E-value=2.8  Score=19.87  Aligned_cols=29  Identities=21%  Similarity=0.261  Sum_probs=10.7

Q ss_pred             HHHHHHHCCCHHHHCCHHHHHHHHHHHHHH
Q ss_conf             999998418988950889999999999999
Q gi|254780373|r  123 DIMAYIRTVSIKQITGAQGFRYFKEDIEER  152 (172)
Q Consensus       123 ~il~~L~~~~~~dl~~~~Gk~~Lk~el~~~  152 (172)
                      ..+.|.|....+. .+.-||.+-+++.+..
T Consensus       199 ~Al~y~R~R~~~~-~gD~~R~~rQq~~l~a  227 (321)
T 3owq_A          199 DALQYVRIRHEDP-RGDFGRQDRQRDVIIG  227 (321)
T ss_dssp             HHHHHHTCCTTCT-THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCC-CCCHHHHHHHHHHHHH
T ss_conf             9866001206788-8637699999999999


No 4  
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, protein structure initiative; 1.60A {Bacillus anthracis str} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Probab=34.47  E-value=9.7  Score=16.90  Aligned_cols=14  Identities=29%  Similarity=0.546  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             89999999999999
Q gi|254780373|r  139 AQGFRYFKEDIEER  152 (172)
Q Consensus       139 ~~Gk~~Lk~el~~~  152 (172)
                      .+..+.+-++++++
T Consensus       199 ~~~~~~~~~~~~~~  212 (254)
T 1rz2_A          199 DTEYTSFLEKIQEK  212 (254)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             78889999998751


No 5  
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=32.10  E-value=16  Score=15.64  Aligned_cols=13  Identities=0%  Similarity=0.061  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999985
Q gi|254780373|r  142 FRYFKEDIEERVK  154 (172)
Q Consensus       142 k~~Lk~el~~~in  154 (172)
                      .+.+++||....+
T Consensus       183 ~~~~~~ei~~~~~  195 (311)
T 2w3z_A          183 TQQIVSEVTRTQN  195 (311)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999


No 6  
>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B
Probab=24.98  E-value=12  Score=16.31  Aligned_cols=10  Identities=10%  Similarity=-0.071  Sum_probs=3.4

Q ss_pred             HHHHHHHHHH
Q ss_conf             0599999999
Q gi|254780373|r   17 KLFVTWFVVY   26 (172)
Q Consensus        17 kl~Iii~~vv   26 (172)
                      |+.++++.++
T Consensus         3 k~~~~~~~~~   12 (407)
T 3h9i_A            3 KIALIIGSMI   12 (407)
T ss_dssp             ----------
T ss_pred             CHHHHHHHHH
T ss_conf             0699999999


No 7  
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor; electron transport; HET: HEM; 2.00A {Desulfovibrio vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Probab=24.26  E-value=13  Score=16.19  Aligned_cols=22  Identities=14%  Similarity=0.145  Sum_probs=11.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             6763205999999999999999
Q gi|254780373|r   12 RGNQHKLFVTWFVVYTFIGIFC   33 (172)
Q Consensus        12 kG~~~kl~Iii~~vv~ll~~g~   33 (172)
                      +|++...|+++++|++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~   24 (545)
T 2cvc_A            3 NGRTLLRWAGVLAATAIIGVGG   24 (545)
T ss_dssp             ----------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
T ss_conf             5203699999999999998887


No 8  
>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens}
Probab=15.11  E-value=53  Score=12.89  Aligned_cols=29  Identities=3%  Similarity=-0.175  Sum_probs=11.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32059999999999999999999999706
Q gi|254780373|r   15 QHKLFVTWFVVYTFIGIFCGWLGGIVMLF   43 (172)
Q Consensus        15 ~~kl~Iii~~vv~ll~~g~g~~~~~~~~~   43 (172)
                      ..-++||++.++..+.+-+...+..|..+
T Consensus         9 ~vP~WiIivsv~~GlLlL~ll~~~LwK~G   37 (54)
T 2knc_A            9 AIPIWWVLVGVLGGLLLLTILVLAMWKVG   37 (54)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             88730469999999999999999999827


No 9  
>1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer, solution structure, contractIle protein; NMR {Chlamydomonas reinhardtii}
Probab=13.89  E-value=57  Score=12.70  Aligned_cols=51  Identities=14%  Similarity=0.125  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHCCC--CEEEEEE
Q ss_conf             21899999999984189889508899999999999998542356--3125764
Q gi|254780373|r  116 FLETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIEERVKLRSQG--FVSSVIF  166 (172)
Q Consensus       116 ~~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el~~~in~~~~g--~V~~V~F  166 (172)
                      ....|++.+-..|.+.+|+.-..+.--..|.++|++++..+.+.  -|-.+++
T Consensus        18 V~~ii~~~l~~~L~~~~Y~~~~~~~~~~~I~~~i~~~lk~l~~ryK~Vv~v~I   70 (114)
T 1xdx_A           18 VSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFKYVVTCII   70 (114)
T ss_dssp             HHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf             99999999999758886596899999999999999999840898299999999


No 10 
>2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens}
Probab=13.69  E-value=57  Score=12.71  Aligned_cols=29  Identities=7%  Similarity=0.116  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHCCHHHHHHHHH
Q ss_conf             1899999999984189889508899999999
Q gi|254780373|r  117 LETLHQDIMAYIRTVSIKQITGAQGFRYFKE  147 (172)
Q Consensus       117 ~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~  147 (172)
                      |..+||.++.+|...+.++++  .-|.+|++
T Consensus         1 m~~~r~~Ll~~Le~L~~~elk--kFK~~L~~   29 (89)
T 2hm2_Q            1 MGTKREAILKVLENLTPEELK--KFKMKLGT   29 (89)
T ss_dssp             CCSHHHHHHHHHTTSCHHHHH--HHHHHTTT
T ss_pred             CCHHHHHHHHHHHHHCHHHHH--HHHHHHCC
T ss_conf             935999999999870799999--99999867


Done!