Query gi|254780373|ref|YP_003064786.1| flagellar basal body-associated protein FliL [Candidatus Liberibacter asiaticus str. psy62] Match_columns 172 No_of_seqs 118 out of 496 Neff 7.8 Searched_HMMs 13730 Date Wed Jun 1 05:23:02 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780373.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1wina_ d.43.2.1 (A:) Flotilli 8.7 50 0.0037 11.7 9.2 51 117-169 69-122 (143) 2 d2j5ya1 a.8.1.2 (A:1-53) PAB { 8.5 52 0.0038 11.6 2.6 19 134-152 33-51 (53) 3 d1wyub1 c.67.1.7 (B:2-472) Gly 8.2 53 0.0039 11.6 2.5 48 124-171 323-378 (471) 4 d1cota_ a.3.1.1 (A:) Cytochrom 7.4 58 0.0042 11.4 1.3 14 121-134 107-120 (121) 5 d1ucpa_ a.77.1.5 (A:) Apoptosi 4.9 81 0.0059 10.6 2.1 28 118-147 2-29 (91) 6 d1wi9a_ a.4.5.47 (A:) Hypothet 4.9 82 0.006 10.5 0.4 44 121-164 9-54 (72) 7 d1cgme_ a.24.5.1 (E:) Cucumber 4.2 92 0.0067 10.3 1.8 12 119-130 120-131 (160) 8 d1ei7a_ a.24.5.1 (A:) Tobacco 3.8 1E+02 0.0073 10.1 2.0 12 119-130 120-131 (158) 9 d2c1xa1 c.87.1.10 (A:7-456) UD 3.7 93 0.0068 10.2 -0.2 31 117-149 393-423 (450) 10 d1gjsa_ a.8.1.2 (A:) IgG bindi 3.7 1E+02 0.0075 10.0 2.4 17 136-152 47-63 (65) No 1 >d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Probab=8.72 E-value=50 Score=11.70 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=37.4 Q ss_pred HHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHCC--C-CEEEEEEEEE Q ss_conf 189999999998418988950889999999999999854235--6-3125764322 Q gi|254780373|r 117 LETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIEERVKLRSQ--G-FVSSVIFRTF 169 (172) Q Consensus 117 ~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el~~~in~~~~--g-~V~~V~Ft~f 169 (172) .+.+++.+=..+++.+++++-+ .|+.+.+++++.++.... | .|.+|.++++ T Consensus 69 ~~~~~~~lR~vig~~~l~el~~--~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI 122 (143) T d1wina_ 69 LQTLEGHLRSILGTLTVEQIYQ--DRDQFAKLVREVAAPDVGRMGIEILSFTIKDV 122 (143) T ss_dssp HHHHHHHHHHHHHHSCHHHHHH--THHHHHHHHHHHHHHHHTTTTEEEEEEECCCE T ss_pred HHHHHHHHHHHHCCCCHHHHHH--CHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEC T ss_conf 9999999998752366899985--79999999999999999973818989999961 No 2 >d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]} Probab=8.46 E-value=52 Score=11.64 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=14.9 Q ss_pred HHHCCHHHHHHHHHHHHHH Q ss_conf 8950889999999999999 Q gi|254780373|r 134 KQITGAQGFRYFKEDIEER 152 (172) Q Consensus 134 ~dl~~~~Gk~~Lk~el~~~ 152 (172) +.-.+.+|...||.||+.. T Consensus 33 nkaKTVEgV~aLK~Eilka 51 (53) T d2j5ya1 33 NKAKTVEEVNALKNEILKA 51 (53) T ss_dssp HHCCSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHC T ss_conf 7421488899999999870 No 3 >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} Probab=8.22 E-value=53 Score=11.58 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=31.4 Q ss_pred HHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHH----HCCCC----EEEEEEEEEEC Q ss_conf 99998418988950889999999999999854----23563----12576432201 Q gi|254780373|r 124 IMAYIRTVSIKQITGAQGFRYFKEDIEERVKL----RSQGF----VSSVIFRTFII 171 (172) Q Consensus 124 il~~L~~~~~~dl~~~~Gk~~Lk~el~~~in~----~~~g~----V~~V~Ft~fVv 171 (172) .+..++.--+-.+-+++|..++.+.+..+.+. +.... -..-+|.+||+ T Consensus 323 aL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~~~ff~EFvv 378 (471) T d1wyub1 323 FLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVA 378 (471) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEE T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEE T ss_conf 99999999999971815677879999999999999875459320567650267743 No 4 >d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]} Probab=7.37 E-value=58 Score=11.36 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=11.0 Q ss_pred HHHHHHHHHCCCHH Q ss_conf 99999998418988 Q gi|254780373|r 121 HQDIMAYIRTVSIK 134 (172) Q Consensus 121 rd~il~~L~~~~~~ 134 (172) |.+|+.||++.+.+ T Consensus 107 ~~dliAYLks~~~~ 120 (121) T d1cota_ 107 QADVVAFLAQNSPD 120 (121) T ss_dssp HHHHHHHHHHTCTT T ss_pred HHHHHHHHHHCCCC T ss_conf 99999999873888 No 5 >d1ucpa_ a.77.1.5 (A:) Apoptosis-associated speck-like protein Asc {Human (Homo sapiens) [TaxId: 9606]} Probab=4.95 E-value=81 Score=10.57 Aligned_cols=28 Identities=4% Similarity=0.051 Sum_probs=18.1 Q ss_pred HHHHHHHHHHHHCCCHHHHCCHHHHHHHHH Q ss_conf 899999999984189889508899999999 Q gi|254780373|r 118 ETLHQDIMAYIRTVSIKQITGAQGFRYFKE 147 (172) Q Consensus 118 p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~ 147 (172) ..+|+.++.+|...+.+++. .-|..|++ T Consensus 2 ~~~r~~Ll~~Le~L~~~Elk--kFK~~L~~ 29 (91) T d1ucpa_ 2 GRARDAILDALENLTAEELK--KFKLKLLS 29 (91) T ss_dssp CHHHHHHHHHHHHSCHHHHH--HHHHHTTT T ss_pred CHHHHHHHHHHHHCCHHHHH--HHHHHHCC T ss_conf 36999999999870499999--99998775 No 6 >d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Probab=4.89 E-value=82 Score=10.55 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=25.2 Q ss_pred HHHHHHHHHCCCHHHHCCHHHHHHHH-HHHHHHHH-HHCCCCEEEE Q ss_conf 99999998418988950889999999-99999985-4235631257 Q gi|254780373|r 121 HQDIMAYIRTVSIKQITGAQGFRYFK-EDIEERVK-LRSQGFVSSV 164 (172) Q Consensus 121 rd~il~~L~~~~~~dl~~~~Gk~~Lk-~el~~~in-~~~~g~V~~V 164 (172) -..++.++..+..-.|........|| ++..+|++ ....|++..| T Consensus 9 L~~FI~~Ik~~Kvv~LedLAa~F~lktqd~i~RIq~Le~~g~ltGV 54 (72) T d1wi9a_ 9 LTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGV 54 (72) T ss_dssp HHHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEE T ss_pred HHHHHHHHHHCCEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 9999999998787639999988299679999999999987986557 No 7 >d1cgme_ a.24.5.1 (E:) Cucumber green mottle mosaic virus {Cucumber green mottle mosaic virus, strain watermelon [TaxId: 12235]} Probab=4.24 E-value=92 Score=10.28 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=7.5 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999999841 Q gi|254780373|r 119 TLHQDIMAYIRT 130 (172) Q Consensus 119 ~Ird~il~~L~~ 130 (172) .||+.|..+|.. T Consensus 120 Air~~I~nL~~~ 131 (160) T d1cgme_ 120 AARAEIDNLIES 131 (160) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 8 >d1ei7a_ a.24.5.1 (A:) Tobacco mosaic virus coat protein {Tobacco mosaic virus, vulgare strain [TaxId: 12242]} Probab=3.80 E-value=1e+02 Score=10.06 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=6.6 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999999841 Q gi|254780373|r 119 TLHQDIMAYIRT 130 (172) Q Consensus 119 ~Ird~il~~L~~ 130 (172) .||+.|..+|.. T Consensus 120 Air~~I~nL~~~ 131 (158) T d1ei7a_ 120 AIRSAINNLIVE 131 (158) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 9 >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} Probab=3.75 E-value=93 Score=10.25 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=19.0 Q ss_pred HHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHH Q ss_conf 189999999998418988950889999999999 Q gi|254780373|r 117 LETLHQDIMAYIRTVSIKQITGAQGFRYFKEDI 149 (172) Q Consensus 117 ~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el 149 (172) ...|++.|..+|..-++.+... -..+|++.. T Consensus 393 ~~~l~~ai~~vL~d~~y~~~~~--r~~~l~~~~ 423 (450) T d2c1xa1 393 KSGLMSCFDQILSQEKGKKLRE--NLRALRETA 423 (450) T ss_dssp HHHHHHHHHHHHHSHHHHHHHH--HHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHH--HHHHHHHHH T ss_conf 9999999999961947999999--999999999 No 10 >d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]} Probab=3.67 E-value=1e+02 Score=10.00 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=14.0 Q ss_pred HCCHHHHHHHHHHHHHH Q ss_conf 50889999999999999 Q gi|254780373|r 136 ITGAQGFRYFKEDIEER 152 (172) Q Consensus 136 l~~~~Gk~~Lk~el~~~ 152 (172) -.|.+|...|+.+|+.. T Consensus 47 AKTVEGV~aLk~eIl~a 63 (65) T d1gjsa_ 47 AKTVEGVKALIDEILAA 63 (65) T ss_dssp CCSHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHC T ss_conf 00487799999999861 Done!