BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780373|ref|YP_003064786.1| flagellar basal
body-associated protein FliL [Candidatus Liberibacter asiaticus str.
psy62]
         (172 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780373|ref|YP_003064786.1| flagellar basal body-associated protein FliL [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 172

 Score =  353 bits (905), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 172/172 (100%), Positives = 172/172 (100%)

Query: 1   MSYDDTTSQYIRGNQHKLFVTWFVVYTFIGIFCGWLGGIVMLFLFAGQKEEKYQKFILNN 60
           MSYDDTTSQYIRGNQHKLFVTWFVVYTFIGIFCGWLGGIVMLFLFAGQKEEKYQKFILNN
Sbjct: 1   MSYDDTTSQYIRGNQHKLFVTWFVVYTFIGIFCGWLGGIVMLFLFAGQKEEKYQKFILNN 60

Query: 61  FYDNSVRSVHTGDTISLKKLQIFSLQPIITNFDSSPKDWLRLDIALICKDIPDKVFLETL 120
           FYDNSVRSVHTGDTISLKKLQIFSLQPIITNFDSSPKDWLRLDIALICKDIPDKVFLETL
Sbjct: 61  FYDNSVRSVHTGDTISLKKLQIFSLQPIITNFDSSPKDWLRLDIALICKDIPDKVFLETL 120

Query: 121 HQDIMAYIRTVSIKQITGAQGFRYFKEDIEERVKLRSQGFVSSVIFRTFIIA 172
           HQDIMAYIRTVSIKQITGAQGFRYFKEDIEERVKLRSQGFVSSVIFRTFIIA
Sbjct: 121 HQDIMAYIRTVSIKQITGAQGFRYFKEDIEERVKLRSQGFVSSVIFRTFIIA 172


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1828

 Score = 26.9 bits (58), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 10/55 (18%)

Query: 48   QKEEKYQKFILNNFYDNSVR---------SVHTGDTISLKKLQIFSLQPIITNFD 93
            Q+EEK+    L++F DN  R         S HT ++ SL + +I  ++ +++N D
Sbjct: 1168 QREEKFHS-ALDSFSDNISRILLDVDHTISSHTNESRSLIEQRIHEVKDVLSNLD 1221


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 25.4 bits (54), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 121 HQDIMAYIRTVSIKQITGAQGFRYFKEDI 149
           H+D +  I   +I   TGA+G R   E I
Sbjct: 350 HEDALREIARCAIAHKTGARGLRSILEKI 378


>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 750

 Score = 21.6 bits (44), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 62  YDNSVRSVHTGDTISLKKLQIFSLQPIITNFDSSPKDWLRLDIALI 107
           Y N  RS+H  +  S   ++  S Q  I    +S  D+  L+I  I
Sbjct: 469 YANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTI 514


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.328    0.143    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,859
Number of Sequences: 1233
Number of extensions: 4460
Number of successful extensions: 13
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 172
length of database: 328,796
effective HSP length: 68
effective length of query: 104
effective length of database: 244,952
effective search space: 25475008
effective search space used: 25475008
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 35 (18.1 bits)