HHsearch alignment for GI: 254780374 and conserved domain: TIGR02747
>TIGR02747 TraV type IV conjugative transfer system protein TraV; InterPro: IPR014118 This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK , , . The alignment contains three conserved cysteines in the N-terminal half..
Probab=90.43 E-value=0.16 Score=29.51 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHH--HHHHCC
Q ss_conf 91179999999999--854336
Q gi|254780374|r 1 MYRYSFIVLCYSSL--LFGCHS 20 (238)
Q Consensus 1 M~r~~l~~l~~~~l--L~GCas 20 (238)
T Consensus 1 Mmr~~~L~~~~~~~f~LtGCsa 22 (174)
T TIGR02747 1 MMRLKVLLLLACVAFLLTGCSA 22 (174)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9067899999999872002577