HHsearch alignment for GI: 254780374 and conserved domain: pfam02107
>pfam02107 FlgH Flagellar L-ring protein.
Probab=100.00 E-value=0 Score=407.39 Aligned_cols=178 Identities=35% Similarity=0.537 Sum_probs=166.8
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44455761215775-52112322367687699999724101000012223456544555433345544556665546555
Q gi|254780374|r 55 DSTKKSYSLWRDSH-AALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYD 133 (238)
Q Consensus 55 ~~~~~~gSL~~~~~-~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (238)
T Consensus 3 ~~~~~~GSl~~~~~~~~lf~D~rA~~VGDivTV~i~E~~~A~~s~~t~~~r~~~~~~~~~~~~g~~~-----~~~~~~~~ 77 (181)
T pfam02107 3 PPAPANGSLYQAGSARPLFEDRRARRVGDILTVVLSENTSASKSASTSTSRSSSISLGIPTLFGLGG-----LSLSLGAS 77 (181)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCC
T ss_conf 8988997532589866542455324589869999998044321145430334443315643257777-----66321346
Q ss_pred CCCCCCCCHHEECEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEE
Q ss_conf 55432110000000148999999999980797289978877984188799999979847767899738242055439998
Q gi|254780374|r 134 GGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISY 213 (238)
Q Consensus 134 ~~~~~~g~G~~~~~~~l~~~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y 213 (238)
T Consensus 78 ~~~~~~G~G~~~~~~~lt~~ita~V~~VlpNGnLvI~G~K~i~vn~e~e~i~lsGiVRp~DI~~~NtV~S~~IAdA~I~y 157 (181)
T pfam02107 78 SSSSFKGSGSASQSNTLTGTITVTVTDVLPNGNLVIRGEKEVRVNQGDEYIRLSGIVRPEDISPDNTVSSTRIADARIEY 157 (181)
T ss_pred CCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCEECCCEEEEEEEEE
T ss_conf 55434564305333069999999999986899899999999998998899999999998997999759600335589998
Q ss_pred ECEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 020331233486668999998558
Q gi|254780374|r 214 GGKGRTTELLRPPIGHQLIENLSP 237 (238)
Q Consensus 214 ~g~G~~~d~~~~gwl~r~~~~i~P 237 (238)
T Consensus 158 ~G~G~l~d~~~~gwl~r~~~~i~P 181 (181)
T pfam02107 158 GGRGAIADAQQPGWLQRFFDSVWP 181 (181)
T ss_pred ECEEEECCCCCCCHHHHHHHHHCC
T ss_conf 010523644367999999886683