Query gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 238 No_of_seqs 135 out of 642 Neff 6.7 Searched_HMMs 33803 Date Wed Jun 1 12:27:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780374.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2elf_A Protein translation el 57.1 13 0.00038 17.1 4.6 36 153-188 34-81 (94) 2 >1ah9_A IF1, initiation factor 46.9 15 0.00044 16.6 2.6 45 152-201 6-52 (71) 3 >3i4o_A Translation initiation 46.7 19 0.00055 16.0 3.4 58 152-214 14-77 (79) 4 >2wg5_A General control protei 42.9 20 0.00059 15.8 2.7 46 154-204 3-48 (73) 5 >2f2f_C CDT C, cytolethal dist 40.7 14 0.00042 16.7 1.7 21 1-23 1-21 (186) 6 >1kaf_A Transcription regulato 33.3 30 0.00089 14.7 2.6 19 156-174 46-64 (108) 7 >2vx5_A Cellvibrio japonicus m 29.0 17 0.0005 16.3 0.5 29 207-235 307-335 (396) 8 >3h43_A Proteasome-activating 28.4 36 0.0011 14.2 3.4 44 154-202 3-46 (68) 9 >2w7y_A FCSSBP, probable sugar 27.7 15 0.00044 16.7 0.0 19 4-22 9-27 (185) 10 >1hr0_W Translation initiation 24.5 11 0.00034 17.3 -1.0 37 154-196 9-46 (71) 11 >1q02_A Sequestosome 1; helica 23.9 36 0.0011 14.2 1.4 13 223-235 24-36 (52) 12 >1vlb_A Aldehyde oxidoreductas 23.7 44 0.0013 13.7 2.3 32 68-99 73-104 (196) 13 >3dzw_A Agglutinin; lectin, ma 23.7 44 0.0013 13.7 2.1 18 156-173 83-100 (109) 14 >1kj1_A Lectin I, lecgna 1; BU 23.5 45 0.0013 13.6 1.9 18 156-173 84-101 (109) 15 >1m9s_A Internalin B; cell inv 23.5 38 0.0011 14.1 1.5 27 169-198 51-77 (86) 16 >2i3y_A Epididymal secretory g 22.1 34 0.001 14.3 1.0 19 1-19 1-19 (215) 17 >1n7z_A Baseplate structural p 21.8 48 0.0014 13.4 1.7 13 74-86 2-14 (104) 18 >2ijr_A Hypothetical protein A 21.7 48 0.0014 13.4 1.8 14 11-24 12-25 (157) 19 >1ffv_B CUTL, molybdoprotein o 21.4 49 0.0014 13.4 2.3 34 68-101 69-102 (205) 20 >1t3q_B Quinoline 2-oxidoreduc 21.0 50 0.0015 13.3 2.2 33 68-100 100-132 (216) 21 >2w3s_B Xanthine dehydrogenase 20.3 52 0.0015 13.2 2.4 34 68-101 58-91 (192) No 1 >>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} (A:277-370) Probab=57.05 E-value=13 Score=17.07 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=31.1 Q ss_pred EEEEEEEEECCCC------------CEEEEEEEEEEEECCEEEEEEEE Q ss_conf 9999999980797------------28997887798418879999997 Q gi|254780374|r 153 LIAAIVTAILENG------------NLIISGSQEVRVNDEIRSLNVTG 188 (238) Q Consensus 153 ~isa~V~~VlpNG------------nL~I~G~k~i~vn~e~~~i~isG 188 (238) ++.|+|+.+.-|| -+.+++.|.+..+.+.++|...+ T Consensus 34 svp~~V~~~~~~~~~~~~~~~g~~c~l~lkl~k~Vay~~gDr~li~~l 81 (94) T 2elf_A 34 SEPVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLANL 81 (94) T ss_dssp EEEEEEEEEEETTEEESCBCTTCEEEEEEEEEEEEEECTTSCEEEECT T ss_pred EEEEEEEEEECCCCCCEEECCCCEEEEEEEECCCEEECCCCEEEEEEC T ss_conf 999999999527863146279998999999898487568999999989 No 2 >>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} (A:) Probab=46.86 E-value=15 Score=16.64 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=31.9 Q ss_pred EEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHH--HCCCCCEE Q ss_conf 999999999807972899788779841887999999798477--67899738 Q gi|254780374|r 152 LLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQ--DVDAHNSV 201 (238) Q Consensus 152 ~~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~--DI~~~NtV 201 (238) ..+.+.|++.||||++.|+ --|+....-+++|-+|-. -|.++..| T Consensus 6 ~e~~G~V~~~L~~~~f~V~-----l~dg~~~~a~i~GKmRk~ri~I~~GD~V 52 (71) T 1ah9_A 6 IEMQGTVLETLPNTMFRVE-----LENGHVVTAHISGKMRKNYIRILTGDKV 52 (71) T ss_dssp EECCEEEEEECSSSEEEEE-----ETTSCEEEEEECSSGGGTTCCCCTTCEE T ss_pred EEEEEEEEEECCCCEEEEE-----ECCCCEEEEECCCHHHEEEEEECCCCEE T ss_conf 8999999998699789999-----5799799998464233027996499999 No 3 >>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} (A:) Probab=46.69 E-value=19 Score=16.04 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=40.8 Q ss_pred EEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHH--HCCCCCEE----EHHEEEEEEEEEE Q ss_conf 999999999807972899788779841887999999798477--67899738----2420554399980 Q gi|254780374|r 152 LLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQ--DVDAHNSV----SYDKIAEARISYG 214 (238) Q Consensus 152 ~~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~--DI~~~NtV----~S~~iAda~I~y~ 214 (238) ..+..+|++.||||++.|+- -|+....-+++|-.|-. -|.++..| +..+.--++|.|. T Consensus 14 ~e~~G~V~~~L~~~~f~V~l-----~dg~~~~~~i~GKmrk~rI~I~~GD~V~Ve~~~yd~~kg~Ii~R 77 (79) T 3i4o_A 14 IEVEGRVVEPLPNAMFRIEL-----ENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYR 77 (79) T ss_dssp SEEEEEEEEEETTTEEEEEE-----TTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEEE T ss_pred EEEEEEEEEECCCCEEEEEE-----CCCCEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEEE T ss_conf 99999999988998899997-----89999999714503575799449999999967777885889998 No 4 >>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A (A:37-109) Probab=42.89 E-value=20 Score=15.84 Aligned_cols=46 Identities=15% Similarity=0.387 Sum_probs=37.5 Q ss_pred EEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHH Q ss_conf 999999980797289978877984188799999979847767899738242 Q gi|254780374|r 154 IAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYD 204 (238) Q Consensus 154 isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~ 204 (238) +-++|+|++.++..+|+- -++.+.+..+++.|.++++.++..|.=. T Consensus 3 ~Vg~v~e~id~~~~IVk~-----s~g~~~~V~v~~~vd~~~Lkpg~rVal~ 48 (73) T 2wg5_A 3 LVGVVSDILEDGRVVVKS-----STGPKFVVNTSQYINEEELKPGARVALN 48 (73) T ss_dssp EEEEEEEECTTSCEEEEE-----TTSCEEEECBCTTSCTTTCCTTCEEEEE T ss_pred EEEEEEEEECCCCEEEEE-----CCCCEEEEEECCCCCHHHCCCCCEEEEC T ss_conf 699999995898289995-----7998899982167698898998999886 No 5 >>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} (C:) Probab=40.69 E-value=14 Score=16.74 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=13.3 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 91179999999999854336720 Q gi|254780374|r 1 MYRYSFIVLCYSSLLFGCHSSIS 23 (238) Q Consensus 1 M~r~~l~~l~~~~lL~GCas~~~ 23 (238) |+|++++.+. +++.||++... T Consensus 1 MkK~~i~f~~--~~i~~~ss~~~ 21 (186) T 2f2f_C 1 MKKYLLSFLL--SMILTLTSHAE 21 (186) T ss_dssp ----------------------- T ss_pred CCHHHHHHHH--HHHHHCCCCCC T ss_conf 9311699999--99986114665 No 6 >>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} (A:) Probab=33.27 E-value=30 Score=14.72 Aligned_cols=19 Identities=32% Similarity=0.253 Sum_probs=16.1 Q ss_pred EEEEEECCCCCEEEEEEEE Q ss_conf 9999980797289978877 Q gi|254780374|r 156 AIVTAILENGNLIISGSQE 174 (238) Q Consensus 156 a~V~~VlpNGnL~I~G~k~ 174 (238) -+=.||+-||+|.|.|.|. T Consensus 46 iR~fEI~n~G~~RIfgYkm 64 (108) T 1kaf_A 46 IRNFEINNNGNMRIFGYKM 64 (108) T ss_dssp EEEEEECTTSEEEEEEESC T ss_pred EEEEEEECCCCEEEEEEEC T ss_conf 2689982488189986513 No 7 >>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* (A:) Probab=29.03 E-value=17 Score=16.30 Aligned_cols=29 Identities=7% Similarity=0.029 Sum_probs=19.6 Q ss_pred EEEEEEEECEEEECCCCCCCHHHHHHHHH Q ss_conf 54399980203312334866689999985 Q gi|254780374|r 207 AEARISYGGKGRTTELLRPPIGHQLIENL 235 (238) Q Consensus 207 Ada~I~y~g~G~~~d~~~~gwl~r~~~~i 235 (238) .+..|..+--|......++.|+.++++.+ T Consensus 307 ~~~Pi~itE~G~~~~~~~~~~~~~~~~~~ 335 (396) T 2vx5_A 307 KGKIAALTETGNNRLTIDNFWTERLLGPI 335 (396) T ss_dssp HTCEEEEEEECCTTCCSTTHHHHTTHHHH T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHH T ss_conf 79818994226678886367899887898 No 8 >>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii} (A:18-85) Probab=28.40 E-value=36 Score=14.21 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=36.1 Q ss_pred EEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEE Q ss_conf 9999999807972899788779841887999999798477678997382 Q gi|254780374|r 154 IAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVS 202 (238) Q Consensus 154 isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~ 202 (238) +-++|+|++..+..+|.-. ++.+.+..+++.|.++++.++..|. T Consensus 3 ~Vg~v~e~id~~~~IVkss-----~g~~~~V~v~~~vd~~~Lkpg~rVa 46 (68) T 3h43_A 3 IVGTVVDKVGERKVVVKSS-----TGPSFLVNVSHFVNPDDLAPGKRVC 46 (68) T ss_dssp EEEEEEEEEETTEEEEEET-----TSSEEEEEBCTTSCGGGCCTTCEEE T ss_pred EEEEEEEEECCCEEEEEEC-----CCCEEEEEECCCCCHHHCCCCCEEE T ss_conf 8999999828983999967-----9998999806987978989999999 No 9 >>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} (A:1-143,A:308-349) Probab=27.66 E-value=15 Score=16.67 Aligned_cols=19 Identities=11% Similarity=-0.214 Sum_probs=11.4 Q ss_pred HHHHHHHHHHHHHHHCCCC Q ss_conf 7999999999985433672 Q gi|254780374|r 4 YSFIVLCYSSLLFGCHSSI 22 (238) Q Consensus 4 ~~l~~l~~~~lL~GCas~~ 22 (238) ++.++++++++|+||+... T Consensus 9 ~~~~~l~~al~LagCgg~~ 27 (185) T 2w7y_A 9 HHSSGLVPRGSHXASGTSK 27 (185) T ss_dssp ------------------- T ss_pred HHHHHHHHCCCCCCCCCCC T ss_conf 0577788612774467889 No 10 >>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} (W:) Probab=24.52 E-value=11 Score=17.35 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=19.3 Q ss_pred EEEEEEEECCCCCEEEEEEEEEEEECCEE-EEEEEEEECHHHCC Q ss_conf 99999998079728997887798418879-99999798477678 Q gi|254780374|r 154 IAAIVTAILENGNLIISGSQEVRVNDEIR-SLNVTGIVRPQDVD 196 (238) Q Consensus 154 isa~V~~VlpNGnL~I~G~k~i~vn~e~~-~i~isGiVRp~DI~ 196 (238) +...|+|.|||+++.|+ +.++.+ .-.+||-+|-.-|. T Consensus 9 ~eG~V~e~lpn~~F~V~------Leng~~vla~isGKmR~~~Ir 46 (71) T 1hr0_W 9 TEGVVTEALPNATFRVK------LDSGPEILAYISGKMRMHYIR 46 (71) T ss_dssp CEEECCCCCTTTBCCCE------ESSSCBCCCEECHHHHHTCCC T ss_pred EEEEEEEECCCCEEEEE------ECCCCEEEEEECCHHHHEEEE T ss_conf 99999998599799999------899999999957755301598 No 11 >>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} (A:) Probab=23.88 E-value=36 Score=14.22 Aligned_cols=13 Identities=8% Similarity=-0.123 Sum_probs=8.7 Q ss_pred CCCCHHHHHHHHH Q ss_conf 4866689999985 Q gi|254780374|r 223 LRPPIGHQLIENL 235 (238) Q Consensus 223 ~~~gwl~r~~~~i 235 (238) ..-|||+|+|... T Consensus 24 neGGWLtqLL~sk 36 (52) T 1q02_A 24 DEGGWLTRLLQTK 36 (52) T ss_dssp CTTSHHHHHHHHT T ss_pred CCCHHHHHHHHHC T ss_conf 7652999999980 No 12 >>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} (A:194-299,A:368-457) Probab=23.74 E-value=44 Score=13.67 Aligned_cols=32 Identities=9% Similarity=0.181 Sum_probs=26.1 Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCHHHHCCC Q ss_conf 55211232236768769999972410100001 Q gi|254780374|r 68 HAALFKDSRALNVGDILTVDIRIDDQAVFDNQ 99 (238) Q Consensus 68 ~~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~~ 99 (238) ..++|.|.+.+.+||.|-+++.|+......+- T Consensus 73 d~p~la~~~Vr~~GepVa~VvA~t~~~A~~Aa 104 (196) T 1vlb_A 73 DRPILCDEKVFQYGDCIALVCADSEANARAAA 104 (196) T ss_dssp CEESSCSSEECSTTCEEEEEEESSHHHHHHHH T ss_pred CCCCCCCCEEEEECCCEEEEEECCHHHHHHHH T ss_conf 66325687799934622799967999999987 No 13 >>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, daffodil, sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* (A:) Probab=23.73 E-value=44 Score=13.67 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=13.8 Q ss_pred EEEEEECCCCCEEEEEEE Q ss_conf 999998079728997887 Q gi|254780374|r 156 AIVTAILENGNLIISGSQ 173 (238) Q Consensus 156 a~V~~VlpNGnL~I~G~k 173 (238) +.+..++.+|||||.++- T Consensus 83 ~~~l~L~ddGNlvl~~~~ 100 (109) T 3dzw_A 83 NYVCVLQKDRNVVIYGTA 100 (109) T ss_dssp CEEEEECTTSCEEEEESC T ss_pred CEEEEECCCCCEEEECCC T ss_conf 889999489739997988 No 14 >>1kj1_A Lectin I, lecgna 1; BULB lectin, mannose, plant protein; HET: MAN; 2.20A {Allium sativum} (A:) Probab=23.45 E-value=45 Score=13.63 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=13.9 Q ss_pred EEEEEECCCCCEEEEEEE Q ss_conf 999998079728997887 Q gi|254780374|r 156 AIVTAILENGNLIISGSQ 173 (238) Q Consensus 156 a~V~~VlpNGnL~I~G~k 173 (238) +.+..++++|||||.+.- T Consensus 84 ~~~~~L~ddGNlvl~~~~ 101 (109) T 1kj1_A 84 NYVLVLQEDGNVVIYGSD 101 (109) T ss_dssp CCEEEECTTSCEEEECCE T ss_pred CEEEEEECCCCEEEECCC T ss_conf 689999189419997998 No 15 >>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} (A:520-605) Probab=23.45 E-value=38 Score=14.06 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=19.3 Q ss_pred EEEEEEEEEECCEEEEEEEEEECHHHCCCC Q ss_conf 978877984188799999979847767899 Q gi|254780374|r 169 ISGSQEVRVNDEIRSLNVTGIVRPQDVDAH 198 (238) Q Consensus 169 I~G~k~i~vn~e~~~i~isGiVRp~DI~~~ 198 (238) |+|+.|.+|.++..+| |+|+..+++.. T Consensus 51 v~g~~Wyrik~~~~~I---GWvKA~nL~~~ 77 (86) T 1m9s_A 51 IEGQLWYRIRTSSTFI---GWTKAANLRAQ 77 (86) T ss_dssp ETTEEEEEEECSSSEE---EEEEGGGEECC T ss_pred ECCCEEEEEEECCEEE---EEECHHHCCCC T ss_conf 5793699999699789---74546777763 No 16 >>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, structural genomics; 2.00A {Homo sapiens} (A:) Probab=22.11 E-value=34 Score=14.34 Aligned_cols=19 Identities=5% Similarity=-0.395 Sum_probs=12.1 Q ss_pred CCHHHHHHHHHHHHHHHHC Q ss_conf 9117999999999985433 Q gi|254780374|r 1 MYRYSFIVLCYSSLLFGCH 19 (238) Q Consensus 1 M~r~~l~~l~~~~lL~GCa 19 (238) |+|+++++++++++++++. T Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (215) T 2i3y_A 1 MHHHHHHSSGVDLGTENLY 19 (215) T ss_dssp ------------------- T ss_pred CCCCCCCCCCCCHHHHHHH T ss_conf 9754344555101236778 No 17 >>1n7z_A Baseplate structural protein GP8; bacteriophage T4, dimer, beta sandwich, viral protein; 2.00A {Enterobacteria phage T4} (A:101-204) Probab=21.80 E-value=48 Score=13.45 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=11.0 Q ss_pred CCCCCCCCCEEEE Q ss_conf 3223676876999 Q gi|254780374|r 74 DSRALNVGDILTV 86 (238) Q Consensus 74 D~RA~~VGDIiTV 86 (238) |++.+++||||+| T Consensus 2 np~~f~i~DIVv~ 14 (104) T 1n7z_A 2 DPYTFRINDIVVC 14 (104) T ss_dssp CSSCCCTTCEEEE T ss_pred CCCCCCCCCCCCC T ss_conf 4441346765446 No 18 >>2ijr_A Hypothetical protein API92; structural genomics, PSI, protein structure initiative; 2.70A {Yersinia pseudotuberculosis} (A:30-186) Probab=21.73 E-value=48 Score=13.42 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=10.0 Q ss_pred HHHHHHHHCCCCCC Q ss_conf 99998543367200 Q gi|254780374|r 11 YSSLLFGCHSSISE 24 (238) Q Consensus 11 ~~~lL~GCas~~~~ 24 (238) +-+||+|||.-+++ T Consensus 12 iqLFLAGCAGILkP 25 (157) T 2ijr_A 12 IRLFLAGCAGILKP 25 (157) T ss_dssp HHHHHHHHHTSSCC T ss_pred HHHHHHCCCCCCCC T ss_conf 99998510332455 No 19 >>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} (B:31-152,B:214-296) Probab=21.39 E-value=49 Score=13.37 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=27.1 Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCHHHHCCCCC Q ss_conf 5521123223676876999997241010000122 Q gi|254780374|r 68 HAALFKDSRALNVGDILTVDIRIDDQAVFDNQTG 101 (238) Q Consensus 68 ~~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~~~~ 101 (238) ..++|.|.|.+.+||.|-+++.|+..+-+.+... T Consensus 69 ~~~~~~~~~v~~~G~~va~VvA~~~~~A~~Aa~~ 102 (205) T 1ffv_B 69 VAAVLADEKVHFQMQEVAIVIADDRYIAADAVEA 102 (205) T ss_dssp EEESSCCSEECSTTCEEEEEEESSHHHHHHHHHH T ss_pred CCCCCCCCEEEECCCEEEEEEECCHHHHHHHHCC T ss_conf 6524778869977983899998999999998527 No 20 >>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} (B:1-133,B:201-283) Probab=20.98 E-value=50 Score=13.32 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=27.5 Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCHHHHCCCC Q ss_conf 552112322367687699999724101000012 Q gi|254780374|r 68 HAALFKDSRALNVGDILTVDIRIDDQAVFDNQT 100 (238) Q Consensus 68 ~~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~~~ 100 (238) ..++|.+.+.+.+||.|-+++.|+..+-..+-. T Consensus 100 ~~~~la~~~vr~~Gepva~Vva~t~~~a~~Aa~ 132 (216) T 1t3q_B 100 IQPLLANGVTRFVGEIVAVVVASSRAIAEDAAQ 132 (216) T ss_dssp EECSSCCSEECSTTCEEEEEEESSHHHHHHHHT T ss_pred CCCCCCCCEEEECCCEEEEEEECCHHHHHHHHC T ss_conf 641146887998798799999899999999823 No 21 >>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B* (B:25-125,B:176-266) Probab=20.31 E-value=52 Score=13.23 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=27.5 Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCHHHHCCCCC Q ss_conf 5521123223676876999997241010000122 Q gi|254780374|r 68 HAALFKDSRALNVGDILTVDIRIDDQAVFDNQTG 101 (238) Q Consensus 68 ~~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~~~~ 101 (238) ..++|.|.|-+.+||.|-+++.|+...-..+-.. T Consensus 58 d~p~la~~~Vr~~Gq~va~VvA~~~~~A~~Aa~~ 91 (192) T 2w3s_B 58 PEPVLATGEVHFVGQPIFLVAATSHRAARIAARK 91 (192) T ss_dssp CCCSSCCSEECSTTCEEEEEEESSHHHHHHHHTT T ss_pred CCCCCCCCEEEECCCEEEEEEECCHHHHHHHHCC T ss_conf 8603668879987987999998999999999526 Done!