RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring protein [Candidatus Liberibacter asiaticus str. psy62] (238 letters) >gnl|CDD|178946 PRK00249, flgH, flagellar basal body L-ring protein; Reviewed. Length = 222 Score = 218 bits (558), Expect = 1e-57 Identities = 85/228 (37%), Positives = 121/228 (53%), Gaps = 14/228 (6%) Query: 14 LLFGC--HSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSHAAL 71 LL GC + + G P +P+ + N + S ++ SLW + L Sbjct: 6 LLAGCASIPRLPLVGGAPAAAPVEAPTPLPNP--------APNGSIFQAGSLWNYGYQPL 57 Query: 72 FKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFG-QQTPQMNGNL 130 FKD RA NVGDILTV ++ + A N T RSR++S + G SLFG N +L Sbjct: 58 FKDRRARNVGDILTVVLQENTSASKSNSTNRSRDSSTN---FGLPSLFGYLNGLDANASL 114 Query: 131 NYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIV 190 + GKGS SR+ L I VT +L NGNL+I G +EVRVN L V+G+V Sbjct: 115 ETSSDNSFKGKGSASRSNTLTGTITVTVTQVLPNGNLVIRGEKEVRVNQGTEFLRVSGVV 174 Query: 191 RPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSPL 238 RP+D+ N++S +IA+ARISYGG+G ++ +P + ++LSP Sbjct: 175 RPRDISGDNTISSTRIADARISYGGRGYISDAQQPGWLQRFFDSLSPF 222 >gnl|CDD|171723 PRK12788, flgH, flagellar basal body L-ring protein; Reviewed. Length = 234 Score = 176 bits (447), Expect = 5e-45 Identities = 92/231 (39%), Positives = 136/231 (58%), Gaps = 17/231 (7%) Query: 14 LLFGCHSSISEITGIPQMSPMGSSLDENNR-MPFLGIDFKNSDSTKKSYSLWRDSHAALF 72 L GC +++++ P+MSP+G L + R +P + SLW D L+ Sbjct: 15 ALAGCANNLADALQAPRMSPIGQGLRADARAIPVE----PRMRTPVSRRSLW-DERTDLY 69 Query: 73 KDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLS-----GGFSLFGQQTPQMN 127 +D RA GD+LTV I ++D+A DN+T RSR++ L +S G+ T ++ Sbjct: 70 RDPRASRTGDLLTVTISMNDKATLDNKTDRSRDSQTKFGLDYLAEFLPWSDKGKLTANVS 129 Query: 128 GNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVT 187 ++ G G I R E++ +AAIV +L NGNL+ISGSQEVRVN E+R LNV Sbjct: 130 SQ------TSTKGTGKIDRTEEVKFSVAAIVVDVLPNGNLLISGSQEVRVNYEMRVLNVG 183 Query: 188 GIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSPL 238 GIVRP D+ +N+++Y+K+AEARISYGG+GR E+ +P GHQ+ + + P Sbjct: 184 GIVRPLDITRNNTIAYEKVAEARISYGGRGRLMEVQQPAWGHQVYDQVVPF 234 >gnl|CDD|171670 PRK12696, flgH, flagellar basal body L-ring protein; Reviewed. Length = 236 Score = 97.5 bits (243), Expect = 3e-21 Identities = 72/250 (28%), Positives = 114/250 (45%), Gaps = 29/250 (11%) Query: 1 MYRYSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKS 60 R L LL GC ++ + + P ++P + ++ G F +S++ Sbjct: 2 RKRLLATSLAVL-LLAGCSAARQQPSPAPPVTPPPAYVEPEEPADNPGSLFSDSEAD--- 57 Query: 61 YSLWRDSHAALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFG 120 LF DSRA VGDI+ V I + +A T + ++ +S + FG Sbjct: 58 ---------LLFADSRARRVGDIVLVKIVENSKAKNKADTTADKKSTNEYGVS---AFFG 105 Query: 121 QQTPQMNGNLNYDGGGAS-------------SGKGSISRAEKLNLLIAAIVTAILENGNL 167 Q + +N GGG SG G R + IAA V +L G + Sbjct: 106 QDSVAINPFNPLMGGGVGTDPLLKTSSTSKFSGTGETKRESTVTATIAARVVRVLPGGLM 165 Query: 168 IISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPI 227 + G++E RVNDE + + V+G+VRP+D+ NSV ++A+ARI Y GKG + RP Sbjct: 166 QVEGARETRVNDETQYIVVSGLVRPRDIGPDNSVMSTQLADARIEYYGKGVLADKQRPGW 225 Query: 228 GHQLIENLSP 237 +L++N+ P Sbjct: 226 FTRLMDNVWP 235 >gnl|CDD|183690 PRK12698, flgH, flagellar basal body L-ring protein; Reviewed. Length = 224 Score = 86.3 bits (214), Expect = 6e-18 Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 62 SLWRDSHAA-LFKDSRALNVGDILTVDIRIDDQA--VFDNQTGRSRNNSLHRKLSGGFSL 118 S+++DS A L+ D +A VGDI+TV ++ QA +N+ + + SL +GG ++ Sbjct: 47 SIFQDSQANSLYSDIKAHKVGDIITVVLKESTQAKKSANNEIKKGSDLSLDPIYAGGGNV 106 Query: 119 FGQQTPQMNGN---LNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEV 175 + G L Y + + ++ L+ I+A V +L NGNL+I G + + Sbjct: 107 ------SIGGVPLDLGYKDSMNTKRESDADQSNSLSGSISANVMQVLPNGNLVIRGEKWI 160 Query: 176 RVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTE 221 +N+ + +TGIVR QD+ N++ ++A ARI Y G G + Sbjct: 161 SINNGDEFIRLTGIVRSQDITPDNTIDSTRVANARIQYSGTGTFAD 206 >gnl|CDD|183691 PRK12701, flgH, flagellar basal body L-ring protein; Reviewed. Length = 230 Score = 81.0 bits (199), Expect = 3e-16 Identities = 68/223 (30%), Positives = 107/223 (47%), Gaps = 19/223 (8%) Query: 1 MYRYSFIVLCYSS-LLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKK 59 M R + V C ++ LLFGC + G D + P + + K Sbjct: 1 MNRLNIAVSCLATALLFGCEALHPPAPG-----------DNPDYAPTYPVTPDPKELRKV 49 Query: 60 SYSLWRDSHA-ALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSL 118 S +++ A LF+ RA + GDILTV + I+ N T R N + + F Sbjct: 50 SGAIYSSETALPLFETPRARHPGDILTVYL-IEKTDAQKNATTTQRKNDTTKITNKLF-- 106 Query: 119 FGQQTPQMNG---NLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEV 175 G+ +G + + D +G+G + KL I+ V +L NGN+++ G + V Sbjct: 107 LGRPISLGSGYSMDFDLDNQRQFNGEGRSIQNNKLAGSISVTVAKVLANGNMVVQGEKWV 166 Query: 176 RVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGR 218 R+N + ++GIVRPQD+ A N+++ D+IA ARISYGG G+ Sbjct: 167 RINQGNEFVRLSGIVRPQDIKADNTITSDRIANARISYGGTGQ 209 >gnl|CDD|183507 PRK12407, flgH, flagellar basal body L-ring protein; Reviewed. Length = 221 Score = 78.4 bits (193), Expect = 1e-15 Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 13/152 (8%) Query: 70 ALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNG- 128 +L +D RA VGDILTV + Q+ +T + N + G + G++ ++ G Sbjct: 57 SLLQDRRAYRVGDILTVILDESTQSSKQAKTNFGKKNDVS---LGVPEVLGKKLDKLGGS 113 Query: 129 ---NLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLN 185 ++DG S+ + + R I V +L NG L+I G + + +N + Sbjct: 114 ISGKRDFDGSATSAQQNML-RGS-----ITVAVHQVLPNGVLVIRGEKWLTLNQGDEYMR 167 Query: 186 VTGIVRPQDVDAHNSVSYDKIAEARISYGGKG 217 VTG+VR D+ NSVS +IA ARISY G+G Sbjct: 168 VTGLVRADDIARDNSVSSQRIANARISYAGRG 199 >gnl|CDD|139164 PRK12700, flgH, flagellar basal body L-ring protein; Reviewed. Length = 230 Score = 78.2 bits (192), Expect = 2e-15 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 15/159 (9%) Query: 71 LFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQ----- 125 LF+D R NVGDI+T+ V + +T ++ + + G +L P+ Sbjct: 64 LFEDRRPRNVGDIVTI--------VLEEKTNAAKGVATNTSRDGSATLGVAAAPRFMDGV 115 Query: 126 MNGNLNYD--GGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRS 183 +N L+ D GG ++G G S I V +L NGNL I+G +++ +N Sbjct: 116 INDKLDTDISGGNTANGTGKSSANNTFTGTITTTVIGVLPNGNLQIAGEKQIAINRGSEY 175 Query: 184 LNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTEL 222 + +G+V P+ + N+VS ++A+ARI Y KG E+ Sbjct: 176 VRFSGVVDPRSITGSNTVSSTRVADARIEYRSKGVMDEV 214 >gnl|CDD|183689 PRK12697, flgH, flagellar basal body L-ring protein; Reviewed. Length = 226 Score = 77.2 bits (190), Expect = 3e-15 Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 71 LFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKL-SGGF--SLFGQQTPQMN 127 LF+D R NVGDILT+ I + A + +R + + + GF LF + Sbjct: 62 LFEDQRPRNVGDILTIVIAENINATKSSGANTNRQGNTDFDVPTAGFLGGLFNK------ 115 Query: 128 GNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVT 187 NL+ G + G S A N I VT +L NGNL++SG +++ +N + + Sbjct: 116 ANLSAQGANKFAATGGASAANTFNGTITVTVTNVLPNGNLVVSGEKQMLINQGNEFVRFS 175 Query: 188 GIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTE 221 G+V P + NSV ++A+ARI Y KG E Sbjct: 176 GVVNPNTISGANSVYSTQVADARIEYSAKGYINE 209 >gnl|CDD|105864 PRK12699, flgH, flagellar basal body L-ring protein; Reviewed. Length = 246 Score = 61.1 bits (148), Expect = 2e-10 Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 20/166 (12%) Query: 65 RDSHAALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSL-----F 119 R + LF+D RA +GD + V + + +T S+ + + + +G SL Sbjct: 75 RGRYHPLFEDRRARQIGDTIIV--------LLNEKTNASKKSGSNAQRNGDISLSVPSFL 126 Query: 120 GQQTPQMNGNLNYDGGGASS----GKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEV 175 G + +L D +SS GKG S I V IL NGNL++SG +++ Sbjct: 127 GLPFKSIFQDL--DLEASSSNKFDGKGESSSNNNFTGTITVTVVDILPNGNLLVSGEKQI 184 Query: 176 RVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTE 221 +N + ++G++ P +V +N+VS ++A+ARI Y G G E Sbjct: 185 GINQGHEFIRLSGVINPINV-INNTVSSIQVADARIEYRGNGYLDE 229 >gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase; Provisional. Length = 512 Score = 33.7 bits (78), Expect = 0.039 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 37/117 (31%) Query: 135 GGASSGKGSISR--AEKLNLL-----------------------IAAIVTAILENGNLII 169 G A +GK +++R A+KL LL + +L + + + Sbjct: 291 GPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIEL 350 Query: 170 S----GSQEVRVN-----DEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKG 217 Q V +N + IRS VT V + A +V + + + G KG Sbjct: 351 KPSSGSPQRVWINGEDVTEAIRSPEVTSSVSA--IAAQPAVRQALVKQQQ-RIGEKG 404 >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional. Length = 1452 Score = 28.3 bits (63), Expect = 1.9 Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 4/41 (9%) Query: 4 YSFIVLCYSS----LLFGCHSSISEITGIPQMSPMGSSLDE 40 +SF+ L + L + +SSI + + + ++ Sbjct: 367 FSFMSLVLCAAVWLLRWAQNSSIHPLLSERPFLTVEALKEK 407 >gnl|CDD|172418 PRK13898, PRK13898, type IV secretion system ATPase VirB4; Provisional. Length = 800 Score = 27.8 bits (62), Expect = 2.8 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%) Query: 42 NRMPFLGIDFKNSDSTKKSYSLWRD--SHAALF 72 N + FLGID ++ ++W SHAA+F Sbjct: 565 NLVAFLGID--GPNTLAGRIAMWHGKGSHAAIF 595 >gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. Length = 581 Score = 27.1 bits (60), Expect = 3.9 Identities = 14/41 (34%), Positives = 20/41 (48%) Query: 172 SQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARIS 212 S EV+V D +R L + VR + + A N A RI+ Sbjct: 200 SGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIA 240 >gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional. Length = 443 Score = 26.9 bits (60), Expect = 4.6 Identities = 9/25 (36%), Positives = 11/25 (44%) Query: 68 HAALFKDSRALNVGDILTVDIRIDD 92 AL KD R + D+RID Sbjct: 2 RDALLKDGRVYYNNSLQPRDVRIDG 26 >gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional. Length = 225 Score = 26.6 bits (60), Expect = 5.7 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%) Query: 135 GGASSGKGSISR--AEKLNL 152 G A SGKG++++ A+KL Sbjct: 11 GPAGSGKGTVAKILAKKLGF 30 >gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional. Length = 248 Score = 26.7 bits (59), Expect = 5.8 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 8/72 (11%) Query: 143 SISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAH-NSV 201 ++SR +KLN L LE N IS +++ + +IR + VTG R V A + Sbjct: 14 TMSRPDKLNALN-------LEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEF 66 Query: 202 SYDKIAEARISY 213 + D + R ++ Sbjct: 67 APDFAIDLRETF 78 >gnl|CDD|181909 PRK09496, trkA, potassium transporter peripheral membrane component; Reviewed. Length = 453 Score = 26.6 bits (60), Expect = 5.9 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 143 SISRAEKLNLLIAAIVTAILENGNLII-SGSQEVRVNDEI 181 +S + I V AI G LII G + DE+ Sbjct: 169 PLSDLREHFPDIDVRVVAIFRGGRLIIPRGDTVIEAGDEV 208 >gnl|CDD|182032 PRK09695, PRK09695, glycolate transporter; Provisional. Length = 560 Score = 26.6 bits (58), Expect = 6.0 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Query: 165 GNLIISGSQEVRVNDEIR-SLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELL 223 G+L + +Q++ V+D + + N +G V + +S IA A + G GR +EL Sbjct: 476 GSLQSTTAQQINVSDTLLVAANTSGGVTGK------MISPQSIAVACAATGMVGRESELF 529 Query: 224 RPPIGHQLI 232 R + H LI Sbjct: 530 RYTVKHSLI 538 >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional. Length = 257 Score = 26.2 bits (57), Expect = 7.4 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 25/142 (17%) Query: 77 ALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYDGGG 136 A +V +I + + I+D+A+ + T + NN S+FG P Sbjct: 7 AEDVFNISRLYLYINDKAILKDITIKIPNN----------SIFGIMGP------------ 44 Query: 137 ASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVD 196 SG G + + LN LI + I +G ++ G ++ D I+ G+V Q Sbjct: 45 --SGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI-DAIKLRKEVGMVFQQPNP 101 Query: 197 AHNSVSYDKIAEARISYGGKGR 218 + YD IA S+G K + Sbjct: 102 FPHLSIYDNIAYPLKSHGIKEK 123 >gnl|CDD|162353 TIGR01426, MGT, glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. Length = 392 Score = 26.2 bits (58), Expect = 7.5 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Query: 192 PQDVDAHNSVSYDKI---AEARISYGGKGRTTELL 223 P +V+ V +I A+A I++GG T E L Sbjct: 274 PPNVEVRQWVPQLEILKKADAFITHGGMNSTMEAL 308 >gnl|CDD|185135 PRK15213, PRK15213, fimbrial outer membrane usher protein PefC; Provisional. Length = 797 Score = 25.9 bits (57), Expect = 9.8 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Query: 100 TGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYDGGGASSGKGSIS 145 T R R+ L+ + Q NG L++ GGG +SG S+S Sbjct: 586 TNRDRDGGRSSSLNASYGF---DRAQTNGMLSHQGGGNTSGSVSVS 628 >gnl|CDD|179920 PRK05054, PRK05054, exoribonuclease II; Provisional. Length = 644 Score = 26.0 bits (58), Expect = 10.0 Identities = 7/12 (58%), Positives = 8/12 (66%) Query: 64 WRDSHAALFKDS 75 WR HA +FKD Sbjct: 351 WRKQHALVFKDR 362 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.316 0.134 0.381 Gapped Lambda K H 0.267 0.0696 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,823,968 Number of extensions: 237582 Number of successful extensions: 460 Number of sequences better than 10.0: 1 Number of HSP's gapped: 446 Number of HSP's successfully gapped: 26 Length of query: 238 Length of database: 5,994,473 Length adjustment: 91 Effective length of query: 147 Effective length of database: 4,028,145 Effective search space: 592137315 Effective search space used: 592137315 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 56 (25.4 bits)