RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring
protein [Candidatus Liberibacter asiaticus str. psy62]
         (238 letters)



>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; HET: PLP; 1.86A {Thermus thermophilus HB8}
           PDB: 2yri_A* (A:1-17,A:252-353)
          Length = 119

 Score = 27.5 bits (61), Expect = 1.5
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 179 DEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARIS-YGGKGRT-TELLRPPIGH 229
                  V  +  P+ VDA        +    ++  GG G T  ++LR  +G 
Sbjct: 47  KASPLPTVLVVRPPEGVDA--DRLVRALYAEGVAVAGGIGPTRGQVLR--LGL 95


>1vio_A Ribosomal small subunit pseudouridine synthase A; structural
           genomics, lyase; 1.59A {Haemophilus influenzae} (A:1-57)
          Length = 57

 Score = 25.7 bits (57), Expect = 6.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 137 ASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIR 182
           A +   + S+A K    I    +A+  NG ++ SGS ++   DEI 
Sbjct: 10  AENVGLTRSQATKA---IRQ--SAVKINGEIVKSGSVQISQEDEIY 50


>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA,
           lyase; 2.00A {Escherichia coli} (A:1-58)
          Length = 58

 Score = 25.3 bits (56), Expect = 7.2
 Identities = 5/46 (10%), Positives = 17/46 (36%), Gaps = 5/46 (10%)

Query: 137 ASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIR 182
           A     S + A +    I      +  +G ++ + + ++    ++ 
Sbjct: 11  AQQLGVSRAIAGRE---IRG--NRVTVDGEIVRNAAFKLLPEHDVA 51


>2it1_A 362AA long hypothetical maltose/maltodextrin transport
           ATP-binding protein; structural genomics, NPPSFA; 1.94A
           {Pyrococcus horikoshii} (A:232-362)
          Length = 131

 Score = 25.4 bits (55), Expect = 7.4
 Identities = 5/33 (15%), Positives = 16/33 (48%)

Query: 70  ALFKDSRALNVGDILTVDIRIDDQAVFDNQTGR 102
               +    + G+ +T+ ++ +   +FD +T +
Sbjct: 92  VFAPEGEHFSFGEKVTIKVKEELLVLFDKKTEK 124


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,712,314
Number of extensions: 71168
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 9
Length of query: 238
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 152
Effective length of database: 2,048,819
Effective search space: 311420488
Effective search space used: 311420488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)