RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring
protein [Candidatus Liberibacter asiaticus str. psy62]
         (238 letters)



>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
           1313]}
          Length = 223

 Score = 26.9 bits (58), Expect = 1.4
 Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 2/20 (10%)

Query: 135 GGASSGKGSISR--AEKLNL 152
           G ASSGK ++++  A+    
Sbjct: 10  GPASSGKSTVAKIIAKDFGF 29


>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
          Length = 225

 Score = 26.9 bits (58), Expect = 1.5
 Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 2/20 (10%)

Query: 135 GGASSGKGSISR--AEKLNL 152
           G + +GKG++ +  AE L  
Sbjct: 10  GPSGAGKGTLCKAMAEALQW 29


>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
           [TaxId: 274]}
          Length = 1119

 Score = 26.7 bits (58), Expect = 2.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 162 LENGNLIISGSQEVRVNDEIRSLNV 186
            E+G+ II+G+  V V+   RS  V
Sbjct: 122 TEDGSFIINGADRVIVSQIHRSPGV 146


>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal
           domain {Haemophilus influenzae [TaxId: 727]}
          Length = 58

 Score = 25.4 bits (56), Expect = 4.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 137 ASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIR 182
           A +   + S+A K    I    +A+  NG ++ SGS ++   DEI 
Sbjct: 9   AENVGLTRSQATKA---IRQ--SAVKINGEIVKSGSVQISQEDEIY 49


>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans
           [TaxId: 63186]}
          Length = 295

 Score = 24.9 bits (53), Expect = 5.9
 Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 10/58 (17%)

Query: 160 AILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKG 217
           + + +G L +  +++            +  +    + +   V Y    EAR       
Sbjct: 64  SYVADGELKMWATRK----------PGSDKINMGCITSKTRVVYPVYIEARAKVMNST 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 840,443
Number of extensions: 36520
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 7
Length of query: 238
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 155
Effective length of database: 1,268,006
Effective search space: 196540930
Effective search space used: 196540930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)