HHsearch alignment for GI: 254780375 and conserved domain: COG1536

>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion].

Probab=92.72  E-value=0.76  Score=24.75  Aligned_cols=63  Identities=21%  Similarity=0.303  Sum_probs=49.4

Q ss_pred             HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCH
Q ss_conf             999995199899999996379899999997299899999996299999999999995271121
Q gi|254780375|r  107 ILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANMLKFK  169 (175)
Q Consensus       107 lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~~~~  169 (175)
T Consensus       113 ~~~~l~~~~p~~l~~~i~~EhPQtia~iLs~L~~~~aa~vL~~l~~e~r~~v~~Ria~l~~v~  175 (339)
T COG1536         113 PFDLLRKLDPSQLADLIKNEHPQTIALILSYLPPDQAAEILSTLPEELRADVVKRIATLEGVS  175 (339)
T ss_pred             HHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf             777750178999999987125188999998158777899998599989999999987112699