HHsearch alignment for GI: 254780375 and conserved domain: PRK05686
>PRK05686 fliG flagellar motor switch protein G; Validated.
Probab=97.20 E-value=0.0027 Score=40.25 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=60.5
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHH
Q ss_conf 9999999951998999999963798999999972998999999962999999999999952711214
Q gi|254780375|r 104 NKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANMLKFKK 170 (175)
Q Consensus 104 ~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~~~~~ 170 (175)
T Consensus 108 ~~~~~~~L~~~dp~~La~~L~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~~~eVi~RiA~l~~v~p 174 (337)
T PRK05686 108 QTSGFDFLRKMDPQQLANFIRNEHPQTIALILSYLDPDQAAEILSLLPEELRADVMMRIATLEGVQP 174 (337)
T ss_pred CCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH
T ss_conf 5876899865999999999872485899999980999999999986999999999999867789999