HHsearch alignment for GI: 254780375 and conserved domain: PRK05686

>PRK05686 fliG flagellar motor switch protein G; Validated.
Probab=97.20  E-value=0.0027  Score=40.25  Aligned_cols=67  Identities=21%  Similarity=0.256  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHH
Q ss_conf             9999999951998999999963798999999972998999999962999999999999952711214
Q gi|254780375|r  104 NKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANMLKFKK  170 (175)
Q Consensus       104 ~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~~~~~  170 (175)
T Consensus       108 ~~~~~~~L~~~dp~~La~~L~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~~~eVi~RiA~l~~v~p  174 (337)
T PRK05686        108 QTSGFDFLRKMDPQQLANFIRNEHPQTIALILSYLDPDQAAEILSLLPEELRADVMMRIATLEGVQP  174 (337)
T ss_pred             CCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH
T ss_conf             5876899865999999999872485899999980999999999986999999999999867789999