RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780375|ref|YP_003064788.1| hypothetical protein
CLIBASIA_01300 [Candidatus Liberibacter asiaticus str. psy62]
         (175 letters)



>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar
           motion, structural protein; 2.80A {Thermotoga maritima}
           (X:1-65)
          Length = 65

 Score = 31.9 bits (73), Expect = 0.056
 Identities = 9/62 (14%), Positives = 21/62 (33%)

Query: 104 NKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA 163
                   +  D       L+   P   + +L  L P  ++ I+  +  +  T +   +A
Sbjct: 1   QVKPFSFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIA 60

Query: 164 NM 165
            +
Sbjct: 61  LL 62


>1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM
           barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca}
           (A:17-136,A:217-337)
          Length = 241

 Score = 28.2 bits (63), Expect = 0.59
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 78  RVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMR 137
            V  L+         F   D FI  Y  N+    + M  DS  L     DP++    ++ 
Sbjct: 31  AVTELDGKPVSD---FDLIDHFIARYGINLNRAEEVMAMDSVKLANMLCDPNVKRSEIVP 87

Query: 138 L----SPRQSSLIMSKMNPKSATM 157
           L    +P +   ++S MN     M
Sbjct: 88  LTTAMTPAKIVEVVSHMNVVEMMM 111


>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2,
           protein structure initiative, nysgxrc; 2.16A
           {Enterococcus faecalis V583} (A:59-140)
          Length = 82

 Score = 28.1 bits (63), Expect = 0.68
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 109 DIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMI 158
           D   +     AA  L +   D +  +L  L   Q +  +S ++ + A  I
Sbjct: 21  DYLAEXRPSYAADXLAEXYTDNAVDLLNXLDKSQKAKYLSLLSSEEAGEI 70


>1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A
           {Rice dwarf virus}
           (A:1-141,A:230-245,A:658-772,A:963-971)
          Length = 281

 Score = 26.9 bits (59), Expect = 1.4
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 14/74 (18%)

Query: 98  SFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATM 157
           +FI+SY K+I D +  ++ DSA       +P ++ H +         +I S +N   A M
Sbjct: 92  TFIVSYAKDIYDKFMCIEHDSA------YEPSLTMHRV--------RVIYSMLNDYCAKM 137

Query: 158 ITNVVANMLKFKKL 171
           I+ V  + L    L
Sbjct: 138 ISEVALHALANDLL 151


>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein
           structure initiative, MCSG, structural genomics; HET:
           MSE; 2.01A {Streptococcus pneumoniae TIGR4} (A:)
          Length = 216

 Score = 26.7 bits (59), Expect = 1.8
 Identities = 8/36 (22%), Positives = 14/36 (38%)

Query: 100 IMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHIL 135
               N  IL+  K++  +     L+ ID D     +
Sbjct: 153 PEQRNARILNEVKQITHNDLXTILKIIDQDFLKDTI 188


>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport;
           2.94A {Thermus thermophilus HB8} PDB: 2yvx_A (A:1-158)
          Length = 158

 Score = 26.5 bits (58), Expect = 1.8
 Identities = 7/58 (12%), Positives = 22/58 (37%)

Query: 102 SYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMIT 159
               ++ +  ++ D+ +    LE+I P     +   L      ++++ +    A  + 
Sbjct: 27  KLAVSLQEALQEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEVL 84


>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A
           {Bos taurus} (A:247-319)
          Length = 73

 Score = 25.5 bits (56), Expect = 4.2
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 98  SFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHIL-MRLSPR-QSSLIMSKMNPKSA 155
           SF + + ++ ++I  K+  D    ++E  + +   H L + +  +  SSLI SK +P   
Sbjct: 12  SFTVLHEQSHVEI--KVFIDVKNGRIEVCNIEAPDHWLPLEICDQLNSSLIGSKFSPIET 69

Query: 156 TMIT 159
           T++T
Sbjct: 70  TVLT 73


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 25.6 bits (56), Expect = 4.4
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 8/53 (15%)

Query: 83  ENHKKEYNLWFQKYDSFIM--SYNKNILDIYKKMDSDSAALQLEQIDPDISSH 133
           E+H         KY S  +   Y K  L   +    D    +LE +  +    
Sbjct: 12  EHHSSV------KYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEI 58


>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial
           target, structure-based design, transferase; 2.00A
           {Escherichia coli} (A:1-6,A:92-213)
          Length = 128

 Score = 24.6 bits (53), Expect = 7.2
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 9   YYKKRDMLSQLLFLLFFFLQGFANQSYGDPTLVDREIQQYCTNVIDSVRERDYLSQKKVL 68
           ++K +D  SQL+  + +  +GF        T+ +    ++C ++I    ER  L +KK+ 
Sbjct: 37  WFKVQD--SQLMKYILY--KGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLG 92

Query: 69  EDLQKDIEQRVILLENH 85
             +  +I+ +   + + 
Sbjct: 93  ARVNIEIDPQTQAVVDT 109


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.322    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,246,887
Number of extensions: 52884
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 31
Length of query: 175
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 92
Effective length of database: 2,150,234
Effective search space: 197821528
Effective search space used: 197821528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)