RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter asiaticus str. psy62] (175 letters) >1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} (X:1-65) Length = 65 Score = 31.9 bits (73), Expect = 0.056 Identities = 9/62 (14%), Positives = 21/62 (33%) Query: 104 NKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA 163 + D L+ P + +L L P ++ I+ + + T + +A Sbjct: 1 QVKPFSFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIA 60 Query: 164 NM 165 + Sbjct: 61 LL 62 >1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} (A:17-136,A:217-337) Length = 241 Score = 28.2 bits (63), Expect = 0.59 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 7/84 (8%) Query: 78 RVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMR 137 V L+ F D FI Y N+ + M DS L DP++ ++ Sbjct: 31 AVTELDGKPVSD---FDLIDHFIARYGINLNRAEEVMAMDSVKLANMLCDPNVKRSEIVP 87 Query: 138 L----SPRQSSLIMSKMNPKSATM 157 L +P + ++S MN M Sbjct: 88 LTTAMTPAKIVEVVSHMNVVEMMM 111 >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} (A:59-140) Length = 82 Score = 28.1 bits (63), Expect = 0.68 Identities = 11/50 (22%), Positives = 20/50 (40%) Query: 109 DIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMI 158 D + AA L + D + +L L Q + +S ++ + A I Sbjct: 21 DYLAEXRPSYAADXLAEXYTDNAVDLLNXLDKSQKAKYLSLLSSEEAGEI 70 >1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A {Rice dwarf virus} (A:1-141,A:230-245,A:658-772,A:963-971) Length = 281 Score = 26.9 bits (59), Expect = 1.4 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 14/74 (18%) Query: 98 SFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATM 157 +FI+SY K+I D + ++ DSA +P ++ H + +I S +N A M Sbjct: 92 TFIVSYAKDIYDKFMCIEHDSA------YEPSLTMHRV--------RVIYSMLNDYCAKM 137 Query: 158 ITNVVANMLKFKKL 171 I+ V + L L Sbjct: 138 ISEVALHALANDLL 151 >2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein structure initiative, MCSG, structural genomics; HET: MSE; 2.01A {Streptococcus pneumoniae TIGR4} (A:) Length = 216 Score = 26.7 bits (59), Expect = 1.8 Identities = 8/36 (22%), Positives = 14/36 (38%) Query: 100 IMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHIL 135 N IL+ K++ + L+ ID D + Sbjct: 153 PEQRNARILNEVKQITHNDLXTILKIIDQDFLKDTI 188 >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A (A:1-158) Length = 158 Score = 26.5 bits (58), Expect = 1.8 Identities = 7/58 (12%), Positives = 22/58 (37%) Query: 102 SYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMIT 159 ++ + ++ D+ + LE+I P + L ++++ + A + Sbjct: 27 KLAVSLQEALQEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEVL 84 >2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} (A:247-319) Length = 73 Score = 25.5 bits (56), Expect = 4.2 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Query: 98 SFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHIL-MRLSPR-QSSLIMSKMNPKSA 155 SF + + ++ ++I K+ D ++E + + H L + + + SSLI SK +P Sbjct: 12 SFTVLHEQSHVEI--KVFIDVKNGRIEVCNIEAPDHWLPLEICDQLNSSLIGSKFSPIET 69 Query: 156 TMIT 159 T++T Sbjct: 70 TVLT 73 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 25.6 bits (56), Expect = 4.4 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 8/53 (15%) Query: 83 ENHKKEYNLWFQKYDSFIM--SYNKNILDIYKKMDSDSAALQLEQIDPDISSH 133 E+H KY S + Y K L + D +LE + + Sbjct: 12 EHHSSV------KYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEI 58 >1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} (A:1-6,A:92-213) Length = 128 Score = 24.6 bits (53), Expect = 7.2 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Query: 9 YYKKRDMLSQLLFLLFFFLQGFANQSYGDPTLVDREIQQYCTNVIDSVRERDYLSQKKVL 68 ++K +D SQL+ + + +GF T+ + ++C ++I ER L +KK+ Sbjct: 37 WFKVQD--SQLMKYILY--KGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLG 92 Query: 69 EDLQKDIEQRVILLENH 85 + +I+ + + + Sbjct: 93 ARVNIEIDPQTQAVVDT 109 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.136 0.379 Gapped Lambda K H 0.267 0.0567 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,246,887 Number of extensions: 52884 Number of successful extensions: 189 Number of sequences better than 10.0: 1 Number of HSP's gapped: 185 Number of HSP's successfully gapped: 31 Length of query: 175 Length of database: 4,956,049 Length adjustment: 83 Effective length of query: 92 Effective length of database: 2,150,234 Effective search space: 197821528 Effective search space used: 197821528 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.8 bits)