RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter asiaticus str. psy62] (175 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 36.8 bits (85), Expect = 0.002 Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 48/167 (28%) Query: 2 ILLPIIYYYKKRDMLSQLL--FL--LFFFLQGFANQSYGDPT----LVDREIQQYCTNVI 53 +L+P ++ SQL F L +GFA +PT LV + + Y V Sbjct: 20 LLVPTASFFI----ASQLQEQFNKILPEPTEGFAADD--EPTTPAELVGKFLG-Y---VS 69 Query: 54 DSVRERDYLSQKKVLEDLQKDIEQRVILLEN--HKKEYNLWFQKYDSFIMSYN------- 104 V +VL + E L N H + Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENC-YLEGNDIH------------ALAAKLLQENDTTL 116 Query: 105 ---KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMS 148 K ++ Y A + ++ S+ L R ++ +++ Sbjct: 117 VKTKELIKNYIT-----ARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158 Score = 28.4 bits (63), Expect = 1.0 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 22/114 (19%) Query: 81 LLENHKKEYNLWFQKYDSFIMSYNKNILDIY----------------KKMDSDSAALQLE 124 L + K ++W + + F +Y +ILDI K++ + +A+ E Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694 Query: 125 QI-DPDISSH-ILMRLSPRQSSLIM-SKMNPKSATMITNVVANMLK---FKKLK 172 I D + + I ++ +S S+ SAT T +++ F+ LK Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748 >3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, guanine nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 283 Score = 30.7 bits (69), Expect = 0.17 Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 10/125 (8%) Query: 44 EIQQYCTNVIDSVRERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSY 103 E+ + + K L D +I R++ L N + + S +S Sbjct: 68 EMISQLHRTCKTAGD---FETK--LSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLSQ 122 Query: 104 NKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA 163 N++ + +S ++ L S ++KM + ++ Sbjct: 123 NESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKIL----- 177 Query: 164 NMLKF 168 ++L+F Sbjct: 178 DILQF 182 >1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP: c.1.19.3 PDB: 1dio_A* 1egm_A* 1egv_A* 1iwb_A* 1uc4_A* 1uc5_A* 1iwp_A* 1mmf_A* Length = 554 Score = 30.1 bits (68), Expect = 0.26 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 7/84 (8%) Query: 78 RVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMR 137 V L+ F D FI Y N+ + M DS L DP++ ++ Sbjct: 47 AVTELDGKPVSD---FDLIDHFIARYGINLNRAEEVMAMDSVKLANMLCDPNVKRSEIVP 103 Query: 138 L----SPRQSSLIMSKMNPKSATM 157 L +P + ++S MN M Sbjct: 104 LTTAMTPAKIVEVVSHMNVVEMMM 127 >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A Length = 473 Score = 28.6 bits (63), Expect = 0.88 Identities = 8/51 (15%), Positives = 18/51 (35%) Query: 108 LDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMI 158 + + AA L + P+ + L L P + I+ +++ Sbjct: 69 YVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADA 119 >1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} SCOP: a.118.14.1 Length = 232 Score = 27.0 bits (59), Expect = 2.2 Identities = 9/57 (15%), Positives = 21/57 (36%) Query: 109 DIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANM 165 + D L+ P + +L L P ++ I+ + + T + +A + Sbjct: 6 SFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALL 62 >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 Score = 27.1 bits (59), Expect = 2.3 Identities = 10/67 (14%), Positives = 26/67 (38%) Query: 61 YLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSDSAA 120 + S++ + + QK + + + K E +LW + + I + + S+ A Sbjct: 30 WTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQA 89 Query: 121 LQLEQID 127 ++ Sbjct: 90 NLSLFLE 96 >3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus} Length = 329 Score = 26.9 bits (59), Expect = 2.4 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 15/101 (14%) Query: 51 NVIDSVRERDYLSQ-KKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILD 109 N +D L + L++ I +++ E+ +++I++ Sbjct: 208 NTLDKETRELILQSIGQEDPLLEERIREKMFTFED--------------IRKLSDRDIIE 253 Query: 110 IYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKM 150 I K +D ++ + L DI L +S R + L + M Sbjct: 254 ILKVVDKNTLMIALLGAPEDIKQKFLSNMSKRAAKLFLEDM 294 >1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A {Rice dwarf virus} SCOP: e.28.1.2 Length = 1019 Score = 26.5 bits (58), Expect = 3.5 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 14/64 (21%) Query: 98 SFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATM 157 +FI+SY K+I D + ++ DSA +P ++ H + +I S +N A M Sbjct: 92 TFIVSYAKDIYDKFMCIEHDSA------YEPSLTMHRV--------RVIYSMLNDYCAKM 137 Query: 158 ITNV 161 I+ V Sbjct: 138 ISEV 141 >2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P Length = 678 Score = 26.2 bits (57), Expect = 3.7 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 64 QKKVLEDLQKDIEQRVILL-ENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSDSAALQ 122 ++ LE K ++ + L E+ + E ++ + +NKN+ + + A L Sbjct: 139 ARRYLEKSIKMGKRNGLHLSEHIRNEIKSMKKRMSELCIDFNKNLNEDDTSLVFSKAELG 198 >3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411 Score = 26.4 bits (57), Expect = 4.1 Identities = 13/94 (13%), Positives = 31/94 (32%) Query: 58 ERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSD 117 + + LED+ +E + ++ K L + +S + +KM + Sbjct: 33 QTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEE 92 Query: 118 SAALQLEQIDPDISSHILMRLSPRQSSLIMSKMN 151 + + D S L + + I++ Sbjct: 93 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKE 126 >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural genomics, PSI-2; 2.41A {Shewanella oneidensis mr-1} Length = 205 Score = 26.2 bits (57), Expect = 4.6 Identities = 6/45 (13%), Positives = 14/45 (31%) Query: 114 MDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMI 158 M + L Q+ P+ L + +++M + Sbjct: 1 MPDNEVDLLFAQLSPEDLIEWSDYLPESFTDRALAQMGERQRQRF 45 >2q97_T Toxofilin, actin, alpha skeletal muscle; structural protein, structural protein/cell invasion complex; HET: HIC ATP; 2.50A {Toxoplasma gondii} Length = 129 Score = 25.8 bits (56), Expect = 5.0 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 5/33 (15%) Query: 64 QKKVLEDLQKDI-----EQRVILLENHKKEYNL 91 Q+K E +Q+D+ E + +L+EN +KE L Sbjct: 67 QQKAYEQVQRDLSQLSPETKALLIENQRKEKTL 99 >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Length = 480 Score = 25.4 bits (55), Expect = 7.5 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%) Query: 53 IDSVRERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMS 102 + S+ ER K E+L++DI +LEN +E + +Y + + S Sbjct: 324 VQSLSER-----KYSDEELRQDISNLKEILENEYQELTSF-DEYVAELDS 367 >2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P Length = 674 Score = 25.5 bits (55), Expect = 7.6 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 1/47 (2%) Query: 64 QKKVLEDLQKDIEQRVILL-ENHKKEYNLWFQKYDSFIMSYNKNILD 109 + LE L K + + L ++ +K + +NKN+ + Sbjct: 123 AARYLERLIKLGRRNGLHLPRETQENIKRIKKKLSLLCIDFNKNLNE 169 >1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1 Length = 381 Score = 25.0 bits (54), Expect = 9.4 Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 24/133 (18%) Query: 11 KKRDMLSQLLFLLFFFLQGFAN-------QSYGDPT------LVDREIQQYCTNVIDSVR 57 +R +++LL L +F+ G N + P + ++ I + ++ + Sbjct: 245 NERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPF 304 Query: 58 ERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSD 117 LE+L + L ++ Y KN I K+ Sbjct: 305 TDCGDGPMLRLEELGDQRH------APFRHICRLCYRVLRHSQQDYRKNQEYIAKQFG-- 356 Query: 118 SAALQLEQIDPDI 130 +QI D+ Sbjct: 357 ---FMQKQIGYDV 366 >1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 Length = 209 Score = 24.9 bits (54), Expect = 9.6 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Query: 60 DYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMS 102 D+L+ + V ++ + LE+ +EY + + SF+ S Sbjct: 168 DFLADRGVDNTFADELVELSTALEH--QEYITFLEDLKSFVKS 208 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.136 0.379 Gapped Lambda K H 0.267 0.0460 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,450,773 Number of extensions: 64390 Number of successful extensions: 249 Number of sequences better than 10.0: 1 Number of HSP's gapped: 245 Number of HSP's successfully gapped: 38 Length of query: 175 Length of database: 5,693,230 Length adjustment: 86 Effective length of query: 89 Effective length of database: 3,608,246 Effective search space: 321133894 Effective search space used: 321133894 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.9 bits)