RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780375|ref|YP_003064788.1| hypothetical protein
CLIBASIA_01300 [Candidatus Liberibacter asiaticus str. psy62]
(175 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 36.8 bits (85), Expect = 0.002
Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 48/167 (28%)
Query: 2 ILLPIIYYYKKRDMLSQLL--FL--LFFFLQGFANQSYGDPT----LVDREIQQYCTNVI 53
+L+P ++ SQL F L +GFA +PT LV + + Y V
Sbjct: 20 LLVPTASFFI----ASQLQEQFNKILPEPTEGFAADD--EPTTPAELVGKFLG-Y---VS 69
Query: 54 DSVRERDYLSQKKVLEDLQKDIEQRVILLEN--HKKEYNLWFQKYDSFIMSYN------- 104
V +VL + E L N H +
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENC-YLEGNDIH------------ALAAKLLQENDTTL 116
Query: 105 ---KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMS 148
K ++ Y A + ++ S+ L R ++ +++
Sbjct: 117 VKTKELIKNYIT-----ARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Score = 28.4 bits (63), Expect = 1.0
Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 22/114 (19%)
Query: 81 LLENHKKEYNLWFQKYDSFIMSYNKNILDIY----------------KKMDSDSAALQLE 124
L + K ++W + + F +Y +ILDI K++ + +A+ E
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 125 QI-DPDISSH-ILMRLSPRQSSLIM-SKMNPKSATMITNVVANMLK---FKKLK 172
I D + + I ++ +S S+ SAT T +++ F+ LK
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, guanine nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 283
Score = 30.7 bits (69), Expect = 0.17
Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 10/125 (8%)
Query: 44 EIQQYCTNVIDSVRERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSY 103
E+ + + K L D +I R++ L N + + S +S
Sbjct: 68 EMISQLHRTCKTAGD---FETK--LSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLSQ 122
Query: 104 NKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA 163
N++ + +S ++ L S ++KM + ++
Sbjct: 123 NESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKIL----- 177
Query: 164 NMLKF 168
++L+F
Sbjct: 178 DILQF 182
>1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel,
lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP:
c.1.19.3 PDB: 1dio_A* 1egm_A* 1egv_A* 1iwb_A* 1uc4_A*
1uc5_A* 1iwp_A* 1mmf_A*
Length = 554
Score = 30.1 bits (68), Expect = 0.26
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 78 RVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMR 137
V L+ F D FI Y N+ + M DS L DP++ ++
Sbjct: 47 AVTELDGKPVSD---FDLIDHFIARYGINLNRAEEVMAMDSVKLANMLCDPNVKRSEIVP 103
Query: 138 L----SPRQSSLIMSKMNPKSATM 157
L +P + ++S MN M
Sbjct: 104 LTTAMTPAKIVEVVSHMNVVEMMM 127
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus HB8} PDB: 2yvx_A
Length = 473
Score = 28.6 bits (63), Expect = 0.88
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 108 LDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMI 158
+ + AA L + P+ + L L P + I+ +++
Sbjct: 69 YVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADA 119
>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion,
structural protein; 2.80A {Thermotoga maritima} SCOP:
a.118.14.1
Length = 232
Score = 27.0 bits (59), Expect = 2.2
Identities = 9/57 (15%), Positives = 21/57 (36%)
Query: 109 DIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANM 165
+ D L+ P + +L L P ++ I+ + + T + +A +
Sbjct: 6 SFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALL 62
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 27.1 bits (59), Expect = 2.3
Identities = 10/67 (14%), Positives = 26/67 (38%)
Query: 61 YLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSDSAA 120
+ S++ + + QK + + + K E +LW + + I + + S+ A
Sbjct: 30 WTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQA 89
Query: 121 LQLEQID 127
++
Sbjct: 90 NLSLFLE 96
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif,
superhelix, conformational plasticit repeat, torque
generation; 2.40A {Aquifex aeolicus}
Length = 329
Score = 26.9 bits (59), Expect = 2.4
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 15/101 (14%)
Query: 51 NVIDSVRERDYLSQ-KKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILD 109
N +D L + L++ I +++ E+ +++I++
Sbjct: 208 NTLDKETRELILQSIGQEDPLLEERIREKMFTFED--------------IRKLSDRDIIE 253
Query: 110 IYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKM 150
I K +D ++ + L DI L +S R + L + M
Sbjct: 254 ILKVVDKNTLMIALLGAPEDIKQKFLSNMSKRAAKLFLEDM 294
>1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A {Rice
dwarf virus} SCOP: e.28.1.2
Length = 1019
Score = 26.5 bits (58), Expect = 3.5
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 14/64 (21%)
Query: 98 SFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATM 157
+FI+SY K+I D + ++ DSA +P ++ H + +I S +N A M
Sbjct: 92 TFIVSYAKDIYDKFMCIEHDSA------YEPSLTMHRV--------RVIYSMLNDYCAKM 137
Query: 158 ITNV 161
I+ V
Sbjct: 138 ISEV 141
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel,
hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
Length = 678
Score = 26.2 bits (57), Expect = 3.7
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 64 QKKVLEDLQKDIEQRVILL-ENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSDSAALQ 122
++ LE K ++ + L E+ + E ++ + +NKN+ + + A L
Sbjct: 139 ARRYLEKSIKMGKRNGLHLSEHIRNEIKSMKKRMSELCIDFNKNLNEDDTSLVFSKAELG 198
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, alternative splicing, amyloid,
amyloidosis, blood coagulation, coiled coil; HET: NAG
NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 26.4 bits (57), Expect = 4.1
Identities = 13/94 (13%), Positives = 31/94 (32%)
Query: 58 ERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSD 117
+ + LED+ +E + ++ K L + +S + +KM +
Sbjct: 33 QTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEE 92
Query: 118 SAALQLEQIDPDISSHILMRLSPRQSSLIMSKMN 151
+ + D S L + + I++
Sbjct: 93 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKE 126
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+
transporter, structural genomics, PSI-2; 2.41A
{Shewanella oneidensis mr-1}
Length = 205
Score = 26.2 bits (57), Expect = 4.6
Identities = 6/45 (13%), Positives = 14/45 (31%)
Query: 114 MDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMI 158
M + L Q+ P+ L + +++M +
Sbjct: 1 MPDNEVDLLFAQLSPEDLIEWSDYLPESFTDRALAQMGERQRQRF 45
>2q97_T Toxofilin, actin, alpha skeletal muscle; structural protein,
structural protein/cell invasion complex; HET: HIC ATP;
2.50A {Toxoplasma gondii}
Length = 129
Score = 25.8 bits (56), Expect = 5.0
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 64 QKKVLEDLQKDI-----EQRVILLENHKKEYNL 91
Q+K E +Q+D+ E + +L+EN +KE L
Sbjct: 67 QQKAYEQVQRDLSQLSPETKALLIENQRKEKTL 99
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A
{Saccharomyces cerevisiae} SCOP: a.118.1.9
Length = 480
Score = 25.4 bits (55), Expect = 7.5
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 53 IDSVRERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMS 102
+ S+ ER K E+L++DI +LEN +E + +Y + + S
Sbjct: 324 VQSLSER-----KYSDEELRQDISNLKEILENEYQELTSF-DEYVAELDS 367
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding
channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Length = 674
Score = 25.5 bits (55), Expect = 7.6
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 64 QKKVLEDLQKDIEQRVILL-ENHKKEYNLWFQKYDSFIMSYNKNILD 109
+ LE L K + + L ++ +K + +NKN+ +
Sbjct: 123 AARYLERLIKLGRRNGLHLPRETQENIKRIKKKLSLLCIDFNKNLNE 169
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor,
IP3-binding core, calcium channel,protein- ligand
complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus}
SCOP: a.118.22.1 b.42.6.1
Length = 381
Score = 25.0 bits (54), Expect = 9.4
Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 24/133 (18%)
Query: 11 KKRDMLSQLLFLLFFFLQGFAN-------QSYGDPT------LVDREIQQYCTNVIDSVR 57
+R +++LL L +F+ G N + P + ++ I + ++ +
Sbjct: 245 NERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPF 304
Query: 58 ERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSD 117
LE+L + L ++ Y KN I K+
Sbjct: 305 TDCGDGPMLRLEELGDQRH------APFRHICRLCYRVLRHSQQDYRKNQEYIAKQFG-- 356
Query: 118 SAALQLEQIDPDI 130
+QI D+
Sbjct: 357 ---FMQKQIGYDV 366
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP:
d.25.1.1
Length = 209
Score = 24.9 bits (54), Expect = 9.6
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 60 DYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMS 102
D+L+ + V ++ + LE+ +EY + + SF+ S
Sbjct: 168 DFLADRGVDNTFADELVELSTALEH--QEYITFLEDLKSFVKS 208
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.136 0.379
Gapped
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,450,773
Number of extensions: 64390
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 38
Length of query: 175
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 89
Effective length of database: 3,608,246
Effective search space: 321133894
Effective search space used: 321133894
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)