HHsearch alignment for GI: 254780376 and conserved domain: COG1706

>COG1706 FlgI Flagellar basal-body P-ring protein [Cell motility and secretion].
Probab=100.00  E-value=0  Score=918.84  Aligned_cols=362  Identities=55%  Similarity=0.832  Sum_probs=343.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             67899999999997425700100100013640001430267878876388999887746899999999998297457321
Q gi|254780376|r    2 IFRIAFLIFSLIGLHEISAQVVSRIKDVVSLQSGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRSLLQNLGISTPGGR   81 (369)
Q Consensus         2 ~~~~~~l~~~~~~~~~~~~~~a~rikDi~~i~GvR~NqL~GyGLVVGL~GTGD~~~~~~~t~qsl~nml~~~Gv~~~~~~   81 (369)
T Consensus         2 ~~~~~~-~~~~~l~~~~~~~~a~rIKDiasiqgvRdNqLiGYGLVVGL~GtGD~~~~spfT~QSi~nML~~~gI~v~~~~   80 (365)
T COG1706           2 MLKLIT-LALLLLLTTAKAAQAERIKDIASIQGVRDNQLIGYGLVVGLDGTGDQLTQSPFTKQSINNMLEQLGIKVPPGD   80 (365)
T ss_pred             CEEHHH-HHHHHHHHHCCHHHHHHHHCCEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf             220489-9999998733056554330110450234562577779996156677655786539999999998697579998


Q ss_pred             -CCCCCEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECCEEECCCCCCCCCCCCCC
Q ss_conf             -4655326999999717877568768999956888454447779995214778618999816168334324567652004
Q gi|254780376|r   82 -LGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLRGGILVMTSLLGADGNIYAVAQGSVVVSGLFVKGQSSSFME  160 (369)
Q Consensus        82 -~~~kNvAaVmVtA~lPpfa~~G~~iDv~VSSiGdAkSL~GG~LL~TpL~g~dg~vyAvAQG~i~vgg~~~~g~~~~~~~  160 (369)
T Consensus        81 n~~sKNvAAVmVTA~LPpfa~~G~kiDv~VSSiGdAKSL~GGtLLmTpLkG~DGqiYAvAQG~vivgg~~a~g~~s~~~~  160 (365)
T COG1706          81 NIKSKNVAAVMVTASLPPFARQGSKIDVTVSSIGDAKSLRGGTLLMTPLKGADGQIYAVAQGNVIVGGFSAAGGGSSVTV  160 (365)
T ss_pred             CCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECCEEECCCCCCCCCCCEEC
T ss_conf             74400368999974689767899757899953555433569668861046888738999734587656445676642002


Q ss_pred             CCCCCEEEECCEEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECCCCCCHHH
Q ss_conf             76542174165488741354324776499995078878999999999875202456541245115636863288752121
Q gi|254780376|r  161 GISTGGKIVNGAIVERELPKKFKDSADLILQLRNPDFSTAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTR  240 (369)
Q Consensus       161 n~~t~GrIp~Ga~VErev~~~f~~~~~l~L~L~~pdfttA~~ia~aIN~~~~~~~g~~~A~a~d~~~I~v~~P~~~~~v~  240 (369)
T Consensus       161 ~~~t~Gri~nGAiIERevp~~f~~~~~~~l~L~~pdFttA~riad~iN~----~fg~~~A~aids~ti~v~~P~~~s~v~  236 (365)
T COG1706         161 NVPTSGRIPNGAIIEREVPSNFGDGNTLNLQLKNPDFTTAQRIADAINR----VFGKGIATAIDSRTIQVRVPKGASRVR  236 (365)
T ss_pred             CCCCCEECCCCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH----HHCCCCCCCCCCCCEEEECCCCCCHHH
T ss_conf             6644136058726873078776778559999679981789999999986----526343433477726885688863778


Q ss_pred             HHHHHHCCCCCCCCCCEEEEECCCCEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEECCC
Q ss_conf             32232201268789835999447634994597399899984170799963776665776545687344236641456046
Q gi|254780376|r  241 LMSEVEMLTVETDTPARVIINERTGTIVIGDNVRISKVVVSYGNLTVQITENEQVVQPNAFSSNGSTVTQNNTDLKVSDN  320 (369)
Q Consensus       241 fla~ie~l~V~~~~~akVVINerTGTIV~g~~V~I~pvaVsHGnLtI~I~~~~~vsqp~~~~~~g~t~~~~~t~i~v~e~  320 (369)
T Consensus       237 fla~ieni~I~~~~~aKVVIn~RTGtIV~g~~V~i~~~avs~g~ltv~I~e~p~v~qp~pf-~~gqt~v~p~t~I~v~~~  315 (365)
T COG1706         237 FLAEIENIEIETDTPAKVVINERTGTIVIGEDVKISPVAVSHGNLTVTITEQPNVSQPAPF-SGGQTVVVPKTTIEVNQE  315 (365)
T ss_pred             HHHHHHCCCCCCCCCCEEEEECCCCEEEECCCEEEEEEEEEECCEEEEEEECCCCCCCCCC-CCCCEEECCCCEEEEECC
T ss_conf             9988627521489986499957845699788548867889707678999816655788877-788334246760377437


Q ss_pred             CCE-EEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             735-8973898899999999847998789999999998716856258969
Q gi|254780376|r  321 KGS-FSLIDAPDLNSLISGMNSIGLKTDGIISILQGIKAAGALQSEIIIQ  369 (369)
Q Consensus       321 ~~~-~~~~~~~tl~~lV~ALN~lG~tp~DlIsILqalk~aGAL~AELiI~  369 (369)
T Consensus       316 ~~~~~~~~~~~tl~~lV~aLn~iGa~P~diiaILQalk~AGal~A~L~i~  365 (365)
T COG1706         316 KGKLFILKGGTTLNNLVRALNAIGATPQDIIAILQALKSAGALQAELEII  365 (365)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEC
T ss_conf             87378517888689999999984589789999999998758344344769