Query gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 369
No_of_seqs 122 out of 669
Neff 4.9
Searched_HMMs 23785
Date Mon May 30 10:28:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780376.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hrz_B Cobra venom factor; ser 53.1 8.2 0.00035 17.3 2.8 26 89-114 81-106 (252)
2 3idw_A Actin cytoskeleton-regu 52.2 11 0.00045 16.5 3.4 23 337-359 42-64 (72)
3 2fhz_B Colicin-E5; protein-pro 31.2 19 0.00079 14.8 1.8 13 256-268 72-84 (108)
4 3gmg_A Uncharacterized protein 29.4 24 0.00099 14.1 2.8 34 39-74 32-65 (170)
5 2gm2_A Conserved hypothetical 27.2 17 0.00072 15.1 1.0 39 51-92 71-121 (132)
6 2i8g_A Hypothetical protein DI 23.1 30 0.0013 13.4 2.1 23 120-147 105-127 (151)
7 1z69_A COG2141, coenzyme F420- 21.7 32 0.0014 13.2 2.6 28 333-361 273-300 (327)
8 2fvt_A Conserved hypothetical 21.0 21 0.0009 14.4 0.6 12 66-77 86-97 (135)
9 2pn5_A TEP1R, thioester-contai 20.4 34 0.0014 13.0 3.2 22 92-114 499-520 (1325)
10 1o8b_A Ribose 5-phosphate isom 20.4 34 0.0014 13.0 2.3 66 40-113 17-83 (219)
11 3gr5_A ESCC; secretin, type II 20.4 34 0.0014 13.0 7.5 16 255-270 118-133 (156)
12 2k2p_A Uncharacterized protein 20.2 35 0.0015 13.0 4.0 15 332-346 70-84 (85)
No 1
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=53.11 E-value=8.2 Score=17.31 Aligned_cols=26 Identities=4% Similarity=0.143 Sum_probs=21.5
Q ss_pred EEEEEEEECCCCCCCCEEEEEEECCC
Q ss_conf 99999971787756876899995688
Q gi|254780376|r 89 AVMVTANLPPFASPGSRIDVSINSLG 114 (369)
Q Consensus 89 aVmVtA~lPpfa~~G~~iDv~VSSiG 114 (369)
-+|+..+||.|.++|+++.+.++-..
T Consensus 81 p~~v~~~lP~~v~~GD~~~v~v~v~N 106 (252)
T 3hrz_B 81 VFFIDLQMPYSVVKNEQVEIRAILHN 106 (252)
T ss_dssp SEEEEECCCSCEETTCCEEEEEEEEE
T ss_pred CEEEECCCCCEEECCCEEEEEEEEEE
T ss_conf 28998178858977989999999992
No 2
>3idw_A Actin cytoskeleton-regulatory complex protein SLA1; clathrin adaptor, endocytosis, SAM domain, yeast, actin- binding, cell membrane; 1.85A {Saccharomyces cerevisiae}
Probab=52.17 E-value=11 Score=16.54 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=19.9
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 99984799878999999999871
Q gi|254780376|r 337 SGMNSIGLKTDGIISILQGIKAA 359 (369)
Q Consensus 337 ~ALN~lG~tp~DlIsILqalk~a 359 (369)
+-|..||.+.-|+|+|++.++..
T Consensus 42 ~~Lr~LGi~eGDII~V~k~l~~k 64 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVMKHLDKK 64 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99998498267799999999998
No 3
>2fhz_B Colicin-E5; protein-protein complex, inhibition of ribonuclease, immune system, hydrolase; 1.15A {Escherichia coli} SCOP: d.243.1.2 PDB: 2a8k_A 2dfx_E 2djh_A*
Probab=31.19 E-value=19 Score=14.84 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=11.4
Q ss_pred CEEEEECCCCEEE
Q ss_conf 3599944763499
Q gi|254780376|r 256 ARVIINERTGTIV 268 (369)
Q Consensus 256 akVVINerTGTIV 268 (369)
.-||||.|||-||
T Consensus 72 ~YVVVnDrTGEvv 84 (108)
T 2fhz_B 72 KYVVVNDRTGEVT 84 (108)
T ss_dssp EEEEEETTTCBEE
T ss_pred CEEEEECCCCCEE
T ss_conf 8898846865268
No 4
>3gmg_A Uncharacterized protein RV1825/MT1873; structural genomics, unknown function, cell membrane, membrane, transmembrane, PSI-2; 1.50A {Mycobacterium tuberculosis}
Probab=29.38 E-value=24 Score=14.15 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=17.8
Q ss_pred CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 026787887638899988774689999999999829
Q gi|254780376|r 39 QLIGYGLVVGLQGTGDSLRSSPFTEQSMRSLLQNLG 74 (369)
Q Consensus 39 qL~GyGLVVGL~GTGD~~~~~~~t~qsl~nml~~~G 74 (369)
...|=|+++-|+.-.+. -.+-..+.+.|-|..-|
T Consensus 32 ~V~GpGI~Iti~d~~~~--v~~~dl~~vvNeL~~aG 65 (170)
T 3gmg_A 32 GATGPGVMITIDDPGPG--VAPEVMIDVINELRAAG 65 (170)
T ss_dssp CEEEEEEEEEEECSSCC--CCHHHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEECCCCC--CCHHHHHHHHHHHHHCC
T ss_conf 68988199999489988--79999999999999779
No 5
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=27.16 E-value=17 Score=15.10 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=24.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC------------CCCCEEEEEE
Q ss_conf 89998877468999999999982974573214------------6553269999
Q gi|254780376|r 51 GTGDSLRSSPFTEQSMRSLLQNLGISTPGGRL------------GSKNVAAVMV 92 (369)
Q Consensus 51 GTGD~~~~~~~t~qsl~nml~~~Gv~~~~~~~------------~~kNvAaVmV 92 (369)
|||+..+ |-...+.+.++++|+.+..-+. ..|||||.++
T Consensus 71 GtG~~~~---~~~~~~~~~l~~~gI~vE~M~T~aAcrTyNvL~sEgR~VaAaLi 121 (132)
T 2gm2_A 71 GTGERQQ---FPSTDVLAACLTRGIGLEAMTNAAAARTYNVLASEGRRVALAMI 121 (132)
T ss_dssp ECTTSCC---CCCHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred ECCCCCC---CCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 3699778---99999999999879979981809999999998736763799990
No 6
>2i8g_A Hypothetical protein DIP2269; structural genomics, APC82926, PSI-2, protein structure initiative; HET: MSE; 1.74A {Corynebacterium diphtheriae NCTC13129} SCOP: d.107.1.4
Probab=23.06 E-value=30 Score=13.38 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=14.3
Q ss_pred CCCEEEEEECCCCCCCEEEEEECCEEEC
Q ss_conf 4777999521477861899981616833
Q gi|254780376|r 120 RGGILVMTSLLGADGNIYAVAQGSVVVS 147 (369)
Q Consensus 120 ~GG~LL~TpL~g~dg~vyAvAQG~i~vg 147 (369)
.||..- ..||-|||++.|+..+=
T Consensus 105 ~GGr~~-----~~~gAVYAV~Kg~~AVv 127 (151)
T 2i8g_A 105 SGGRAG-----HEEGAVYAVQKGPVAVV 127 (151)
T ss_dssp EEEEEE-----ETTEEEEEEEETTEEEE
T ss_pred CCCCCC-----CCCCCEEEEEECCEEEE
T ss_conf 366455-----88843899973890899
No 7
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)- methylenetetrahydromethanopterin reductase; (alpha, beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A {Methanosarcina barkeri}
Probab=21.65 E-value=32 Score=13.20 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=23.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999998479987899999999987168
Q gi|254780376|r 333 NSLISGMNSIGLKTDGIISILQGIKAAGA 361 (369)
Q Consensus 333 ~~lV~ALN~lG~tp~DlIsILqalk~aGA 361 (369)
.++++++.-+| ||+++++.|++++++|.
T Consensus 273 ~~~~~~~~lvG-tpe~v~e~l~~~~e~G~ 300 (327)
T 1z69_A 273 PQMIEAFSICG-TPDDCMKRIKDLEAIGV 300 (327)
T ss_dssp HHHHHHHCEEE-SHHHHHHHHHHHHHTTC
T ss_pred HHHHCCEEEEE-CHHHHHHHHHHHHHCCC
T ss_conf 88870308982-89999999999997499
No 8
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=21.01 E-value=21 Score=14.44 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=4.6
Q ss_pred HHHHHHHCCCCC
Q ss_conf 999999829745
Q gi|254780376|r 66 MRSLLQNLGIST 77 (369)
Q Consensus 66 l~nml~~~Gv~~ 77 (369)
+.+.|+++||.+
T Consensus 86 l~~~l~~~gI~v 97 (135)
T 2fvt_A 86 LREALRGVNVVL 97 (135)
T ss_dssp HHHHHHTTTCEE
T ss_pred HHHHHHHCCCEE
T ss_conf 999999779989
No 9
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=20.45 E-value=34 Score=13.03 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=15.0
Q ss_pred EEEEECCCCCCCCEEEEEEECCC
Q ss_conf 99971787756876899995688
Q gi|254780376|r 92 VTANLPPFASPGSRIDVSINSLG 114 (369)
Q Consensus 92 VtA~lPpfa~~G~~iDv~VSSiG 114 (369)
++.+ |+-.+||+++.++|++--
T Consensus 499 v~~~-~~~~~Pg~~v~i~v~~~~ 520 (1325)
T 2pn5_A 499 LSID-EQEIKPGRQIELSMSGRP 520 (1325)
T ss_dssp EEEC-SSCCCTTSEEEEEEESCT
T ss_pred EEEC-CCCCCCCCEEEEEEEECC
T ss_conf 8846-012589974899999579
No 10
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein structure initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=20.44 E-value=34 Score=13.03 Aligned_cols=66 Identities=12% Similarity=0.212 Sum_probs=36.3
Q ss_pred EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCC-CCCCEEEEEEECC
Q ss_conf 2678788763889998877468999999999982974573214655326999999717877-5687689999568
Q gi|254780376|r 40 LIGYGLVVGLQGTGDSLRSSPFTEQSMRSLLQNLGISTPGGRLGSKNVAAVMVTANLPPFA-SPGSRIDVSINSL 113 (369)
Q Consensus 40 L~GyGLVVGL~GTGD~~~~~~~t~qsl~nml~~~Gv~~~~~~~~~kNvAaVmVtA~lPpfa-~~G~~iDv~VSSi 113 (369)
++-=|.|+|| |||.. ..+..+.|..... ..+..-+...++.. ..-.+-+|-.. ...++||+++--.
T Consensus 17 ~i~~gmviGL-GtGsT---v~~~i~~L~~~~~-~~~~~v~ss~~t~~---~a~~~Gi~l~~~~~~~~iDiaiDGa 83 (219)
T 1o8b_A 17 YVQPGTIVGV-GTGST---AAHFIDALGTMKG-QIEGAVSSSDASTE---KLKSLGIHVFDLNEVDSLGIYVDGA 83 (219)
T ss_dssp ------CEEE-CCSCC-------------------CCEEESCCC---------------CCGGGCSCEEEEEECC
T ss_pred HCCCCCEEEE-CCHHH---HHHHHHHHHHHHC-CCEEEEECCHHHHH---HHHHHCCCCCCHHHCCCCCEEEECC
T ss_conf 4799999986-86699---9999999986227-76078758589999---9987166656865678767675173
No 11
>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli}
Probab=20.38 E-value=34 Score=13.02 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=7.9
Q ss_pred CCEEEEECCCCEEEEC
Q ss_conf 8359994476349945
Q gi|254780376|r 255 PARVIINERTGTIVIG 270 (369)
Q Consensus 255 ~akVVINerTGTIV~g 270 (369)
..+|..+++++++++.
T Consensus 118 ~~~v~~~~~~n~liv~ 133 (156)
T 3gr5_A 118 SCNVRKITTFNSIEVR 133 (156)
T ss_dssp TEEEEECSSTTCEEEE
T ss_pred CCEEEECCCCCEEEEE
T ss_conf 8505656987789999
No 12
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str}
Probab=20.16 E-value=35 Score=12.99 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=6.1
Q ss_pred HHHHHHHHHHCCCCH
Q ss_conf 999999998479987
Q gi|254780376|r 332 LNSLISGMNSIGLKT 346 (369)
Q Consensus 332 l~~lV~ALN~lG~tp 346 (369)
..+|.++|..+|-+|
T Consensus 70 ~~~i~~aI~~~GY~~ 84 (85)
T 2k2p_A 70 AAHIAEIITAAGYTP 84 (85)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999999849798
Done!