Query gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 369
No_of_seqs 122 out of 669
Neff 4.9
Searched_HMMs 13730
Date Wed Jun 1 03:52:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780376.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jmxa3 b.1.18.14 (A:282-363) 44.9 7.9 0.00057 15.8 4.6 41 92-133 5-47 (82)
2 d1r17a1 b.2.3.4 (A:276-424) Fi 38.0 10 0.00073 15.1 3.4 54 85-141 29-86 (149)
3 d1n67a1 b.2.3.4 (A:229-369) Cl 34.9 11 0.00081 14.8 3.1 51 89-141 30-80 (141)
4 d1dpua_ a.4.5.16 (A:) C-termin 33.9 12 0.00084 14.7 2.8 36 327-364 21-56 (69)
5 d2fhzb1 d.243.1.2 (B:12-104) C 32.1 10 0.00074 15.0 1.8 13 256-268 61-73 (93)
6 d2fvta1 c.103.1.1 (A:1-127) Hy 20.9 15 0.0011 13.9 0.9 20 265-284 22-41 (127)
7 d1fxja1 b.81.1.4 (A:252-329) N 19.8 20 0.0015 12.9 1.8 32 253-287 4-35 (78)
8 d3es6b1 b.1.18.23 (B:1-118) Pr 19.4 20 0.0015 13.0 1.4 35 90-125 8-44 (118)
9 d1e8ga2 d.145.1.1 (A:6-273) Va 18.6 22 0.0016 12.8 4.6 30 315-344 126-155 (268)
10 d1ueba3 b.40.4.5 (A:127-184) E 18.0 22 0.0016 12.7 2.0 17 92-108 31-47 (58)
No 1
>d1jmxa3 b.1.18.14 (A:282-363) Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 {Pseudomonas putida [TaxId: 303]}
Probab=44.91 E-value=7.9 Score=15.79 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=30.7
Q ss_pred EEEEECCCCCCCCEEEEEE--ECCCCCCCCCCCEEEEEECCCCC
Q ss_conf 9997178775687689999--56888454447779995214778
Q gi|254780376|r 92 VTANLPPFASPGSRIDVSI--NSLGDASSLRGGILVMTSLLGAD 133 (369)
Q Consensus 92 VtA~lPpfa~~G~~iDv~V--SSiGdAkSL~GG~LL~TpL~g~d 133 (369)
+++-.|++.+.|....+++ +-+.|+..|.-| +-.+++...+
T Consensus 5 l~aV~P~g~q~G~~~evti~G~~L~~~~~l~~G-i~~~~v~~~~ 47 (82)
T d1jmxa3 5 LLAVQPAFIKAGGESEITLVGSGLAGKPDLGAG-VEVTEVLEQT 47 (82)
T ss_dssp EEEEESSEEETTCEEEEEEEEESCCSCEECCTT-EEEEEEEEEC
T ss_pred EEEECCCCCCCCCEEEEEEEECCCCCCCCCCCC-CEEEEEEECC
T ss_conf 899878866788789999980465875314998-1899866048
No 2
>d1r17a1 b.2.3.4 (A:276-424) Fibrinogen-binding adhesin SdrG {Staphylococcus epidermidis [TaxId: 1282]}
Probab=37.99 E-value=10 Score=15.08 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=33.9
Q ss_pred CCEEEEEEEEEEC--CCCCCCCEEEEEEECCCCCCCCCCCEE--EEEECCCCCCCEEEEEE
Q ss_conf 5326999999717--877568768999956888454447779--99521477861899981
Q gi|254780376|r 85 KNVAAVMVTANLP--PFASPGSRIDVSINSLGDASSLRGGIL--VMTSLLGADGNIYAVAQ 141 (369)
Q Consensus 85 kNvAaVmVtA~lP--pfa~~G~~iDv~VSSiGdAkSL~GG~L--L~TpL~g~dg~vyAvAQ 141 (369)
..-..+....++| .-.++|+.+++.++.-.+ +.|+.. +.-+++..+|+++|.|+
T Consensus 29 ~~~~~~~~~~~~~~~~~vk~GD~fti~lp~~l~---~~~~~~~~~~~~~~~~~G~via~~~ 86 (149)
T d1r17a1 29 HDAENLIYDVTFEVDDKVKSGDTMTVNIDKNTV---PSDLTDSFAIPKIKDNSGEIIATGT 86 (149)
T ss_dssp TBTCCEEEEEEEEECTTCCTTCEEEEECCTTEE---SCSSCSCCCCCCEEETTCCEEEEEE
T ss_pred CCCCEEEEEEEEECCCCCCCCCEEEEECCCCEE---ECCCCCCCCCCCEECCCCCEEEEEE
T ss_conf 998389999987779878999899998797453---0664466566523879997999999
No 3
>d1n67a1 b.2.3.4 (A:229-369) Clumping factor A {Staphylococcus aureus [TaxId: 1280]}
Probab=34.95 E-value=11 Score=14.76 Aligned_cols=51 Identities=10% Similarity=0.095 Sum_probs=31.9
Q ss_pred EEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEE
Q ss_conf 99999971787756876899995688845444777999521477861899981
Q gi|254780376|r 89 AVMVTANLPPFASPGSRIDVSINSLGDASSLRGGILVMTSLLGADGNIYAVAQ 141 (369)
Q Consensus 89 aVmVtA~lPpfa~~G~~iDv~VSSiGdAkSL~GG~LL~TpL~g~dg~vyAvAQ 141 (369)
-+-..-++|.-.++|+.+++.++.--+-.+..-.. .-|+...+|+++|.|+
T Consensus 30 ~~~~~~~i~~~vk~GD~ft~~lp~~l~~~~~~~~~--~~~~~~~~g~via~~~ 80 (141)
T d1n67a1 30 KLNYGFSVPNSAVKGDTFKITVPKELNLNGVTSTA--KVPPIMAGDQVLANGV 80 (141)
T ss_dssp EEEEEEECCTTCCTTCEEEEBCCTTEEESSSSTTC--CCCCEEETTEEEEEEE
T ss_pred EEEEEEECCCCCCCCCEEEEECCCCEEECCCCCCC--CCCCCCCCCCEEEEEE
T ss_conf 99999863888899989999889657735766643--2552638995999999
No 4
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.94 E-value=12 Score=14.65 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 38988999999998479987899999999987168562
Q gi|254780376|r 327 IDAPDLNSLISGMNSIGLKTDGIISILQGIKAAGALQS 364 (369)
Q Consensus 327 ~~~~tl~~lV~ALN~lG~tp~DlIsILqalk~aGAL~A 364 (369)
++|.++++|..-|+ |.++.++-.+++-|-..|-++-
T Consensus 21 ~eGi~~~el~~~l~--~~~~~~i~~aid~L~~eG~IYs 56 (69)
T d1dpua_ 21 PEGLNFQDLKNQLK--HMSVSSIKQAVDFLSNEGHIYS 56 (69)
T ss_dssp TTTEEHHHHHHHST--TSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHCC--CCCHHHHHHHHHHHHHCCCEEC
T ss_conf 56838999998816--9999999999999983785551
No 5
>d2fhzb1 d.243.1.2 (B:12-104) Colicin E5 {Escherichia coli [TaxId: 562]}
Probab=32.14 E-value=10 Score=15.01 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=11.4
Q ss_pred CEEEEECCCCEEE
Q ss_conf 3599944763499
Q gi|254780376|r 256 ARVIINERTGTIV 268 (369)
Q Consensus 256 akVVINerTGTIV 268 (369)
.-||||.|||-||
T Consensus 61 ~YVVVnDrTgEvv 73 (93)
T d2fhzb1 61 KYVVVNDRTGEVT 73 (93)
T ss_dssp EEEEEETTTCBEE
T ss_pred CEEEEECCCCCEE
T ss_conf 8899846865268
No 6
>d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=20.88 E-value=15 Score=13.92 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=8.3
Q ss_pred CEEEECCCEEEEEEEEECCC
Q ss_conf 34994597399899984170
Q gi|254780376|r 265 GTIVIGDNVRISKVVVSYGN 284 (369)
Q Consensus 265 GTIV~g~~V~I~pvaVsHGn 284 (369)
|-+.+++..--.++.+.-+.
T Consensus 22 g~f~I~g~~y~~siii~p~~ 41 (127)
T d2fvta1 22 GGFYFAGMSHQGSLLFLPDA 41 (127)
T ss_dssp TEEECSSSEECSEEEECSSC
T ss_pred CEEEECCEEEECCEEEECCC
T ss_conf 96999999985289997883
No 7
>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.81 E-value=20 Score=12.94 Aligned_cols=32 Identities=38% Similarity=0.591 Sum_probs=22.0
Q ss_pred CCCCEEEEECCCCEEEECCCEEEEEEEEECCCEEE
Q ss_conf 89835999447634994597399899984170799
Q gi|254780376|r 253 DTPARVIINERTGTIVIGDNVRISKVVVSYGNLTV 287 (369)
Q Consensus 253 ~~~akVVINerTGTIV~g~~V~I~pvaVsHGnLtI 287 (369)
..|+|+-|+ |.+.+|.|+.|.|-++-+|+.+|
T Consensus 4 ~dP~~~~I~---g~v~IG~~~~I~~~~~i~g~~~I 35 (78)
T d1fxja1 4 RDPARFDLR---GTLTHGRDVEIDTNVIIEGNVTL 35 (78)
T ss_dssp SCGGGEEEE---EEEEECSSCEECTTEEEEEEEEE
T ss_pred ECCCEEEEE---CCEEECCCCEECCCCEEECCCEE
T ss_conf 899858995---62999999999986599697299
No 8
>d3es6b1 b.1.18.23 (B:1-118) Prolactin-inducible protein, PIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.45 E-value=20 Score=13.01 Aligned_cols=35 Identities=6% Similarity=0.178 Sum_probs=24.1
Q ss_pred EEEEEEECCCCCCCCEEEEEE--ECCCCCCCCCCCEEE
Q ss_conf 999997178775687689999--568884544477799
Q gi|254780376|r 90 VMVTANLPPFASPGSRIDVSI--NSLGDASSLRGGILV 125 (369)
Q Consensus 90 VmVtA~lPpfa~~G~~iDv~V--SSiGdAkSL~GG~LL 125 (369)
.||.-+||.|.++|+.+.+.+ ....+ +.+.+-.-|
T Consensus 8 ~~~~l~lP~sv~rge~~~i~~~V~Nyl~-~~~~v~v~L 44 (118)
T d3es6b1 8 IIKNFDIPKSVRPNDEVTAVLAVQTELK-ECMVVKTYL 44 (118)
T ss_dssp CEECCCCCSEECSSCCEEEEEEEEECCS-SCEEEEEEE
T ss_pred EEEECCCCCEEECCCEEEEEEEEEECCC-CEEEEEEEE
T ss_conf 8998679946766988999999997744-207899997
No 9
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]}
Probab=18.65 E-value=22 Score=12.77 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=17.4
Q ss_pred EEECCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 456046735897389889999999984799
Q gi|254780376|r 315 LKVSDNKGSFSLIDAPDLNSLISGMNSIGL 344 (369)
Q Consensus 315 i~v~e~~~~~~~~~~~tl~~lV~ALN~lG~ 344 (369)
++++++...+.+..|+++.||.+.|.+.|.
T Consensus 126 ~~id~~~~~~~v~aGv~~~~l~~~l~~~G~ 155 (268)
T d1e8ga2 126 LEVNVEGAYCVVEPGVTYHDLHNYLEANNL 155 (268)
T ss_dssp EEEETTTTEEEECTTCBHHHHHHHHHHTTC
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 111454301112033405888898987765
No 10
>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}
Probab=18.03 E-value=22 Score=12.68 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=0.0
Q ss_pred EEEEECCCCCCCCEEEE
Q ss_conf 99971787756876899
Q gi|254780376|r 92 VTANLPPFASPGSRIDV 108 (369)
Q Consensus 92 VtA~lPpfa~~G~~iDv 108 (369)
.+-..|+|-+.|++|-|
T Consensus 31 ~~i~VP~FI~~Gd~I~V 47 (58)
T d1ueba3 31 AVVQVPLFVEPGEVIKV 47 (58)
T ss_dssp CEEEEETTCCTTCEEEE
T ss_pred CEEECCCCCCCCCEEEE
T ss_conf 99983884459999999
Done!