RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring
protein [Candidatus Liberibacter asiaticus str. psy62]
         (369 letters)



>gnl|CDD|145332 pfam02119, FlgI, Flagellar P-ring protein. 
          Length = 342

 Score =  458 bits (1180), Expect = e-129
 Identities = 189/347 (54%), Positives = 238/347 (68%), Gaps = 7/347 (2%)

Query: 25  RIKDVVSLQSGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRSLLQNLGISTPGGRLGS 84
           RIKD+ S++  RDNQL+GYGLVVGL GTGDSL  SPFTEQS+ ++L+ LG++ P   + S
Sbjct: 1   RIKDIASIEGVRDNQLVGYGLVVGLNGTGDSLTQSPFTEQSLANMLERLGVNIPPNNIKS 60

Query: 85  KNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLRGGILVMTSLLGADGNIYAVAQGSV 144
           KNVAAVMVTA LPPFA PG RIDV+++S+GDA SLRGG L+MT L GADG +YAVAQG++
Sbjct: 61  KNVAAVMVTATLPPFAKPGQRIDVTVSSIGDAKSLRGGTLLMTPLKGADGEVYAVAQGNL 120

Query: 145 VVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPKKFKDSADLILQLRNPDFSTAIRIA 204
           VV G   +G  SS    + T G+I NGAIVERE+P  F     L L LRNPDF+TA RIA
Sbjct: 121 VVGGFGAEGAGSSVTVNVPTVGRIPNGAIVEREVPFDFGQGDSLTLNLRNPDFTTANRIA 180

Query: 205 DQINSYSLNRFSRPIAEAYDSRTVKVSKPTNI-DLTRLMSEVEMLTVETDTPARVIINER 263
           D IN     RF   +A A D+RT++V  P +       ++E+E L VE D PA+V+INER
Sbjct: 181 DAIN----ARFGPGVARALDARTIEVRAPRDYSQRVSFLAEIENLEVEPDAPAKVVINER 236

Query: 264 TGTIVIGDNVRISKVVVSYGNLTVQITENEQVVQPNAFSSNGSTVTQNNTDLKVSDNKGS 323
           TGTIVIG NVRIS V VS+GNLTV ITE  QV QPN F S G TV    TD+ V +  G 
Sbjct: 237 TGTIVIGQNVRISPVAVSHGNLTVTITETPQVSQPNPF-SGGQTVVVPRTDIDVEEEGGR 295

Query: 324 FSLIDA-PDLNSLISGMNSIGLKTDGIISILQGIKAAGALQSEIIIQ 369
             ++     L  L+  +N++G     +I+ILQ +KAAGAL +E+ + 
Sbjct: 296 LFVLPPGASLADLVRALNALGATPRDLIAILQALKAAGALHAELEVI 342


>gnl|CDD|31892 COG1706, FlgI, Flagellar basal-body P-ring protein [Cell motility
           and secretion].
          Length = 365

 Score =  394 bits (1014), Expect = e-110
 Identities = 197/371 (53%), Positives = 251/371 (67%), Gaps = 9/371 (2%)

Query: 1   MIFRIAFLIFSLIGLHEISAQVVSRIKDVVSLQSGRDNQLIGYGLVVGLQGTGDSLRSSP 60
           M+  I   +  L+      A    RIKD+ S+Q  RDNQLIGYGLVVGL GTGD L  SP
Sbjct: 2   MLKLITLALLLLLTTA--KAAQAERIKDIASIQGVRDNQLIGYGLVVGLDGTGDQLTQSP 59

Query: 61  FTEQSMRSLLQNLGISTPGGR-LGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSL 119
           FT+QS+ ++L+ LGI  P G  + SKNVAAVMVTA+LPPFA  GS+IDV+++S+GDA SL
Sbjct: 60  FTKQSINNMLEQLGIKVPPGDNIKSKNVAAVMVTASLPPFARQGSKIDVTVSSIGDAKSL 119

Query: 120 RGGILVMTSLLGADGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELP 179
           RGG L+MT L GADG IYAVAQG+V+V G    G  SS    + T G+I NGAI+ERE+P
Sbjct: 120 RGGTLLMTPLKGADGQIYAVAQGNVIVGGFSAAGGGSSVTVNVPTSGRIPNGAIIEREVP 179

Query: 180 KKFKDSADLILQLRNPDFSTAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLT 239
             F D   L LQL+NPDF+TA RIAD IN      F + IA A DSRT++V  P      
Sbjct: 180 SNFGDGNTLNLQLKNPDFTTAQRIADAINR----VFGKGIATAIDSRTIQVRVPKGASRV 235

Query: 240 RLMSEVEMLTVETDTPARVIINERTGTIVIGDNVRISKVVVSYGNLTVQITENEQVVQPN 299
           R ++E+E + +ETDTPA+V+INERTGTIVIG++V+IS V VS+GNLTV ITE   V QP 
Sbjct: 236 RFLAEIENIEIETDTPAKVVINERTGTIVIGEDVKISPVAVSHGNLTVTITEQPNVSQPA 295

Query: 300 AFSSNGSTVTQNNTDLKVSDNKGSFSLIDA-PDLNSLISGMNSIGLKTDGIISILQGIKA 358
            F S G TV    T ++V+  KG   ++     LN+L+  +N+IG     II+ILQ +K+
Sbjct: 296 PF-SGGQTVVVPKTTIEVNQEKGKLFILKGGTTLNNLVRALNAIGATPQDIIAILQALKS 354

Query: 359 AGALQSEIIIQ 369
           AGALQ+E+ I 
Sbjct: 355 AGALQAELEII 365


>gnl|CDD|31954 COG1768, COG1768, Predicted phosphohydrolase [General function
           prediction only].
          Length = 230

 Score = 28.4 bits (63), Expect = 2.9
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 14  GLHEISAQVVSRIKDVVSLQSGRDNQLIGYG--LVVGLQGTGD-SLRSSPFTEQSMRSLL 70
           G H+     +S++ + +       N         +VG++G    S  S P TEQ  +  L
Sbjct: 81  GNHDYWWSSISKLNNALPPILFYLNNGFELLNYAIVGVRGWDSPSFDSEPLTEQDEKIFL 140

Query: 71  QNLG-ISTPGGRLGSKNVAAVMVTANLPPFASPGS 104
           + +G +         K V+  +V  + PPF+  G+
Sbjct: 141 REIGRLRLSADAALPKGVSKFIVMTHYPPFSDDGT 175


>gnl|CDD|113562 pfam04796, RepA_C, Plasmid encoded RepA protein.  Family of
          plasmid encoded proteins involved in plasmid
          replication. The role of RepA in the replication
          process is not clearly understood.
          Length = 161

 Score = 26.9 bits (60), Expect = 9.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 65 SMRSLLQNLGISTPGGRLGS 84
          S    L+ LG+   GGR G+
Sbjct: 31 SFSEFLRRLGLEGSGGRRGT 50


>gnl|CDD|177235 MTH00184, COX1, cytochrome c oxidase subunit I; Provisional.
          Length = 519

 Score = 26.7 bits (59), Expect = 9.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 68 SLLQNLGISTPGGRLGSKNVAAVMVTAN 95
          S+L  L +S PG  LG  ++  V+VTA+
Sbjct: 36 SMLIRLELSAPGSMLGDDHLYNVIVTAH 63


>gnl|CDD|35857 KOG0638, KOG0638, KOG0638, 4-hydroxyphenylpyruvate dioxygenase
           [Amino acid transport and metabolism].
          Length = 381

 Score = 26.8 bits (59), Expect = 9.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 337 SGMNSIGLKTDGIISILQGIKAAG 360
           +G+  I L T+ II  ++G++A G
Sbjct: 261 AGVQHIALNTEDIIEAIRGLRARG 284


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.315    0.133    0.355 

Gapped
Lambda     K      H
   0.267   0.0674    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,899,927
Number of extensions: 201041
Number of successful extensions: 545
Number of sequences better than 10.0: 1
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 13
Length of query: 369
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 274
Effective length of database: 4,210,882
Effective search space: 1153781668
Effective search space used: 1153781668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)