RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring protein [Candidatus Liberibacter asiaticus str. psy62] (369 letters) >gnl|CDD|145332 pfam02119, FlgI, Flagellar P-ring protein. Length = 342 Score = 458 bits (1180), Expect = e-129 Identities = 189/347 (54%), Positives = 238/347 (68%), Gaps = 7/347 (2%) Query: 25 RIKDVVSLQSGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRSLLQNLGISTPGGRLGS 84 RIKD+ S++ RDNQL+GYGLVVGL GTGDSL SPFTEQS+ ++L+ LG++ P + S Sbjct: 1 RIKDIASIEGVRDNQLVGYGLVVGLNGTGDSLTQSPFTEQSLANMLERLGVNIPPNNIKS 60 Query: 85 KNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLRGGILVMTSLLGADGNIYAVAQGSV 144 KNVAAVMVTA LPPFA PG RIDV+++S+GDA SLRGG L+MT L GADG +YAVAQG++ Sbjct: 61 KNVAAVMVTATLPPFAKPGQRIDVTVSSIGDAKSLRGGTLLMTPLKGADGEVYAVAQGNL 120 Query: 145 VVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPKKFKDSADLILQLRNPDFSTAIRIA 204 VV G +G SS + T G+I NGAIVERE+P F L L LRNPDF+TA RIA Sbjct: 121 VVGGFGAEGAGSSVTVNVPTVGRIPNGAIVEREVPFDFGQGDSLTLNLRNPDFTTANRIA 180 Query: 205 DQINSYSLNRFSRPIAEAYDSRTVKVSKPTNI-DLTRLMSEVEMLTVETDTPARVIINER 263 D IN RF +A A D+RT++V P + ++E+E L VE D PA+V+INER Sbjct: 181 DAIN----ARFGPGVARALDARTIEVRAPRDYSQRVSFLAEIENLEVEPDAPAKVVINER 236 Query: 264 TGTIVIGDNVRISKVVVSYGNLTVQITENEQVVQPNAFSSNGSTVTQNNTDLKVSDNKGS 323 TGTIVIG NVRIS V VS+GNLTV ITE QV QPN F S G TV TD+ V + G Sbjct: 237 TGTIVIGQNVRISPVAVSHGNLTVTITETPQVSQPNPF-SGGQTVVVPRTDIDVEEEGGR 295 Query: 324 FSLIDA-PDLNSLISGMNSIGLKTDGIISILQGIKAAGALQSEIIIQ 369 ++ L L+ +N++G +I+ILQ +KAAGAL +E+ + Sbjct: 296 LFVLPPGASLADLVRALNALGATPRDLIAILQALKAAGALHAELEVI 342 >gnl|CDD|31892 COG1706, FlgI, Flagellar basal-body P-ring protein [Cell motility and secretion]. Length = 365 Score = 394 bits (1014), Expect = e-110 Identities = 197/371 (53%), Positives = 251/371 (67%), Gaps = 9/371 (2%) Query: 1 MIFRIAFLIFSLIGLHEISAQVVSRIKDVVSLQSGRDNQLIGYGLVVGLQGTGDSLRSSP 60 M+ I + L+ A RIKD+ S+Q RDNQLIGYGLVVGL GTGD L SP Sbjct: 2 MLKLITLALLLLLTTA--KAAQAERIKDIASIQGVRDNQLIGYGLVVGLDGTGDQLTQSP 59 Query: 61 FTEQSMRSLLQNLGISTPGGR-LGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSL 119 FT+QS+ ++L+ LGI P G + SKNVAAVMVTA+LPPFA GS+IDV+++S+GDA SL Sbjct: 60 FTKQSINNMLEQLGIKVPPGDNIKSKNVAAVMVTASLPPFARQGSKIDVTVSSIGDAKSL 119 Query: 120 RGGILVMTSLLGADGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELP 179 RGG L+MT L GADG IYAVAQG+V+V G G SS + T G+I NGAI+ERE+P Sbjct: 120 RGGTLLMTPLKGADGQIYAVAQGNVIVGGFSAAGGGSSVTVNVPTSGRIPNGAIIEREVP 179 Query: 180 KKFKDSADLILQLRNPDFSTAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLT 239 F D L LQL+NPDF+TA RIAD IN F + IA A DSRT++V P Sbjct: 180 SNFGDGNTLNLQLKNPDFTTAQRIADAINR----VFGKGIATAIDSRTIQVRVPKGASRV 235 Query: 240 RLMSEVEMLTVETDTPARVIINERTGTIVIGDNVRISKVVVSYGNLTVQITENEQVVQPN 299 R ++E+E + +ETDTPA+V+INERTGTIVIG++V+IS V VS+GNLTV ITE V QP Sbjct: 236 RFLAEIENIEIETDTPAKVVINERTGTIVIGEDVKISPVAVSHGNLTVTITEQPNVSQPA 295 Query: 300 AFSSNGSTVTQNNTDLKVSDNKGSFSLIDA-PDLNSLISGMNSIGLKTDGIISILQGIKA 358 F S G TV T ++V+ KG ++ LN+L+ +N+IG II+ILQ +K+ Sbjct: 296 PF-SGGQTVVVPKTTIEVNQEKGKLFILKGGTTLNNLVRALNAIGATPQDIIAILQALKS 354 Query: 359 AGALQSEIIIQ 369 AGALQ+E+ I Sbjct: 355 AGALQAELEII 365 >gnl|CDD|31954 COG1768, COG1768, Predicted phosphohydrolase [General function prediction only]. Length = 230 Score = 28.4 bits (63), Expect = 2.9 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 4/95 (4%) Query: 14 GLHEISAQVVSRIKDVVSLQSGRDNQLIGYG--LVVGLQGTGD-SLRSSPFTEQSMRSLL 70 G H+ +S++ + + N +VG++G S S P TEQ + L Sbjct: 81 GNHDYWWSSISKLNNALPPILFYLNNGFELLNYAIVGVRGWDSPSFDSEPLTEQDEKIFL 140 Query: 71 QNLG-ISTPGGRLGSKNVAAVMVTANLPPFASPGS 104 + +G + K V+ +V + PPF+ G+ Sbjct: 141 REIGRLRLSADAALPKGVSKFIVMTHYPPFSDDGT 175 >gnl|CDD|113562 pfam04796, RepA_C, Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood. Length = 161 Score = 26.9 bits (60), Expect = 9.2 Identities = 8/20 (40%), Positives = 11/20 (55%) Query: 65 SMRSLLQNLGISTPGGRLGS 84 S L+ LG+ GGR G+ Sbjct: 31 SFSEFLRRLGLEGSGGRRGT 50 >gnl|CDD|177235 MTH00184, COX1, cytochrome c oxidase subunit I; Provisional. Length = 519 Score = 26.7 bits (59), Expect = 9.4 Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 68 SLLQNLGISTPGGRLGSKNVAAVMVTAN 95 S+L L +S PG LG ++ V+VTA+ Sbjct: 36 SMLIRLELSAPGSMLGDDHLYNVIVTAH 63 >gnl|CDD|35857 KOG0638, KOG0638, KOG0638, 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]. Length = 381 Score = 26.8 bits (59), Expect = 9.7 Identities = 9/24 (37%), Positives = 16/24 (66%) Query: 337 SGMNSIGLKTDGIISILQGIKAAG 360 +G+ I L T+ II ++G++A G Sbjct: 261 AGVQHIALNTEDIIEAIRGLRARG 284 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.315 0.133 0.355 Gapped Lambda K H 0.267 0.0674 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,899,927 Number of extensions: 201041 Number of successful extensions: 545 Number of sequences better than 10.0: 1 Number of HSP's gapped: 540 Number of HSP's successfully gapped: 13 Length of query: 369 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 274 Effective length of database: 4,210,882 Effective search space: 1153781668 Effective search space used: 1153781668 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 58 (26.2 bits)