RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring protein [Candidatus Liberibacter asiaticus str. psy62] (369 letters) >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (C:359-648) Length = 290 Score = 31.0 bits (70), Expect = 0.28 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 9/48 (18%) Query: 127 TSLLGA---------DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165 +LLG DGN+ + + V F EG++TG Sbjct: 78 KNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 125 >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (D:363-647) Length = 285 Score = 31.0 bits (70), Expect = 0.29 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 9/48 (18%) Query: 127 TSLLGA---------DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165 +LLG DGN+ + + V F EG++TG Sbjct: 74 KNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 121 >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (B:423-484) Length = 62 Score = 27.2 bits (60), Expect = 3.8 Identities = 9/33 (27%), Positives = 14/33 (42%) Query: 133 DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165 DGN+ + + V F EG++TG Sbjct: 29 DGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 61 >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (A:423-484) Length = 62 Score = 27.2 bits (60), Expect = 3.8 Identities = 9/33 (27%), Positives = 14/33 (42%) Query: 133 DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165 DGN+ + + V F EG++TG Sbjct: 29 DGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 61 >2gtt_A Nucleoprotein; protein-RNA complex, viral protein, RNA binding protein; 3.49A {Rabies virus} (A:43-75,A:116-226) Length = 144 Score = 27.3 bits (60), Expect = 3.8 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%) Query: 329 APDLN----SLISGMNSIGLKTDGIISIL 353 APDLN S++SGM++ L D + S L Sbjct: 4 APDLNKAYKSVLSGMSAAKLDPDDVCSYL 32 >2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial virulence factor, transferase/DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D* (A:57-156) Length = 100 Score = 26.7 bits (59), Expect = 5.3 Identities = 9/41 (21%), Positives = 15/41 (36%) Query: 176 RELPKKFKDSADLILQLRNPDFSTAIRIADQINSYSLNRFS 216 REL + A++ Q R + + LNR+ Sbjct: 22 RELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYG 62 >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} (A:361-549) Length = 189 Score = 26.3 bits (58), Expect = 6.4 Identities = 10/33 (30%), Positives = 15/33 (45%) Query: 133 DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165 DGNIY + V ++ + EG+ST Sbjct: 84 DGNIYGIPPTFEGVKEQYIPILKKAKEEGVSTN 116 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.315 0.133 0.355 Gapped Lambda K H 0.267 0.0625 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,425,295 Number of extensions: 102515 Number of successful extensions: 292 Number of sequences better than 10.0: 1 Number of HSP's gapped: 292 Number of HSP's successfully gapped: 13 Length of query: 369 Length of database: 4,956,049 Length adjustment: 90 Effective length of query: 279 Effective length of database: 1,913,599 Effective search space: 533894121 Effective search space used: 533894121 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.2 bits)