RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring
protein [Candidatus Liberibacter asiaticus str. psy62]
         (369 letters)



>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate
           uridyltransferase GlmU, C-terminal domain {Escherichia
           coli [TaxId: 562]}
          Length = 201

 Score = 29.6 bits (65), Expect = 0.48
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

Query: 255 PARVIINERTGTIVIGDNVRISKVVVSYGNLTVQITEN 292
           PAR  +    GT+  G +V I   V+  GN  V +   
Sbjct: 6   PARFDLR---GTLTHGRDVEIDTNVIIEGN--VTLGHR 38


>d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse
           gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 556

 Score = 28.0 bits (61), Expect = 1.2
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 60  PFTEQSMRSLLQNLGISTP 78
           PFT+  +  +++  GI  P
Sbjct: 457 PFTQSEIIQMMKERGIGRP 475


>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus
           [TaxId: 984]}
          Length = 481

 Score = 26.8 bits (58), Expect = 2.8
 Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 3/128 (2%)

Query: 232 KPTNIDLTRLMSEVEMLTVETDTPARVIINERTGTIVIGDNVRISKVVVSYGNLTVQI-T 290
           K   + ++        +T++   P +V         + G+++ +  +    GN  +Q   
Sbjct: 30  KDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWK 89

Query: 291 ENEQVVQPNAFSSNGST--VTQNNTDLKVSDNKGSFSLIDAPDLNSLISGMNSIGLKTDG 348
            +   +     S N  T  V     +   +    S +       +  I   +     T  
Sbjct: 90  SHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFD 149

Query: 349 IISILQGI 356
            +  L   
Sbjct: 150 QVINLNNT 157


>d1o75a3 b.120.1.1 (A:7-206) Tp47 lipoprotein, N-terminal domain
           {Treponema pallidum [TaxId: 160]}
          Length = 200

 Score = 26.7 bits (58), Expect = 3.2
 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 5/132 (3%)

Query: 198 STAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTRLMSEVEMLTVETDTPAR 257
                + +++ S      SR   +        V+K      +      +           
Sbjct: 63  YAVEVLGEKVLSKQETEDSRGRKKWEYETDPSVTKMVRASASFQDLGEDGEIKFEAVEGA 122

Query: 258 VIINERTGTI-VIGDNVRISKVVVSYGNLTVQI---TENEQVVQPNAFSSNGSTVTQNNT 313
           V + +R  +  V  +  +I+ V V +G   V +    E + + +        S VT+N  
Sbjct: 123 VALADRASSFMVDSEEYKITNVKV-HGMKFVPVAVPHELKGIAKEKFHFVEDSRVTENTN 181

Query: 314 DLKVSDNKGSFS 325
            LK    + SFS
Sbjct: 182 GLKTMLTEDSFS 193


>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase
           {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
          Length = 160

 Score = 25.0 bits (54), Expect = 9.7
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 3/100 (3%)

Query: 129 LLGADGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPKKFKDSADL 188
           +  A  N+ A+  G     G+ +  +++  M G+     +      +           DL
Sbjct: 8   VASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDL 67

Query: 189 IL---QLRNPDFSTAIRIADQINSYSLNRFSRPIAEAYDS 225
            L      + +F+   ++   +    + R S+ +AE   +
Sbjct: 68  QLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVAT 107


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.355 

Gapped
Lambda     K      H
   0.267   0.0427    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,206,814
Number of extensions: 53456
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 12
Length of query: 369
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,213,086
Effective search space: 342090252
Effective search space used: 342090252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)