BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring protein [Candidatus Liberibacter asiaticus str. psy62] (369 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 369 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/369 (100%), Positives = 369/369 (100%) Query: 1 MIFRIAFLIFSLIGLHEISAQVVSRIKDVVSLQSGRDNQLIGYGLVVGLQGTGDSLRSSP 60 MIFRIAFLIFSLIGLHEISAQVVSRIKDVVSLQSGRDNQLIGYGLVVGLQGTGDSLRSSP Sbjct: 1 MIFRIAFLIFSLIGLHEISAQVVSRIKDVVSLQSGRDNQLIGYGLVVGLQGTGDSLRSSP 60 Query: 61 FTEQSMRSLLQNLGISTPGGRLGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLR 120 FTEQSMRSLLQNLGISTPGGRLGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLR Sbjct: 61 FTEQSMRSLLQNLGISTPGGRLGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLR 120 Query: 121 GGILVMTSLLGADGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPK 180 GGILVMTSLLGADGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPK Sbjct: 121 GGILVMTSLLGADGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPK 180 Query: 181 KFKDSADLILQLRNPDFSTAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTR 240 KFKDSADLILQLRNPDFSTAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTR Sbjct: 181 KFKDSADLILQLRNPDFSTAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTR 240 Query: 241 LMSEVEMLTVETDTPARVIINERTGTIVIGDNVRISKVVVSYGNLTVQITENEQVVQPNA 300 LMSEVEMLTVETDTPARVIINERTGTIVIGDNVRISKVVVSYGNLTVQITENEQVVQPNA Sbjct: 241 LMSEVEMLTVETDTPARVIINERTGTIVIGDNVRISKVVVSYGNLTVQITENEQVVQPNA 300 Query: 301 FSSNGSTVTQNNTDLKVSDNKGSFSLIDAPDLNSLISGMNSIGLKTDGIISILQGIKAAG 360 FSSNGSTVTQNNTDLKVSDNKGSFSLIDAPDLNSLISGMNSIGLKTDGIISILQGIKAAG Sbjct: 301 FSSNGSTVTQNNTDLKVSDNKGSFSLIDAPDLNSLISGMNSIGLKTDGIISILQGIKAAG 360 Query: 361 ALQSEIIIQ 369 ALQSEIIIQ Sbjct: 361 ALQSEIIIQ 369 >gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 1386 Score = 30.0 bits (66), Expect = 0.062, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 26/51 (50%) Query: 79 GGRLGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLRGGILVMTSL 129 GR G+K + + ++ PF G+ +D+ +N LG S + G + T L Sbjct: 1091 AGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 >gi|254780591|ref|YP_003065004.1| aminomethyltransferase protein (glycine cleavage) [Candidatus Liberibacter asiaticus str. psy62] Length = 273 Score = 23.9 bits (50), Expect = 4.5, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 14/74 (18%) Query: 54 DSLRSSPFTEQSMRSLLQNLGISTPGGRLGSKNVAAV----------MV---TANLPPFA 100 D L S+ F ++ LL + + T G +G + V+ + M+ T +LPP Sbjct: 159 DFLPSTIFPHDALMDLLNGISL-TKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSG 217 Query: 101 SPGSRIDVSINSLG 114 SP D+ I +LG Sbjct: 218 SPILTDDIEIGTLG 231 >gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 23.5 bits (49), Expect = 5.9, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 47 VGLQGTGDSLRSSPFTEQSMRSLLQ-NLGISTPGGRLGSKNVA 88 +GL G G++ + + EQS+ S +Q N+ P G L SK A Sbjct: 177 LGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFA 219 >gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 23.5 bits (49), Expect = 6.7, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 19/30 (63%) Query: 29 VVSLQSGRDNQLIGYGLVVGLQGTGDSLRS 58 ++ + SGRD ++IG G++ LQ LRS Sbjct: 41 ILKVLSGRDVEIIGEGVIEVLQDGFGFLRS 70 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.315 0.133 0.355 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 215,753 Number of Sequences: 1233 Number of extensions: 8877 Number of successful extensions: 33 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 11 length of query: 369 length of database: 328,796 effective HSP length: 75 effective length of query: 294 effective length of database: 236,321 effective search space: 69478374 effective search space used: 69478374 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 39 (19.6 bits)