HHsearch alignment for GI: 254780377 and conserved domain: COG1261
>COG1261 FlgA Flagellar basal body P-ring biosynthesis protein [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=4.6e-35 Score=212.94 Aligned_cols=135 Identities=30% Similarity=0.524 Sum_probs=128.5
Q ss_pred ECEEEEEEEEEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf 02077886788877520048996618743799996820178421158677303012102270000156640232100379
Q gi|254780377|r 17 LDSLFASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRG 96 (152)
Q Consensus 17 ~~~~~~~~~~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~~~V~~G 96 (152)
T Consensus 86 ~~~~~v~~~~~~~va~r~I~~Ge~i~a~dv~~~~~~~~~l~~~~~~d~~~vvg~vskr~l~pg~~i~~~~lr~~~lV~rg 165 (220)
T COG1261 86 FVRVAVQAPGEVVVAARTIYRGEKISAADVKLKRGDLDALPPGYVLDPDEVVGKVSKRTLLPGQPILASMLRQAWLVKRG 165 (220)
T ss_pred CCEEEECCCCEEEEEECCCCCCCCCCHHHHEEEECCCCCCCCCCCCCHHHHHCHHHHCCCCCCCEECHHHHCCCCEEECC
T ss_conf 30024416643999932348877368657123540254579855389899736775402589989558881461057539
Q ss_pred CEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEECCEEEEEE
Q ss_conf 8799999769789999999924488897799998899888999997299899997
Q gi|254780377|r 97 AKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVDTGTVRVVV 151 (152)
Q Consensus 97 ~~V~i~~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v~g~V~~~~~V~V~~ 151 (152)
T Consensus 166 ~~V~~v~~~ggi~i~~~g~aL~nga~Ge~IrVrn~~SgkIvsg~V~~~G~v~V~~ 220 (220)
T COG1261 166 QIVTVVAEGGGISITAEGKALENGAVGEVIRVRNVSSGKIVSGTVDGDGTVQVLL 220 (220)
T ss_pred CEEEEEEECCCEEEEEEEEECCCCCCCCEEEEECCCCCCEEEEEECCCCEEEECC
T ss_conf 9889999279779998114856766665689862778867999982597388459