HHsearch alignment for GI: 254780377 and conserved domain: TIGR03177

>TIGR03177 pilus_cpaB Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.

Probab=99.16  E-value=6.7e-11  Score=79.58  Aligned_cols=104  Identities=20%  Similarity=0.206  Sum_probs=80.3

Q ss_pred             EEEEEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf             86788877520048996618743799996820178421158677303012102270000156640232100379879999
Q gi|254780377|r   23 SVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRII  102 (152)
Q Consensus        23 ~~~~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~  102 (152)
T Consensus        33 ~~~v~VvVA~~di~~G~~l~~~~l~~~~~P~~~~p~ga~~~~~~~~Gr~~~~~i~~Gepi~~~~l~~~g---~~~~La~~  109 (261)
T TIGR03177        33 VPTVPVVVAARDLPAGTPITAEDLRWVSWPEASVPAGAFDDIAQLVGRIVRRPLEAGEPILESKLVPPG---ASGGLAAL  109 (261)
T ss_pred             CCCEEEEEECCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCCHHHCCCCC---CCCCHHHH
T ss_conf             884249998565798889588996999776544897511597786684054232689831386654688---87545653


Q ss_pred             EE--CCCEEEEEEEEECCCCCC--CCEEEEE
Q ss_conf             97--697899999999244888--9779999
Q gi|254780377|r  103 LT--QGNMTISTAGIALSDASI--GDVIAVK  129 (152)
Q Consensus       103 ~~--~g~~~i~~~g~Al~~g~~--Gd~IrV~  129 (152)
T Consensus       110 l~pG~RAvti~Vd~~~gv~Gfi~PGD~VDVl  140 (261)
T TIGR03177       110 LPPGMRAVAIRVDEVTGVGGFILPGDRVDVL  140 (261)
T ss_pred             CCCCCEEEEEEECCCCCCCCCCCCCCEEEEE
T ss_conf             5899578999865433556646899978999