HHSEARCH alignment of GI: 254780377 and SCOP domain: d1opsa_

Alignment

Probab=98.07  E-value=1.4e-06  Score=53.25  Aligned_cols=60  Identities=12%  Similarity=0.133  Sum_probs=50.4

Q ss_pred             EEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCC
Q ss_conf             877520048996618743799996820178421158677303012102270000156640232
Q gi|254780377|r   28 AVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP   90 (152)
Q Consensus        28 vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~   90 (152)
                      -+||+++|++|++|+++|+..++..-..++..   +.++++|+.++++|..|++|..+|++..
T Consensus         3 SiVA~~dI~~G~~lt~~~l~~Krp~p~GI~p~---~~~~iIGKk~kkdi~~d~~L~~d~ik~~   62 (64)
T d1opsa_           3 SVVATQLIPMNTALTPAMMEGKVTNPIGIPFA---EMSQLVGKQVNTPVAKGQTLMPNMVKTY   62 (64)
T ss_dssp             EEEESSCBCTTCBCCGGGEEEECCSSCCSBGG---GGGGTTTCBBSSCBCTTCBCCGGGBTTT
T ss_pred             CEEECCCCCCCCCCCHHHEEEEECCCCCCCHH---HHHHHCCHHHHCCCCCCCCCCHHHHHCC
T ss_conf             67867732898892578857871678870988---9999748575233069885189994122

SCOP domain information

class: All beta proteins
fold: beta-clip
superfamily: AFP III-like domain
family: AFP III-like domain
domain: Type III antifreeze protein, AFP III
species: Ocean pout (Macrozoarces americanus), different isoforms [TaxId: 8199]