HHSEARCH alignment of GI: 254780377 and SCOP domain: d1vlia1

Alignment

Probab=97.73  E-value=1.2e-05  Score=48.02  Aligned_cols=60  Identities=13%  Similarity=0.209  Sum_probs=47.2

Q ss_pred             EEEEEEEECCCCCCCCHHHEEEEEEEH--HHCCCCCCCCHHHHH-CEEEECCCCCCCCCCHHHCCC
Q ss_conf             887752004899661874379999682--017842115867730-301210227000015664023
Q gi|254780377|r   27 HAVVPSVVINAGEVLNESRLKEMQVTN--SNIRGNYAHSIKDVV-GLVTRRVLLPDHVIPLSVLHR   89 (152)
Q Consensus        27 ~vvVa~r~I~~G~~I~~~Dl~~~~~~~--~~~~~~~~~~~~~~i-G~~a~r~i~~G~~i~~~~l~~   89 (152)
                      .-++|+++|++|++|+.+|+...+.-.  ..++   -...++++ |+.+++++.+|++|..+++-.
T Consensus         8 RSi~a~kdi~kG~~it~~di~~~RPg~~~~Gi~---p~~~~~ii~Gkk~~~~i~~g~~i~~~di~~   70 (72)
T d1vlia1           8 RGIFTTAPIQKGEAFSEDNIAVLRPGQKPQGLH---PRFFELLTSGVRAVRDIPADTGIVWDDILL   70 (72)
T ss_dssp             CEEEESSCBCTTCBCCTTTEEEECCTTSCCCBC---GGGHHHHHTTCBCSSCBCTTCBCCGGGTSC
T ss_pred             EEEEEECCCCCCCCCCHHHEEEECCCCCCCCCC---HHHHHHHHCCCEECCCCCCCCCCCHHHCCC
T ss_conf             538891422888991678867877888888859---899999767948846338969369999020

SCOP domain information

class: All beta proteins
fold: beta-clip
superfamily: AFP III-like domain
family: AFP III-like domain
domain: Spore coat polysaccharide biosynthesis protein SpsE, C-terminal domain
species: Bacillus subtilis [TaxId: 1423]