RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring
biosynthesis protein FlgA [Candidatus Liberibacter asiaticus str.
psy62]
(152 letters)
>gnl|CDD|31453 COG1261, FlgA, Flagellar basal body P-ring biosynthesis protein
[Cell motility and secretion / Posttranslational
modification, protein turnover, chaperones].
Length = 220
Score = 101 bits (252), Expect = 1e-22
Identities = 41/129 (31%), Positives = 71/129 (55%)
Query: 21 FASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDH 80
G VV + I GE ++ + +K + + Y +VVG V++R LLP
Sbjct: 90 AVQAPGEVVVAARTIYRGEKISAADVKLKRGDLDALPPGYVLDPDEVVGKVSKRTLLPGQ 149
Query: 81 VIPLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGS 140
I S+L + +++ RG V ++ G ++I+ G AL + ++G+VI V+N+ +G +VSG+
Sbjct: 150 PILASMLRQAWLVKRGQIVTVVAEGGGISITAEGKALENGAVGEVIRVRNVSSGKIVSGT 209
Query: 141 VVDTGTVRV 149
V GTV+V
Sbjct: 210 VDGDGTVQV 218
>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein
Serine/Threonine Kinase, STK10 or Lymphocyte-oriented
kinase. Serine/threonine kinases (STKs), STK10
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
STK10 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Other names for STK10 include
lymphocyte-oriented kinase (LOK) and Xenopus polo-like
kinase kinase 1 (xPlkk1). STK10 is highly expressed in
lymphocytes and is responsible in regulating leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. It plays a role in regulating the CD28
responsive element in T cells, and may also function as
a regulator of polo-like kinase 1 (Plk1), a protein
which is overexpressed in multiple tumor types.
Length = 292
Score = 28.1 bits (62), Expect = 1.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 117 LSDASIGDVIAVKNIDTGVMVSGSVVDT 144
L D + G V KN +TG + + V++T
Sbjct: 20 LGDGAFGKVYKAKNKETGALAAAKVIET 47
>gnl|CDD|107378 cd06383, PBP1_iGluR_AMPA_Like, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of uncharacterized AMPA-like receptors.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of uncharacterized AMPA-like
receptors. While this N-terminal domain belongs to the
periplasmic-binding fold type I superfamily, the
glutamate-binding domain of the iGluR is structurally
homologous to the periplasmic-binding fold type II. The
LIVBP-like domain of iGluRs is thought to play a role in
the initial assembly of iGluR subunits, but it is not
well understood how this domain is arranged and
functions in intact iGluR. AMPA receptors consist of
four types of subunits (GluR1, GluR2, GluR3, and GluR4)
which combine to form a tetramer and play an important
roles in mediating the rapid excitatory synaptic
current.
Length = 368
Score = 27.8 bits (62), Expect = 1.3
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 27 HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSV 86
H + I RL+ + + N I G+ I+ V+ D +
Sbjct: 161 HVITIINSIIDEVREQIKRLRNLDIKNIFILGSTEEIIRYVL----------DQALAEGF 210
Query: 87 LHRPY 91
+ R Y
Sbjct: 211 MGRKY 215
>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine
Kinase, Ste20-like kinase. Serine/threonine kinases
(STKs), Ste20-like kinase (SLK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. SLK promotes
apoptosis through apoptosis signal-regulating kinase 1
(ASK1) and the mitogen-activated protein kinase (MAPK)
p38. It acts as a MAPK kinase kinase (MAPKKK) by
phosphorylating ASK1, resulting in the phosphorylation
of p38. SLK also plays a role in mediating actin
reorganization. It is part of a microtubule-associated
complex that is targeted at adhesion sites, and is
required in focal adhesion turnover and in regulating
cell migration.
Length = 282
Score = 27.7 bits (61), Expect = 1.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 117 LSDASIGDVIAVKNIDTGVMVSGSVVDT 144
L D + G V +N +TGV+ + V+DT
Sbjct: 13 LGDGAFGKVYKAQNKETGVLAAAKVIDT 40
>gnl|CDD|146199 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.
Length = 234
Score = 26.9 bits (60), Expect = 2.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 10 FSLYVLSLDSLFASVIGHAVVPSVVIN 36
S +L+L +L A V H V +V+N
Sbjct: 3 LSTILLALLALAALVAAHGHVTKIVVN 29
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.323 0.138 0.379
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,666,792
Number of extensions: 81258
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 17
Length of query: 152
Length of database: 6,263,737
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,426,972
Effective search space: 296607124
Effective search space used: 296607124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)