RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring
biosynthesis protein FlgA [Candidatus Liberibacter asiaticus str.
psy62]
         (152 letters)



>gnl|CDD|180347 PRK06005, flgA, flagellar basal body P-ring biosynthesis protein
           FlgA; Reviewed.
          Length = 160

 Score =  122 bits (309), Expect = 3e-29
 Identities = 55/126 (43%), Positives = 81/126 (64%), Gaps = 1/126 (0%)

Query: 28  AVVPSVVINAGEVLNESRLKEMQ-VTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSV 86
            VVPS  I  GE +++S L E+Q VTN      Y  SI  VVG V +R LLP   IP+S 
Sbjct: 35  FVVPSTTIYPGETISDSMLLEVQFVTNPPAAAQYVLSIDQVVGKVAKRTLLPGRPIPVSA 94

Query: 87  LHRPYVISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVDTGT 146
           L  P +++RG+ V+++ + G +TI+ AG  L   + GD+I V+N+D+GV+VSG+V+  GT
Sbjct: 95  LREPSLVTRGSPVKLVFSAGGLTITAAGTPLQSGAAGDLIRVRNVDSGVIVSGTVLADGT 154

Query: 147 VRVVVK 152
           ++V  K
Sbjct: 155 IQVGAK 160


>gnl|CDD|163171 TIGR03170, flgA_cterm, flagella basal body P-ring formation protein
           FlgA.  This model describes a conserved C-terminal
           region of the flagellar basal body P-ring formation
           protein FlgA. This sequence region contains a SAF
           domain, now described by Pfam model pfam08666.
          Length = 122

 Score =  102 bits (257), Expect = 3e-23
 Identities = 39/122 (31%), Positives = 65/122 (53%)

Query: 28  AVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVL 87
            VV    +  GEV++   LK  +   + + G       +VVG V +R L     +  ++L
Sbjct: 1   VVVAKRPLKRGEVISPEDLKLERGDLARLPGGVLTDPDEVVGKVAKRPLRAGQPLTANML 60

Query: 88  HRPYVISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVDTGTV 147
             P+++ RG  V +I   G ++++T G AL D ++GD I V+N+ +G ++SG V   GTV
Sbjct: 61  RPPWLVKRGDTVTVIARGGGLSVTTEGKALEDGAVGDQIRVRNLSSGKIISGIVTGPGTV 120

Query: 148 RV 149
            V
Sbjct: 121 EV 122


>gnl|CDD|180794 PRK07018, flgA, flagellar basal body P-ring biosynthesis protein
           FlgA; Reviewed.
          Length = 235

 Score = 83.8 bits (208), Expect = 2e-17
 Identities = 38/127 (29%), Positives = 63/127 (49%)

Query: 23  SVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVI 82
            V G  VV +  +  GE L+ S +   +     +          +VG V++R + P   I
Sbjct: 107 QVTGPYVVAARPLARGEKLSASDVTLREGDLDTLPPGVFTDPDQLVGAVSKRRIAPGQPI 166

Query: 83  PLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVV 142
            L++L + +V+ +G  V II      ++ T G AL+D ++G  I V+N+ +G +VSG V 
Sbjct: 167 RLNMLRQAWVVCKGQTVSIIARGDGFSVKTEGEALNDGAVGQQIRVRNMASGQVVSGIVT 226

Query: 143 DTGTVRV 149
             G V V
Sbjct: 227 GDGEVEV 233


>gnl|CDD|180704 PRK06804, flgA, flagellar basal body P-ring biosynthesis protein
           FlgA; Reviewed.
          Length = 261

 Score = 66.1 bits (161), Expect = 3e-12
 Identities = 31/122 (25%), Positives = 59/122 (48%)

Query: 29  VVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLH 88
            V    +  G  +    ++  +   S ++G Y     + +GL  +R +     +  S L 
Sbjct: 139 WVAKQTLERGRKVQADDIELKKKNISGVQGGYITDPDEAIGLTIKRRIRQLQAVIPSQLE 198

Query: 89  RPYVISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVDTGTVR 148
           +P ++ RG  V +I  Q  +   T GIA  +   G++I VKN+ +G +V+ +V  +G VR
Sbjct: 199 QPVLVERGQHVLMIAAQDGIEAQTLGIAQKNGRKGELIKVKNLSSGRVVTATVDGSGRVR 258

Query: 149 VV 150
           ++
Sbjct: 259 ML 260


>gnl|CDD|183744 PRK12786, flgA, flagellar basal body P-ring biosynthesis protein
           FlgA; Reviewed.
          Length = 338

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 27  HAVVPSVV----INAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVI 82
           +  V + V    +  GEV+  S +   +   + + G+   S +D+VG+  RR L     +
Sbjct: 189 YETVEAPVLARAVGRGEVIKSSDVVWERRPKARVSGDDIASREDLVGMQARRALRAGQPL 248

Query: 83  PLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVV 142
             + L +P ++ RG  V +I     + ++  G AL D + GDV+ V N+ +   V+G+V 
Sbjct: 249 RGADLAKPDLVQRGQLVTLIYQTPGIYLTARGKALEDGAEGDVVRVLNLQSKRTVTGTVT 308

Query: 143 DTGTVRV 149
             G V V
Sbjct: 309 GRGQVSV 315


>gnl|CDD|183626 PRK12618, flgA, flagellar basal body P-ring biosynthesis protein
           FlgA; Reviewed.
          Length = 141

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 8/143 (5%)

Query: 7   LLFFSLYVLSLDSLFASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKD 66
           L+   L +L      A      VV +  I A  V+    L    +   +  G        
Sbjct: 4   LVLLLLLLLLAQPAAAET----VVAARTIRALTVIGAEDL---ALKPGDTPGALT-DPAQ 55

Query: 67  VVGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDASIGDVI 126
            +G   R  L     I  + L  P ++ R   V +    G + I T G ALS   +GD I
Sbjct: 56  AIGQEARVTLYAGRPIRAADLGPPAIVDRNQLVPLAYRLGGLEIRTEGRALSRGGVGDEI 115

Query: 127 AVKNIDTGVMVSGSVVDTGTVRV 149
            V N+ +   VSG +   G+V V
Sbjct: 116 RVMNLSSRTTVSGRIAADGSVIV 138


>gnl|CDD|183625 PRK12617, flgA, flagellar basal body P-ring biosynthesis protein
           FlgA; Reviewed.
          Length = 214

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 31/115 (26%), Positives = 55/115 (47%)

Query: 35  INAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVIS 94
           I AGE ++ + +   +   + I G         VG   RR+L    ++  + L    ++ 
Sbjct: 98  ITAGETISLADISIEKRDAARIVGAVLADPVAAVGKTARRILPAGSLLSANDLVSQRLVR 157

Query: 95  RGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVDTGTVRV 149
           RG  V ++   G + +  +G ALSDA   + ++V+N  +  +V G V  +GTV V
Sbjct: 158 RGDTVPLVSRNGGLEVRMSGRALSDAGENERVSVENSSSRRVVQGIVEASGTVVV 212


>gnl|CDD|181454 PRK08515, flgA, flagellar basal body P-ring biosynthesis protein
           FlgA; Reviewed.
          Length = 222

 Score = 33.4 bits (77), Expect = 0.027
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 92  VISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVDTGTV 147
           ++ +   +  +L +G ++I  +  AL D ++GD+I  KN    ++    V+     
Sbjct: 165 LVRKNDIINGVLKEGGVSIEISLKALQDGNLGDIIQAKNKSNKIL-KAKVLSKNKA 219


>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
          Length = 372

 Score = 27.3 bits (60), Expect = 1.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 91  YVISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNID 132
           YV++   K  +   QGN  I    I+L+ A +G  I V  ID
Sbjct: 254 YVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTID 295


>gnl|CDD|129091 smart00858, SAF, This domain family includes a range of different
          proteins. Such as antifreeze proteins and flagellar
          FlgA proteins, and CpaB pilus proteins. 
          Length = 64

 Score = 26.8 bits (60), Expect = 2.4
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 29 VVPSVVINAGEVLNESRLKEMQVTNSNIRGN-YAHSIKDVVGLVTRRVLLPDHVIPLSVL 87
          VV +  + AGEV+    ++   V   ++ G         V+G V RR +     I  S L
Sbjct: 4  VVAARDLPAGEVITAEDVRLGHVALRDLPGGGGLTPYGQVIGKVARRDIAAGEPITASDL 63


>gnl|CDD|177380 PHA02545, 45, sliding clamp; Provisional.
          Length = 223

 Score = 26.5 bits (59), Expect = 2.7
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 101 IILTQGN--MTISTAGIALSDASIGDVI 126
           I+L  GN  MT S  G+  ++A+I D  
Sbjct: 21  IVLKPGNFIMTKSVNGVIYAEATIEDEF 48


>gnl|CDD|185212 PRK15312, PRK15312, antimicrobial resistance protein Mig-14;
           Provisional.
          Length = 298

 Score = 26.3 bits (58), Expect = 3.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 74  RVLLPDHVIPLSVLHRPYVIS 94
           R  LPD    LS LH+P + +
Sbjct: 97  RCFLPDRTNRLSALHQPQIRN 117


>gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional.
          Length = 470

 Score = 26.6 bits (59), Expect = 3.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 101 IILTQGNMTISTAGIALSDA--SIGDVIA-----VKNIDTGVMVSGSVVDTGT 146
           ++L++G +      IA +D    +G  +A      +  D  VMVSG++V +GT
Sbjct: 409 LVLSKGVVPQLVKEIASTDDFYRLGKELALQSGLAQKGDVVVMVSGALVPSGT 461


>gnl|CDD|182245 PRK10110, PRK10110, bifunctional PTS system maltose and
           glucose-specific transporter subunits IICB; Provisional.
          Length = 530

 Score = 26.6 bits (59), Expect = 3.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 103 LTQGNMTISTAGIALSDASIGDVIAVKNIDTGVM 136
           LT   +  +T    L   +I  ++ +++IDTG++
Sbjct: 116 LTNKGILPTTDAAVLKANNIQSILGIQSIDTGIL 149


>gnl|CDD|161797 TIGR00275, TIGR00275, flavoprotein, HI0933 family.  The model when
           searched with a partial length search brings in proteins
           with a dinucleotide-binding motif (Rossman fold) over
           the initial 40 residues of the model, including
           oxidoreductases and dehydrogenases. Partially
           characterized members include an FAD-binding protein
           from Bacillus cereus and flavoprotein HI0933 from
           Haemophilus influenzae.
          Length = 400

 Score = 25.6 bits (57), Expect = 5.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 21  FASVIGHAVVPSVVINAGEVLNESRLKEMQ 50
            A  +GH +VP V       L+ES LKE+ 
Sbjct: 173 IAESLGHTIVPPVPALVPLTLDESFLKELS 202


>gnl|CDD|130990 TIGR01935, NOT-MenG, RraA famliy.  This model was initially
           classified as a "hypothetical equivalog" expressing the
           tentative hypothesis that all members might have the
           same function as the E. coli enzyme. Considering the
           second clade of enterobacterial sequences within this
           family, that appears to be less tenable. The function of
           these sequences outside of the narrow RraA equivalog
           model (TIGR02998) remains obscure. All of these were
           initially annotated as MenG, AKA S-adenosylmethionine:
           2-demethylmenaquinone methyltransferase (EC 2.1.-.-).
           See the references characterizing this as a case of
           transitive annotation error in the case of the E. coli
           protein.
          Length = 150

 Score = 25.4 bits (56), Expect = 6.9
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 97  AKVRIILTQ---GNMTISTAGIALSDASIGDVIAVKNIDT---GVMVSGSVVDT 144
           + VR +L Q   G + +   G +L  A +GD +AV   +    GV+V+G V D 
Sbjct: 42  SLVREVLEQPGAGRVLVVDGGGSLRCALLGDNLAVLAEENGWEGVIVNGCVRDV 95


>gnl|CDD|185083 PRK15129, PRK15129, L-Ala-D/L-Glu epimerase; Provisional.
          Length = 321

 Score = 25.1 bits (55), Expect = 8.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)

Query: 87 LHRPYVISRGAK 98
          LH P+VI+RG++
Sbjct: 13 LHTPFVIARGSR 24


>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
           Provisional.
          Length = 459

 Score = 24.7 bits (54), Expect = 9.2
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 114 GIALSDASIGDVIAVKNIDTGVMVSGSVVDTGTVRV 149
            I   D  IG   A +     V+V+G++ +  T+R+
Sbjct: 392 AIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRI 427


>gnl|CDD|183553 PRK12487, PRK12487, ribonuclease activity regulator protein RraA;
           Reviewed.
          Length = 163

 Score = 24.9 bits (55), Expect = 9.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 98  KVRIILTQ---GNMTISTAGIALSDASIGDVIA---VKNIDTGVMVSGSVVDTGTVR 148
           KV+ +L Q   G + +   G +   A +GD IA   + N   G++++G V D G + 
Sbjct: 47  KVKEVLAQDGKGKVLVVDGGGSCRRALLGDQIAQSALDNGWEGIVINGCVRDVGALS 103


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.138    0.379 

Gapped
Lambda     K      H
   0.267   0.0738    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,382,921
Number of extensions: 142874
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 30
Length of query: 152
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,157,793
Effective search space: 278572131
Effective search space used: 278572131
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)