RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring
biosynthesis protein FlgA [Candidatus Liberibacter asiaticus str.
psy62]
         (152 letters)



>3frn_A Flagellar protein FLGA; structural genomics, periplasmic,
           PSI-2, protein structure initiative; 2.05A {Thermotoga
           maritima} (A:208-278)
          Length = 71

 Score = 61.7 bits (150), Expect = 4e-11
 Identities = 11/59 (18%), Positives = 28/59 (47%)

Query: 92  VISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVDTGTVRVV 150
            + +G  V   +  G++ ++T    L +  +G+ +   N+++   V G V     +R++
Sbjct: 2   DVVKGQVVPAYVDMGSIKVTTFVEVLENGYLGETVRAMNVESRKYVFGRVERGPVLRIL 60


>3frn_A Flagellar protein FLGA; structural genomics, periplasmic,
           PSI-2, protein structure initiative; 2.05A {Thermotoga
           maritima} (A:1-207)
          Length = 207

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 17/69 (24%), Positives = 30/69 (43%)

Query: 22  ASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHV 81
                + VV    IN G+V+ E  ++  +     I G     + +VVG ++RR L    V
Sbjct: 139 LRKERNVVVLKRNINVGDVIKEEDVRLEKRNVFEIYGEPFFDVSEVVGKISRRYLKEGTV 198

Query: 82  IPLSVLHRP 90
           +   ++  P
Sbjct: 199 LTADMVKDP 207


>2vtc_A CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 1.6A
          {Hypocrea jecorina} (A:)
          Length = 249

 Score = 28.4 bits (63), Expect = 0.47
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 9  FFSLYVLSLDSLFASVIGHAVVPSVVIN 36
               + +L  L  SV+GH  V +  IN
Sbjct: 2  KSCAILAALGCLAGSVLGHGQVQNFTIN 29


>1qqp_1 FMDV, protein (genome polyprotein); heparan sulphate,
          virus-receptor interactions/protein-carbohydrate
          interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth
          disease virus} (1:)
          Length = 213

 Score = 24.6 bits (53), Expect = 7.1
 Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 2/35 (5%)

Query: 28 AVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAH 62
            V + V N G      R +   V  S I   +  
Sbjct: 9  DPVTTTVENYGGETQIQRRQHTDV--SFIMDRFVK 41


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.138    0.379 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,042,868
Number of extensions: 40363
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 11
Length of query: 152
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 71
Effective length of database: 2,217,844
Effective search space: 157466924
Effective search space used: 157466924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)