RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring
biosynthesis protein FlgA [Candidatus Liberibacter asiaticus str.
psy62]
         (152 letters)



>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase
           PpnK {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 249

 Score = 27.8 bits (61), Expect = 0.38
 Identities = 12/62 (19%), Positives = 20/62 (32%)

Query: 49  MQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNM 108
             V        YA S    V        +   + P     +PYV+S   K+ +I  +  +
Sbjct: 147 FIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVVSMERKIEVIAEKAIV 206

Query: 109 TI 110
             
Sbjct: 207 VA 208


>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
           Aeropyrum pernix [TaxId: 56636]}
          Length = 234

 Score = 26.1 bits (57), Expect = 1.4
 Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 16/122 (13%)

Query: 21  FASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIK------------DVV 68
           F       + P   +    +  +  +K   V      G     +K              +
Sbjct: 50  FRCA---VLTPVYTVKISGLAEKLGVKLCSVIGFP-LGQAPLEVKLVEAQTVLEAGATEL 105

Query: 69  GLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAV 128
            +V    L P+ V            S GA V++IL        T  + +  +       V
Sbjct: 106 DVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIV 165

Query: 129 KN 130
           K 
Sbjct: 166 KT 167


>d1w79a1 e.3.1.3 (A:1-467) D-alanyl-D-alanine carboxypeptidase Dac
           {Actinomadura sp. [TaxId: 1989]}
          Length = 467

 Score = 24.9 bits (53), Expect = 3.1
 Identities = 6/46 (13%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 97  AKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVV 142
             +  IL    +  + +G+ + D + G+ +  ++     ++  S +
Sbjct: 7   EDIDAILEDPALEGAVSGVVVVDTATGEELYSRDGGEQ-LLPASNM 51


>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl
           transferase subunit beta, AccD {Escherichia coli [TaxId:
           562]}
          Length = 263

 Score = 24.8 bits (53), Expect = 3.1
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 4/85 (4%)

Query: 62  HSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDAS 121
                  G   +  L+    +  +      +  RG     +LT      +  G++ S A 
Sbjct: 135 ICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDP----TMGGVSASFAM 190

Query: 122 IGDVIAVKNIDTGVMVSGSVVDTGT 146
           +GD+   +           V++   
Sbjct: 191 LGDLNIAEPKALIGFAGPRVIEQTV 215


>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 471

 Score = 24.7 bits (52), Expect = 3.7
 Identities = 8/44 (18%), Positives = 12/44 (27%)

Query: 80  HVIPLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDASIG 123
           H+IPL    +  V   G  V  ++             L      
Sbjct: 14  HLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSS 57


>d1w5da1 e.3.1.3 (A:5-462) Penicillin-binding protein DacC {Bacillus
           subtilis [TaxId: 1423]}
          Length = 458

 Score = 24.5 bits (52), Expect = 4.7
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 100 RIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVV 142
           +I+     +  + AGI +  A  G V+   + DT  M   S +
Sbjct: 9   KILADHPALEGAMAGITVRSAETGAVLYEHSGDTR-MRPASSL 50


>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 333

 Score = 24.3 bits (52), Expect = 5.4
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 86  VLHRPYVISRGAKVRIILTQGNMT 109
           V      I +G  V +++   NM 
Sbjct: 272 VFKGAVKIRKGQAVTLMMDATNMP 295


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.379 

Gapped
Lambda     K      H
   0.267   0.0389    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 514,079
Number of extensions: 21074
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 8
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.6 bits)