HHsearch alignment for GI: 254780379 and conserved domain: PRK00732
>PRK00732 fliE flagellar hook-basal body protein FliE; Reviewed.
Probab=99.95 E-value=1.6e-27 Score=182.87 Aligned_cols=103 Identities=20% Similarity=0.349 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 64676528999966545421101367777778888665999999999999999999999999998148989999999999
Q gi|254780379|r 2 MIEQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQ 81 (108)
Q Consensus 2 Mi~~i~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~dl~~vmia~~k 81 (108)
T Consensus 1 m~t~~~Aa~AY~a~~~~~~~~~~----~~~~~~~~G~sF~~~Lk~Ai~~v~~~q~~ae~~~~a~~~G~adl~~vv~a~~~ 76 (103)
T PRK00732 1 MATPLSAANAYASLARMADPSGA----GGGGGSGGGPSFGALLKDAMGSVLEAGRKSDAQTVAMASGKANVMDVVTAVAE 76 (103)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 97648999999999974165567----88888989977999999999999999999999999998489979999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999999999999961889
Q gi|254780379|r 82 AERTLNLSIALRDKILSAVSEVSKMQI 108 (108)
Q Consensus 82 A~lsl~~~vqVRnK~v~AYqeImrMqV 108 (108)
T Consensus 77 a~~~lq~~v~vRnk~v~AYqeImrMpi 103 (103)
T PRK00732 77 TDVAVSTLVSVRDRVIQAYEEIMRMPI 103 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999999999999973899