Query gi|254780379|ref|YP_003064792.1| flagellar hook-basal body protein FliE [Candidatus Liberibacter asiaticus str. psy62] Match_columns 108 No_of_seqs 102 out of 524 Neff 6.0 Searched_HMMs 39220 Date Sun May 29 15:19:36 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780379.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK00253 fliE flagellar hook-b 100.0 6.3E-28 1.6E-32 185.2 13.6 102 4-108 2-105 (105) 2 PRK00732 fliE flagellar hook-b 100.0 1.6E-27 4.1E-32 182.9 13.5 103 2-108 1-103 (103) 3 PRK03907 fliE flagellar hook-b 99.9 3.1E-27 7.8E-32 181.2 12.4 85 24-108 15-100 (100) 4 pfam02049 FliE Flagellar hook- 99.9 2.2E-25 5.6E-30 170.2 12.2 84 25-108 13-97 (97) 5 PRK12728 fliE flagellar hook-b 99.9 2.4E-25 6.2E-30 170.0 11.8 77 32-108 20-97 (97) 6 COG1677 FliE Flagellar hook-ba 99.9 8.1E-25 2.1E-29 166.8 12.3 72 37-108 33-105 (105) 7 PRK00790 fliE flagellar hook-b 99.9 9E-25 2.3E-29 166.6 12.3 83 26-108 17-99 (99) 8 TIGR00205 fliE flagellar hook- 99.9 9.7E-22 2.5E-26 148.6 10.8 79 30-108 34-114 (114) 9 PRK12729 fliE flagellar hook-b 99.8 3.6E-19 9.2E-24 133.4 8.3 71 37-107 55-127 (127) 10 PRK01699 fliE flagellar hook-b 99.6 1.8E-15 4.6E-20 111.5 9.9 69 40-108 30-99 (99) 11 PRK01482 fliE flagellar hook-b 99.4 2.5E-12 6.5E-17 92.8 8.6 73 34-106 33-107 (108) 12 COG1166 SpeA Arginine decarbox 31.5 21 0.00054 16.3 1.0 26 48-73 412-437 (652) 13 KOG2280 consensus 29.0 43 0.0011 14.5 6.6 51 55-105 547-600 (829) 14 pfam07002 Copine Copine. This 26.8 17 0.00044 16.9 -0.1 50 33-83 81-133 (145) No 1 >PRK00253 fliE flagellar hook-basal body protein FliE; Reviewed Probab=99.96 E-value=6.3e-28 Score=185.25 Aligned_cols=102 Identities=18% Similarity=0.282 Sum_probs=89.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHH Q ss_conf 676528999966545421101367777778888665999999999999999999999999998148--989999999999 Q gi|254780379|r 4 EQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGK--TSMREAVDHIMQ 81 (108) Q Consensus 4 ~~i~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~--~dl~~vmia~~k 81 (108) +.+++|++..+.++........ .+..+.+++.+|+++|+++|++||+.|++|+....+|++|+ +|||+|||+.+| T Consensus 2 s~i~~i~~~l~qm~a~a~~a~~---~~~~~~a~~~~F~~~L~~al~~Vn~~Q~~A~~~~~~~~~G~~~v~l~~vMIa~qk 78 (105) T PRK00253 2 SAIQGIEGVLSQLQATAMEASG---TPKPLTAPTVSFAGMLKAALDKVNDTQQAARTLAEKFELGDPGVDLNDVMIALQK 78 (105) T ss_pred CCHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 5056599999999999998659---9999999999889999999999999999999999999869998879999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999999999999999999999961889 Q gi|254780379|r 82 AERTLNLSIALRDKILSAVSEVSKMQI 108 (108) Q Consensus 82 A~lsl~~~vqVRnK~v~AYqeImrMqV 108 (108) |+++|++++|||||+|+|||||||||| T Consensus 79 A~lsfq~~~qVRNK~v~AYqEIM~MqV 105 (105) T PRK00253 79 ASVSFQAGIQVRNKLVAAYQEIMNMQV 105 (105) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 888999999999999999999982899 No 2 >PRK00732 fliE flagellar hook-basal body protein FliE; Reviewed Probab=99.95 E-value=1.6e-27 Score=182.87 Aligned_cols=103 Identities=20% Similarity=0.349 Sum_probs=88.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 64676528999966545421101367777778888665999999999999999999999999998148989999999999 Q gi|254780379|r 2 MIEQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQ 81 (108) Q Consensus 2 Mi~~i~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~dl~~vmia~~k 81 (108) ||+++..-+++....+..+.... .++.+..++++|+++|+++++++|+.|+++|....++++|++|+||||++++| T Consensus 1 m~t~~~Aa~AY~a~~~~~~~~~~----~~~~~~~~G~sF~~~Lk~Ai~~v~~~q~~ae~~~~a~~~G~adl~~vv~a~~~ 76 (103) T PRK00732 1 MATPLSAANAYASLARMADPSGA----GGGGGSGGGPSFGALLKDAMGSVLEAGRKSDAQTVAMASGKANVMDVVTAVAE 76 (103) T ss_pred CCCHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 97648999999999974165567----88888989977999999999999999999999999998489979999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999999999999999999999961889 Q gi|254780379|r 82 AERTLNLSIALRDKILSAVSEVSKMQI 108 (108) Q Consensus 82 A~lsl~~~vqVRnK~v~AYqeImrMqV 108 (108) |+++|+++++||||+|+|||||||||| T Consensus 77 a~~~lq~~v~vRnk~v~AYqeImrMpi 103 (103) T PRK00732 77 TDVAVSTLVSVRDRVIQAYEEIMRMPI 103 (103) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 999999999999999999999973899 No 3 >PRK03907 fliE flagellar hook-basal body protein FliE; Reviewed Probab=99.95 E-value=3.1e-27 Score=181.19 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=76.8 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 13677777788886659999999999999999999999999981489-89999999999999999999999999999999 Q gi|254780379|r 24 DFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKT-SMREAVDHIMQAERTLNLSIALRDKILSAVSE 102 (108) Q Consensus 24 ~~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~-dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqe 102 (108) ....+.+......+++|+++|++++++||+.|..|+....++++|+. |+|+|||+++||+++|++++|||||+|+|||| T Consensus 15 ~~~~~~~~~~~~~g~~F~~~L~~ai~~VN~~Q~~ad~~~~~la~G~~~dlHevmIa~ekA~ls~ql~~qVRNK~veAYqE 94 (100) T PRK03907 15 KSETSKSTFKEGKGGEFAKMLKQSINELNKTQEQSDKALADIATGQVKDLHQAAIAIGKAETSMKLMLEVRNKAISAYKE 94 (100) T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 57777775456887649999999999999999999999999976886769999999999888999999999999999999 Q ss_pred HHCCCC Q ss_conf 961889 Q gi|254780379|r 103 VSKMQI 108 (108) Q Consensus 103 ImrMqV 108 (108) |||||| T Consensus 95 IMRMQI 100 (100) T PRK03907 95 ILRTQI 100 (100) T ss_pred HHHCCC T ss_conf 985359 No 4 >pfam02049 FliE Flagellar hook-basal body complex protein FliE. Probab=99.93 E-value=2.2e-25 Score=170.19 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=77.0 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 367777778888665999999999999999999999999998148-9899999999999999999999999999999999 Q gi|254780379|r 25 FTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGK-TSMREAVDHIMQAERTLNLSIALRDKILSAVSEV 103 (108) Q Consensus 25 ~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~-~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeI 103 (108) .....+.....++.+|+++|++++++||+.|.+++....++++|+ .|+|+|||+++||+++|++++|||||+|+||+|| T Consensus 13 ~~~~~~~~~~~~~~sF~~~l~~a~~~vn~~q~~a~~~~~~~~~G~~~~l~~vmia~~kA~~s~q~~~qVRnK~v~AYqei 92 (97) T pfam02049 13 GASAASASAAAGGASFADVLKQALDKVNDLQQKADALAEAFATGKSVDLHEVMIAVQKASLSFQATVQVRNKLVEAYQEI 92 (97) T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88877888899998899999999999999999999999999848988799999999999999999999999999999999 Q ss_pred HCCCC Q ss_conf 61889 Q gi|254780379|r 104 SKMQI 108 (108) Q Consensus 104 mrMqV 108 (108) ||||| T Consensus 93 mrMqv 97 (97) T pfam02049 93 MRMQI 97 (97) T ss_pred HCCCC T ss_conf 81889 No 5 >PRK12728 fliE flagellar hook-basal body protein FliE; Provisional Probab=99.93 E-value=2.4e-25 Score=169.96 Aligned_cols=77 Identities=22% Similarity=0.396 Sum_probs=72.6 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78888665999999999999999999999999998148-989999999999999999999999999999999961889 Q gi|254780379|r 32 EGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGK-TSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQI 108 (108) Q Consensus 32 ~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~-~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImrMqV 108 (108) .+...+.+|+++|++++++||+.|..|+....+|++|+ .|+|+|||+.+||+++|++++|||||+|+||+||||||| T Consensus 20 ~p~~~~~sF~~~L~~al~~Vn~~Q~~a~~~~~~~~~G~~~~lhevmia~qkA~ls~q~~~qVRNK~v~AYqEIMrMqv 97 (97) T PRK12728 20 TPSEKQVSFSDFLKEALNKVNDKQVEADNSTEALIKGEDVDLHDVMIAAQKASISLQLAVQVRNKVVEAYQEIMRMQL 97 (97) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 999998889999999999999999999999999984898889999999999999999999999999999999982889 No 6 >COG1677 FliE Flagellar hook-basal body protein [Cell motility and secretion / Intracellular trafficking and secretion] Probab=99.92 E-value=8.1e-25 Score=166.84 Aligned_cols=72 Identities=28% Similarity=0.417 Sum_probs=69.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 6659999999999999999999999999981489-89999999999999999999999999999999961889 Q gi|254780379|r 37 PISFSALLQDMAKGAIGDMEKAENVSLAALQGKT-SMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQI 108 (108) Q Consensus 37 ~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~-dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImrMqV 108 (108) +.+|+++|+++++++|+.|+.|+..+.+|++|+. ++|||||+++||+++|+++++||||+|+|||||||||| T Consensus 33 ~~sF~~~L~~ai~~vn~~Q~~a~~~~~~~~~G~~~~l~dVmia~~KAs~sLq~ai~VRnKlV~AYqEImrmqi 105 (105) T COG1677 33 GASFAEVLKNAIDDVNDTQKKAEKASEAFILGQAGDLHDVMIAMQKASVSLQTAIQVRNKLVSAYQEIMRMQI 105 (105) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 3339999999999999999999999999984896409999999999999999999999999999999986769 No 7 >PRK00790 fliE flagellar hook-basal body protein FliE; Reviewed Probab=99.92 E-value=9e-25 Score=166.58 Aligned_cols=83 Identities=33% Similarity=0.517 Sum_probs=76.8 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 67777778888665999999999999999999999999998148989999999999999999999999999999999961 Q gi|254780379|r 26 TQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSK 105 (108) Q Consensus 26 ~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImr 105 (108) ..++...+.+++.+|+++|+++++++++.++++|..+.++++|++|+|+||+++++|+++|+++++||||+|+||||||| T Consensus 17 ~~~pa~~~~a~g~sF~~~l~~a~~~~~~t~~~aE~~s~~~~~Gkad~~~vv~a~~~Ae~slq~~v~VRdKvv~AYqEI~R 96 (99) T PRK00790 17 ASAPAAAPAAPGASFASVLGQAAGDAVQTLKAAEATSIAAIKGKADPRAVVEAVMQAEQALQTAVAIRDKVVEAYQEILR 96 (99) T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 78988899999977999999999999999999999999987389979999999999999999999999999999999981 Q ss_pred CCC Q ss_conf 889 Q gi|254780379|r 106 MQI 108 (108) Q Consensus 106 MqV 108 (108) ||| T Consensus 97 M~i 99 (99) T PRK00790 97 MPI 99 (99) T ss_pred CCC T ss_conf 889 No 8 >TIGR00205 fliE flagellar hook-basal body complex protein (FliE); InterPro: IPR001624 Four genes from the major Bacillus subtilis chemotaxis locus have been shown to encode proteins that are similar to the Salmonella typhimurium FlgB, FlgC, FlgG and FliF proteins; a further gene product is similar to the Escherichia coli FliE protein . All of these proteins are thought to form part of the hook-basal body complex of the bacterial flagella . The FlgB, FlgC and FlgG proteins are components of the proximal and distal rods; FliF forms the M-ring that anchors the rod assembly to the membrane; but the role of FliE has not yet been determined . The similarity between the proteins in these two organisms suggests that the structures of the M-ring and the rod may be similar . Nevertheless, some differences in size and amino acid composition between some of the homologues suggest the basal body proteins may be organised slightly differently within B. subtilis . From gel electrophoresis and autoradiography of 35S-labelled S. typhimurium hook-basal body complexes and the deduced number of sulphur-containing residues in FliE, the stoichiometry of the protein in the hook-basal body complex has been estimated to be about nine subunits . FliE does not undergo cleavage of a signal peptide, nor does it show any similarity to the axial components like the rod or hook proteins, which are thought to be exported by the flagellum-specific export pathway . On this evidence, it has been suggested that FliE may be in the vicinity of the MS ring, perhaps acting as an adaptor protein between ring and rod substructures .; GO: 0003774 motor activity, 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 flagellin-based flagellum. Probab=99.87 E-value=9.7e-22 Score=148.62 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=72.4 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 7778888665999999999999999999999999998148--98999999999999999999999999999999996188 Q gi|254780379|r 30 NEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGK--TSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQ 107 (108) Q Consensus 30 ~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~--~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImrMq 107 (108) ..+.+.+..+|+++|+++|+++|++|..++....++++|+ +||||||||++||+++|+++.+||||+|+||||||||| T Consensus 34 ~~~~~~~~~~F~~~L~~Si~~~n~sQ~~~~~~~~~~~~g~~~~~l~~v~ia~~KA~~sl~~~~~vrnk~v~AYqei~~~q 113 (114) T TIGR00205 34 SKAQDSDIKSFSDLLKNSIDELNESQLASDKVTEKLALGEKSVDLHDVMIAMQKASVSLKLLLEVRNKAVKAYQEIMRMQ 113 (114) T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 04677752028999999999886889999999999861998867889999999886999999999999999999996205 Q ss_pred C Q ss_conf 9 Q gi|254780379|r 108 I 108 (108) Q Consensus 108 V 108 (108) | T Consensus 114 ~ 114 (114) T TIGR00205 114 V 114 (114) T ss_pred C T ss_conf 9 No 9 >PRK12729 fliE flagellar hook-basal body protein FliE; Provisional Probab=99.79 E-value=3.6e-19 Score=133.40 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=67.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 665999999999999999999999999998148--98999999999999999999999999999999996188 Q gi|254780379|r 37 PISFSALLQDMAKGAIGDMEKAENVSLAALQGK--TSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQ 107 (108) Q Consensus 37 ~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~--~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImrMq 107 (108) .++|++.|++++++||++|.+|+.+.++++.|. +|+||||||++||+++|+++++||||+|+|||||++|- T Consensus 55 a~sFa~~Lk~Al~~VNd~Qv~ADeLtqqmV~dpnSVDlHDVmIA~eKAsmsL~~T~~IrnKvVeAYqEIt~~R 127 (127) T PRK12729 55 AESFSEAMKNALTSVNDLQVEADELTQKMVFDPNSVDAHDVMIASEKARVALTFTKTIADGVVRAYRELTSLR 127 (127) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999865887224888777733987452999999998603059999999999999999987229 No 10 >PRK01699 fliE flagellar hook-basal body protein FliE; Reviewed Probab=99.64 E-value=1.8e-15 Score=111.49 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=63.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9999999999999999999999999981489-89999999999999999999999999999999961889 Q gi|254780379|r 40 FSALLQDMAKGAIGDMEKAENVSLAALQGKT-SMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQI 108 (108) Q Consensus 40 F~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~-dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImrMqV 108 (108) -+..+-+.++++|+.|..++....++++|++ ++|||+|++.||+.+|.++.+||||++++|+|++|||| T Consensus 30 ~Gk~F~~ll~d~N~tQnna~~Av~~l~T~g~gn~hdvlIqmkKAes~mktaa~VRdn~IeaYKelinmQi 99 (99) T PRK01699 30 EGKKFIDLLEDMNQTQNNAQTAVYDLLTKGVGETHDVLIQQKKAESQMKTAALVRDNLIENYKSLINMQI 99 (99) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 1026999999999988879999999884377729999999999999999999999999999999986129 No 11 >PRK01482 fliE flagellar hook-basal body protein FliE; Reviewed Probab=99.38 E-value=2.5e-12 Score=92.83 Aligned_cols=73 Identities=11% Similarity=0.194 Sum_probs=67.7 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 88866599999999999999999999999999814--89899999999999999999999999999999999618 Q gi|254780379|r 34 GSSPISFSALLQDMAKGAIGDMEKAENVSLAALQG--KTSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKM 106 (108) Q Consensus 34 ~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G--~~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImrM 106 (108) .....+|.++|.+++++||+.|...+.+.++.+.. .+|+||+|||+.||+++|.++..|++|.|.|||||++. T Consensus 33 n~~a~sF~~~lln~~~~vN~sQl~~~k~~eq~i~~P~SVDVHDv~IA~~kA~msLs~~k~v~dr~Vkayqdi~n~ 107 (108) T PRK01482 33 NKKAKTFKDTLLNAIDDVNNSQLNVSKVTEQAILDPESVDVHDVTIAMAKANMNLSIAKAVVERSIKAYQDIINI 107 (108) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 223656999999999887387604999988652695644299999999874003899999999999999998714 No 12 >COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Probab=31.50 E-value=21 Score=16.30 Aligned_cols=26 Identities=12% Similarity=-0.010 Sum_probs=10.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 99999999999999999981489899 Q gi|254780379|r 48 AKGAIGDMEKAENVSLAALQGKTSMR 73 (108) Q Consensus 48 i~~vn~~q~~a~~~~~~~~~G~~dl~ 73 (108) .+-.++.+..-+.....|..|-.||. T Consensus 412 ~E~~hds~~~~~~~~~~f~~G~l~L~ 437 (652) T COG1166 412 REWYHDSQDDLEDAHSLFNLGYLSLQ 437 (652) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHH T ss_conf 99998767679999987503532288 No 13 >KOG2280 consensus Probab=28.97 E-value=43 Score=14.49 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=41.2 Q ss_pred HHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC Q ss_conf 99999999999814898-999999999999999999999999--9999999961 Q gi|254780379|r 55 MEKAENVSLAALQGKTS-MREAVDHIMQAERTLNLSIALRDK--ILSAVSEVSK 105 (108) Q Consensus 55 q~~a~~~~~~~~~G~~d-l~~vmia~~kA~lsl~~~vqVRnK--~v~AYqeImr 105 (108) -...-++..+-.+|+.| ++.|++.+.+-..-.++.+.+||- .+.-|+++|| T Consensus 547 ~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829) T KOG2280 547 KDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829) T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH T ss_conf 547899999986289405999999999998888899998855113579999998 No 14 >pfam07002 Copine Copine. This family represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca(2+)-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth. Probab=26.77 E-value=17 Score=16.86 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=29.2 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-CCC-CHHHHHHHHHHHH Q ss_conf 888866599999999999999999999999999-81-489-8999999999999 Q gi|254780379|r 33 GGSSPISFSALLQDMAKGAIGDMEKAENVSLAA-LQ-GKT-SMREAVDHIMQAE 83 (108) Q Consensus 33 ~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~-~~-G~~-dl~~vmia~~kA~ 83 (108) .-.++..|+.+++.+++-+...++... -..-+ ++ |++ |+.++.-+.-+|+ T Consensus 81 ~l~gPT~fapiI~~a~~~a~~~~~~~~-Y~VLlIiTDG~i~D~~~Ti~aIv~AS 133 (145) T pfam07002 81 QLSGPTNFAPIIDAAARIAEATQKSGQ-YHVLLIITDGQVTDMKATIDAIVRAS 133 (145) T ss_pred EECCCCCHHHHHHHHHHHHHHHCCCCE-EEEEEEECCCCCCCHHHHHHHHHHHH T ss_conf 654875279999999999997223771-89999963897356999999999982 Done!