Query gi|254780379|ref|YP_003064792.1| flagellar hook-basal body protein FliE [Candidatus Liberibacter asiaticus str. psy62] Match_columns 108 No_of_seqs 102 out of 524 Neff 6.0 Searched_HMMs 23785 Date Mon May 30 09:45:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780379.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2bpq_A Anthranilate phosphorib 38.4 8 0.00034 17.5 0.9 52 20-71 7-58 (373) 2 3ogi_A ESXP, putative ESAT-6-l 16.1 48 0.002 12.9 3.4 33 64-96 4-36 (101) 3 1vqu_A Anthranilate phosphorib 15.2 50 0.0021 12.8 1.3 34 37-70 24-57 (374) 4 2ia9_A Putative septation prot 13.5 57 0.0024 12.5 3.1 16 89-104 72-87 (100) 5 1se7_A HOT, homologue of the t 11.4 66 0.0028 12.1 1.3 10 99-108 27-36 (83) 6 2p61_A Hypothetical protein TM 8.2 88 0.0037 11.4 4.7 74 32-105 29-130 (162) 7 2i9x_A Putative septation prot 7.5 94 0.004 11.2 2.8 15 88-102 71-85 (87) 8 1ylm_A Hypothetical protein BS 7.5 41 0.0017 13.3 -1.2 18 86-103 89-106 (144) 9 2rn9_A COX17, cytochrome C oxi 7.5 94 0.004 11.2 1.6 11 95-105 51-61 (67) 10 2fq3_A Transcription regulator 6.3 1.1E+02 0.0046 10.8 2.8 16 87-102 47-62 (104) No 1 >2bpq_A Anthranilate phosphoribosyltransferase; tryptophan biosynthesis, transferase phosphoribosyltransferase, amino-acid biosynthesis; 1.9A {Mycobacterium tuberculosis} PDB: 1zvw_A* Probab=38.39 E-value=8 Score=17.53 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=33.6 Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 2110136777777888866599999999999999999999999999814898 Q gi|254780379|r 20 GMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTS 71 (108) Q Consensus 20 ~~~~~~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~d 71 (108) +...+.....+.......++|.++|+..+++-+=+..++......++.|+++ T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~il~kl~~g~~Lt~eEa~~~~~~il~G~~~ 58 (373) T 2bpq_A 7 GSSGGSRGGSPKAEAASVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNAR 58 (373) T ss_dssp ------------------CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCCC T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 8888978887577767778889999999769997999999999999879999 No 2 >3ogi_A ESXP, putative ESAT-6-like protein 6; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis} Probab=16.06 E-value=48 Score=12.90 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=23.4 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998148989999999999999999999999999 Q gi|254780379|r 64 AALQGKTSMREAVDHIMQAERTLNLSIALRDKI 96 (108) Q Consensus 64 ~~~~G~~dl~~vmia~~kA~lsl~~~vqVRnK~ 96 (108) .+.-|++|.|.++|..|.|.+--+--.-||+-+ T Consensus 4 nyqfgdvdahga~iraqaa~lea~hqaii~dvl 36 (101) T 3ogi_A 4 NYQFGDVDAHGAMIRAQAGLLEAEHQAIVRDVL 36 (101) T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 012166454227897775010478999999999 No 3 >1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Nostoc SP} Probab=15.25 E-value=50 Score=12.82 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=19.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 6659999999999999999999999999981489 Q gi|254780379|r 37 PISFSALLQDMAKGAIGDMEKAENVSLAALQGKT 70 (108) Q Consensus 37 ~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~ 70 (108) ..+|.++|+...++-+=+..++......++.|++ T Consensus 24 ~~~~~~ll~kl~~g~~Ls~eEa~~~~~~il~g~~ 57 (374) T 1vqu_A 24 STSWYLLLQQLIDGESLSRSQAAELMQGWLSEAV 57 (374) T ss_dssp -CCTHHHHHHHHTTCCCCHHHHHHHHHHHHTTCS T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC T ss_conf 2129999999967999799999999999987999 No 4 >2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1 Probab=13.53 E-value=57 Score=12.49 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=7.5 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999996 Q gi|254780379|r 89 SIALRDKILSAVSEVS 104 (108) Q Consensus 89 ~vqVRnK~v~AYqeIm 104 (108) --++++.+++||++.+ T Consensus 72 R~~i~~aVl~aY~~~~ 87 (100) T 2ia9_A 72 RGKIQDAVLNEYHRLG 87 (100) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999876 No 5 >1se7_A HOT, homologue of the theta subunit of DNA polymerase III; E. coli bacteriophage P1, homologue of theta, E. coli DNA polymerase III; NMR {Enterobacteria phage P1} SCOP: a.237.1.1 PDB: 2ido_B* Probab=11.40 E-value=66 Score=12.09 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=7.2 Q ss_pred HHHHHHCCCC Q ss_conf 9999961889 Q gi|254780379|r 99 AVSEVSKMQI 108 (108) Q Consensus 99 AYqeImrMqV 108 (108) ||+|=+|||| T Consensus 27 afkERyNmpV 36 (83) T 1se7_A 27 AYKERLNIPV 36 (83) T ss_dssp HHHHHTCCCC T ss_pred HHHHHHCCCC T ss_conf 9999817854 No 6 >2p61_A Hypothetical protein TM_1646; structural genomics, unknown function, PSI-2, protein structure initiative; 2.70A {Thermotoga maritima MSB8} SCOP: a.24.29.1 Probab=8.16 E-value=88 Score=11.36 Aligned_cols=74 Identities=15% Similarity=0.228 Sum_probs=34.5 Q ss_pred CCCCCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCC--CHHHH-------H----HHH---HH-------HH Q ss_conf 7888866599999999999-----99999999999999981489--89999-------9----999---99-------99 Q gi|254780379|r 32 EGGSSPISFSALLQDMAKG-----AIGDMEKAENVSLAALQGKT--SMREA-------V----DHI---MQ-------AE 83 (108) Q Consensus 32 ~~~~~~~sF~~~L~~~i~~-----vn~~q~~a~~~~~~~~~G~~--dl~~v-------m----ia~---~k-------A~ 83 (108) .+.+...+|.++|.+.-.. ++....+=+.+...+..--. |+... + -.+ .+ -. T Consensus 29 ~~~~~~~~F~~~l~~~~~~~~~e~L~~ll~~I~~~G~~L~~~~t~~~l~~YK~lIK~Fl~~~v~~~~~l~~~~~~~~gr~ 108 (162) T 2p61_A 29 VGESKKKEFFDILEDVKEDHFEKLLEEAVEEVIDSGNELVRSPTPSNLKRYKNAIKEFLKLIEKKIYKLAGSFDMNSGRA 108 (162) T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE T ss_conf 46654245999999999999999999999999999999863899999999999999999999998886643247889984 Q ss_pred HHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999961 Q gi|254780379|r 84 RTLNLSIALRDKILSAVSEVSK 105 (108) Q Consensus 84 lsl~~~vqVRnK~v~AYqeImr 105 (108) --+...-.|-.|+.+=+++++. T Consensus 109 r~y~iV~~ID~kL~eLt~~ll~ 130 (162) T 2p61_A 109 RLHLVVEEVNEKLMDLTEKIMK 130 (162) T ss_dssp HHHHHHHHHHHHHHHHHHHHHT T ss_pred EEEEEHHHHHHHHHHHHHHHHH T ss_conf 7886348988999999999998 No 7 >2i9x_A Putative septation protein spovg; APC86317.1, structural genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis atcc 12228} SCOP: d.366.1.1 Probab=7.54 E-value=94 Score=11.19 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999999 Q gi|254780379|r 88 LSIALRDKILSAVSE 102 (108) Q Consensus 88 ~~vqVRnK~v~AYqe 102 (108) +--++.+.+++||+| T Consensus 71 ~R~~i~~aVl~aY~e 85 (87) T 2i9x_A 71 MRQEIQDAVMKVYDE 85 (87) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHC T ss_conf 999999999999860 No 8 >1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics, hypothetical cytosolic protein, PSI, protein structure initiative; 1.83A {Bacillus subtilis subsp} Probab=7.53 E-value=41 Score=13.31 Aligned_cols=18 Identities=22% Similarity=0.205 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999 Q gi|254780379|r 86 LNLSIALRDKILSAVSEV 103 (108) Q Consensus 86 l~~~vqVRnK~v~AYqeI 103 (108) ++-++..||.+|--|.+| T Consensus 89 l~~~~g~RN~LvH~Y~~i 106 (144) T 1ylm_A 89 LKKLIAYRKTLVQQYLLA 106 (144) T ss_dssp HHHHHTTHHHHHTCGGGC T ss_pred HHHHHHHHHHHHHCCCCC T ss_conf 999998876851023556 No 9 >2rn9_A COX17, cytochrome C oxidase copper chaperone; coiled coil-helix-coiled coil-helix domain, copper binding protein, alpha-hairpin fold, metal-binding; NMR {Homo sapiens} PDB: 2rnb_A Probab=7.51 E-value=94 Score=11.18 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=0.0 Q ss_pred HHHHHHHHHHC Q ss_conf 99999999961 Q gi|254780379|r 95 KILSAVSEVSK 105 (108) Q Consensus 95 K~v~AYqeImr 105 (108) ++++||++-|| T Consensus 51 ~lIeahk~Cmr 61 (67) T 2rn9_A 51 HLIEAHKECMR 61 (67) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 10 >2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18 Probab=6.25 E-value=1.1e+02 Score=10.79 Aligned_cols=16 Identities=6% Similarity=0.179 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999999 Q gi|254780379|r 87 NLSIALRDKILSAVSE 102 (108) Q Consensus 87 ~~~vqVRnK~v~AYqe 102 (108) +.-+++||.++.-|++ T Consensus 47 e~Yl~iRN~Ii~~w~~ 62 (104) T 2fq3_A 47 EVYMRYRNFMVNSYRL 62 (104) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999983 Done!