Query         gi|254780379|ref|YP_003064792.1| flagellar hook-basal body protein FliE [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 108
No_of_seqs    102 out of 524
Neff          6.0 
Searched_HMMs 23785
Date          Mon May 30 09:45:05 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780379.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2bpq_A Anthranilate phosphorib  38.4       8 0.00034   17.5   0.9   52   20-71      7-58  (373)
  2 3ogi_A ESXP, putative ESAT-6-l  16.1      48   0.002   12.9   3.4   33   64-96      4-36  (101)
  3 1vqu_A Anthranilate phosphorib  15.2      50  0.0021   12.8   1.3   34   37-70     24-57  (374)
  4 2ia9_A Putative septation prot  13.5      57  0.0024   12.5   3.1   16   89-104    72-87  (100)
  5 1se7_A HOT, homologue of the t  11.4      66  0.0028   12.1   1.3   10   99-108    27-36  (83)
  6 2p61_A Hypothetical protein TM   8.2      88  0.0037   11.4   4.7   74   32-105    29-130 (162)
  7 2i9x_A Putative septation prot   7.5      94   0.004   11.2   2.8   15   88-102    71-85  (87)
  8 1ylm_A Hypothetical protein BS   7.5      41  0.0017   13.3  -1.2   18   86-103    89-106 (144)
  9 2rn9_A COX17, cytochrome C oxi   7.5      94   0.004   11.2   1.6   11   95-105    51-61  (67)
 10 2fq3_A Transcription regulator   6.3 1.1E+02  0.0046   10.8   2.8   16   87-102    47-62  (104)

No 1  
>2bpq_A Anthranilate phosphoribosyltransferase; tryptophan biosynthesis, transferase phosphoribosyltransferase, amino-acid biosynthesis; 1.9A {Mycobacterium tuberculosis} PDB: 1zvw_A*
Probab=38.39  E-value=8  Score=17.53  Aligned_cols=52  Identities=13%  Similarity=0.050  Sum_probs=33.6

Q ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             2110136777777888866599999999999999999999999999814898
Q gi|254780379|r   20 GMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTS   71 (108)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~d   71 (108)
                      +...+.....+.......++|.++|+..+++-+=+..++......++.|+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~il~kl~~g~~Lt~eEa~~~~~~il~G~~~   58 (373)
T 2bpq_A            7 GSSGGSRGGSPKAEAASVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNAR   58 (373)
T ss_dssp             ------------------CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             8888978887577767778889999999769997999999999999879999


No 2  
>3ogi_A ESXP, putative ESAT-6-like protein 6; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis}
Probab=16.06  E-value=48  Score=12.90  Aligned_cols=33  Identities=12%  Similarity=0.032  Sum_probs=23.4

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998148989999999999999999999999999
Q gi|254780379|r   64 AALQGKTSMREAVDHIMQAERTLNLSIALRDKI   96 (108)
Q Consensus        64 ~~~~G~~dl~~vmia~~kA~lsl~~~vqVRnK~   96 (108)
                      .+.-|++|.|.++|..|.|.+--+--.-||+-+
T Consensus         4 nyqfgdvdahga~iraqaa~lea~hqaii~dvl   36 (101)
T 3ogi_A            4 NYQFGDVDAHGAMIRAQAGLLEAEHQAIVRDVL   36 (101)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             012166454227897775010478999999999


No 3  
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Nostoc SP}
Probab=15.25  E-value=50  Score=12.82  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=19.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             6659999999999999999999999999981489
Q gi|254780379|r   37 PISFSALLQDMAKGAIGDMEKAENVSLAALQGKT   70 (108)
Q Consensus        37 ~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~   70 (108)
                      ..+|.++|+...++-+=+..++......++.|++
T Consensus        24 ~~~~~~ll~kl~~g~~Ls~eEa~~~~~~il~g~~   57 (374)
T 1vqu_A           24 STSWYLLLQQLIDGESLSRSQAAELMQGWLSEAV   57 (374)
T ss_dssp             -CCTHHHHHHHHTTCCCCHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             2129999999967999799999999999987999


No 4  
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=13.53  E-value=57  Score=12.49  Aligned_cols=16  Identities=13%  Similarity=0.268  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999996
Q gi|254780379|r   89 SIALRDKILSAVSEVS  104 (108)
Q Consensus        89 ~vqVRnK~v~AYqeIm  104 (108)
                      --++++.+++||++.+
T Consensus        72 R~~i~~aVl~aY~~~~   87 (100)
T 2ia9_A           72 RGKIQDAVLNEYHRLG   87 (100)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999876


No 5  
>1se7_A HOT, homologue of the theta subunit of DNA polymerase III; E. coli bacteriophage P1, homologue of theta, E. coli DNA polymerase III; NMR {Enterobacteria phage P1} SCOP: a.237.1.1 PDB: 2ido_B*
Probab=11.40  E-value=66  Score=12.09  Aligned_cols=10  Identities=20%  Similarity=0.238  Sum_probs=7.2

Q ss_pred             HHHHHHCCCC
Q ss_conf             9999961889
Q gi|254780379|r   99 AVSEVSKMQI  108 (108)
Q Consensus        99 AYqeImrMqV  108 (108)
                      ||+|=+||||
T Consensus        27 afkERyNmpV   36 (83)
T 1se7_A           27 AYKERLNIPV   36 (83)
T ss_dssp             HHHHHTCCCC
T ss_pred             HHHHHHCCCC
T ss_conf             9999817854


No 6  
>2p61_A Hypothetical protein TM_1646; structural genomics, unknown function, PSI-2, protein structure initiative; 2.70A {Thermotoga maritima MSB8} SCOP: a.24.29.1
Probab=8.16  E-value=88  Score=11.36  Aligned_cols=74  Identities=15%  Similarity=0.228  Sum_probs=34.5

Q ss_pred             CCCCCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCC--CHHHH-------H----HHH---HH-------HH
Q ss_conf             7888866599999999999-----99999999999999981489--89999-------9----999---99-------99
Q gi|254780379|r   32 EGGSSPISFSALLQDMAKG-----AIGDMEKAENVSLAALQGKT--SMREA-------V----DHI---MQ-------AE   83 (108)
Q Consensus        32 ~~~~~~~sF~~~L~~~i~~-----vn~~q~~a~~~~~~~~~G~~--dl~~v-------m----ia~---~k-------A~   83 (108)
                      .+.+...+|.++|.+.-..     ++....+=+.+...+..--.  |+...       +    -.+   .+       -.
T Consensus        29 ~~~~~~~~F~~~l~~~~~~~~~e~L~~ll~~I~~~G~~L~~~~t~~~l~~YK~lIK~Fl~~~v~~~~~l~~~~~~~~gr~  108 (162)
T 2p61_A           29 VGESKKKEFFDILEDVKEDHFEKLLEEAVEEVIDSGNELVRSPTPSNLKRYKNAIKEFLKLIEKKIYKLAGSFDMNSGRA  108 (162)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             46654245999999999999999999999999999999863899999999999999999999998886643247889984


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999961
Q gi|254780379|r   84 RTLNLSIALRDKILSAVSEVSK  105 (108)
Q Consensus        84 lsl~~~vqVRnK~v~AYqeImr  105 (108)
                      --+...-.|-.|+.+=+++++.
T Consensus       109 r~y~iV~~ID~kL~eLt~~ll~  130 (162)
T 2p61_A          109 RLHLVVEEVNEKLMDLTEKIMK  130 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEHHHHHHHHHHHHHHHHH
T ss_conf             7886348988999999999998


No 7  
>2i9x_A Putative septation protein spovg; APC86317.1, structural genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis atcc 12228} SCOP: d.366.1.1
Probab=7.54  E-value=94  Score=11.19  Aligned_cols=15  Identities=13%  Similarity=0.410  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|254780379|r   88 LSIALRDKILSAVSE  102 (108)
Q Consensus        88 ~~vqVRnK~v~AYqe  102 (108)
                      +--++.+.+++||+|
T Consensus        71 ~R~~i~~aVl~aY~e   85 (87)
T 2i9x_A           71 MRQEIQDAVMKVYDE   85 (87)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             999999999999860


No 8  
>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics, hypothetical cytosolic protein, PSI, protein structure initiative; 1.83A {Bacillus subtilis subsp}
Probab=7.53  E-value=41  Score=13.31  Aligned_cols=18  Identities=22%  Similarity=0.205  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999
Q gi|254780379|r   86 LNLSIALRDKILSAVSEV  103 (108)
Q Consensus        86 l~~~vqVRnK~v~AYqeI  103 (108)
                      ++-++..||.+|--|.+|
T Consensus        89 l~~~~g~RN~LvH~Y~~i  106 (144)
T 1ylm_A           89 LKKLIAYRKTLVQQYLLA  106 (144)
T ss_dssp             HHHHHTTHHHHHTCGGGC
T ss_pred             HHHHHHHHHHHHHCCCCC
T ss_conf             999998876851023556


No 9  
>2rn9_A COX17, cytochrome C oxidase copper chaperone; coiled coil-helix-coiled coil-helix domain, copper binding protein, alpha-hairpin fold, metal-binding; NMR {Homo sapiens} PDB: 2rnb_A
Probab=7.51  E-value=94  Score=11.18  Aligned_cols=11  Identities=18%  Similarity=0.359  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999961
Q gi|254780379|r   95 KILSAVSEVSK  105 (108)
Q Consensus        95 K~v~AYqeImr  105 (108)
                      ++++||++-||
T Consensus        51 ~lIeahk~Cmr   61 (67)
T 2rn9_A           51 HLIEAHKECMR   61 (67)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 10 
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=6.25  E-value=1.1e+02  Score=10.79  Aligned_cols=16  Identities=6%  Similarity=0.179  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999
Q gi|254780379|r   87 NLSIALRDKILSAVSE  102 (108)
Q Consensus        87 ~~~vqVRnK~v~AYqe  102 (108)
                      +.-+++||.++.-|++
T Consensus        47 e~Yl~iRN~Ii~~w~~   62 (104)
T 2fq3_A           47 EVYMRYRNFMVNSYRL   62 (104)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999983


Done!