RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780379|ref|YP_003064792.1| flagellar hook-basal body
protein FliE [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>gnl|CDD|145299 pfam02049, FliE, Flagellar hook-basal body complex protein FliE. 
          Length = 97

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 17/84 (20%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 26  TQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKT-SMREAVDHIMQAER 84
              ++    +   SF+ +L+          +KA+ ++ A   GK+  + E +  + +A  
Sbjct: 14  ASAASASAAAGGASFADVLKQALDKVNDLQQKADALAEAFATGKSVDLHEVMIAVQKASL 73

Query: 85  TLNLSIALRDKILSAVSEVSKMQI 108
           +   ++ +R+K++ A  E+ +MQI
Sbjct: 74  SFQATVQVRNKLVEAYQEIMRMQI 97


>gnl|CDD|31863 COG1677, FliE, Flagellar hook-basal body protein [Cell motility and
           secretion / Intracellular trafficking and secretion].
          Length = 105

 Score = 41.5 bits (97), Expect = 5e-05
 Identities = 20/82 (24%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 28  NSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTS-MREAVDHIMQAERTL 86
           +++++   +  SF+ +L++         +KAE  S A + G+   + + +  + +A  +L
Sbjct: 24  STSQKASENGASFAEVLKNAIDDVNDTQKKAEKASEAFILGQAGDLHDVMIAMQKASVSL 83

Query: 87  NLSIALRDKILSAVSEVSKMQI 108
             +I +R+K++SA  E+ +MQI
Sbjct: 84  QTAIQVRNKLVSAYQEIMRMQI 105


>gnl|CDD|147030 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region.  GTR1
          was first identified in S. cerevisiae as a suppressor
          of a mutation in RCC1. Biochemical analysis revealed
          that Gtr1 is in fact a G protein of the Ras family. The
          RagA/B proteins are the human homologues of Gtr1.
          Included in this family is the human Rag C, a novel
          protein that has been shown to interact with RagA/B.
          Length = 230

 Score = 26.0 bits (58), Expect = 2.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 68 GKTSMREAVDHIMQAERTLNL 88
          GK+SMR  +        TL L
Sbjct: 11 GKSSMRSIIFSNYSPRDTLRL 31


>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 263

 Score = 24.1 bits (52), Expect = 8.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 41  SALLQDMAKGAIGDMEKAENVSLAALQGKT 70
           + + QD   G   ++   EN++LA  +GK 
Sbjct: 83  ARVFQDPLAGTAPELTIEENLALAESRGKK 112


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.313    0.125    0.322 

Gapped
Lambda     K      H
   0.267   0.0787    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,060,236
Number of extensions: 43807
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 8
Length of query: 108
Length of database: 6,263,737
Length adjustment: 75
Effective length of query: 33
Effective length of database: 4,643,062
Effective search space: 153221046
Effective search space used: 153221046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)