RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780379|ref|YP_003064792.1| flagellar hook-basal body protein FliE [Candidatus Liberibacter asiaticus str. psy62] (108 letters) >gnl|CDD|179126 PRK00790, fliE, flagellar hook-basal body protein FliE; Reviewed. Length = 109 Score = 73.2 bits (180), Expect = 1e-14 Identities = 29/77 (37%), Positives = 48/77 (62%) Query: 32 EGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQAERTLNLSIA 91 + SF+++L MA A+ ++ AE S+ A++GK RE VD +MQAE+ L ++A Sbjct: 33 APAAPGASFASVLGQMAGDAVQTLKAAEATSIQAIKGKADTREVVDAVMQAEQALQTAVA 92 Query: 92 LRDKILSAVSEVSKMQI 108 +RDK++ A E+ +M I Sbjct: 93 IRDKVVEAYLEILRMPI 109 >gnl|CDD|179101 PRK00732, fliE, flagellar hook-basal body protein FliE; Reviewed. Length = 102 Score = 35.1 bits (81), Expect = 0.004 Identities = 18/77 (23%), Positives = 39/77 (50%) Query: 32 EGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQAERTLNLSIA 91 G SF ALL+D + K++ + A GK ++ + V + + + ++ ++ Sbjct: 26 GGDKGGPSFGALLKDAMGSVLEAGRKSDAQTAAMASGKANLMDVVTAVAETDVAVSTLVS 85 Query: 92 LRDKILSAVSEVSKMQI 108 +RD+++ A E+ +M I Sbjct: 86 VRDRVIQAYEEIMRMPI 102 >gnl|CDD|183706 PRK12728, fliE, flagellar hook-basal body protein FliE; Provisional. Length = 102 Score = 28.4 bits (64), Expect = 0.38 Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 22/116 (18%) Query: 1 MMIEQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDME---- 56 MMI +I N + + + + + SFS L++ A+ + Sbjct: 1 MMINEI-SPNQKVFDQNGS------NKTNKNNPAEAQKSFSDFLKE----ALNKVNELQV 49 Query: 57 KAENVSLAALQGKTSMREAVDHIM----QAERTLNLSIALRDKILSAVSEVSKMQI 108 +A+N + ++G+ + +M +A +L L++ +R+K++ A E+ +MQ+ Sbjct: 50 EADNSTEKLVKGE---IVDLHDVMIAAQKASISLQLTVQIRNKVVEAYQEIMRMQL 102 >gnl|CDD|172978 PRK14507, PRK14507, putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional. Length = 1693 Score = 27.0 bits (60), Expect = 1.1 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 7/48 (14%) Query: 48 AKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQAERTLNLSIALRDK 95 A G GD AE +SL+ R+ D +AER RDK Sbjct: 928 ALGEAGDDMSAELLSLSEALRHLPPRDETDPERRAER-------PRDK 968 >gnl|CDD|177762 PLN00164, PLN00164, glucosyltransferase; Provisional. Length = 480 Score = 26.9 bits (60), Expect = 1.2 Identities = 9/24 (37%), Positives = 14/24 (58%) Query: 28 NSNEEGGSSPISFSALLQDMAKGA 51 + EEGGSS + L +++ GA Sbjct: 452 KAVEEGGSSYAALQRLAREIRHGA 475 >gnl|CDD|179672 PRK03907, fliE, flagellar hook-basal body protein FliE; Reviewed. Length = 97 Score = 26.4 bits (58), Expect = 1.9 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 46 DMAKGAIGDMEKAENVSLAALQGKTS-----MREAVDHIMQAERTLNLSIALRDKILSAV 100 + K +I ++ K + S AL + + +A I +AE ++ L + +R+K +SA Sbjct: 30 KLLKQSINELNKTQEQSEKALADIATGQVKDLHQAAIAIGKAETSMKLMLEVRNKAISAY 89 Query: 101 SEVSKMQI 108 E+ + QI Sbjct: 90 KEILRTQI 97 >gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional. Length = 381 Score = 25.8 bits (57), Expect = 2.6 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 6/29 (20%) Query: 82 AERTL--NLS----IALRDKILSAVSEVS 104 AE TL N+ IALR ++L +S++S Sbjct: 31 AEYTLRRNVEDLADIALRQRVLKDMSDLS 59 >gnl|CDD|178149 PLN02534, PLN02534, UDP-glycosyltransferase. Length = 491 Score = 25.6 bits (56), Expect = 2.6 Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 31 EEGGSSPISFSALLQDMAK 49 E GGSS I+ S L+QD+ K Sbjct: 468 ELGGSSHINLSILIQDVLK 486 >gnl|CDD|162757 TIGR02195, heptsyl_trn_II, lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. Length = 334 Score = 24.6 bits (54), Expect = 5.1 Identities = 12/29 (41%), Positives = 16/29 (55%) Query: 51 AIGDMEKAENVSLAALQGKTSMREAVDHI 79 A ++E L L G+TS+ EAVD I Sbjct: 221 AGNEIEALLPGELRNLAGETSLDEAVDLI 249 >gnl|CDD|152390 pfam11955, PORR, Plant organelle RNA recognition domain. This family, which was previously known as DUF860, has been shown to be a component of group II intron ribonucleoprotein particles in maize chloroplasts. The domain is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. All of the members are predicted to localize to mitochondria or chloroplasts. It seems likely that most PORR proteins function in organellar RNA metabolism. Length = 333 Score = 24.5 bits (54), Expect = 7.2 Identities = 9/23 (39%), Positives = 14/23 (60%) Query: 77 DHIMQAERTLNLSIALRDKILSA 99 D ++ E+ L L + L+D ILS Sbjct: 8 DKAVEREKRLRLVLKLKDLILSE 30 >gnl|CDD|129075 smart00842, FtsA, Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. Length = 187 Score = 24.0 bits (53), Expect = 8.8 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 13/44 (29%) Query: 47 MAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQAERTLNLSI 90 + KG I D+E A ++REAV+ +AER + I Sbjct: 37 IRKGVIVDIEAAAR----------AIREAVE---EAERMAGVKI 67 >gnl|CDD|161764 TIGR00205, fliE, flagellar hook-basal body complex protein FliE. fliE is a component of the flagellar hook-basal body complex located possibly at (MS-ring)-rod junction. Length = 108 Score = 23.7 bits (51), Expect = 9.7 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 9/107 (8%) Query: 3 IEQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVS 62 I N+ HT S++ SFS LL++ ++ V+ Sbjct: 9 ISPFINLNTQNPHTAV-------NLFSSKSKAQDNDSFSDLLKNSITDLNKTQLASDKVT 61 Query: 63 LAALQGKTS--MREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQ 107 A G +S + + + + +A ++++ +R+K + A E+ +MQ Sbjct: 62 EQAALGPSSVDLHDVMIAMQKASMSMSILKEVRNKAVKAYQEIMRMQ 108 >gnl|CDD|180730 PRK06851, PRK06851, hypothetical protein; Provisional. Length = 367 Score = 23.8 bits (52), Expect = 9.9 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%) Query: 28 NSNEEGGSSPISFSALLQDMAKGAI--GDMEK-AENVSLAALQGKTSMREAVDHIMQAER 84 +S P + DM I G EK AE + A + K + EA + +A+ Sbjct: 271 DSTAPHEYFPSREGDEIIDMYDELIDPGTDEKYAEEIKKAKERYKAKLNEATSFLAKAKA 330 Query: 85 TLN 87 + Sbjct: 331 LHD 333 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.313 0.125 0.322 Gapped Lambda K H 0.267 0.0658 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,592,489 Number of extensions: 85343 Number of successful extensions: 131 Number of sequences better than 10.0: 1 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 23 Length of query: 108 Length of database: 5,994,473 Length adjustment: 74 Effective length of query: 34 Effective length of database: 4,395,481 Effective search space: 149446354 Effective search space used: 149446354 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 50 (23.2 bits)