RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780379|ref|YP_003064792.1| flagellar hook-basal body
protein FliE [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>gnl|CDD|179126 PRK00790, fliE, flagellar hook-basal body protein FliE; Reviewed.
          Length = 109

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 29/77 (37%), Positives = 48/77 (62%)

Query: 32  EGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQAERTLNLSIA 91
              +   SF+++L  MA  A+  ++ AE  S+ A++GK   RE VD +MQAE+ L  ++A
Sbjct: 33  APAAPGASFASVLGQMAGDAVQTLKAAEATSIQAIKGKADTREVVDAVMQAEQALQTAVA 92

Query: 92  LRDKILSAVSEVSKMQI 108
           +RDK++ A  E+ +M I
Sbjct: 93  IRDKVVEAYLEILRMPI 109


>gnl|CDD|179101 PRK00732, fliE, flagellar hook-basal body protein FliE; Reviewed.
          Length = 102

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 18/77 (23%), Positives = 39/77 (50%)

Query: 32  EGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQAERTLNLSIA 91
            G     SF ALL+D     +    K++  + A   GK ++ + V  + + +  ++  ++
Sbjct: 26  GGDKGGPSFGALLKDAMGSVLEAGRKSDAQTAAMASGKANLMDVVTAVAETDVAVSTLVS 85

Query: 92  LRDKILSAVSEVSKMQI 108
           +RD+++ A  E+ +M I
Sbjct: 86  VRDRVIQAYEEIMRMPI 102


>gnl|CDD|183706 PRK12728, fliE, flagellar hook-basal body protein FliE;
           Provisional.
          Length = 102

 Score = 28.4 bits (64), Expect = 0.38
 Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 22/116 (18%)

Query: 1   MMIEQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDME---- 56
           MMI +I   N  +   +         + +      +  SFS  L++    A+  +     
Sbjct: 1   MMINEI-SPNQKVFDQNGS------NKTNKNNPAEAQKSFSDFLKE----ALNKVNELQV 49

Query: 57  KAENVSLAALQGKTSMREAVDHIM----QAERTLNLSIALRDKILSAVSEVSKMQI 108
           +A+N +   ++G+      +  +M    +A  +L L++ +R+K++ A  E+ +MQ+
Sbjct: 50  EADNSTEKLVKGE---IVDLHDVMIAAQKASISLQLTVQIRNKVVEAYQEIMRMQL 102


>gnl|CDD|172978 PRK14507, PRK14507, putative bifunctional
           4-alpha-glucanotransferase/malto-oligosyltrehalose
           synthase; Provisional.
          Length = 1693

 Score = 27.0 bits (60), Expect = 1.1
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 48  AKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQAERTLNLSIALRDK 95
           A G  GD   AE +SL+        R+  D   +AER        RDK
Sbjct: 928 ALGEAGDDMSAELLSLSEALRHLPPRDETDPERRAER-------PRDK 968


>gnl|CDD|177762 PLN00164, PLN00164, glucosyltransferase; Provisional.
          Length = 480

 Score = 26.9 bits (60), Expect = 1.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 28  NSNEEGGSSPISFSALLQDMAKGA 51
            + EEGGSS  +   L +++  GA
Sbjct: 452 KAVEEGGSSYAALQRLAREIRHGA 475


>gnl|CDD|179672 PRK03907, fliE, flagellar hook-basal body protein FliE; Reviewed.
          Length = 97

 Score = 26.4 bits (58), Expect = 1.9
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 46  DMAKGAIGDMEKAENVSLAALQGKTS-----MREAVDHIMQAERTLNLSIALRDKILSAV 100
            + K +I ++ K +  S  AL    +     + +A   I +AE ++ L + +R+K +SA 
Sbjct: 30  KLLKQSINELNKTQEQSEKALADIATGQVKDLHQAAIAIGKAETSMKLMLEVRNKAISAY 89

Query: 101 SEVSKMQI 108
            E+ + QI
Sbjct: 90  KEILRTQI 97


>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional.
          Length = 381

 Score = 25.8 bits (57), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 6/29 (20%)

Query: 82  AERTL--NLS----IALRDKILSAVSEVS 104
           AE TL  N+     IALR ++L  +S++S
Sbjct: 31  AEYTLRRNVEDLADIALRQRVLKDMSDLS 59


>gnl|CDD|178149 PLN02534, PLN02534, UDP-glycosyltransferase.
          Length = 491

 Score = 25.6 bits (56), Expect = 2.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 31  EEGGSSPISFSALLQDMAK 49
           E GGSS I+ S L+QD+ K
Sbjct: 468 ELGGSSHINLSILIQDVLK 486


>gnl|CDD|162757 TIGR02195, heptsyl_trn_II, lipopolysaccharide heptosyltransferase
           II.  This family consists of examples of ADP-heptose:LPS
           heptosyltransferase II, an enzyme of LPS inner core
           region biosynthesis. LPS, composed of lipid A, a core
           region, and O antigen, is found in the outer membrane of
           Gram-negative bacteria.
          Length = 334

 Score = 24.6 bits (54), Expect = 5.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 51  AIGDMEKAENVSLAALQGKTSMREAVDHI 79
           A  ++E      L  L G+TS+ EAVD I
Sbjct: 221 AGNEIEALLPGELRNLAGETSLDEAVDLI 249


>gnl|CDD|152390 pfam11955, PORR, Plant organelle RNA recognition domain.  This
          family, which was previously known as DUF860, has been
          shown to be a component of group II intron
          ribonucleoprotein particles in maize chloroplasts. The
          domain is required for the splicing of the introns with
          which it associates, and promotes splicing in the
          context of a heterodimer with the RNase III-domain
          protein RNC1. All of the members are predicted to
          localize to mitochondria or chloroplasts. It seems
          likely that most PORR proteins function in organellar
          RNA metabolism.
          Length = 333

 Score = 24.5 bits (54), Expect = 7.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 77 DHIMQAERTLNLSIALRDKILSA 99
          D  ++ E+ L L + L+D ILS 
Sbjct: 8  DKAVEREKRLRLVLKLKDLILSE 30


>gnl|CDD|129075 smart00842, FtsA, Cell division protein FtsA.  FtsA is essential
          for bacterial cell division, and co-localizes to the
          septal ring with FtsZ. It has been suggested that the
          interaction of FtsA-FtsZ has arisen through coevolution
          in different bacterial strains PUBMED:9352931.
          Length = 187

 Score = 24.0 bits (53), Expect = 8.8
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 13/44 (29%)

Query: 47 MAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQAERTLNLSI 90
          + KG I D+E A            ++REAV+   +AER   + I
Sbjct: 37 IRKGVIVDIEAAAR----------AIREAVE---EAERMAGVKI 67


>gnl|CDD|161764 TIGR00205, fliE, flagellar hook-basal body complex protein FliE.
           fliE is a component of the flagellar hook-basal body
           complex located possibly at (MS-ring)-rod junction.
          Length = 108

 Score = 23.7 bits (51), Expect = 9.7
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 3   IEQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVS 62
           I      N+   HT            S++       SFS LL++           ++ V+
Sbjct: 9   ISPFINLNTQNPHTAV-------NLFSSKSKAQDNDSFSDLLKNSITDLNKTQLASDKVT 61

Query: 63  LAALQGKTS--MREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQ 107
             A  G +S  + + +  + +A  ++++   +R+K + A  E+ +MQ
Sbjct: 62  EQAALGPSSVDLHDVMIAMQKASMSMSILKEVRNKAVKAYQEIMRMQ 108


>gnl|CDD|180730 PRK06851, PRK06851, hypothetical protein; Provisional.
          Length = 367

 Score = 23.8 bits (52), Expect = 9.9
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 28  NSNEEGGSSPISFSALLQDMAKGAI--GDMEK-AENVSLAALQGKTSMREAVDHIMQAER 84
           +S       P      + DM    I  G  EK AE +  A  + K  + EA   + +A+ 
Sbjct: 271 DSTAPHEYFPSREGDEIIDMYDELIDPGTDEKYAEEIKKAKERYKAKLNEATSFLAKAKA 330

Query: 85  TLN 87
             +
Sbjct: 331 LHD 333


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.313    0.125    0.322 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,592,489
Number of extensions: 85343
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 23
Length of query: 108
Length of database: 5,994,473
Length adjustment: 74
Effective length of query: 34
Effective length of database: 4,395,481
Effective search space: 149446354
Effective search space used: 149446354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.2 bits)