RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780379|ref|YP_003064792.1| flagellar hook-basal body
protein FliE [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>2v8t_A Manganese-containing pseudocatalase; manganese catalase,
          oxidoreductase; 0.98A {Thermus thermophilus} PDB:
          2v8u_A 2cwl_A (A:1-138)
          Length = 138

 Score = 26.4 bits (58), Expect = 1.3
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 1  MMIEQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDME 56
           +   + G    +    +  M Y   Q+ N  G  +   +  L+ ++A   +G +E
Sbjct: 25 AVQALLGGRFGEM----STLMNY-MYQSFNFRGKKALKPYYDLIANIATEELGHIE 75


>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron
           transport; HET: HEM CIT; 2.20A {Marinobacter
           hydrocarbonoclasticus} (A:79-102,A:180-326)
          Length = 171

 Score = 26.2 bits (57), Expect = 1.5
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 71  SMREAVDHIMQAERTLNLSIALRDKIL 97
           S+ EAV  +  A+    L+      I+
Sbjct: 112 SLEEAVAVMGTAQLGTELNNDEVKSIV 138


>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET:
           HEC; 2.70A {Rhodobacter capsulatus} (A:82-115,A:183-328)
          Length = 180

 Score = 26.1 bits (57), Expect = 1.8
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 71  SMREAVDHIMQAERTLNLSIALRDKILS 98
            +REAV  +  ++    L     D+I +
Sbjct: 122 DLREAVSVMANSQLGATLDDTQVDQITA 149


>3lov_A Protoporphyrinogen oxidase; structural genomics, joint
           center for structural genomics, JCSG, protein structure
           initiative, PSI-2; HET: FAD; 2.06A {Exiguobacterium
           sibiricum} (A:1-41,A:248-300,A:415-475)
          Length = 155

 Score = 24.5 bits (53), Expect = 5.0
 Identities = 3/35 (8%), Positives = 7/35 (20%)

Query: 51  AIGDMEKAENVSLAALQGKTSMREAVDHIMQAERT 85
             G       +       KT +          + +
Sbjct: 117 LAGLAYDGVGLPDCVASAKTXIESIELEQSHTDES 151


>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding,
          folate binding, amine oxidase, oxidoreductase; HET:
          FAD; 1.61A {Arthrobacter globiformis} (A:508-600)
          Length = 93

 Score = 23.6 bits (51), Expect = 8.8
 Identities = 4/27 (14%), Positives = 8/27 (29%)

Query: 42 ALLQDMAKGAIGDMEKAENVSLAALQG 68
          A  +  A+         + V +    G
Sbjct: 67 AYFERAARHQTQSGSATDWVQVRDTTG 93


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.313    0.125    0.322 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 665,698
Number of extensions: 23300
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 8
Length of query: 108
Length of database: 4,956,049
Length adjustment: 64
Effective length of query: 44
Effective length of database: 2,792,529
Effective search space: 122871276
Effective search space used: 122871276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.3 bits)