RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780379|ref|YP_003064792.1| flagellar hook-basal body
protein FliE [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase)
          {Thermus thermophilus [TaxId: 274]}
          Length = 299

 Score = 27.2 bits (60), Expect = 0.36
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 1  MMIEQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDME 56
           +   + G    +S      M Y   Q+ N  G  +   +  L+ ++A   +G +E
Sbjct: 25 AVQALLGGRFGEMS----TLMNY-MYQSFNFRGKKALKPYYDLIANIATEELGHIE 75


>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
           UGT71G1 {Medicago truncatula [TaxId: 3880]}
          Length = 461

 Score = 24.7 bits (52), Expect = 2.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 31  EEGGSSPISFSALLQDM 47
            +GGSS IS   L+ D+
Sbjct: 443 VDGGSSLISVGKLIDDI 459


>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
           {Medicago truncatula [TaxId: 3880]}
          Length = 473

 Score = 24.4 bits (51), Expect = 2.5
 Identities = 4/17 (23%), Positives = 11/17 (64%)

Query: 31  EEGGSSPISFSALLQDM 47
             GG S ++ + +++D+
Sbjct: 454 RPGGCSYMNLNKVIKDV 470


>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 97

 Score = 23.5 bits (51), Expect = 4.6
 Identities = 8/28 (28%), Positives = 11/28 (39%)

Query: 22 RYDFTQNSNEEGGSSPISFSALLQDMAK 49
          RY F Q ++  G         LL D  +
Sbjct: 7  RYLFKQVASSTGFCDQRRLGLLLHDSIQ 34


>d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain
          IV {Thermus thermophilus, EF-G-2 [TaxId: 274]}
          Length = 115

 Score = 22.7 bits (48), Expect = 9.1
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 10 NSFISHTDTIGMRYDFTQNSNEEGGSSPISF 40
             ++    +G +      S  E  SS ++F
Sbjct: 68 KGVLAGFPVMGFKAIVYNGSYHEVDSSDLAF 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.125    0.322 

Gapped
Lambda     K      H
   0.267   0.0383    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 329,024
Number of extensions: 11960
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 6
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.8 bits)