RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780379|ref|YP_003064792.1| flagellar hook-basal body protein FliE [Candidatus Liberibacter asiaticus str. psy62] (108 letters) >d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus thermophilus [TaxId: 274]} Length = 299 Score = 27.2 bits (60), Expect = 0.36 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 5/56 (8%) Query: 1 MMIEQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDME 56 + + G +S M Y Q+ N G + + L+ ++A +G +E Sbjct: 25 AVQALLGGRFGEMS----TLMNY-MYQSFNFRGKKALKPYYDLIANIATEELGHIE 75 >d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]} Length = 461 Score = 24.7 bits (52), Expect = 2.4 Identities = 8/17 (47%), Positives = 11/17 (64%) Query: 31 EEGGSSPISFSALLQDM 47 +GGSS IS L+ D+ Sbjct: 443 VDGGSSLISVGKLIDDI 459 >d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]} Length = 473 Score = 24.4 bits (51), Expect = 2.5 Identities = 4/17 (23%), Positives = 11/17 (64%) Query: 31 EEGGSSPISFSALLQDM 47 GG S ++ + +++D+ Sbjct: 454 RPGGCSYMNLNKVIKDV 470 >d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Score = 23.5 bits (51), Expect = 4.6 Identities = 8/28 (28%), Positives = 11/28 (39%) Query: 22 RYDFTQNSNEEGGSSPISFSALLQDMAK 49 RY F Q ++ G LL D + Sbjct: 7 RYLFKQVASSTGFCDQRRLGLLLHDSIQ 34 >d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 115 Score = 22.7 bits (48), Expect = 9.1 Identities = 6/31 (19%), Positives = 12/31 (38%) Query: 10 NSFISHTDTIGMRYDFTQNSNEEGGSSPISF 40 ++ +G + S E SS ++F Sbjct: 68 KGVLAGFPVMGFKAIVYNGSYHEVDSSDLAF 98 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.313 0.125 0.322 Gapped Lambda K H 0.267 0.0383 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 329,024 Number of extensions: 11960 Number of successful extensions: 26 Number of sequences better than 10.0: 1 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 6 Length of query: 108 Length of database: 2,407,596 Length adjustment: 68 Effective length of query: 40 Effective length of database: 1,473,956 Effective search space: 58958240 Effective search space used: 58958240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 47 (22.8 bits)