BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780379|ref|YP_003064792.1| flagellar hook-basal body
protein FliE [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780379|ref|YP_003064792.1| flagellar hook-basal body protein FliE [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 108

 Score =  219 bits (559), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MMIEQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAEN 60
           MMIEQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAEN
Sbjct: 1   MMIEQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAEN 60

Query: 61  VSLAALQGKTSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQI 108
           VSLAALQGKTSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQI
Sbjct: 61  VSLAALQGKTSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQI 108


>gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 469

 Score = 23.5 bits (49), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 70  TSMREAVDHIMQAERTLNLSIALRDKILS 98
           ++M E VD  ++AER L L   LR++ +S
Sbjct: 376 SNMLEQVDENVKAERLLCLQKKLREQQVS 404


>gi|255764487|ref|YP_003065115.2| heat shock protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 219

 Score = 21.6 bits (44), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 82  AERTLNLSIALRDKILSAVSEVSKMQ 107
            E +LN S   RDK L  ++E+  ++
Sbjct: 33  PEESLNQSEEFRDKYLRVIAEMENLR 58


>gi|254781008|ref|YP_003065421.1| hypothetical protein CLIBASIA_04550 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 99

 Score = 20.8 bits (42), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 9/12 (75%), Positives = 11/12 (91%)

Query: 95  KILSAVSEVSKM 106
           KIL A+SEVSK+
Sbjct: 87  KILRALSEVSKL 98


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.313    0.125    0.322 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,509
Number of Sequences: 1233
Number of extensions: 1846
Number of successful extensions: 8
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 108
length of database: 328,796
effective HSP length: 62
effective length of query: 46
effective length of database: 252,350
effective search space: 11608100
effective search space used: 11608100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 32 (16.9 bits)