HHsearch alignment for GI: 254780380 and conserved domain: COG1256

>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion].

Probab=98.61  E-value=8.9e-08  Score=59.59  Aligned_cols=61  Identities=33%  Similarity=0.436  Sum_probs=47.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH---HHC----CCCCCCEECCC
Q ss_conf             9047888852156899999998988875312555566754332011000123432---210----47542100026
Q gi|254780380|r    1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM---HGS----GGVRVKKIGVD   69 (134)
Q Consensus         1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~---~~~----~gv~~~~i~~~   69 (134)
T Consensus         1 ms-~~s~lnta~sgl~a~q~~l~vtg~NIsNant~g-------YsRQrv~~~~~~~~~~~~~~~G~Gv~V~sI~R~   68 (552)
T COG1256           1 MS-LFSLLNTALSGLNAAQAALDVTGHNISNANTPG-------YSRQRVIQTTNIPYLGGGLNVGTGVNVVSIQRL   68 (552)
T ss_pred             CC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-------CCEEEHHHHCCCCCCCCCCCCCCCEEEEEEEEH
T ss_conf             95-267799999999999999987561335689998-------630210432356643576666676488863116