HHsearch alignment for GI: 254780380 and conserved domain: PRK05681

>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed.
Probab=100.00  E-value=0  Score=283.74  Aligned_cols=132  Identities=49%  Similarity=0.757  Sum_probs=123.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-------HCCCCCCCEECCCCCCC
Q ss_conf             90478888521568999999989888753125555667543320110001234322-------10475421000265431
Q gi|254780380|r    1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH-------GSGGVRVKKIGVDQSTF   73 (134)
Q Consensus         1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~-------~~~gv~~~~i~~~~~~~   73 (134)
T Consensus         1 M~-~~~~~~ia~sgl~aq~~rl~~~a~NiAN~~tt~t~~-g~pYr~k~vvf~~~~~~~~~~~~~~~gV~v~~i~~d~~~~   78 (139)
T PRK05681          1 MS-LFSSFNIAGSGLSAQSQRLNVISSNIANADSTAGPD-GDPYRRKQVVFAAFGSAELDRGQGTGGVKVAKIVEDQSPF   78 (139)
T ss_pred             CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCH
T ss_conf             95-388899999999999999999998553267778999-9876431245530331000246787765887774389742


Q ss_pred             CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             0001432111250233330561099999999999999999999999999999999996469
Q gi|254780380|r   74 VEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD  134 (134)
Q Consensus        74 ~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r~  134 (134)
T Consensus        79 ~~~YdP~hP~AD~~GyV~~pNVd~~~Emvdm~~A~R~YeAN~~~~~~~k~m~~~~L~igk~  139 (139)
T PRK05681         79 KLVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQS  139 (139)
T ss_pred             HHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             2304789988886671542898889999999999999999999999999999999987439