HHsearch alignment for GI: 254780380 and conserved domain: PRK05681
>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed.
Probab=100.00 E-value=0 Score=283.74 Aligned_cols=132 Identities=49% Similarity=0.757 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-------HCCCCCCCEECCCCCCC
Q ss_conf 90478888521568999999989888753125555667543320110001234322-------10475421000265431
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH-------GSGGVRVKKIGVDQSTF 73 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~-------~~~gv~~~~i~~~~~~~ 73 (134)
T Consensus 1 M~-~~~~~~ia~sgl~aq~~rl~~~a~NiAN~~tt~t~~-g~pYr~k~vvf~~~~~~~~~~~~~~~gV~v~~i~~d~~~~ 78 (139)
T PRK05681 1 MS-LFSSFNIAGSGLSAQSQRLNVISSNIANADSTAGPD-GDPYRRKQVVFAAFGSAELDRGQGTGGVKVAKIVEDQSPF 78 (139)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCH
T ss_conf 95-388899999999999999999998553267778999-9876431245530331000246787765887774389742
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0001432111250233330561099999999999999999999999999999999996469
Q gi|254780380|r 74 VEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134 (134)
Q Consensus 74 ~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r~ 134 (134)
T Consensus 79 ~~~YdP~hP~AD~~GyV~~pNVd~~~Emvdm~~A~R~YeAN~~~~~~~k~m~~~~L~igk~ 139 (139)
T PRK05681 79 KLVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQS 139 (139)
T ss_pred HHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 2304789988886671542898889999999999999999999999999999999987439