HHsearch alignment for GI: 254780380 and conserved domain: PRK06004
>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed.
Probab=99.25 E-value=6.5e-11 Score=75.78 Aligned_cols=106 Identities=18% Similarity=0.328 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH---HHHHHHHHCC-----CCCCC-----EECCC--CCCCCCC
Q ss_conf 56899999998988875312555566754332011000---1234322104-----75421-----00026--5431000
Q gi|254780380|r 12 NSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTI---SFEEVMHGSG-----GVRVK-----KIGVD--QSTFVEE 76 (134)
Q Consensus 12 ~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v---~~~~~~~~~~-----gv~~~-----~i~~~--~~~~~~~ 76 (134)
T Consensus 3 ~~~m~~~~~Rq~via~NIANadTPg-------YkarDl~~~~F~~~l~~~~~~~~~~~~l~~T~~~Hi~~~~~~~~~~~~ 75 (126)
T PRK06004 3 RTRMQWHQERQKVLAENVANSDTPG-------FRPRDLVEPKFDATGQLAAGSPGGGLAMMRTSASHMAPPGGSPSFDAR 75 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf 8888799999999997244068999-------883236525199999998605788875344786432887788776540
Q ss_pred CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 14321112502333305610999999999999999999999999999999999
Q gi|254780380|r 77 FDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 77 y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
T Consensus 76 ~~~~~~~-~~d----GN~Vdle~Em~~~aen~~~Y~~~~~~~~~~~~~l~~AI 123 (126)
T PRK06004 76 RNAGFET-RPA----GNAVNLEDEMLKVSDNQMDYAAATSLYQKSLGLLKTAI 123 (126)
T ss_pred CCCCCCC-CCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1578633-899----98146999999999999999999999999999999997