HHsearch alignment for GI: 254780380 and conserved domain: PRK12624
>PRK12624 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=99.39 E-value=3.2e-12 Score=82.51 Aligned_cols=115 Identities=19% Similarity=0.341 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC---------C-----CEECC-
Q ss_conf 78888521568999999989888753125555667543320110001234322104754---------2-----10002-
Q gi|254780380|r 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVR---------V-----KKIGV- 68 (134)
Q Consensus 4 l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv~---------~-----~~i~~- 68 (134)
T Consensus 7 f~kT~~lL~kaLd~~~~Rq~vIa~NIAN~dTPg-------YK~~dv~Fe~~L~~al~~~~~~~~~~~~~~~t~~rHi~~~ 79 (143)
T PRK12624 7 FMKTQDLLERGMNNSIQKRKVISDNIANADVPH-------FKRSEVIFESMIKRAIESEKIEKEKEVPTQISDERHIQFF 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 026999999999999999999986011268999-------7632062999999998602223444566666872212567
Q ss_pred -----CCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----65431000143211125023333056109999999999999999999999999999999999
Q gi|254780380|r 69 -----DQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLD 130 (134)
Q Consensus 69 -----~~~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~ 130 (134)
T Consensus 80 ~~~~~~~~~~~~~~d~~t~~-r~DG----NnVDid~Em~~la~N~l~Y~al~~~l~~~~~~lr~vIk 141 (143)
T PRK12624 80 KPLDYREVQPKTNLDYLTTM-RADG----NNVDVEKEVVEASNSQMQYMLMIERLNQNYRLLKQVMR 141 (143)
T ss_pred CCCCCCCCCCEEEECCCCCC-CCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88873446742430467655-8998----72689999999999999999999999978999999973