HHsearch alignment for GI: 254780380 and conserved domain: PRK12625
>PRK12625 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=99.49 E-value=3.4e-13 Score=87.58 Aligned_cols=115 Identities=19% Similarity=0.294 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----CCCC-----EECC--CCC
Q ss_conf 4788885215689999999898887531255556675433201100012343221047----5421-----0002--654
Q gi|254780380|r 3 YLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG----VRVK-----KIGV--DQS 71 (134)
Q Consensus 3 ~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~g----v~~~-----~i~~--~~~ 71 (134)
T Consensus 4 ~fd~~~~~~~~aL~~~~~Rq~via~NIANadTPg-------YKa~dl~Fe~~L~~a~~~~~~~~l~~T~~~H~~~~~~~~ 76 (132)
T PRK12625 4 NFDKALGVHQYTLGIRAQRAEVISSNIANADTPH-------YKARDVDFSAAMQAARSQQQGLEMTGSDEKHFDLAALTG 76 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4888861789999999999999987143068999-------886538899999998754788866547745467767787
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3100014321112502333305610999999999999999999999999999999999
Q gi|254780380|r 72 TFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 72 ~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
T Consensus 77 ~~~~~~~~~~~~~-~D----GN~Vdid~Em~~~aeN~l~Y~a~~~~l~~k~~~l~~aI 129 (132)
T PRK12625 77 QHVKFRVPNQPDT-GD----GNTVDIQQEQSAFMQNALEYQMSLGFLDSKFSGMKKAL 129 (132)
T ss_pred CCCEEECCCCCCC-CC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6540235787747-89----98114799999999999999999999999999999987