HHsearch alignment for GI: 254780380 and conserved domain: PRK12627
>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=99.56 E-value=5.6e-14 Score=91.63 Aligned_cols=119 Identities=22% Similarity=0.245 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCC-----CCEECCC--CCC
Q ss_conf 9047888852156899999998988875312555566754332011000-1234322104754-----2100026--543
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTI-SFEEVMHGSGGVR-----VKKIGVD--QST 72 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v-~~~~~~~~~~gv~-----~~~i~~~--~~~ 72 (134)
T Consensus 2 ~~~-l~lf~l~~~~~~~la~Rq~ViA~NIANADTPg-------YkarDl~~F~~~l~~~~~~~~~~t~~~H~~~~~~~~~ 73 (128)
T PRK12627 2 FEK-LEIFRMASAMARHAGERQAVIAQNVANADTPG-------YRARDLADFAETYASMTAGGLRATRPGHLNGAAAGAA 73 (128)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 861-28999999999999999999997410379999-------8500004199999844122334477100156767778
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 10001432111250233330561099999999999999999999999999999999996469
Q gi|254780380|r 73 FVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134 (134)
Q Consensus 73 ~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r~ 134 (134)
T Consensus 74 ~~~~~~~~~~~~-~d----GN~V~le~Em~~~aen~~~Y~~~~~~~~~~~~~lrtAi--Gk~ 128 (128)
T PRK12627 74 DPVVTDAGGPAS-PN----GNSVSLEEEMLRSAEAKRQHDRALAIYKSSMSLLRTSL--GRS 128 (128)
T ss_pred CCCCCCCCCCCC-CC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCC
T ss_conf 764015899859-99----88355999999999999999999999999999999986--779