HHsearch alignment for GI: 254780380 and conserved domain: PRK12628
>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=100.00 E-value=0 Score=287.84 Aligned_cols=131 Identities=27% Similarity=0.432 Sum_probs=122.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH---------HCCCCCCCEECCCCC
Q ss_conf 90478888521568999999989888753125555667543320110001234322---------104754210002654
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH---------GSGGVRVKKIGVDQS 71 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~---------~~~gv~~~~i~~~~~ 71 (134)
T Consensus 1 M~-l~~~~~Ia~sgm~Aqr~Rl~viasNiANa~t~~~~~~-~~Y~~k~~vf~~~~~~~~~~~~~~~~~gV~v~~I~~~~~ 78 (140)
T PRK12628 1 MS-LNAIFDIAASAMTAETVRLTTSAGNMSNANVEAGSPD-EVYQAKYPVFKSVQENANQWMGEQIKAGVKLDGIYESDA 78 (140)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCEEECCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
T ss_conf 96-0778889999999999999999998863688888999-733531301344666554311555678748986663799
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 31000143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 72 TFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 72 ~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
T Consensus 79 ~~~~~YdP~hP~Ad~~GyV~~pnVn~~~EMvdm~~AsRsYEANv~v~~~aK~M~~~aL~IGk 140 (140)
T PRK12628 79 EPHRRYDPNSPIADKDGFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQLGE 140 (140)
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 82203699999988898673489888999999999999999999999999999999986179